BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11618
(1381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 173/305 (56%), Gaps = 18/305 (5%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
+D I++G +AG V+A+RLSEV KVLLIEAGGD P+ ++IP M S+ D+ Y
Sbjct: 65 YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124
Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
EP + A L R GK LGG+S + ++Y RG DY+++A G GW Y + L
Sbjct: 125 EPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLP 184
Query: 283 YFVKSED--YRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 340
+F KSED + E H G LPVG F N + + +E+G+ +D+
Sbjct: 185 FFKKSEDNLELDAVGTE---YHAKGGLLPVGKF--PYNPPLSYALLKAGEEMGFSV-QDL 238
Query: 341 NDRYVDVGF--AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN--DQN 396
N + GF A++ R G+R+S+A A+L P A R NL++L + VTKV+I+ +N
Sbjct: 239 NGQNS-TGFMIAQM--TARNGIRYSSARAFLRP-ARMRNNLHILLNTTVTKVLIHPGTKN 294
Query: 397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PVKQDLR 455
V GVE + G ++ KEVI++ GA+ + Q+LLLSG+GPK L +V + PV
Sbjct: 295 V-VGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPG 353
Query: 456 VGENL 460
VG+NL
Sbjct: 354 VGKNL 358
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
+++NPKS G +TL+SADPL PP I L++ D+ TL+ G + RL QT ++ G
Sbjct: 452 AVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMR 511
Query: 696 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 755
L ++ C + + S W C +R T ++ G+ MG + DP AVV +L+V G++
Sbjct: 512 LDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVR 571
Query: 756 GLRVADISVLPNAIITQSDAISFLLLFLFLLLL 788
GLRV D S++P + A + ++ LL
Sbjct: 572 GLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLL 604
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 171/303 (56%), Gaps = 14/303 (4%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
+D I++G +AG V+A+RLSEV KVLLIEAGGD P+ ++IP M S+ D+ Y
Sbjct: 65 YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124
Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
EP A L R GK LGG+S + ++Y RG DY+++A G GW Y++ L
Sbjct: 125 EPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLP 184
Query: 283 YFVKSEDYRSVIYNE-SKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
+F KSED ++ +E H G LPVG F N + + +ELG+ D+N
Sbjct: 185 FFKKSED--NLDLDEVGTEYHAKGGLLPVGKF--PYNPPLSYAILKAGEELGFSV-HDLN 239
Query: 342 DRYVDVGF--AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
+ GF A++ R G+R+S+A A+L P A R NL++L + TK++I+
Sbjct: 240 GQNS-TGFMIAQM--TARNGIRYSSARAFLRP-ARMRNNLHILLNTTATKILIHPHTKNV 295
Query: 400 -GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVG 457
GVE + G T ++ KEV+L+AGA+ + +LLLSG+GPK L +V + +L VG
Sbjct: 296 LGVEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVG 355
Query: 458 ENL 460
+NL
Sbjct: 356 KNL 358
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
+++NP+S G + L+SADPL PP I L+ +D+ TL+ G ++ RL QT ++ G
Sbjct: 452 AVLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMR 511
Query: 696 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 755
L ++ C + + S W C +R T ++ G+ MG + DP AVV +L+V GI+
Sbjct: 512 LDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIR 571
Query: 756 GLRVADISVLPNAIITQSDAISFLLLFLFLLLL 788
GLRV D S++P + A + ++ LL
Sbjct: 572 GLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLL 604
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 169/306 (55%), Gaps = 26/306 (8%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DT-P-IHSRIPGMSSVLSLSEFDHA 219
FD I+VG +AGCVLA RLSE S++V LIEAG DT P IH + ++ H
Sbjct: 5 FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPV----GFAKMTTGPHT 60
Query: 220 Y--LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 277
+ L EP + A N +I G+ LGG S++ ++ RG D++ +A G +GW +
Sbjct: 61 WDLLTEPQKHA----NNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSF 116
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ KYF++SE + ++ S HGT G P+G+ E N F S QE+G P
Sbjct: 117 RDVQKYFIRSEG--NAVF--SGTWHGTNG--PLGVSNLAEPNPTSRAFVQSCQEMGLPYN 170
Query: 338 KDMNDRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D N + A + MT R R S A YL P G R NL V+ R+ V K++ N
Sbjct: 171 PDFNGASQE--GAGIYQMTIRNNRRCSTAVGYLRPALG-RKNLTVVTRALVLKIVFNGTR 227
Query: 397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-R 455
ATGV+Y+ + G A++E+++TAGAI +L++LSG+GP AHL E IPV QDL
Sbjct: 228 -ATGVQYI-ANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPG 285
Query: 456 VGENLK 461
VGENL+
Sbjct: 286 VGENLQ 291
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 24/149 (16%)
Query: 640 PKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL 699
PKS G V L+SADP P +D L +P DL T E +RL+
Sbjct: 387 PKSRGTVRLRSADPRVNPMVDPNFLGDPADLET------------SAEGVRLSYEMFSQP 434
Query: 700 NLE-----AC---SQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV 751
+LE C + P + + Y R T+ +P T MG D +VV P LKV
Sbjct: 435 SLEKHIRKTCFFSGKQP--TMQMYRDYAREHGRTSYHPTCTCKMGRDD--MSVVDPRLKV 490
Query: 752 KGIKGLRVADISVLPNAIITQSDAISFLL 780
G++G+R+ D SV+P+ + + ++A + ++
Sbjct: 491 HGLEGIRICDSSVMPSLLGSNTNAATIMI 519
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 170/309 (55%), Gaps = 29/309 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSEFDHA 219
+D IIVGA +AGCVLA+RLS +LL+EAGG D I ++P + LS ++ +A
Sbjct: 5 YDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMP---TALSYPMNSEKYA 61
Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 279
+ E AGL R+ + G+ LGGSS++ ++Y RG + DY+ + + G GW Y E
Sbjct: 62 WQFETQPEAGLDSRS--LHCPRGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQE 119
Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQ----GYLPVGLFKNK--ENNIIREIFETSAQELG 333
L YF ++E + +HG G PVG E N + + F + Q+ G
Sbjct: 120 CLPYFRRAESW----------IHGEDTYRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAG 169
Query: 334 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 393
YP D N Y GF + G+R S ++AYL A KR+NL V K KV+I
Sbjct: 170 YPKTDDYNG-YQQEGFGPMHMTVDKGIRASTSNAYLR-RAMKRSNLTVRKGVVTRKVLIK 227
Query: 394 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
++ A GVE + G+ V AN EV+L+AG++ + QLL LSGIGPKA L++ I VK D
Sbjct: 228 NKQ-AIGVE-IEVGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHD 285
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 286 LPGVGENLQ 294
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 26/137 (18%)
Query: 640 PKSCGKVTLKSADPLAPPCIDTGILS---EPEDLATLIRGTDYITR-------LEQTEAI 689
P+S G++ + SADP P I+ +S + +D IR +TR ++
Sbjct: 388 PQSRGRIWITSADPHQKPNIEFNYISTEQDKQDWRDCIR----LTREILAQPAMDDYRGE 443
Query: 690 RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDL 749
+ G ++ S + ++R + +P T MG+ +DP V+ D
Sbjct: 444 EIQPGADIT------------SDEAMDAWVRQNVESAYHPSCTCKMGSDNDPMTVLNKDC 491
Query: 750 KVKGIKGLRVADISVLP 766
+V+GI LRV D SV P
Sbjct: 492 QVRGIDSLRVIDSSVFP 508
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 167/310 (53%), Gaps = 25/310 (8%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
FD II+GA +AG VLA RL+E + + VLL+EAGG +++P + L ++
Sbjct: 6 FDYIIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AYL EP + N R++ GKGLGGSS + + Y RG + D E ++KL G W Y
Sbjct: 66 AYLTEPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEGWSKLKGLENWTY 121
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNII--REIFETSAQELGYP 335
+ L Y+ K+E R + N+ HG PV + K+NN + + E Q GYP
Sbjct: 122 ADCLPYYKKAE-TRDIGGNDYHGDHG-----PVSVATPKDNNNVLFHAMVEAGVQ-AGYP 174
Query: 336 CPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 394
D+N Y GF + +T+ G R S A YL +A +R NL ++ + K++ N
Sbjct: 175 RTDDLNG-YQQEGFGPMDRTVTKNGRRSSTARGYLD-MAKERPNLTIITHAMTNKILFNG 232
Query: 395 QNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 452
+ A GVEY+ K + +V ANKEV+L AGAIA+ Q+L SG+G L + I V
Sbjct: 233 KQ-AIGVEYIQGADKRDLKKVMANKEVLLCAGAIASPQILQRSGVGESTFLKSMDIDVVH 291
Query: 453 DL-RVGENLK 461
DL VGENL+
Sbjct: 292 DLPGVGENLQ 301
Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
++R+ T +P + MG +D AVV +V G++GLRV D S++P
Sbjct: 467 FVRNHAETAYHPSCSCKMG--EDDMAVVDHQGRVHGLQGLRVVDASIMP 513
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 168/307 (54%), Gaps = 22/307 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
+D II+GA +AG VLA RL+E ++VLL+EAGG +++P + L ++
Sbjct: 7 YDYIIIGAGSAGNVLATRLTEDPDVQVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 66
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
A+ +P + + N R++ GKGLGGSS + + Y RG + DY+N+AK+ G W Y
Sbjct: 67 AFETDPEPY----MNNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNY 122
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE-NNIIREIFETSAQELGYPC 336
+ L YF ++E R + N+ HG G PV + KE NN + F + E GYP
Sbjct: 123 LQCLPYFKRAE-TRDIGPND---YHGGDG--PVSVATPKEGNNELYGAFIRAGIEAGYPA 176
Query: 337 PKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 395
+D+N Y GF + T G R S A YL IA +R NL ++ T VI +
Sbjct: 177 TEDVNG-YQQEGFGPMDRTTTPNGRRASTARGYLD-IAKQRPNL-TIETHATTDVIEFEG 233
Query: 396 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y KG+ RV A +EV+L AGAIA+ Q+L SG+G HL+E IPV +L
Sbjct: 234 KRAVGVSY-ERKGQAQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHELP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
++R T +P G+ MG+ADD AVV +V G++GLRV D S++P
Sbjct: 465 FVRQHAETAYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMP 513
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 167/307 (54%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD IIVGA +AG LA RL+E +S+ VLL+EAGG +++P + L ++
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDASVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P F + R++ GKGLGGSS + + Y RG + D++ +A+L G W Y
Sbjct: 65 AYETDPEPF----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG +G + V K N + + E Q GYP
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGEGPVSVATPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
+D+N Y GF + +T+ G R S A YL A KR NL ++ + +V+ D
Sbjct: 176 EDLNG-YQQEGFGPMDRSVTKKGRRSSTARGYLD-QAKKRPNLTIVTHALSDRVLF-DGK 232
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y V E V A KEVI+++GAIA+ QLL SG+GP+A L+ + IPV DL
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
+IR T +P + MG D AVV + +V G++GLRV D S++P
Sbjct: 465 FIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMQGLRVVDASIMP 511
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 165/307 (53%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD IIVGA +AG LA RL+E + + VLL+EAGG +++P + L ++
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + + R++ GKGLGGSS + + Y RG + D++ +A+L G W Y
Sbjct: 65 AYETDPEPY----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG G + V K N + + E Q GYP
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGDGPVSVATPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
+D+N Y GF + +T+ G R S A YL A KR NL ++ + +V+ D
Sbjct: 176 EDLNG-YQQEGFGPMDRSVTKNGRRSSTARGYLD-QAKKRPNLTIVTHALTDRVLF-DGK 232
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y V E V A KEVI+++GAIA+ QLL SG+GP+A L+ + IPV DL
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
+IR T +P + MG D AVV + +V G+KGLRV D S++P
Sbjct: 465 FIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMKGLRVVDASIMP 511
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 17/303 (5%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 221
+D IIVGA +AGCVLA+RLSE +VLL+EAGG D I ++P + LS Y
Sbjct: 5 YDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMP---TALSYPMNTEKYA 61
Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
+ A G+ ++ GK LGGSS++ ++Y RG + D++ + G GW Y L
Sbjct: 62 WQFETVAEEGLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACL 121
Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN--NIIREIFETSAQELGYPCPKD 339
YF K+E + +E + G PVG + N + + F + ++ GYP +D
Sbjct: 122 PYFRKAETWTGGA-DEYRG-----GSGPVGTCNGNDMKLNPLYQAFIEAGKDAGYPETQD 175
Query: 340 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
N Y GF + G+R S ++AYL+ A KR+N ++K ++++ + A
Sbjct: 176 YNG-YQQEGFGPMHMTVDKGVRASTSNAYLS-RAKKRSNFTLMKGVTAHRILLEGKK-AV 232
Query: 400 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGE 458
G+E+ S GE + ANKEV+ +AG+I + QLL LSGIGPK LD+ I VK L VG+
Sbjct: 233 GIEFEQS-GEIKQCFANKEVVSSAGSIGSVQLLQLSGIGPKTVLDKAGIEVKHTLEGVGK 291
Query: 459 NLK 461
NL+
Sbjct: 292 NLQ 294
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
+++ + +P + MG+ DDP AV+ +V+GI+GLRV D S+ P
Sbjct: 460 WVKQNVESAYHPSCSCKMGSNDDPMAVLNEACQVRGIEGLRVVDSSIFP 508
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 165/307 (53%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD IIVGA +AG LA RL+E + + VLL+EAGG +++P + L ++
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + R++ GKGLGGSS + + Y RG + D++ +A+L G W Y
Sbjct: 65 AYETDPEPH----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQDWTY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG +G + V K N + + E Q GYP
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGEGPVSVATPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
+D+N Y GF + +T+ G R S A YL A KR NL ++ + +V+ D
Sbjct: 176 EDLNG-YQQEGFGPMDRSVTKNGRRSSTARGYLD-QAKKRPNLTIVTHALSDRVLF-DGK 232
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y V E V A KEVI+++GAIA+ QLL SG+GP+A L+ + IPV DL
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
+IR T +P + MG D AVV + +V G+KGLRV D S++P
Sbjct: 465 FIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMKGLRVVDASIMP 511
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 166/307 (54%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD IIVGA +AG LA RL+E + + VLL+EAGG +++P + L ++
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + + R++ GKGLGGSS + + Y RG + D++ +A+L G W Y
Sbjct: 65 AYETDPEPY----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG +G + V K N + + E Q GYP
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGEGPVSVTTPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
+D+N Y GF + +T+ G R S A YL A KR NL ++ + +V+ D
Sbjct: 176 EDLNG-YQQEGFGPMDRTVTKNGRRSSTARGYLD-QAKKRPNLTIVTHALTDRVLF-DGK 232
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y V E V A KEVI+++GAIA+ QLL SG+GP+A L+ + IPV DL
Sbjct: 233 RAIGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
+IR T +P + MG D AVV + +V G+KGLRV D S++P
Sbjct: 465 FIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMKGLRVVDASIMP 511
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 163/307 (53%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
+D IIVGA +AG LA RL+E + VLL+EAGG +++P + L ++
Sbjct: 5 YDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + R++ GKGLGGSS + + Y RG + DY+ +AKL G W Y
Sbjct: 65 AYETDPEPH----MNGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWTY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG +G + V K N + + E Q GYP
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGEGPVSVTTPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
+D+N Y GF + +T G R S A YL A KR+ L ++ + K++ +
Sbjct: 176 EDLNG-YQQEGFGPMDRTVTPKGRRASTARGYLD-TAKKRSTLTIVTHALTDKILFEGKR 233
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y S E V A KEVI+++GAIA+ QLL SG+GP+A L+ + IPV DL
Sbjct: 234 -AVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 34.7 bits (78), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G+V LKS DP P I ++ +D G + Q A+ G
Sbjct: 390 SMRSP-SRGRVQLKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGR 448
Query: 696 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 755
+S +E ++ ++R T +P + MG D AVV +V G++
Sbjct: 449 EISPGIEV------QTDEQLDKFVREHAETAFHPSCSCKMGTDD--MAVVDGQGRVHGMQ 500
Query: 756 GLRVADISVLPNAIIT 771
GLRV D S++P IIT
Sbjct: 501 GLRVVDASIMP--IIT 514
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 162/306 (52%), Gaps = 20/306 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
FD II+GA +AG VLA RL+E S + VLL+EAGG +++P + L ++
Sbjct: 7 FDYIIIGAGSAGNVLATRLTEDSDVSVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 66
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
A+ +P + N R++ GKGLGGSS + + Y RG + DY+++AK G W Y
Sbjct: 67 AFETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDHWAKQPGLEEWDY 122
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
L YF KSE R + N+ HG G + V K N + R E Q GYP
Sbjct: 123 LSCLPYFKKSE-TRDIGPND---YHGGDGPVSVTTPKAGNNPLYRTFIEAGKQ-AGYPET 177
Query: 338 KDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
+D+N Y GF + +T G R S A YL A +R+NL + R+ VT VI +
Sbjct: 178 EDVNG-YQQEGFGPMDRFVTPKGRRASTARGYLD-TAKQRSNLTIETRA-VTDVIEFEGK 234
Query: 397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-R 455
A GV Y KG+ + A +EV+L GAIA+ Q+L SG+G L E+ IPV +L
Sbjct: 235 RAVGVRY-EQKGQPKQARARREVLLCGGAIASPQILQRSGVGNPEWLKELGIPVVHELPG 293
Query: 456 VGENLK 461
VGENL+
Sbjct: 294 VGENLQ 299
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 163/307 (53%), Gaps = 22/307 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
+D II+GA +AG VLA RL+E S + VLL+EAGG +++P + L ++
Sbjct: 3 YDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + N R++ GKGLGGSS + + Y RG + D++N+A + G W Y
Sbjct: 63 AYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWATMPGLEDWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYFRKAE-TRDVGSND---YHGATGPVSVATPKMGNNELFHAMVEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL G R NL ++ + K++ +
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPKGRRASTARGYLDQAKG-RKNLTIVTHALTDKILFEGKR 231
Query: 397 VATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y KGE+ + V A +EV+L AGAIA+ Q+L SG+GPK L + IPV DL
Sbjct: 232 -AVGVAYF--KGESPQTVQARREVLLCAGAIASPQILQRSGVGPKDLLQGLDIPVVHDLP 288
Query: 455 RVGENLK 461
VGENL+
Sbjct: 289 GVGENLQ 295
Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAIS 777
+IR T +P + MG +D AVV +V G++GLRV D S++P I +A +
Sbjct: 461 FIRTHAETAFHPSCSCKMG--EDEMAVVDGQGRVHGMEGLRVVDASIMPQIITGNLNATT 518
Query: 778 FLLL 781
++
Sbjct: 519 IMIA 522
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 161/307 (52%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD IIVGA +AG LA RL+E + VLL+EAGG +++P + L ++
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + R++ GKGLGGSS + + Y RG + DY+ +AKL G W Y
Sbjct: 65 AYETDPEPH----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG G + V K N + + E Q GYP
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGDGPVSVTTPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
+D+N Y GF + +T G R S A YL +A KR+ L ++ + KV+ +
Sbjct: 176 EDLNG-YQQEGFGPMDRTVTPNGRRASTARGYLD-VAKKRSTLTIVTHALTDKVLFEGKR 233
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y V + E V A KEVI+ +GAIA+ QLL SG+GP L+ + IPV DL
Sbjct: 234 -AVGVRYLVGAAEERVEARARKEVIVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G+V +KS DP P I ++ +D G + Q A+ G
Sbjct: 390 SMRSP-SRGRVQVKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDAFRGR 448
Query: 696 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 755
+S +E ++ +IR T +P + MG D AVV + +V G++
Sbjct: 449 EISPGIEV------QTDEQLDKFIREHAETAFHPSCSCKMGTDD--MAVVDGEGRVHGMQ 500
Query: 756 GLRVADISVLPNAIIT 771
GLRV D S++P IIT
Sbjct: 501 GLRVVDASIMP--IIT 514
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
+D IIVGA +AG LA RL+E + VLL+EAGG +++P + L ++
Sbjct: 5 YDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + R++ GKGLGGSS + + Y RG + DY+N+AKL G W Y
Sbjct: 65 AYETDPEPH----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDNWAKLPGLENWTY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG +G + V K N + + E Q GYP
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGEGPVSVTTPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T+ G R S A YL A KR+ L ++ + KV+ +
Sbjct: 176 DDLNG-YQQEGFGPMDRTVTKNGRRASTARGYLD-TAKKRSTLTIVTHALTDKVLFEGKR 233
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y + + E V A KEV++ +GAIA+ QLL SG+GP L+ + IPV DL
Sbjct: 234 -AVGVRYLIGAAEERVEARARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLP 292
Query: 455 RVGENLK 461
VGENL+
Sbjct: 293 GVGENLQ 299
Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIIT 771
+IR T +P + MG D AVV + +V G++GLRV D S++P IIT
Sbjct: 465 FIREHAETAFHPSCSCKMGT--DEMAVVDGEGRVHGMQGLRVVDASIMP--IIT 514
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+AK G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDCK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ D
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHD 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R T C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+AK G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDCK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ D
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHD 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R T C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 164/309 (53%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T +G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ D
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGSAELLAEFDIPLVHD 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R + C ++R+ T +P GT MG D AVV
Sbjct: 432 REIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 170/306 (55%), Gaps = 18/306 (5%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGM-SSVLSLSEFDHAYL 221
D +I+G+ +AG LA RLSE + V+++E GG D ++P + +S++ ++ YL
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
+EP + N RI GK +GGSS++ ++Y RG S D++ + +LG GW Y + L
Sbjct: 64 SEPE----PNLNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVL 119
Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
Y+ + E + + GT G P+ + + N + F + ++ G+ +D N
Sbjct: 120 PYYKRMEH----SHGGEEGWRGTDG--PLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYN 173
Query: 342 DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV 401
+ GF + T G R+SAA AYL P A KR N+ ++ R K++I + ATGV
Sbjct: 174 GSKQE-GFGLMEQTTWRGRRWSAASAYLRP-ALKRPNVELV-RCFARKIVI-ENGRATGV 229
Query: 402 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVGENL 460
E + G T V AN+EVI++A + + +LL+LSGIGP AHL E+ I VK D VG+NL
Sbjct: 230 E-IERGGRTEVVRANREVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNL 288
Query: 461 KLNAQF 466
+ + +F
Sbjct: 289 QDHMEF 294
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 641 KSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT----EAIRLAGGTL 696
KS G VTL+S+DP A P I +S PED + RL + +A L G
Sbjct: 384 KSRGDVTLRSSDPKADPVIRFNYMSHPEDWEKFR----HCVRLTREIFGQKAFDLYRGPE 439
Query: 697 MSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKG 756
+ + R+ ++R + +P GT MG DDP AVV P+ +V G+ G
Sbjct: 440 IQPGEKV------RTDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDG 493
Query: 757 LRVADISVLPN 767
LRVAD S+ P+
Sbjct: 494 LRVADSSIFPH 504
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 169/307 (55%), Gaps = 20/307 (6%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS--RIPGM-SSVLSLSEFDHAY 220
D II+G+ +AG LA+RLSE S V+++E GG T I ++P + +S++ ++ Y
Sbjct: 4 DYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGG-TDIGPFIQMPAALAWPMSMNRYNWGY 62
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
L+EP + N RI GK +GGSS++ ++Y RG + D++ + +LG GW Y +
Sbjct: 63 LSEPEPH----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADV 118
Query: 281 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 340
L YF + E + GT G P+ + + N + F + ++ G+ D
Sbjct: 119 LPYFKRMEHS----HGGEDGWRGTDG--PLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDY 172
Query: 341 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 400
N + GF + T G R+SAA AYL P A KR N+ ++ R K++I + ATG
Sbjct: 173 NGSKQE-GFGLMEQTTWRGRRWSAASAYLKP-ALKRPNVQLI-RCFARKIVI-ENGRATG 228
Query: 401 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVGEN 459
VE + G V AN+EVI++A + + +LL+LSGIGP AHL ++ I VK D VG+N
Sbjct: 229 VE-IERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQN 287
Query: 460 LKLNAQF 466
L+ + +F
Sbjct: 288 LQDHMEF 294
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 641 KSCGKVTLKSADPLAPPCIDTGILSEPEDLAT---LIRGTDYI---TRLEQTEAIRLAGG 694
KS G VTL+++DP A P I +S PED +R T I +Q + G
Sbjct: 384 KSRGSVTLRASDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDQYRGPEIQPG 443
Query: 695 TLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGI 754
+ + E ++R + +P GT MG+ DDP AVV P+ +V G+
Sbjct: 444 ERVQTDEEI------------DAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGV 491
Query: 755 KGLRVADISVLPN 767
GLRVAD S+ P+
Sbjct: 492 DGLRVADSSIFPH 504
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 164/309 (53%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T +G R S A YL A R+NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLD-QAKSRSNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGET---VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R ANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAGLLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAIS 777
++R+ T +P GT MG D +VV + +V G++GLRV D S++P I +A +
Sbjct: 463 FVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATT 520
Query: 778 FLL 780
++
Sbjct: 521 IMI 523
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R T C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R T C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R T C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R T C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRSTHSWT-C--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R T C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R + C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 162/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP + + N R++ GKGLGGSS + + Y RG + D +N+AK G W Y
Sbjct: 63 AYETEPEPY----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEHWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDIGPND---YHGGDGPVSVTTPKPGNNPLFEAMVEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL G R NL ++ +T II
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLDQARG-RPNL-TIRTHALTDHIIFAGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +GE+ + TANKEV+L AGAIA+ Q+L SG+G L + IPV D
Sbjct: 231 RAVGVEWL--EGESTIPSKATANKEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHD 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V LKS DP A P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRLKSRDPHAHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
+N A +Y R + C ++R+ T +P GT MG D AVV
Sbjct: 432 REIMNQPALDKYRGREISPGIECQSDAELDEFVRNHAETAFHPCGTCKMGY--DEMAVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 163/311 (52%), Gaps = 28/311 (9%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT--PIHSRIPGMSSVLSLSEFDHAYL 221
D +I+G+ +AG LA RLSE VL+IEAGG P ++ +S+ ++ YL
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
+EP + N RI GK +GGSS++ ++Y RG + D+ + +LG +GW Y + L
Sbjct: 64 SEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVL 119
Query: 282 KYFVKSEDYRSVIYNESKAVHGTQG--YLPVGLFKNKENNIIREIFETSAQELGYPCPKD 339
YF + E + + GT G ++ G F N + R E Q G+ +D
Sbjct: 120 PYFKRMEH----SHGGEEGWRGTDGPLHVQRGGFTNP---LFRAFIEAGKQ-AGFETTED 171
Query: 340 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTN---LYVLKRSKVTKVIINDQN 396
N + GF + G R+SAA+AYL P KR N +Y L R +++I +
Sbjct: 172 YNGSKQE-GFGLMEQTIFAGRRWSAANAYLKPAL-KRDNVGIVYGLAR----RIVI-ENG 224
Query: 397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-R 455
ATGVE + G T V AN+EVI++A + + +LL+LSGIGP HL E+ I VK D
Sbjct: 225 RATGVE-IERGGRTEVVKANREVIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKADRPG 283
Query: 456 VGENLKLNAQF 466
VG NL+ + +F
Sbjct: 284 VGANLQDHMEF 294
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 641 KSCGKVTLKSADPLAPPCIDTGILSEPEDLAT---LIRGTDYITRLEQTEAIRLAGGTLM 697
KS G VTL+S DP A P + +S PED +R T I + +A R G +
Sbjct: 384 KSRGSVTLRSPDPKADPVLRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDAYR--GPEIQ 441
Query: 698 -SLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKG 756
+++ Q ++R + +P GT MG DDP AVV P +V G+ G
Sbjct: 442 PGEGVQSDEQI--------DSFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDG 493
Query: 757 LRVADISVLPN 767
LRVAD S+ P+
Sbjct: 494 LRVADSSIFPH 504
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + + VLL+EAGG +++P + L ++
Sbjct: 5 FDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY +P + N R++ GKGLGGSS + + Y RG + D++N+AK G W Y
Sbjct: 65 AYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTY 120
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L YF K+E R + N+ HG G + V K N + + E Q GYP
Sbjct: 121 HDCLPYFRKAE-SRDIGPND---YHGGDGPVSVTTPKAGNNPLFHAMVEAGVQ-AGYPRT 175
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A +R NL ++ + +++ D
Sbjct: 176 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QARERPNLTIVTHATTDRILF-DGK 232
Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A+GV Y + + + A +EV+L AGAIA+ Q+L SG+GP A L E+ I + +L
Sbjct: 233 RASGVSYLIGNANDATEARARREVLLCAGAIASPQILQRSGVGPAALLRELDIALVHELP 292
Query: 455 RVGENLK 461
VG+NL+
Sbjct: 293 GVGQNLQ 299
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLA---TLIRGTDYITRLEQTEAIRLA 692
S+ +P S G++ LKS DP P I +S +D IR T I ++ R
Sbjct: 390 SMRSP-SRGRIQLKSKDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYR-- 446
Query: 693 GGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVK 752
G +S ++ C +S +IR T +P + MG +D AVV +V
Sbjct: 447 -GREISPGID-C-----QSDAELDAFIREHAETAFHPSCSCKMG--EDDMAVVDGQGRVH 497
Query: 753 GIKGLRVADISVLPNAIITQSDAISFLLL 781
G++GLRV D S++P I +A + ++
Sbjct: 498 GVQGLRVVDASIMPEIITGNLNATTIMMA 526
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 167/306 (54%), Gaps = 18/306 (5%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGM-SSVLSLSEFDHAYL 221
D +I+G+ +AG LA RLSE V+++E GG D ++P + +S++ ++ YL
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
+EP + N RI GK +GGSS++ ++Y RG S D+ + +LG GW Y + L
Sbjct: 64 SEPE----PNLNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVL 119
Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
Y+ + E + + GT G P+ + + N + F + +E G+ +D N
Sbjct: 120 PYYKRMEH----SHGGEEGWRGTDG--PLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYN 173
Query: 342 DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV 401
+ GF + T G R+SAA AYL P A KR N+ ++ R K++I + ATGV
Sbjct: 174 GSKQE-GFGLMEQTTWRGRRWSAASAYLRP-ALKRPNVELI-RCFARKIVI-ENGRATGV 229
Query: 402 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVGENL 460
E + G V AN+EVI++A + + +LL+LSGIGP AHL E+ I VK D VG+NL
Sbjct: 230 E-IERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNL 288
Query: 461 KLNAQF 466
+ + +F
Sbjct: 289 QDHMEF 294
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 26/137 (18%)
Query: 641 KSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT----------EAIR 690
KS G V+L+S+DP A P I +S PED + RL +
Sbjct: 384 KSRGNVSLRSSDPKADPVIRFNYMSHPEDWEKFR----HCVRLTREIFGQKAFDLYRGPE 439
Query: 691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 750
+ G + + E ++R + +P GT MG DDP AVV P+ +
Sbjct: 440 IQPGEKVQTDEEI------------DGFLREHLESAYHPCGTCKMGAKDDPMAVVDPETR 487
Query: 751 VKGIKGLRVADISVLPN 767
V G+ GLRVAD S+ P+
Sbjct: 488 VIGVDGLRVADSSIFPH 504
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDMGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R + C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDMGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R + C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 163/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDMGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A R NL ++ +T II D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPQGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIFDGK 230
Query: 397 VATGVEYVNSKGETV---RVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R TANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R + C ++R+ T +P GT MG D +VV
Sbjct: 432 REIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 GEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 19/304 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSEFDHA 219
+D IIVGA +AGCVLA+RLSE VLL+EAGG D I ++P + LS ++ +A
Sbjct: 5 YDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMP---TALSYPMNSEKYA 61
Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 279
+ E A L R R+ GK LGGSS++ ++Y RG + D++ + + G GW Y
Sbjct: 62 WQFETDAEADLDGR--RLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119
Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN-NIIREIFETSAQELGYPCPK 338
L YF ++E++ I E + G G L NK N + F + +E GYP
Sbjct: 120 CLPYFRRAENW---IDGEDE-YRGGDGPLST-CAGNKMTLNPLYRAFIDAGKEAGYPETS 174
Query: 339 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 398
D N Y GF + + G+R S ++AYL+ A KR+N ++K V ++++ ++ A
Sbjct: 175 DYNG-YQQEGFGPMHMTVKNGVRASTSNAYLS-RAKKRSNFKLIKGVVVQRILL-EEKRA 231
Query: 399 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PVKQDLRVG 457
GVE+ + GE A EVI +AG+I + QLL LSGIGPK L++ + PV VG
Sbjct: 232 VGVEFELA-GELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVHHLPGVG 290
Query: 458 ENLK 461
+NL+
Sbjct: 291 QNLQ 294
Score = 39.3 bits (90), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
+++ + +P + MG DDP AV+ + +V+GI LRV D SV P
Sbjct: 460 WVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFP 508
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 152/290 (52%), Gaps = 20/290 (6%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR----IPGMSSVLSLSEFDHA 219
D ++VG +AG V+A+RLS + V+ +EAG P +P S L SE D
Sbjct: 6 DYVVVGTGSAGAVVASRLSTDPATTVVALEAG---PRDKNRFIGVPAAFSKLFRSEIDWD 62
Query: 220 YLAEPS-QFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD 278
YL EP + G + R K+ LGGSS++ +++ RG + DY+ +A W Y
Sbjct: 63 YLTEPQPELDGREIYWPRGKV-----LGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYA 117
Query: 279 ETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 338
+ L YF + E+ + + S G G P+ + + + + + +A+E G+ +
Sbjct: 118 DVLGYFRRIENVTAAWHFVSGDDSGVTG--PLHISRQRSPRSVTAAWLAAARECGFAAAR 175
Query: 339 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 398
+ R GF E R G RFS ADAYL P A +R NL VL + T+V+I D + A
Sbjct: 176 PNSPRPE--GFCETVVTQRRGARFSTADAYLKP-AMRRKNLRVLTGATATRVVI-DGDRA 231
Query: 399 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 448
GVEY S G+T V A +EV+L AGA+ + QLL+LSGIG + HL E I
Sbjct: 232 VGVEY-QSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDI 280
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 35/159 (22%)
Query: 637 LVNPKSCGKVTLKSADPLAPPCIDTGILSE--PEDLATLIRGTDYITRLEQTEAIRLAGG 694
LV P+S G++TL+SADP A P I+ LS+ D A ++ G R+ Q +R G
Sbjct: 380 LVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDLLG 439
Query: 695 TLM-------------SLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDP 741
++ L L CS T Y +P+GT MG+ D
Sbjct: 440 SIARPRNSTELDEATLELALATCSH---------TLY---------HPMGTCRMGS--DE 479
Query: 742 NAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+VV P L+V+G+ GLRVAD SV+P+ + + A S L+
Sbjct: 480 ASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLI 518
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 152/290 (52%), Gaps = 20/290 (6%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR----IPGMSSVLSLSEFDHA 219
D ++VG +AG V+A+RLS + V+ +EAG P +P S L SE D
Sbjct: 6 DYVVVGTGSAGAVVASRLSTDPATTVVALEAG---PRDKNRFIGVPAAFSKLFRSEIDWD 62
Query: 220 YLAEPS-QFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD 278
YL EP + G + R K+ LGGSS++ +++ RG + DY+ +A W Y
Sbjct: 63 YLTEPQPELDGREIYWPRGKV-----LGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYA 117
Query: 279 ETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 338
+ L YF + E+ + + S G G P+ + + + + + +A+E G+ +
Sbjct: 118 DVLGYFRRIENVTAAWHFVSGDDSGVTG--PLHISRQRSPRSVTAAWLAAARECGFAAAR 175
Query: 339 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 398
+ R GF E R G RFS ADAYL P A +R NL VL + T+V+I D + A
Sbjct: 176 PNSPRPE--GFCETVVTQRRGARFSTADAYLKP-AMRRKNLRVLTGATATRVVI-DGDRA 231
Query: 399 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 448
GVEY S G+T V A +EV+L AGA+ + QLL+LSGIG + HL E I
Sbjct: 232 VGVEY-QSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDI 280
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 35/159 (22%)
Query: 637 LVNPKSCGKVTLKSADPLAPPCIDTGILSE--PEDLATLIRGTDYITRLEQTEAIRLAGG 694
LV P+S G++TL+SADP A P I+ LS+ D A ++ G R+ Q +R G
Sbjct: 380 LVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDLLG 439
Query: 695 TLM-------------SLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDP 741
++ L L CS T Y +P+GT MG+ D
Sbjct: 440 SIARPRNSTELDEATLELALATCSH---------TLY---------HPMGTCRMGS--DE 479
Query: 742 NAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+VV P L+V+G+ GLRVAD SV+P+ + + A S L+
Sbjct: 480 ASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLI 518
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
FD II+GA +AG VLA RL+E S + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDSDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP + + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPY----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAQQPGLERWTY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ KSE R + N+ HG G + + K N + + E Q GYP
Sbjct: 119 LDCLPYYRKSE-TRDIGAND---YHGGDGPVSITTCKPGNNPLFAAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL A +R NL ++ + +++ ++
Sbjct: 174 DDLNG-YQQEGFGPMDRFVTPKGRRSSTARGYLD-TAKQRPNLKIITHATTDRILFENKR 231
Query: 397 VATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
A GV Y++ T + V A +EV+L AGAIA+ Q+L SG+G L + IPV DL
Sbjct: 232 -AVGVAYLHGASNTPQEVHARREVLLCAGAIASPQILQRSGVGNAELLKQFDIPVVHDLP 290
Query: 455 RVGENLK 461
VGENL+
Sbjct: 291 GVGENLQ 297
Score = 41.2 bits (95), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
++R+ T +P GT MG+ D AVV + +V G++GLRV D S++P
Sbjct: 463 FVRNHAETAYHPCGTCKMGS--DEMAVVDDEGRVHGLEGLRVVDASIMP 509
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 166/312 (53%), Gaps = 30/312 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFET---SAQELGY 334
+ L Y+ K+E R V N+ HG G PV + +K + +FE + + GY
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDG--PVSVITSKPG--VNPLFEAMIEAGMQAGY 170
Query: 335 PCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 393
P D+N Y GF + +T +G R S A YL A R NL ++ +T II
Sbjct: 171 PRTDDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIIF 227
Query: 394 DQNVATGVEYVNSKGET---VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
D A GVE++ +G++ R ANKEV+L AGAIA+ Q+L SG+G L E IP+
Sbjct: 228 DGKRAVGVEWL--EGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPL 285
Query: 451 KQDL-RVGENLK 461
+L VGENL+
Sbjct: 286 VHELPGVGENLQ 297
Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLAT---LIRGTDYITRLEQTEAIRLA 692
S+ +P S G V +KS DP P I +S +D IR T I + R
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRTTREIMHQPALDQYR-- 444
Query: 693 GGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVK 752
G +S +E C ++ ++R+ T +P GT MG D AVV + +V
Sbjct: 445 -GREISPGVE-C-----QTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDGEGRVH 495
Query: 753 GIKGLRVADISVLPNAIITQSDAISFLL 780
G++GLRV D S++P I +A + ++
Sbjct: 496 GLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 160/313 (51%), Gaps = 32/313 (10%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT--PIHSRIPGMSSVLSLSEFDHAYL 221
D +IVG+ +AG +A RLSE V++IEAGG P ++ +S+ ++ YL
Sbjct: 4 DYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
+EP + N RI GK +GGSS++ ++Y RG + D+ + +LG GW Y + L
Sbjct: 64 SEPEPN----LDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVL 119
Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
YF + E + + GT G P+ + + +N + F + + G+ D N
Sbjct: 120 PYFKRMEH----SHGGEEGWRGTDG--PLHVQRGPVSNPLFHAFIQAGAQAGFELTDDYN 173
Query: 342 DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT-------KVIIND 394
+ GF + G R+SAA+AYL P LKR VT KVII +
Sbjct: 174 GSKQE-GFGLMEQTIHNGRRWSAANAYLKP---------ALKRGNVTLVNGFARKVII-E 222
Query: 395 QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 454
A GVE + +G V AN+EVI++A + + +LL+LSGIGP AHL ++ I VK D
Sbjct: 223 NGRAVGVE-IERRGRVETVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADR 281
Query: 455 -RVGENLKLNAQF 466
VG NL+ + +F
Sbjct: 282 PGVGANLQDHMEF 294
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 641 KSCGKVTLKSADPLAPPCIDTGILSEPEDLAT---LIRGTDYITRL--EQTEAIRLAGGT 695
KS G VTL+SADP P I +S PED +R +TR Q G
Sbjct: 384 KSRGNVTLRSADPHDDPVIRFNYMSHPEDWEKFRHCVR----LTREIFGQKAFDDFRGPE 439
Query: 696 LM-SLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGI 754
+ N+E Q ++R + +P GT MG+ +DP AVV P+ +V G+
Sbjct: 440 IQPGENIETDEQI--------DAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGV 491
Query: 755 KGLRVADISVLPN 767
+GLRVAD S+ P+
Sbjct: 492 EGLRVADSSIFPH 504
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 159/315 (50%), Gaps = 36/315 (11%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT--PIHSRIPGMSSVLSLSEFDHAYL 221
D +I+G+ +AG LA RLSE VL+IEAGG P ++ +S+ ++ YL
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
+EP + N RI GK +GGSS++ ++Y RG + D+ + +LG GW Y + L
Sbjct: 64 SEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVL 119
Query: 282 KYFVKSEDYRSVIYNESKAVHGTQG--YLPVGLFKNKENNIIREIFETSAQELGYPCPKD 339
YF + E + + GT G ++ G F N + R E Q G+ +D
Sbjct: 120 PYFKRMEH----SHGGEEGWRGTDGPLHVQRGGFTNP---LFRAFVEAGKQ-AGFETTED 171
Query: 340 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT-------KVII 392
N + GF + G R+SAA+AYL P LKR V +++I
Sbjct: 172 YNGSKQE-GFGLMEQTIFSGRRWSAANAYLKP---------ALKRKNVEIIYGFAQRIVI 221
Query: 393 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 452
D ATGVE + G+ V AN+EVI++A + + +LL+LSGIGP HL E+ I VK
Sbjct: 222 ED-GRATGVE-IERGGKIEVVKANREVIVSASSFNSPKLLMLSGIGPGEHLKEMGIEVKA 279
Query: 453 DL-RVGENLKLNAQF 466
D VG NL+ + +F
Sbjct: 280 DRPGVGANLQDHMEF 294
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 641 KSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLN 700
KS G VTL+S DP A P + +S ED + RL R G +
Sbjct: 384 KSRGSVTLRSPDPKADPVLRFNYMSHAEDWEKFR----HCVRL-----TRELFGQAAFDD 434
Query: 701 LEACSQYPWRSTHSWT---CYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGL 757
P S S ++R + +P GT MG DDP AVV P +V G++ L
Sbjct: 435 YRGAEIQPGESVQSDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEAL 494
Query: 758 RVADISVLPN 767
RVAD S+ P+
Sbjct: 495 RVADSSIFPH 504
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 19/304 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSEFDHA 219
+D IIVGA +AGCVLA+RLSE VLL+EAGG D I ++P + LS ++ +A
Sbjct: 5 YDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMP---TALSYPMNSEKYA 61
Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 279
+ E A L R R+ GK LGGSS++ ++Y RG + D++ + + G GW Y
Sbjct: 62 WQFETDAEADLDGR--RLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119
Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN-NIIREIFETSAQELGYPCPK 338
L YF ++E++ I E + G G L NK N + F + +E GYP
Sbjct: 120 CLPYFRRAENW---IDGEDE-YRGGDGPLST-CAGNKMTLNPLYRAFIDAGKEAGYPETS 174
Query: 339 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 398
D N Y GF + + G+R S ++AYL+ A KR+N ++K V ++++ ++ A
Sbjct: 175 DYNG-YQQEGFGPMHMTVKNGVRASTSNAYLS-RAKKRSNFKLIKGVVVQRILL-EEKRA 231
Query: 399 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PVKQDLRVG 457
GVE+ + GE A EVI +AG+I + QLL LSGIGPK L++ + PV VG
Sbjct: 232 VGVEFELA-GELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVG 290
Query: 458 ENLK 461
+NL+
Sbjct: 291 QNLQ 294
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 640 PKSCGKVTLKSADPLAPPCIDTGILS---EPEDLATLIRGTDYITR-------LEQTEAI 689
P+S G+V + SA+PL P I LS + +D IR +TR +++
Sbjct: 388 PESRGRVEIVSANPLDKPKIQFNYLSTERDRQDWRDCIR----LTREILAQPAMDEFRGE 443
Query: 690 RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDL 749
+ G ++ + E W ++ + +P + MG DDP AV+ +
Sbjct: 444 EIQPGINVATDAE---------IDQW---VKENVESAYHPSCSCKMGADDDPMAVLDEEC 491
Query: 750 KVKGIKGLRVADISVLP 766
+V+GI LRV D SV P
Sbjct: 492 RVRGITNLRVVDSSVFP 508
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 162/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T +G R S A YL A R NL ++ +T I D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIFFDGK 230
Query: 397 VATGVEYVNSKGET---VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R ANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R + C ++R+ T +P GT MG D AVV
Sbjct: 432 REIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 AEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 162/309 (52%), Gaps = 24/309 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
FD II+GA +AG VLA RL+E + VLL+EAGG +++P + L ++
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNW 62
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
AY EP F + N R++ GKGLGGSS + + Y RG + D +N+A+ G W Y
Sbjct: 63 AYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSY 118
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R V N+ HG G + V K N + + E Q GYP
Sbjct: 119 LDCLPYYRKAE-TRDVGEND---YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQ-AGYPRT 173
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T +G R S A YL A R NL ++ +T I D
Sbjct: 174 DDLNG-YQQEGFGPMDRTVTPHGRRASTARGYLD-QAKSRPNL-TIRTHAMTDHIFFDGK 230
Query: 397 VATGVEYVNSKGET---VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
A GVE++ +G++ R ANKEV+L AGAIA+ Q+L SG+G L E IP+ +
Sbjct: 231 RAVGVEWL--EGDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHE 288
Query: 454 L-RVGENLK 461
L VGENL+
Sbjct: 289 LPGVGENLQ 297
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
S+ +P S G V +KS DP P I +S +D +AIR+ T
Sbjct: 388 SMRSP-SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEF------------RDAIRI---T 431
Query: 696 LMSLNLEACSQYPWRS-THSWTC--------YIRHLTTTTSNPVGTVMMGNADDPNAVVT 746
++ A QY R + C ++R+ T +P GT MG D AVV
Sbjct: 432 REIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVD 489
Query: 747 PDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
+ +V G++GLRV D S++P I +A + ++
Sbjct: 490 AEGRVHGLEGLRVVDASIMPQIITGNLNATTIMI 523
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 21/308 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
+D II+GA +AG VLA RL+E VLL+EAGG +++P + L ++
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFA-KLGYNGWGY 277
AYL +P + N R++ GKGLGGSS + + Y RG + D E +A G W Y
Sbjct: 66 AYLTDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V KN N + + E Q GYP
Sbjct: 122 ADCLPYYKKAE-TRDIGGND---YHGDSGPVSVATPKNGNNVLFHAMVEAGVQ-AGYPRT 176
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL +A R NL +L + K++ N Q
Sbjct: 177 DDLNG-YQQEGFGPMDRTVTPKGRRSSTARGYLD-MAKGRPNLTILTHATTNKILFN-QK 233
Query: 397 VATGVEYVNSKGET--VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 454
A GVEY+ + R +EV+L AGAIA+ Q+L SG+G L + I V DL
Sbjct: 234 QAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDL 293
Query: 455 -RVGENLK 461
VGENL+
Sbjct: 294 PGVGENLQ 301
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-------LEQTEA 688
S+ +P S G++ LKS DP A P I +S +D R ITR L+
Sbjct: 392 SMRSP-SRGRIKLKSKDPFAHPSILFNYMSTEQDWREF-RDAIRITREIMHQPALDPYRG 449
Query: 689 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 748
++ G + + E ++R+ T +P + MG +D AVV
Sbjct: 450 DEISPGKHLQTDAELDD------------FVRNHAETAYHPSCSCKMG--EDEMAVVDGQ 495
Query: 749 LKVKGIKGLRVADISVLP 766
+V G+ GLRV D S++P
Sbjct: 496 GRVHGMNGLRVVDASIMP 513
>sp|B0VST3|BETA_ACIBS Choline dehydrogenase OS=Acinetobacter baumannii (strain SDF)
GN=betA PE=3 SV=1
Length = 552
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 21/308 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
+D II+GA +AG VLA RL+E VLL+EAGG +++P + L ++
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFA-KLGYNGWGY 277
AYL +P + N R++ GKGLGGSS + + Y RG + D E +A G W Y
Sbjct: 66 AYLTDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V KN N + + E Q GYP
Sbjct: 122 ADCLPYYKKAE-TRDIGGND---YHGDSGPVSVATPKNGNNVLFHAMVEAGVQ-AGYPRT 176
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL +A R NL +L + K++ N Q
Sbjct: 177 DDLNG-YQQEGFGPMDRTVTPKGRRSSTARGYLD-MAKGRPNLTILTHATTNKILFN-QK 233
Query: 397 VATGVEYVNSKGET--VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 454
A GVEY+ + R +EV+L AGAIA+ Q+L SG+G L + I V DL
Sbjct: 234 QAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDL 293
Query: 455 -RVGENLK 461
VGENL+
Sbjct: 294 PGVGENLQ 301
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-------LEQTEA 688
S+ +P S G++ LKS DP A P I +S +D R ITR L+
Sbjct: 392 SMRSP-SRGRIKLKSKDPFAHPSILFNYMSTEQDWREF-RDAIRITREIMHQPALDPYRG 449
Query: 689 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 748
++ G + + E ++R+ T +P + MG +D AVV
Sbjct: 450 DEISPGKHLQTDAELDD------------FVRNHAETAYHPSCSCKMG--EDEMAVVDGQ 495
Query: 749 LKVKGIKGLRVADISVLP 766
+V G+ GLRV D S++P
Sbjct: 496 GRVHGMNGLRVVDASIMP 513
>sp|B2HV79|BETA_ACIBC Choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU)
GN=betA PE=3 SV=1
Length = 552
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 21/308 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
+D II+GA +AG VLA RL+E VLL+EAGG +++P + L ++
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFA-KLGYNGWGY 277
AYL +P + N R++ GKGLGGSS + + Y RG + D E +A G W Y
Sbjct: 66 AYLTDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V KN N + + E Q GYP
Sbjct: 122 ADCLPYYKKAE-TRDIGGND---YHGDSGPVSVATPKNGNNVLFHAMVEAGVQ-AGYPRT 176
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL +A R NL +L + K++ N Q
Sbjct: 177 DDLNG-YQQEGFGPMDRTVTPKGRRSSTARGYLD-MAKGRPNLTILTHATTNKILFN-QK 233
Query: 397 VATGVEYVNSKGET--VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 454
A GVEY+ + R +EV+L AGAIA+ Q+L SG+G L + I V DL
Sbjct: 234 QAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDL 293
Query: 455 -RVGENLK 461
VGENL+
Sbjct: 294 PGVGENLQ 301
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-------LEQTEA 688
S+ +P S G++ LKS DP A P I +S +D R ITR L+
Sbjct: 392 SMRSP-SRGRIKLKSKDPFAHPSILFNYMSTEQDWREF-RDAIRITREIMHQPALDPYRG 449
Query: 689 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 748
++ G + + E ++R+ T +P + MG +D AVV
Sbjct: 450 DEISPGKHLQTDAELDD------------FVRNHAETAYHPSCSCKMG--EDEMAVVDGQ 495
Query: 749 LKVKGIKGLRVADISVLP 766
+V G+ GLRV D S++P
Sbjct: 496 GRVHGMNGLRVVDASIMP 513
>sp|B7I895|BETA_ACIB5 Choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057)
GN=betA PE=3 SV=1
Length = 552
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 21/308 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
+D II+GA +AG VLA RL+E VLL+EAGG +++P + L ++
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFA-KLGYNGWGY 277
AYL +P + N R++ GKGLGGSS + + Y RG + D E +A G W Y
Sbjct: 66 AYLTDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V KN N + + E Q GYP
Sbjct: 122 ADCLPYYKKAE-TRDIGGND---YHGDSGPVSVATPKNGNNVLFHAMVEAGVQ-AGYPRT 176
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL +A R NL +L + K++ N Q
Sbjct: 177 DDLNG-YQQEGFGPMDRTVTPKGRRSSTARGYLD-MAKGRPNLTILTHATTNKILFN-QK 233
Query: 397 VATGVEYVNSKGET--VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 454
A GVEY+ + R +EV+L AGAIA+ Q+L SG+G L + I V DL
Sbjct: 234 QAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDL 293
Query: 455 -RVGENLK 461
VGENL+
Sbjct: 294 PGVGENLQ 301
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-------LEQTEA 688
S+ +P S G++ LKS DP A P I +S +D R ITR L+
Sbjct: 392 SMRSP-SRGRIKLKSKDPFAHPSILFNYMSTEQDWREF-RDAIRITREIMHQPALDPYRG 449
Query: 689 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 748
++ G + + E ++R+ T +P + MG +D AVV
Sbjct: 450 DEISPGKHLQTDAELDD------------FVRNHAETAYHPSCSCKMG--EDEMAVVDGQ 495
Query: 749 LKVKGIKGLRVADISVLP 766
+V G+ GLRV D S++P
Sbjct: 496 GRVHGMNGLRVVDASIMP 513
>sp|B7GYG5|BETA_ACIB3 Choline dehydrogenase OS=Acinetobacter baumannii (strain
AB307-0294) GN=betA PE=3 SV=1
Length = 552
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 21/308 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
+D II+GA +AG VLA RL+E VLL+EAGG +++P + L ++
Sbjct: 6 YDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFA-KLGYNGWGY 277
AYL +P + N R++ GKGLGGSS + + Y RG + D E +A G W Y
Sbjct: 66 AYLTDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENWTY 121
Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
+ L Y+ K+E R + N+ HG G + V KN N + + E Q GYP
Sbjct: 122 ADCLPYYKKAE-TRDIGGND---YHGDSGPVSVATPKNGNNVLFHAMVEAGVQ-AGYPRT 176
Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
D+N Y GF + +T G R S A YL +A R NL +L + K++ N Q
Sbjct: 177 DDLNG-YQQEGFGPMDRTVTPKGRRSSTARGYLD-MAKGRPNLTILTHATTNKILFN-QK 233
Query: 397 VATGVEYVNSKGET--VRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 454
A GVEY+ + R +EV+L AGAIA+ Q+L SG+G L + I V DL
Sbjct: 234 QAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDL 293
Query: 455 -RVGENLK 461
VGENL+
Sbjct: 294 PGVGENLQ 301
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 636 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR-------LEQTEA 688
S+ +P S G++ LKS DP A P I +S +D R ITR L+
Sbjct: 392 SMRSP-SRGRIKLKSKDPFAHPSILFNYMSTEQDWREF-RDAIRITREIMHQPALDPYRG 449
Query: 689 IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPD 748
++ G + + E ++R+ T +P + MG +D AVV
Sbjct: 450 DEISPGKHLQTDAELDD------------FVRNHAETAYHPSCSCKMG--EDEMAVVDGQ 495
Query: 749 LKVKGIKGLRVADISVLP 766
+V G+ GLRV D S++P
Sbjct: 496 GRVHGMNGLRVVDASIMP 513
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.339 0.157 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,703,921
Number of Sequences: 539616
Number of extensions: 21910417
Number of successful extensions: 386794
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 323
Number of HSP's that attempted gapping in prelim test: 347798
Number of HSP's gapped (non-prelim): 15581
length of query: 1381
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1251
effective length of database: 121,419,379
effective search space: 151895643129
effective search space used: 151895643129
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 68 (30.8 bits)