BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11618
(1381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 162/639 (25%), Positives = 251/639 (39%), Gaps = 127/639 (19%)
Query: 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM---SSVLSL--S 214
G FD +IVG AG +A RL+E ++ VL++EAG P IP + SS + L S
Sbjct: 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNP--EDIPEITTPSSAMDLRNS 61
Query: 215 EFDHAY---LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLG 271
++D AY + + + N R GK LGGSS++ + G ++ + + G
Sbjct: 62 KYDWAYKTTMVRRDDYERIEKPNTR-----GKTLGGSSSLNYFTWVPGHKATFDQWEEFG 116
Query: 272 YNGWGYDETLKYFVKSEDYRS--VIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETS 328
W +D + Y KS Y +Y+ G G +P+ + E RE +
Sbjct: 117 GKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKA 176
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYG---LRFSAADAYLTPIAGKRTNLYVLKRS 385
+ +G P +++ D E+ G+T R + ++L + N+ ++
Sbjct: 177 WKSMGQPLIENIYD-------GEMDGLTHCCDTIYRGQRSGSFL--FVKNKPNITIVPEV 227
Query: 386 KVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
++IIN+ + GV V + G + A++EVIL+ G +LL+LSGIGP L
Sbjct: 228 HSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELS 287
Query: 445 EVKIPVKQDLR-VGEN----------LKLNAQF-TGPVMAFSAPLKRTVYSQEMVFKYLV 492
I D R VG+N L++ F V+ P + V S Y
Sbjct: 288 RHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSA-----YNK 342
Query: 493 NRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ 552
NR GP+ + L+ V P R+ + L+ +A++
Sbjct: 343 NRSGPVGS--------GLLELVGFP-----RIDKYLEKDAEY------------------ 371
Query: 553 EMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYD 612
R +N G D +P E+ + C A+
Sbjct: 372 ---------RKAKAANGGK-------DPFSPLGQPHFELDFV----------CMFGTAFQ 405
Query: 613 FNDEVQTAYVNLNKRTDMGVISMSLVNPKS-CGKVTLKSADPLAPPCIDTGILSEPEDLA 671
+ + K D + + LV P S G+VTL SADP P I+ + D+
Sbjct: 406 W-------HFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDII 458
Query: 672 TLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWR----STHSWTCYIRHLTTTTS 727
+ G + L L G +E S+YPW S + T
Sbjct: 459 AMREGIRFSYDL-------LFKGEGFKDLVE--SEYPWEMPLDSDKEMHRAVLDRCQTAF 509
Query: 728 NPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
+P GT + D VV P LKV GIK LRVAD SV+P
Sbjct: 510 HPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIP 547
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 159/338 (47%), Gaps = 34/338 (10%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRI--PGMSSVLSLSEFDHAYL 221
DI+IVG +AG +LA RLSE +VLLIEA G+ P I P L +D Y
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEA-GEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 222 AEP-SQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDE 279
E + AG AR G+ +GGSS + + Y RG D++ + G WG+DE
Sbjct: 78 TEAQAGTAGRAHHWAR-----GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 339
L F ED+ G LP+ L ++ + + R E A LG P +
Sbjct: 133 LLPVFQAIEDHPLGGDGIHG----KGGPLPIHLPADEVSPLARAFIEAGAS-LGLPRLEG 187
Query: 340 MNDRYVDVGFAELPGMT------RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 393
N E+ G+T R G R +AADA+LT R NL +L S+V ++ +
Sbjct: 188 HNS-------GEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE 240
Query: 394 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
V + +E V +G + V A+ +++L AGA+ + LL+ SGIGP LD + D
Sbjct: 241 GNQVRS-LEVVGRQG-SAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLID 297
Query: 454 L-RVGENLKLNAQFTGPVMAFSAPL--KRTVYSQEMVF 488
+ +G NL+ + G + A P+ R +S+ M +
Sbjct: 298 MPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAY 335
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN 767
+I T +P GT MG DP+AVV +L++K + L V D S++PN
Sbjct: 452 FIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPN 499
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 26/317 (8%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMS-SVLSLSEFDHA 219
FD ++VGA AG V+A RL+E + VL++EAG + + + P ++ ++ S FD
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 278
Y + A G I G+ LGGSS+V ++ RG++ D++ +A + G GW +D
Sbjct: 63 Y----TTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118
Query: 279 ETLKYFVKSE------DYRSVIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQ 330
++ K+E D + AVHGT G + + L F ++ + + ++
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSE 178
Query: 331 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 390
E + DM + +G + G R S++ AYL P A R NL VL ++VTK+
Sbjct: 179 EFFF--NPDMGTGH-PLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKL 234
Query: 391 I----INDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 445
+ N VEY +G T V A KEV+L+AG++ LL LSGIG + L
Sbjct: 235 VNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSS 294
Query: 446 VKI-PVKQDLRVGENLK 461
V I + + VG NL
Sbjct: 295 VGIDTIVNNPSVGRNLS 311
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 627 RTDMGV---ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRL 683
R D G ++ +L++P + G + L +++P P I+ LS D+ T+I+ R
Sbjct: 403 RPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRF 462
Query: 684 EQTEA-----IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNA 738
+A IR L +A + YIR T +PVGT M
Sbjct: 463 LSGQAWADFVIRPFDPRLRDPTDDAAIE----------SYIRDNANTIFHPVGTASMSPR 512
Query: 739 DDPNAVVTPDLKVKGIKGLRVADISVLPNA 768
VV PDLKVKG+ GLR+ D S+LP A
Sbjct: 513 GASWGVVDPDLKVKGVDGLRIVDGSILPFA 542
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 36/346 (10%)
Query: 136 LEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
L ++ ++ S++ P +G +D II G G +A +L+E +KVL+IE G
Sbjct: 2 LPAQQIDVQSSLLSDPSKV----AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG 57
Query: 196 ----GDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAV 251
D I P + + D YL P + N I AGKGLGGS+ +
Sbjct: 58 FYESNDGAIIED-PNAYGQIFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLI 110
Query: 252 QNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKA-------VHG 303
+ R +++ K+ G GW +D +Y K+E R+ + A HG
Sbjct: 111 NGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHG 170
Query: 304 TQGYLPVGLFKNKE--NNIIREIFETSAQELGYPCPKDM---NDRYVDVGFAELPGMTRY 358
T G + G N + + I++ + T LG P +D + R V + + +
Sbjct: 171 TNGTVQSGARDNGQPWSPIMKALMNT-VSALGVPVQQDFLCGHPRGVSM---IMNNLDEN 226
Query: 359 GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTA 415
+R AA A+L P +R+NL +L V KV+ A GV + +K V A
Sbjct: 227 QVRVDAARAWLLPNY-QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFA 285
Query: 416 NKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLK 461
EV+L AG+ + +L SGIG K+ LD+ + DL VG N++
Sbjct: 286 KHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQ 331
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 145/326 (44%), Gaps = 29/326 (8%)
Query: 155 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG----DTPIHSRIPGMSSV 210
P SG D II G G A RL+E ++ VL+IE+G PI + +
Sbjct: 12 PKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDI 71
Query: 211 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 270
S DHAY + L N I +G GLGGS+ V + R +++ +
Sbjct: 72 FG-SSVDHAY-----ETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETV 125
Query: 271 -GYNGWGYDETLKYFVKSEDYRSVIYNE-------SKAVHGTQGYLPVGLFKNKEN-NII 321
G GW +D Y +++E R+ + + + HG G + G ++ + I
Sbjct: 126 FGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPI 185
Query: 322 REIFETSAQELGYPCPKDMN--DRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTN 378
+ ++ ++ G P KD D + G + P + +R AA +L P +R N
Sbjct: 186 VKALMSAVEDRGVPTKKDFGCGDPH---GVSMFPNTLHEDQVRSDAAREWLLPNY-QRPN 241
Query: 379 LYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 435
L VL V KV+++ A GVE+ KG T V A EV+L AG+ + +L S
Sbjct: 242 LQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYS 301
Query: 436 GIGPKAHLDEVKIPVKQDLRVGENLK 461
GIG K+ L+ + I DL VG NL+
Sbjct: 302 GIGMKSILEPLGIDTVVDLPVGLNLQ 327
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 144/312 (46%), Gaps = 30/312 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 214
FD I+VG +AG +A RLSE ++ V L+EAG D G+ VL L S
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 215 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 273
+D Y EP + +R+AR K+ +GG S+ + + D + + AK G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
GW + + + E HG G PV L + + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 334 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 391
P K N V A + R G R S++ +Y+ PI ++ N +L + +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 392 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
+ TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 451 KQDL-RVGENLK 461
D VGE+L+
Sbjct: 297 LVDSPGVGEHLQ 308
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIR 690
++ ++ + +S G V L+S D P +D ++PE D+ ++ G + A+
Sbjct: 375 LTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMA 434
Query: 691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 750
G +S +EA ++ YIR T +PVGTV MG +D + + P+L+
Sbjct: 435 EWTGRELSPGVEA------QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELR 488
Query: 751 VKGIKGLRVADISVLPNAI 769
VKG+ GLRVAD SV+P +
Sbjct: 489 VKGVTGLRVADASVMPEHV 507
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 144/312 (46%), Gaps = 30/312 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 214
FD I+VG +AG +A RLSE ++ V L+EAG D G+ VL L S
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 215 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 273
+D Y EP + +R+AR K+ +GG S+ + + D + + AK G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
GW + + + E HG G PV L + + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 334 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 391
P K N V A + R G R S++ +Y+ PI ++ N +L + +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 392 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
+ TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 451 KQDL-RVGENLK 461
D VGE+L+
Sbjct: 297 LVDSPGVGEHLQ 308
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIR 690
++ ++ + +S G V L+S D P +D ++PE D+ ++ G + A+
Sbjct: 375 LTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMA 434
Query: 691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 750
G +S +EA ++ YIR T +PVGTV MG +D + + P+L+
Sbjct: 435 EWTGRELSPGVEA------QTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELR 488
Query: 751 VKGIKGLRVADISVLPNAI 769
VKG+ GLRVAD SV+P +
Sbjct: 489 VKGVTGLRVADASVMPEHV 507
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 30/312 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 214
FD I+VG +AG +A RLSE ++ V L+EAG D G+ VL L S
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 215 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 273
+D Y EP + +R+AR K+ +GG S+ + D + + AK G
Sbjct: 68 GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGAT 122
Query: 274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
GW + + + E HG G PV L + + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 334 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 391
P K N V A + R G R S++ +Y+ PI ++ N +L + +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 392 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
+ TGV+ V+S G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 451 KQDL-RVGENLK 461
D VGE+L+
Sbjct: 297 LVDSPGVGEHLQ 308
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIR 690
++ ++ + +S G V L+S D P +D ++PE D+ ++ G + A+
Sbjct: 375 LTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMA 434
Query: 691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 750
G +S +EA ++ YIR T +PVGTV MG +D + + P+L+
Sbjct: 435 EWTGRELSPGVEA------QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELR 488
Query: 751 VKGIKGLRVADISVLPNAI 769
VKG+ GLRVAD SV+P +
Sbjct: 489 VKGVTGLRVADASVMPEHV 507
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 125/306 (40%), Gaps = 64/306 (20%)
Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAY 220
+D +IVG +GC LA LSE KVL++E G T + + V +L + D
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGK 83
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD-- 278
+ G+ N R G+ LGG+S + +Y R + Y + G + W D
Sbjct: 84 TPVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLV 134
Query: 279 --------ETLKYFVKSEDYRSVIYNE--SKAVHGTQGYLPVGLFKNKENNIIREIFETS 328
+T+ Y S+ ++SV VH G+ L + I F+
Sbjct: 135 NQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGF---SLDHEEGTRITGSTFDNK 191
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 388
TR+ AAD L G NL V + V
Sbjct: 192 G--------------------------TRH-----AADELLN--KGNSNNLRVGVHASVE 218
Query: 389 KVIINDQN--VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
K+I ++ ATGV Y +S G V + EVI++AG I QLLLLSG+GP+++L
Sbjct: 219 KIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLS 278
Query: 445 EVKIPV 450
+ IPV
Sbjct: 279 SLNIPV 284
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 125/306 (40%), Gaps = 64/306 (20%)
Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAY 220
+D +IVG +GC LA LSE KVL++E G T + + V +L + D
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGK 83
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD-- 278
+ G+ N R G+ LGG+S + +Y R + Y + G + W D
Sbjct: 84 TPVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLV 134
Query: 279 --------ETLKYFVKSEDYRSVIYNE--SKAVHGTQGYLPVGLFKNKENNIIREIFETS 328
+T+ Y S+ ++SV VH G+ L + I F+
Sbjct: 135 NQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGF---SLDHEEGTRITGSTFDNK 191
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 388
TR+ AAD L G NL V + V
Sbjct: 192 G--------------------------TRH-----AADELLN--KGNSNNLRVGVHASVE 218
Query: 389 KVIINDQN--VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
K+I ++ ATGV Y +S G V + EVI++AG I QLLLLSG+GP+++L
Sbjct: 219 KIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLS 278
Query: 445 EVKIPV 450
+ IPV
Sbjct: 279 SLNIPV 284
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 126/298 (42%), Gaps = 47/298 (15%)
Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAY 220
+D +IVG +GC LA LSE KVL++E G T + + + +L + D
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQ 83
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
+G G+ + R G+ LGG+S + +Y R + + F+ G W D
Sbjct: 84 TPVERFVSGDGIDDVR-----GRVLGGTSMINAGVYARANT---KIFSASGIE-WDMDLV 134
Query: 281 LKYFVKSEDYRSVIYNESKAVHGT---QGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ + ED +++Y K + +L G+ + G+
Sbjct: 135 NQTYDWVED--TIVYKPDKQAWQSLTKTAFLEAGVLPDN----------------GFSLD 176
Query: 338 KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN- 396
+ R F TR+ A+D L G NL V + V K+I + +
Sbjct: 177 HEAGTRLTGSTFDN--NGTRH-----ASDELLN--KGDPNNLRVAVHASVEKIIFSSNSS 227
Query: 397 --VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
A GV Y +S G V EVI++AG I + QLLLLSG+GP+++L + IPV
Sbjct: 228 GVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPV 285
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 45/302 (14%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSEFDHA 219
+D IIVGA G + A+RLSE KVLL+E GG + + + ++ L++FD
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-- 59
Query: 220 YLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 272
P F L + I + AG +GG ++V LY D+ + +G+
Sbjct: 60 ---IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 114
Query: 273 NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 328
+ W Y L + S D+ S Q YL + N++ ++ +
Sbjct: 115 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 157
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 388
Q D N Y D F G R YL A R N V+
Sbjct: 158 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 215
Query: 389 KVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 445
V+ N + GV+ + + VT VIL+AGA +++L SGIGP +
Sbjct: 216 NVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 274
Query: 446 VK 447
V+
Sbjct: 275 VQ 276
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 120/306 (39%), Gaps = 45/306 (14%)
Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSE 215
S +D IIVGA G + A+RLSE KVLL+E GG + + + ++ L++
Sbjct: 4 SATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62
Query: 216 FDHAYLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK 269
FD P F L + I + AG +GG ++V LY D+ +
Sbjct: 63 FD-----IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SS 115
Query: 270 LGY-NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREI 324
+G+ + W Y L + S D+ S Q YL + N++ ++
Sbjct: 116 VGWPSSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQL 160
Query: 325 FETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR 384
+ Q D N Y D F G R YL A R N
Sbjct: 161 LK--GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTN 216
Query: 385 SKVTKVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 441
V+ V+ N + GV+ + + VT VIL+AGA +++L SGIGP
Sbjct: 217 VMVSNVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTD 275
Query: 442 HLDEVK 447
+ V+
Sbjct: 276 MIQTVQ 281
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 193
FD +IVGA AG VLA RL+ S +VL+++
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS-SGQRVLIVD 59
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLSLSEFDHAY 220
+++VGA +G A L V V+L EAG G S +PG+S+ + E+ A
Sbjct: 394 VLVVGAGPSGLEAARALG-VRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAV 452
Query: 221 LAE 223
LAE
Sbjct: 453 LAE 455
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 54 DQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKD- 112
DQ+ FS++ N++ K PD WP+ +++KF P++ Y + V+P D
Sbjct: 133 DQVAFSFI-------LDNIVTQKMMAVPDSWPFHHPVNKKFVPDY-YKVI----VNPMDL 180
Query: 113 RVIYYNVLKTKYEKCPDF 130
I N+ K KY+ F
Sbjct: 181 ETIRKNISKHKYQSRESF 198
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 54 DQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKD- 112
DQ+ FS++ N++ K PD WP+ +++KF P++ Y + V+P D
Sbjct: 166 DQVAFSFI-------LDNIVTQKMMAVPDSWPFHHPVNKKFVPDY-YKVI----VNPMDL 213
Query: 113 RVIYYNVLKTKYEKCPDF 130
I N+ K KY+ F
Sbjct: 214 ETIRKNISKHKYQSRESF 231
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 54 DQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKD- 112
DQ+ FS++ N++ K PD WP+ +++KF P++ Y + V+P D
Sbjct: 145 DQVAFSFI-------LDNIVTQKMMAVPDSWPFHHPVNKKFVPDY-YKVI----VNPMDL 192
Query: 113 RVIYYNVLKTKYEKCPDF 130
I N+ K KY+ F
Sbjct: 193 ETIRKNISKHKYQSRESF 210
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 54 DQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKD- 112
DQ+ FS++ N++ K PD WP+ +++KF P++ Y + V+P D
Sbjct: 26 DQVAFSFILD-------NIVTQKMMAVPDSWPFHHPVNKKFVPDY-YKVI----VNPMDL 73
Query: 113 RVIYYNVLKTKYEKCPDF 130
I N+ K KY+ F
Sbjct: 74 ETIRKNISKHKYQSRESF 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,284,692
Number of Sequences: 62578
Number of extensions: 1064323
Number of successful extensions: 2875
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2824
Number of HSP's gapped (non-prelim): 46
length of query: 1381
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1270
effective length of database: 8,027,179
effective search space: 10194517330
effective search space used: 10194517330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)