RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11615
         (224 letters)



>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 28.5 bits (62), Expect = 0.70
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 149 EVCQLKQEIELLRNELQRAEGELED 173
           E+ QL+QE E L+N+++ A     D
Sbjct: 3   ELDQLRQEAEQLKNQIRDARKACAD 27


>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 387

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 13/83 (15%)

Query: 71  YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENA-------------AS 117
             +     + + ++  + E  +     L   Q  L+  R+E E A               
Sbjct: 288 EAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYG 347

Query: 118 EKIKLERRLQEHQALQGDASDLK 140
           E  KLE  ++        A  ++
Sbjct: 348 ELPKLEAEVEALSEKLRGARFVR 370


>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 77

 Score = 24.5 bits (53), Expect = 3.6
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 85  MKDMEGLQRAELDLANLQKELERARQEQ---ENAASEKIKLERRLQEHQALQGDASDLKS 141
           +KD E   + ++ +  L     +   ++   E A    I+ E +L  ++ L G   + K+
Sbjct: 8   LKDFEDWVKTQIQVNQLAMATSQEVAQEDGDERAKDAFIRYESKLDAYEFLLGKFDNYKN 67

Query: 142 SSAFSDL 148
             AF D+
Sbjct: 68  GKAFHDI 74


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 25.3 bits (54), Expect = 6.4
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 149 EVCQLKQEIELLRNELQRAEGELE 172
           EV +LK+ +   + +  R   + E
Sbjct: 334 EVARLKKLVSYWKEQAGRKGDDEE 357


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 781,538
Number of extensions: 34083
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 37
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)