Query psy11618
Match_columns 1381
No_of_seqs 242 out of 1450
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 23:14:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 2E-131 4E-136 1165.9 44.3 558 148-781 41-605 (623)
2 TIGR01810 betA choline dehydro 100.0 2E-103 4E-108 930.6 46.2 515 164-783 1-521 (532)
3 PRK02106 choline dehydrogenase 100.0 2E-101 4E-106 919.2 46.9 517 160-783 3-526 (560)
4 PLN02785 Protein HOTHEAD 100.0 9.6E-92 2.1E-96 842.4 39.7 497 160-784 53-572 (587)
5 COG2303 BetA Choline dehydroge 100.0 2.1E-91 4.6E-96 833.0 36.8 518 159-782 4-527 (542)
6 PF00732 GMC_oxred_N: GMC oxid 100.0 6.6E-66 1.4E-70 562.5 15.7 290 163-464 1-295 (296)
7 TIGR02462 pyranose_ox pyranose 100.0 2.4E-47 5.3E-52 454.6 35.5 482 163-782 1-533 (544)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1E-36 2.2E-41 301.1 10.9 141 640-782 1-142 (144)
9 PRK07121 hypothetical protein; 99.3 1.1E-10 2.3E-15 139.2 20.6 58 375-433 188-246 (492)
10 PRK12837 3-ketosteroid-delta-1 99.2 2.5E-10 5.5E-15 137.2 18.2 64 368-434 179-243 (513)
11 PRK08274 tricarballylate dehyd 99.2 2.6E-10 5.6E-15 134.5 17.9 63 375-439 142-204 (466)
12 PRK12835 3-ketosteroid-delta-1 99.2 2.3E-10 5E-15 139.8 18.0 59 375-434 224-283 (584)
13 PF01266 DAO: FAD dependent ox 99.1 2.1E-10 4.5E-15 126.4 10.9 55 375-437 158-212 (358)
14 PRK12844 3-ketosteroid-delta-1 99.1 6.1E-10 1.3E-14 135.4 15.3 57 375-433 219-276 (557)
15 PRK12845 3-ketosteroid-delta-1 99.1 1E-09 2.2E-14 133.8 16.0 57 375-433 228-285 (564)
16 PF00890 FAD_binding_2: FAD bi 99.1 1.8E-09 3.8E-14 125.0 15.5 56 375-433 152-208 (417)
17 PRK06175 L-aspartate oxidase; 99.0 3.6E-09 7.9E-14 125.0 15.2 51 375-428 140-190 (433)
18 PRK11101 glpA sn-glycerol-3-ph 99.0 5.9E-09 1.3E-13 126.6 16.9 60 375-437 160-220 (546)
19 TIGR01813 flavo_cyto_c flavocy 99.0 8.3E-09 1.8E-13 120.9 17.5 57 375-432 141-198 (439)
20 PRK06854 adenylylsulfate reduc 99.0 1.1E-08 2.5E-13 125.7 17.8 51 375-427 144-195 (608)
21 PRK07843 3-ketosteroid-delta-1 99.0 9.7E-09 2.1E-13 125.0 16.6 57 375-433 219-275 (557)
22 PRK12842 putative succinate de 98.9 2.4E-08 5.2E-13 121.9 19.5 55 375-431 225-279 (574)
23 PRK06134 putative FAD-binding 98.9 2.2E-08 4.7E-13 122.6 18.6 56 375-432 228-283 (581)
24 PRK08275 putative oxidoreducta 98.9 1.2E-08 2.5E-13 124.1 16.1 52 375-427 148-200 (554)
25 PRK06263 sdhA succinate dehydr 98.9 1.8E-08 4E-13 122.0 17.7 53 375-428 145-198 (543)
26 PRK12843 putative FAD-binding 98.9 3.5E-08 7.5E-13 120.7 18.2 57 375-433 232-289 (578)
27 PTZ00306 NADH-dependent fumara 98.9 1.7E-08 3.7E-13 132.1 16.4 53 376-429 559-622 (1167)
28 PRK05257 malate:quinone oxidor 98.9 2.1E-08 4.6E-13 120.8 15.9 68 367-438 188-256 (494)
29 PLN00128 Succinate dehydrogena 98.9 2.8E-08 6E-13 123.0 16.5 54 375-429 198-252 (635)
30 PRK12839 hypothetical protein; 98.9 3.7E-08 8E-13 120.6 17.1 56 375-431 225-281 (572)
31 PRK06481 fumarate reductase fl 98.9 3.6E-08 7.9E-13 118.7 16.4 58 375-434 201-259 (506)
32 COG0579 Predicted dehydrogenas 98.8 2.6E-08 5.6E-13 118.1 14.5 65 367-440 158-223 (429)
33 PRK07395 L-aspartate oxidase; 98.8 3.1E-08 6.8E-13 120.7 15.5 52 375-428 146-198 (553)
34 PTZ00139 Succinate dehydrogena 98.8 5.1E-08 1.1E-12 120.3 17.0 53 375-428 177-230 (617)
35 TIGR01373 soxB sarcosine oxida 98.8 3E-08 6.4E-13 114.7 14.1 56 375-437 194-249 (407)
36 PRK08958 sdhA succinate dehydr 98.8 4.3E-08 9.4E-13 120.3 15.7 53 375-428 154-207 (588)
37 PRK06452 sdhA succinate dehydr 98.8 6.4E-08 1.4E-12 118.3 17.0 51 375-427 147-198 (566)
38 PRK07804 L-aspartate oxidase; 98.8 8.7E-08 1.9E-12 116.5 17.8 52 375-427 155-210 (541)
39 PRK07573 sdhA succinate dehydr 98.8 8.6E-08 1.9E-12 118.8 17.8 52 375-428 181-233 (640)
40 PRK09078 sdhA succinate dehydr 98.8 6E-08 1.3E-12 119.2 16.3 53 375-428 160-213 (598)
41 PRK08641 sdhA succinate dehydr 98.8 7.1E-08 1.5E-12 118.4 16.8 51 377-428 150-201 (589)
42 PRK12409 D-amino acid dehydrog 98.8 3.7E-08 8E-13 114.1 13.3 34 163-197 2-35 (410)
43 PRK08071 L-aspartate oxidase; 98.8 9E-08 1.9E-12 115.6 16.9 51 376-428 141-191 (510)
44 TIGR01812 sdhA_frdA_Gneg succi 98.8 7.2E-08 1.6E-12 117.2 15.9 52 375-428 140-192 (566)
45 PRK13800 putative oxidoreducta 98.8 9.9E-08 2.1E-12 122.2 17.8 50 376-427 155-205 (897)
46 PRK05945 sdhA succinate dehydr 98.8 6.8E-08 1.5E-12 118.1 15.6 52 375-428 146-198 (575)
47 PRK12834 putative FAD-binding 98.8 8.1E-08 1.8E-12 116.7 15.3 57 376-434 164-235 (549)
48 PRK09077 L-aspartate oxidase; 98.8 1.4E-07 3.1E-12 114.4 17.2 53 375-428 150-208 (536)
49 TIGR01320 mal_quin_oxido malat 98.7 5.3E-08 1.1E-12 117.1 12.8 62 375-439 189-251 (483)
50 PRK07057 sdhA succinate dehydr 98.7 2E-07 4.3E-12 114.6 17.8 53 375-428 159-212 (591)
51 PRK00711 D-amino acid dehydrog 98.7 5E-08 1.1E-12 112.7 11.9 33 164-197 2-34 (416)
52 PRK09231 fumarate reductase fl 98.7 2.3E-07 4.9E-12 113.9 18.2 52 375-428 145-197 (582)
53 PLN02815 L-aspartate oxidase 98.7 1.7E-07 3.6E-12 115.5 17.0 53 375-428 167-223 (594)
54 PRK08205 sdhA succinate dehydr 98.7 2.2E-07 4.8E-12 113.9 17.8 53 375-428 151-207 (583)
55 PTZ00383 malate:quinone oxidor 98.7 1.8E-07 3.8E-12 113.1 16.4 54 378-439 231-284 (497)
56 PRK11728 hydroxyglutarate oxid 98.7 1.1E-07 2.4E-12 110.0 14.2 36 162-197 2-38 (393)
57 TIGR01176 fum_red_Fp fumarate 98.7 2E-07 4.3E-12 114.4 17.1 52 375-428 144-196 (580)
58 PRK06069 sdhA succinate dehydr 98.7 2.7E-07 5.8E-12 112.9 16.9 52 375-428 149-201 (577)
59 TIGR00551 nadB L-aspartate oxi 98.7 3.6E-07 7.9E-12 109.5 17.5 51 375-428 140-190 (488)
60 PRK08626 fumarate reductase fl 98.7 1.9E-07 4.2E-12 116.1 15.6 52 375-428 169-221 (657)
61 TIGR01377 soxA_mon sarcosine o 98.7 2.7E-07 5.8E-12 105.1 15.4 33 163-196 1-33 (380)
62 PRK07512 L-aspartate oxidase; 98.7 2.4E-07 5.1E-12 112.1 15.5 51 375-428 148-198 (513)
63 PRK13339 malate:quinone oxidor 98.7 2.1E-07 4.6E-12 112.5 14.3 70 366-439 188-258 (497)
64 PRK10157 putative oxidoreducta 98.6 1.9E-07 4.1E-12 110.2 13.4 37 160-197 3-39 (428)
65 PLN02464 glycerol-3-phosphate 98.6 4.1E-07 9E-12 112.6 16.5 60 375-436 243-304 (627)
66 TIGR03329 Phn_aa_oxid putative 98.6 1.8E-07 3.9E-12 111.0 12.4 38 159-196 21-59 (460)
67 PF06039 Mqo: Malate:quinone o 98.6 7.2E-07 1.6E-11 106.1 17.0 67 368-438 187-254 (488)
68 PTZ00363 rab-GDP dissociation 98.6 5.3E-07 1.1E-11 107.7 16.1 38 160-198 2-39 (443)
69 PLN02661 Putative thiazole syn 98.6 2.7E-07 5.9E-12 107.3 13.2 38 159-196 89-126 (357)
70 TIGR01811 sdhA_Bsu succinate d 98.6 4.8E-07 1E-11 111.6 16.1 52 376-428 145-197 (603)
71 PRK07803 sdhA succinate dehydr 98.6 5.9E-07 1.3E-11 111.2 16.8 49 378-428 165-214 (626)
72 TIGR02061 aprA adenosine phosp 98.6 6.5E-07 1.4E-11 110.8 16.5 51 376-427 138-191 (614)
73 PRK11259 solA N-methyltryptoph 98.6 7.5E-07 1.6E-11 101.4 15.5 35 161-196 2-36 (376)
74 PRK13977 myosin-cross-reactive 98.6 7.6E-07 1.6E-11 108.9 16.0 66 363-428 223-294 (576)
75 PRK01747 mnmC bifunctional tRN 98.5 4.4E-07 9.6E-12 112.6 13.2 34 162-196 260-293 (662)
76 COG1053 SdhA Succinate dehydro 98.5 3.4E-07 7.5E-12 112.1 11.7 86 375-466 150-241 (562)
77 KOG1298|consensus 98.5 2.2E-07 4.7E-12 107.7 9.2 39 157-196 40-78 (509)
78 PF03486 HI0933_like: HI0933-l 98.5 1E-07 2.2E-12 112.8 6.4 50 375-430 120-169 (409)
79 COG2081 Predicted flavoprotein 98.5 6.8E-07 1.5E-11 104.6 12.3 38 161-199 2-39 (408)
80 TIGR03364 HpnW_proposed FAD de 98.5 1.2E-06 2.5E-11 99.9 13.2 33 163-196 1-33 (365)
81 PRK10015 oxidoreductase; Provi 98.5 7.8E-07 1.7E-11 105.3 11.8 37 160-197 3-39 (429)
82 COG0578 GlpA Glycerol-3-phosph 98.5 8.2E-07 1.8E-11 107.7 11.8 77 358-442 162-239 (532)
83 PRK04176 ribulose-1,5-biphosph 98.4 1.2E-06 2.6E-11 97.7 12.1 37 159-196 22-58 (257)
84 PF12831 FAD_oxidored: FAD dep 98.4 2.7E-07 5.8E-12 109.0 5.5 57 375-437 101-157 (428)
85 PRK06185 hypothetical protein; 98.4 3.9E-06 8.4E-11 97.1 14.1 60 375-439 120-179 (407)
86 TIGR02485 CobZ_N-term precorri 98.4 4E-06 8.6E-11 98.8 14.3 54 375-432 134-188 (432)
87 PRK05329 anaerobic glycerol-3- 98.3 3.2E-06 7E-11 100.6 12.8 53 375-431 270-322 (422)
88 PRK08401 L-aspartate oxidase; 98.3 4.9E-06 1.1E-10 99.6 14.4 33 163-196 2-34 (466)
89 PRK07364 2-octaprenyl-6-methox 98.3 4.2E-06 9.2E-11 96.9 13.2 38 159-197 15-52 (415)
90 PRK12266 glpD glycerol-3-phosp 98.3 4.3E-07 9.3E-12 109.7 5.3 59 375-437 166-226 (508)
91 TIGR00292 thiazole biosynthesi 98.3 2.8E-06 6E-11 94.8 11.2 36 160-196 19-54 (254)
92 PRK13369 glycerol-3-phosphate 98.3 3.3E-06 7.1E-11 101.8 12.6 55 375-433 166-220 (502)
93 COG3573 Predicted oxidoreducta 98.3 3.8E-06 8.3E-11 96.2 10.7 38 160-198 3-40 (552)
94 TIGR02730 carot_isom carotene 98.3 4.9E-06 1.1E-10 99.8 12.0 52 375-432 240-291 (493)
95 COG0029 NadB Aspartate oxidase 98.2 1.1E-05 2.4E-10 96.6 14.6 58 368-427 139-196 (518)
96 PLN02985 squalene monooxygenas 98.2 9.8E-06 2.1E-10 98.5 14.4 37 159-196 40-76 (514)
97 PRK05192 tRNA uridine 5-carbox 98.2 6.5E-06 1.4E-10 101.7 11.6 35 161-196 3-37 (618)
98 PRK07208 hypothetical protein; 98.2 2.2E-05 4.7E-10 93.3 15.5 56 376-432 230-285 (479)
99 COG1233 Phytoene dehydrogenase 98.2 4.9E-06 1.1E-10 100.3 9.7 36 161-197 2-37 (487)
100 COG0665 DadA Glycine/D-amino a 98.2 3.2E-05 6.9E-10 88.3 15.6 37 161-198 3-39 (387)
101 TIGR01292 TRX_reduct thioredox 98.2 9.8E-06 2.1E-10 88.7 10.9 58 375-435 188-246 (300)
102 TIGR02734 crtI_fam phytoene de 98.2 5.5E-06 1.2E-10 99.1 9.5 53 375-433 230-282 (502)
103 PRK15317 alkyl hydroperoxide r 98.1 1.6E-05 3.5E-10 96.3 11.5 59 375-435 398-457 (517)
104 KOG2404|consensus 98.1 1.8E-05 4E-10 90.6 10.9 47 379-427 160-206 (477)
105 PRK06183 mhpA 3-(3-hydroxyphen 98.0 4.8E-05 1E-09 92.4 13.8 37 160-197 8-44 (538)
106 TIGR02733 desat_CrtD C-3',4' d 98.0 4E-05 8.7E-10 91.7 12.8 56 375-432 243-299 (492)
107 PRK06126 hypothetical protein; 98.0 0.00012 2.6E-09 88.9 16.9 37 159-196 4-40 (545)
108 TIGR01350 lipoamide_DH dihydro 98.0 3.8E-05 8.1E-10 91.0 12.3 32 162-194 1-32 (461)
109 TIGR03140 AhpF alkyl hydropero 98.0 5E-05 1.1E-09 92.1 13.1 58 375-434 399-457 (515)
110 COG0644 FixC Dehydrogenases (f 98.0 7.4E-06 1.6E-10 95.8 5.7 37 161-198 2-38 (396)
111 TIGR03378 glycerol3P_GlpB glyc 98.0 6.9E-06 1.5E-10 97.7 5.4 69 359-435 262-330 (419)
112 TIGR00275 flavoprotein, HI0933 97.9 2E-05 4.4E-10 92.6 7.9 31 166-197 1-31 (400)
113 PRK07233 hypothetical protein; 97.9 0.00012 2.5E-09 84.9 13.9 34 164-198 1-34 (434)
114 TIGR02731 phytoene_desat phyto 97.9 0.00013 2.9E-09 86.2 14.4 49 376-425 225-274 (453)
115 PF13738 Pyr_redox_3: Pyridine 97.9 2.5E-05 5.5E-10 81.5 6.9 61 368-436 87-147 (203)
116 COG2509 Uncharacterized FAD-de 97.8 9.5E-05 2.1E-09 88.1 11.9 227 148-433 4-236 (486)
117 TIGR01372 soxA sarcosine oxida 97.8 0.00033 7.1E-09 91.5 17.1 61 375-438 362-422 (985)
118 PLN02612 phytoene desaturase 97.8 0.00016 3.5E-09 89.0 13.2 38 159-197 90-127 (567)
119 PRK08244 hypothetical protein; 97.8 0.00022 4.7E-09 85.7 13.7 35 162-197 2-36 (493)
120 KOG4254|consensus 97.8 0.00011 2.4E-09 87.4 10.7 54 369-429 270-323 (561)
121 PLN02172 flavin-containing mon 97.8 0.00021 4.5E-09 86.2 13.3 37 160-197 8-44 (461)
122 PRK11445 putative oxidoreducta 97.8 0.00028 6E-09 81.3 13.7 34 162-197 1-34 (351)
123 TIGR02732 zeta_caro_desat caro 97.8 0.00012 2.5E-09 88.3 11.0 57 375-433 230-290 (474)
124 TIGR03143 AhpF_homolog putativ 97.8 0.00018 4E-09 88.2 12.8 35 161-196 3-37 (555)
125 PF01134 GIDA: Glucose inhibit 97.7 2.5E-05 5.5E-10 92.3 4.9 47 375-428 107-153 (392)
126 PLN02487 zeta-carotene desatur 97.7 0.00012 2.7E-09 90.3 10.5 56 375-432 306-365 (569)
127 TIGR00136 gidA glucose-inhibit 97.7 0.0002 4.4E-09 88.8 11.8 33 163-196 1-33 (617)
128 KOG0042|consensus 97.7 1.2E-05 2.6E-10 96.7 1.2 80 346-430 210-290 (680)
129 COG0654 UbiH 2-polyprenyl-6-me 97.6 0.00028 6.1E-09 82.3 11.5 33 162-195 2-34 (387)
130 PF04820 Trp_halogenase: Trypt 97.6 4.8E-05 1E-09 91.3 5.1 55 363-424 154-208 (454)
131 PRK10262 thioredoxin reductase 97.5 0.00051 1.1E-08 77.8 11.2 60 375-437 196-257 (321)
132 COG3380 Predicted NAD/FAD-depe 97.5 0.00048 1E-08 78.2 10.5 65 376-446 115-179 (331)
133 PLN00093 geranylgeranyl diphos 97.5 0.00012 2.6E-09 87.8 5.7 38 158-196 35-72 (450)
134 KOG2415|consensus 97.5 0.0011 2.4E-08 78.5 12.9 83 365-449 185-280 (621)
135 PRK07538 hypothetical protein; 97.4 0.00074 1.6E-08 79.2 11.5 32 164-196 2-33 (413)
136 PRK12810 gltD glutamate syntha 97.4 0.0013 2.9E-08 79.0 13.8 61 375-437 340-411 (471)
137 COG3634 AhpF Alkyl hydroperoxi 97.4 0.00019 4.2E-09 83.1 6.1 71 375-453 401-472 (520)
138 TIGR01438 TGR thioredoxin and 97.4 0.0005 1.1E-08 83.2 9.8 33 162-195 2-34 (484)
139 PF05834 Lycopene_cycl: Lycope 97.4 0.00015 3.2E-09 84.6 4.9 35 164-198 1-36 (374)
140 TIGR01316 gltA glutamate synth 97.4 0.0033 7.2E-08 75.4 16.2 37 160-197 131-167 (449)
141 PF01494 FAD_binding_3: FAD bi 97.4 0.00018 3.9E-09 79.7 5.2 36 162-198 1-36 (356)
142 TIGR02032 GG-red-SF geranylger 97.4 0.00017 3.6E-09 78.6 4.7 34 163-197 1-34 (295)
143 TIGR03377 glycerol3P_GlpA glyc 97.3 0.0011 2.5E-08 80.4 11.8 60 375-437 139-199 (516)
144 TIGR02023 BchP-ChlP geranylger 97.3 0.00021 4.5E-09 83.2 4.8 32 163-195 1-32 (388)
145 KOG2665|consensus 97.3 0.0013 2.8E-08 75.8 10.8 40 158-197 44-84 (453)
146 PF01946 Thi4: Thi4 family; PD 97.3 0.00019 4.2E-09 79.2 3.9 37 159-196 14-50 (230)
147 COG1232 HemY Protoporphyrinoge 97.3 0.00066 1.4E-08 81.8 8.4 33 165-197 3-36 (444)
148 PRK09564 coenzyme A disulfide 97.3 0.003 6.5E-08 74.7 13.7 55 375-437 202-256 (444)
149 PRK08020 ubiF 2-octaprenyl-3-m 97.2 0.0003 6.5E-09 81.2 5.1 36 160-196 3-38 (391)
150 TIGR01789 lycopene_cycl lycope 97.2 0.00031 6.6E-09 82.2 5.0 33 164-196 1-34 (370)
151 COG0445 GidA Flavin-dependent 97.2 0.00057 1.2E-08 83.2 7.0 36 161-197 3-38 (621)
152 PRK08010 pyridine nucleotide-d 97.2 0.00033 7.1E-09 83.0 4.7 36 161-197 2-37 (441)
153 COG0492 TrxB Thioredoxin reduc 97.2 0.0014 3.1E-08 75.5 9.4 59 375-437 190-248 (305)
154 PRK07608 ubiquinone biosynthes 97.2 0.00042 9E-09 79.7 5.1 35 162-197 5-39 (388)
155 PRK05249 soluble pyridine nucl 97.1 0.00042 9.1E-09 82.4 5.0 36 160-196 3-38 (461)
156 PTZ00318 NADH dehydrogenase-li 97.1 0.0026 5.5E-08 75.6 11.2 38 159-197 7-44 (424)
157 PRK07494 2-octaprenyl-6-methox 97.1 0.0005 1.1E-08 79.4 5.1 36 160-196 5-40 (388)
158 COG0562 Glf UDP-galactopyranos 97.1 0.00038 8.1E-09 80.4 3.9 35 162-197 1-35 (374)
159 PRK12775 putative trifunctiona 97.1 0.0066 1.4E-07 79.9 15.6 58 375-433 620-692 (1006)
160 TIGR01421 gluta_reduc_1 glutat 97.1 0.00042 9.1E-09 82.9 4.3 34 161-195 1-34 (450)
161 PLN02463 lycopene beta cyclase 97.1 0.00054 1.2E-08 82.5 5.2 37 159-196 25-61 (447)
162 PRK06567 putative bifunctional 97.1 0.0019 4.2E-08 83.7 10.2 35 161-196 382-416 (1028)
163 PRK07251 pyridine nucleotide-d 97.0 0.00054 1.2E-08 81.2 4.7 35 161-196 2-36 (438)
164 PRK09126 hypothetical protein; 97.0 0.00053 1.1E-08 79.1 4.4 35 162-197 3-37 (392)
165 PRK08773 2-octaprenyl-3-methyl 97.0 0.00068 1.5E-08 78.6 5.2 37 160-197 4-40 (392)
166 PRK09754 phenylpropionate diox 97.0 0.0063 1.4E-07 71.4 13.1 55 375-437 197-251 (396)
167 PRK06116 glutathione reductase 97.0 0.00062 1.3E-08 80.9 4.7 34 161-195 3-36 (450)
168 TIGR02028 ChlP geranylgeranyl 97.0 0.00064 1.4E-08 80.0 4.7 32 163-195 1-32 (398)
169 PRK12769 putative oxidoreducta 97.0 0.0049 1.1E-07 77.3 12.6 36 161-197 326-361 (654)
170 KOG3851|consensus 97.0 0.0065 1.4E-07 70.4 12.3 243 158-437 35-305 (446)
171 PRK06370 mercuric reductase; V 97.0 0.00071 1.5E-08 80.8 5.0 36 160-196 3-38 (463)
172 PTZ00058 glutathione reductase 97.0 0.00078 1.7E-08 83.3 5.5 36 159-195 45-80 (561)
173 PRK06996 hypothetical protein; 97.0 0.00073 1.6E-08 79.0 4.9 40 157-196 6-48 (398)
174 PRK06416 dihydrolipoamide dehy 97.0 0.00067 1.5E-08 80.8 4.7 36 160-196 2-37 (462)
175 PRK08013 oxidoreductase; Provi 97.0 0.00077 1.7E-08 78.8 5.0 35 162-197 3-37 (400)
176 PRK07045 putative monooxygenas 97.0 0.00078 1.7E-08 78.0 4.9 38 160-198 3-40 (388)
177 PLN02529 lysine-specific histo 97.0 0.0052 1.1E-07 78.3 12.5 37 160-197 158-194 (738)
178 PF13450 NAD_binding_8: NAD(P) 96.9 0.00089 1.9E-08 61.0 4.2 31 167-198 1-31 (68)
179 PRK05675 sdhA succinate dehydr 96.9 0.008 1.7E-07 74.5 13.7 53 375-428 137-190 (570)
180 TIGR00031 UDP-GALP_mutase UDP- 96.9 0.00075 1.6E-08 79.8 4.6 35 162-197 1-35 (377)
181 TIGR01424 gluta_reduc_2 glutat 96.9 0.00071 1.5E-08 80.6 4.4 33 162-195 2-34 (446)
182 TIGR01790 carotene-cycl lycope 96.9 0.00077 1.7E-08 77.8 4.4 33 164-197 1-33 (388)
183 PRK05976 dihydrolipoamide dehy 96.9 0.00083 1.8E-08 80.5 4.8 34 161-195 3-36 (472)
184 PRK07333 2-octaprenyl-6-methox 96.9 0.00086 1.9E-08 77.6 4.7 36 162-197 1-37 (403)
185 PRK05714 2-octaprenyl-3-methyl 96.9 0.00084 1.8E-08 78.2 4.5 34 162-196 2-35 (405)
186 PF00743 FMO-like: Flavin-bind 96.9 0.0028 6.2E-08 78.0 9.1 33 164-197 3-35 (531)
187 KOG2820|consensus 96.9 0.0077 1.7E-07 70.3 11.9 38 159-197 4-41 (399)
188 PRK14694 putative mercuric red 96.9 0.00094 2E-08 80.1 4.8 37 159-196 3-39 (468)
189 PRK04965 NADH:flavorubredoxin 96.9 0.0094 2E-07 69.4 12.8 57 375-438 194-250 (377)
190 PRK08132 FAD-dependent oxidore 96.9 0.0015 3.3E-08 79.7 6.5 52 144-196 3-56 (547)
191 PRK06115 dihydrolipoamide dehy 96.9 0.001 2.2E-08 79.9 4.9 32 162-194 3-34 (466)
192 COG1635 THI4 Ribulose 1,5-bisp 96.8 0.00089 1.9E-08 74.3 3.9 36 159-195 27-62 (262)
193 TIGR01988 Ubi-OHases Ubiquinon 96.8 0.0011 2.4E-08 75.7 4.6 34 164-198 1-34 (385)
194 KOG1399|consensus 96.8 0.0038 8.1E-08 75.6 9.1 69 367-438 94-164 (448)
195 PLN02697 lycopene epsilon cycl 96.8 0.0014 3E-08 80.7 5.5 36 159-195 105-140 (529)
196 PRK06467 dihydrolipoamide dehy 96.8 0.0012 2.5E-08 79.6 4.7 35 161-196 3-37 (471)
197 PRK06292 dihydrolipoamide dehy 96.8 0.0013 2.7E-08 78.4 4.6 34 161-195 2-35 (460)
198 TIGR01984 UbiH 2-polyprenyl-6- 96.8 0.0014 2.9E-08 75.4 4.7 34 164-198 1-35 (382)
199 TIGR02053 MerA mercuric reduct 96.7 0.0013 2.7E-08 78.6 4.5 33 163-196 1-33 (463)
200 COG3075 GlpB Anaerobic glycero 96.7 0.0061 1.3E-07 71.0 9.6 51 375-429 269-319 (421)
201 COG1252 Ndh NADH dehydrogenase 96.7 0.016 3.6E-07 69.4 13.6 52 375-436 220-271 (405)
202 PRK08849 2-octaprenyl-3-methyl 96.7 0.0013 2.9E-08 76.4 4.5 34 162-196 3-36 (384)
203 KOG0685|consensus 96.7 0.0046 1E-07 74.6 8.9 37 162-198 21-57 (498)
204 TIGR01989 COQ6 Ubiquinone bios 96.7 0.0015 3.2E-08 77.6 4.8 35 163-197 1-38 (437)
205 PRK13748 putative mercuric red 96.7 0.0014 3.1E-08 79.9 4.7 34 161-195 97-130 (561)
206 PRK07190 hypothetical protein; 96.7 0.0017 3.7E-08 78.8 5.1 38 160-198 3-40 (487)
207 PRK07818 dihydrolipoamide dehy 96.7 0.0017 3.6E-08 77.8 4.8 34 161-195 3-36 (466)
208 PTZ00367 squalene epoxidase; P 96.6 0.0017 3.6E-08 80.5 4.7 36 160-196 31-66 (567)
209 TIGR03169 Nterm_to_SelD pyridi 96.6 0.0075 1.6E-07 69.5 9.6 35 164-198 1-37 (364)
210 PRK12809 putative oxidoreducta 96.6 0.012 2.5E-07 73.9 11.6 37 161-198 309-345 (639)
211 PRK09897 hypothetical protein; 96.6 0.017 3.6E-07 71.5 12.6 35 163-197 2-37 (534)
212 PRK08850 2-octaprenyl-6-methox 96.6 0.0025 5.4E-08 74.6 5.2 33 162-195 4-36 (405)
213 PRK05732 2-octaprenyl-6-methox 96.6 0.0021 4.5E-08 74.2 4.5 35 161-195 2-38 (395)
214 KOG2311|consensus 96.5 0.0043 9.4E-08 74.7 6.9 52 375-431 136-190 (679)
215 PRK06327 dihydrolipoamide dehy 96.5 0.0026 5.5E-08 76.6 5.1 33 161-194 3-35 (475)
216 PRK06617 2-octaprenyl-6-methox 96.5 0.0022 4.7E-08 74.5 4.4 34 162-196 1-34 (374)
217 PLN02507 glutathione reductase 96.5 0.0025 5.3E-08 77.6 4.8 34 160-194 23-56 (499)
218 PRK06184 hypothetical protein; 96.5 0.0029 6.3E-08 76.4 5.1 36 161-197 2-37 (502)
219 PRK06847 hypothetical protein; 96.5 0.0031 6.6E-08 72.4 5.1 36 161-197 3-38 (375)
220 PLN02546 glutathione reductase 96.5 0.0029 6.3E-08 78.3 5.2 34 160-194 77-110 (558)
221 KOG2852|consensus 96.5 0.0014 3E-08 75.0 2.2 63 370-437 155-217 (380)
222 PRK07588 hypothetical protein; 96.4 0.003 6.5E-08 73.3 4.6 32 164-196 2-33 (391)
223 PF13434 K_oxygenase: L-lysine 96.4 0.007 1.5E-07 70.7 7.6 37 161-197 1-37 (341)
224 KOG2853|consensus 96.4 0.022 4.7E-07 66.7 11.2 37 161-197 85-124 (509)
225 COG1249 Lpd Pyruvate/2-oxoglut 96.4 0.003 6.4E-08 76.6 4.6 36 160-196 2-37 (454)
226 TIGR01423 trypano_reduc trypan 96.4 0.0034 7.4E-08 76.3 5.1 35 161-195 2-36 (486)
227 PRK08243 4-hydroxybenzoate 3-m 96.4 0.003 6.4E-08 73.7 4.4 35 162-197 2-36 (392)
228 PRK06753 hypothetical protein; 96.4 0.0032 6.9E-08 72.3 4.5 33 164-197 2-34 (373)
229 PRK06834 hypothetical protein; 96.4 0.0032 7E-08 76.4 4.7 36 161-197 2-37 (488)
230 PTZ00052 thioredoxin reductase 96.3 0.0031 6.7E-08 76.7 4.4 33 162-195 5-37 (499)
231 KOG0029|consensus 96.3 0.0044 9.5E-08 75.9 5.2 39 158-197 11-49 (501)
232 PRK08294 phenol 2-monooxygenas 96.2 0.0068 1.5E-07 76.1 6.7 39 160-198 30-68 (634)
233 PLN02576 protoporphyrinogen ox 96.2 0.0041 8.9E-08 74.6 4.7 37 161-197 11-47 (496)
234 PF00996 GDI: GDP dissociation 96.2 0.0032 6.9E-08 76.0 3.7 38 160-198 2-39 (438)
235 PRK07236 hypothetical protein; 96.2 0.0048 1E-07 71.8 5.0 36 160-196 4-39 (386)
236 PRK14989 nitrite reductase sub 96.2 0.026 5.5E-07 73.3 11.8 58 375-437 198-255 (847)
237 PRK11883 protoporphyrinogen ox 96.2 0.0042 9E-08 72.8 4.3 34 164-197 2-36 (451)
238 TIGR00562 proto_IX_ox protopor 96.2 0.005 1.1E-07 72.9 4.8 35 163-197 3-40 (462)
239 PTZ00153 lipoamide dehydrogena 96.1 0.0047 1E-07 78.0 4.5 34 161-195 115-148 (659)
240 TIGR02360 pbenz_hydroxyl 4-hyd 96.1 0.005 1.1E-07 72.2 4.4 35 162-197 2-36 (390)
241 PRK14727 putative mercuric red 96.1 0.0056 1.2E-07 73.9 4.9 36 160-196 14-49 (479)
242 PRK08163 salicylate hydroxylas 96.0 0.0069 1.5E-07 70.1 5.0 34 162-196 4-37 (396)
243 PLN02268 probable polyamine ox 96.0 0.0061 1.3E-07 72.0 4.6 34 164-198 2-35 (435)
244 PF07992 Pyr_redox_2: Pyridine 96.0 0.0066 1.4E-07 63.1 4.4 31 164-195 1-31 (201)
245 KOG3855|consensus 95.9 0.0098 2.1E-07 70.9 5.6 39 159-197 33-74 (481)
246 PF06100 Strep_67kDa_ant: Stre 95.8 0.12 2.7E-06 63.3 14.2 65 362-427 203-274 (500)
247 TIGR02374 nitri_red_nirB nitri 95.7 0.052 1.1E-06 69.9 11.0 56 375-437 193-248 (785)
248 COG2907 Predicted NAD/FAD-bind 95.6 0.18 3.8E-06 59.8 13.9 36 161-198 7-42 (447)
249 PRK05868 hypothetical protein; 95.6 0.012 2.6E-07 68.7 4.6 34 163-197 2-35 (372)
250 PRK07846 mycothione reductase; 95.5 0.012 2.7E-07 70.7 4.3 32 162-196 1-32 (451)
251 TIGR03197 MnmC_Cterm tRNA U-34 95.4 0.092 2E-06 61.2 11.1 47 375-430 146-192 (381)
252 TIGR03452 mycothione_red mycot 95.4 0.013 2.9E-07 70.3 4.4 31 162-195 2-32 (452)
253 PRK12416 protoporphyrinogen ox 95.4 0.013 2.8E-07 69.9 3.9 34 164-197 3-41 (463)
254 PLN02676 polyamine oxidase 95.4 0.016 3.4E-07 70.7 4.7 38 160-198 24-62 (487)
255 PLN02568 polyamine oxidase 95.4 0.018 3.8E-07 71.3 5.1 38 161-198 4-45 (539)
256 PRK05335 tRNA (uracil-5-)-meth 95.3 0.016 3.5E-07 70.0 4.5 34 163-197 3-36 (436)
257 TIGR03315 Se_ygfK putative sel 95.3 0.022 4.7E-07 75.0 5.8 37 160-197 535-571 (1012)
258 KOG2844|consensus 95.2 0.077 1.7E-06 66.5 9.6 46 375-427 198-243 (856)
259 PRK06912 acoL dihydrolipoamide 95.1 0.02 4.4E-07 68.7 4.4 32 164-196 2-33 (458)
260 TIGR01816 sdhA_forward succina 95.1 0.11 2.3E-06 64.7 10.7 52 375-428 130-182 (565)
261 KOG2960|consensus 95.0 0.005 1.1E-07 68.0 -0.8 36 160-195 74-110 (328)
262 PLN02927 antheraxanthin epoxid 94.9 0.029 6.3E-07 71.1 5.2 37 159-196 78-114 (668)
263 TIGR02352 thiamin_ThiO glycine 94.9 0.062 1.3E-06 60.4 7.2 49 375-431 148-196 (337)
264 COG2072 TrkA Predicted flavopr 94.9 0.03 6.6E-07 67.6 5.1 39 158-197 4-43 (443)
265 KOG0405|consensus 94.8 0.036 7.7E-07 65.2 5.2 37 159-196 17-53 (478)
266 TIGR03219 salicylate_mono sali 94.8 0.032 6.9E-07 65.7 4.8 34 164-197 2-35 (414)
267 PRK06475 salicylate hydroxylas 94.7 0.031 6.8E-07 65.5 4.7 32 164-196 4-35 (400)
268 COG1231 Monoamine oxidase [Ami 94.7 0.034 7.4E-07 67.2 5.0 37 160-197 5-41 (450)
269 PRK12831 putative oxidoreducta 94.7 0.039 8.5E-07 66.8 5.5 37 160-197 138-174 (464)
270 TIGR00137 gid_trmFO tRNA:m(5)U 94.5 0.033 7.1E-07 67.5 4.3 33 164-197 2-34 (433)
271 PRK11749 dihydropyrimidine deh 94.1 0.056 1.2E-06 65.0 5.1 37 160-197 138-174 (457)
272 PRK07845 flavoprotein disulfid 93.8 0.058 1.3E-06 65.2 4.5 32 164-196 3-34 (466)
273 PRK12778 putative bifunctional 93.7 0.071 1.5E-06 68.3 5.1 35 161-196 430-464 (752)
274 PF00070 Pyr_redox: Pyridine n 93.6 0.1 2.3E-06 48.1 4.7 34 165-199 2-35 (80)
275 PLN02852 ferredoxin-NADP+ redu 93.5 0.098 2.1E-06 64.4 5.7 38 161-198 25-63 (491)
276 PRK08255 salicylyl-CoA 5-hydro 93.3 0.077 1.7E-06 68.2 4.5 34 164-197 2-36 (765)
277 PRK12814 putative NADPH-depend 93.1 0.11 2.4E-06 65.7 5.4 36 161-197 192-227 (652)
278 PRK09853 putative selenate red 93.0 0.098 2.1E-06 69.0 4.9 36 161-197 538-573 (1019)
279 PRK12770 putative glutamate sy 92.9 0.13 2.7E-06 59.8 5.2 36 162-198 18-53 (352)
280 PRK12779 putative bifunctional 92.8 0.11 2.5E-06 68.3 5.0 36 161-197 305-340 (944)
281 PLN02328 lysine-specific histo 92.6 0.12 2.6E-06 66.9 4.9 36 161-197 237-272 (808)
282 PLN03000 amine oxidase 92.6 0.089 1.9E-06 68.4 3.7 37 161-198 183-219 (881)
283 COG3349 Uncharacterized conser 92.5 0.11 2.4E-06 63.6 4.1 32 165-197 3-34 (485)
284 COG3486 IucD Lysine/ornithine 92.2 1.8 4E-05 52.4 13.5 40 159-198 2-41 (436)
285 TIGR01317 GOGAT_sm_gam glutama 92.2 0.2 4.3E-06 61.3 5.8 36 161-197 142-177 (485)
286 KOG2614|consensus 91.9 0.19 4.1E-06 60.5 4.9 34 162-196 2-35 (420)
287 COG0446 HcaD Uncharacterized N 91.8 1.5 3.3E-05 50.4 11.9 60 375-438 189-248 (415)
288 PRK13512 coenzyme A disulfide 91.7 0.17 3.7E-06 60.7 4.4 35 164-198 3-38 (438)
289 KOG4716|consensus 91.7 0.21 4.5E-06 58.9 4.8 38 159-197 16-53 (503)
290 PLN02976 amine oxidase 91.6 0.17 3.8E-06 68.4 4.7 36 161-197 692-727 (1713)
291 PTZ00188 adrenodoxin reductase 91.2 0.21 4.6E-06 61.6 4.6 37 162-198 39-75 (506)
292 PF13454 NAD_binding_9: FAD-NA 91.2 0.29 6.4E-06 50.8 5.0 31 166-196 1-35 (156)
293 TIGR01318 gltD_gamma_fam gluta 91.0 0.34 7.3E-06 59.0 6.0 36 161-197 140-175 (467)
294 PRK13984 putative oxidoreducta 90.2 0.33 7.3E-06 60.6 5.2 38 160-198 281-318 (604)
295 PF13738 Pyr_redox_3: Pyridine 89.4 1.9 4E-05 45.4 9.1 33 163-196 168-200 (203)
296 KOG2403|consensus 89.2 0.39 8.4E-06 59.6 4.4 33 160-193 53-85 (642)
297 KOG1335|consensus 88.0 0.73 1.6E-05 55.4 5.4 65 375-450 263-328 (506)
298 PRK12771 putative glutamate sy 87.8 0.53 1.2E-05 58.4 4.5 35 162-197 137-171 (564)
299 COG1252 Ndh NADH dehydrogenase 87.1 0.43 9.3E-06 57.7 3.0 96 95-197 95-202 (405)
300 COG1148 HdrA Heterodisulfide r 86.9 0.66 1.4E-05 57.0 4.4 35 162-197 124-158 (622)
301 COG0569 TrkA K+ transport syst 86.8 0.66 1.4E-05 51.6 4.1 34 164-198 2-35 (225)
302 PF00743 FMO-like: Flavin-bind 86.5 2.1 4.6E-05 53.4 8.6 135 24-196 72-216 (531)
303 KOG1276|consensus 84.6 1.1 2.3E-05 54.6 4.6 37 162-198 11-48 (491)
304 PF02558 ApbA: Ketopantoate re 83.8 1 2.3E-05 45.7 3.6 31 165-196 1-31 (151)
305 COG5044 MRS6 RAB proteins gera 82.4 1.4 3E-05 52.8 4.3 36 161-197 5-40 (434)
306 COG0446 HcaD Uncharacterized N 82.3 1.4 3.1E-05 50.5 4.4 36 162-198 136-171 (415)
307 TIGR03140 AhpF alkyl hydropero 82.2 1.9 4.2E-05 53.1 5.6 33 164-197 354-386 (515)
308 TIGR01292 TRX_reduct thioredox 81.3 5.3 0.00012 44.2 8.2 34 163-197 142-175 (300)
309 KOG1439|consensus 80.4 1.1 2.4E-05 54.1 2.5 37 160-197 2-38 (440)
310 KOG2755|consensus 80.4 1.3 2.7E-05 51.3 2.9 32 165-196 2-34 (334)
311 PRK15317 alkyl hydroperoxide r 79.9 3.3 7.2E-05 51.1 6.6 34 164-198 353-386 (517)
312 COG0493 GltD NADPH-dependent g 79.1 2.3 5E-05 52.3 4.8 35 163-198 124-158 (457)
313 PRK09564 coenzyme A disulfide 78.2 2.4 5.2E-05 50.6 4.5 34 163-197 150-183 (444)
314 PLN02172 flavin-containing mon 77.2 30 0.00064 42.8 13.4 33 164-197 206-238 (461)
315 PRK05708 2-dehydropantoate 2-r 76.4 2.6 5.7E-05 48.7 4.0 32 164-196 4-35 (305)
316 PRK09754 phenylpropionate diox 76.4 2.9 6.4E-05 49.5 4.5 33 164-197 146-178 (396)
317 PRK06249 2-dehydropantoate 2-r 76.4 3.4 7.4E-05 47.7 4.9 32 164-196 7-38 (313)
318 COG2072 TrkA Predicted flavopr 75.8 5.5 0.00012 48.6 6.7 68 124-197 136-209 (443)
319 PRK07846 mycothione reductase; 75.3 5.6 0.00012 48.4 6.6 34 163-197 167-200 (451)
320 PRK05976 dihydrolipoamide dehy 75.3 3.1 6.8E-05 50.5 4.5 33 164-197 182-214 (472)
321 TIGR03862 flavo_PP4765 unchara 75.3 6.4 0.00014 47.5 6.9 87 325-431 59-145 (376)
322 PRK04965 NADH:flavorubredoxin 74.9 3.4 7.4E-05 48.5 4.5 33 164-197 143-175 (377)
323 PF02254 TrkA_N: TrkA-N domain 74.9 4 8.6E-05 39.7 4.3 32 165-197 1-32 (116)
324 TIGR01350 lipoamide_DH dihydro 74.7 3.2 7E-05 49.9 4.4 33 163-196 171-203 (461)
325 COG4529 Uncharacterized protei 74.3 3 6.5E-05 51.5 3.9 36 162-197 1-38 (474)
326 KOG1336|consensus 74.1 7.5 0.00016 48.1 7.1 74 375-463 266-339 (478)
327 PRK07251 pyridine nucleotide-d 74.1 3.6 7.7E-05 49.4 4.5 33 164-197 159-191 (438)
328 PF01210 NAD_Gly3P_dh_N: NAD-d 72.8 3.6 7.7E-05 43.1 3.6 31 165-196 2-32 (157)
329 PRK06912 acoL dihydrolipoamide 72.8 4 8.7E-05 49.5 4.5 32 164-196 172-203 (458)
330 KOG4405|consensus 72.6 4.2 9.1E-05 49.5 4.4 39 159-198 5-43 (547)
331 KOG1800|consensus 71.1 4.1 9E-05 49.3 4.0 39 160-198 18-57 (468)
332 TIGR02053 MerA mercuric reduct 70.6 4.6 0.0001 48.8 4.4 33 163-196 167-199 (463)
333 PRK06467 dihydrolipoamide dehy 70.4 4.6 0.0001 49.3 4.4 33 164-197 176-208 (471)
334 PRK14989 nitrite reductase sub 70.2 2.7 5.9E-05 55.3 2.5 33 164-197 147-179 (847)
335 PRK06522 2-dehydropantoate 2-r 69.9 5.1 0.00011 45.2 4.2 29 165-194 3-31 (304)
336 PRK12921 2-dehydropantoate 2-r 69.8 4.8 0.0001 45.6 4.0 29 165-194 3-31 (305)
337 TIGR03385 CoA_CoA_reduc CoA-di 69.5 5.1 0.00011 47.8 4.4 32 164-196 139-170 (427)
338 TIGR03143 AhpF_homolog putativ 68.5 11 0.00024 47.2 7.1 33 164-197 145-177 (555)
339 COG1206 Gid NAD(FAD)-utilizing 68.1 4.4 9.6E-05 48.3 3.3 33 164-197 5-37 (439)
340 TIGR01421 gluta_reduc_1 glutat 68.1 5.6 0.00012 48.3 4.4 33 164-197 168-200 (450)
341 PTZ00318 NADH dehydrogenase-li 67.9 5.4 0.00012 47.9 4.2 34 164-197 175-221 (424)
342 PRK06416 dihydrolipoamide dehy 67.3 6.2 0.00013 47.7 4.5 32 164-196 174-205 (462)
343 PRK13512 coenzyme A disulfide 67.3 5.9 0.00013 47.8 4.3 33 164-197 150-182 (438)
344 PRK14727 putative mercuric red 67.2 8.8 0.00019 47.0 5.8 31 164-195 190-220 (479)
345 KOG0399|consensus 67.2 7.1 0.00015 52.3 5.1 35 163-198 1786-1820(2142)
346 PRK07818 dihydrolipoamide dehy 66.8 6.3 0.00014 47.8 4.5 32 164-196 174-205 (466)
347 PRK10262 thioredoxin reductase 66.7 12 0.00026 42.9 6.5 33 164-197 148-180 (321)
348 PRK06370 mercuric reductase; V 66.4 6.6 0.00014 47.6 4.5 32 164-196 173-204 (463)
349 PRK10669 putative cation:proto 66.4 6.9 0.00015 48.9 4.8 35 162-197 417-451 (558)
350 PRK05249 soluble pyridine nucl 65.7 7 0.00015 47.2 4.5 33 163-196 176-208 (461)
351 KOG2495|consensus 65.5 3.3 7.2E-05 50.6 1.8 35 163-197 219-266 (491)
352 PRK06115 dihydrolipoamide dehy 65.3 7.2 0.00016 47.6 4.6 32 164-196 176-207 (466)
353 TIGR02374 nitri_red_nirB nitri 64.7 5.4 0.00012 52.0 3.6 33 164-197 142-174 (785)
354 PRK06292 dihydrolipoamide dehy 64.6 7.4 0.00016 46.9 4.4 33 164-197 171-203 (460)
355 KOG3923|consensus 64.2 30 0.00065 41.1 8.9 39 161-199 2-46 (342)
356 KOG1399|consensus 63.7 23 0.0005 43.8 8.4 48 22-69 75-130 (448)
357 PLN02565 cysteine synthase 62.9 5.6 0.00012 46.7 2.9 34 162-195 172-208 (322)
358 PF02737 3HCDH_N: 3-hydroxyacy 62.8 8.6 0.00019 41.5 4.1 32 165-197 2-33 (180)
359 TIGR01424 gluta_reduc_2 glutat 62.6 8.6 0.00019 46.5 4.5 33 164-197 168-200 (446)
360 PRK14620 NAD(P)H-dependent gly 62.5 8.3 0.00018 44.6 4.2 30 165-195 3-32 (326)
361 COG4529 Uncharacterized protei 62.1 34 0.00073 42.7 9.3 169 6-196 25-231 (474)
362 PLN02256 arogenate dehydrogena 61.7 7.7 0.00017 45.4 3.7 50 144-194 18-67 (304)
363 PRK06116 glutathione reductase 61.2 9.5 0.00021 46.0 4.5 33 164-197 169-201 (450)
364 PRK06719 precorrin-2 dehydroge 60.8 10 0.00022 40.3 4.1 28 164-192 15-42 (157)
365 TIGR03452 mycothione_red mycot 60.1 9.9 0.00021 46.3 4.4 33 164-197 171-203 (452)
366 PRK07845 flavoprotein disulfid 59.5 11 0.00023 46.1 4.6 33 164-197 179-211 (466)
367 PRK06327 dihydrolipoamide dehy 59.0 11 0.00023 46.1 4.5 32 164-196 185-216 (475)
368 PRK08010 pyridine nucleotide-d 58.4 12 0.00025 45.2 4.6 33 164-197 160-192 (441)
369 PRK06718 precorrin-2 dehydroge 58.1 11 0.00025 41.4 4.1 30 163-193 11-40 (202)
370 PRK08229 2-dehydropantoate 2-r 58.1 10 0.00022 43.9 3.9 31 164-195 4-34 (341)
371 PTZ00153 lipoamide dehydrogena 57.8 11 0.00024 48.5 4.5 33 164-197 314-346 (659)
372 PLN02507 glutathione reductase 57.3 12 0.00025 46.5 4.4 33 164-197 205-237 (499)
373 PRK06129 3-hydroxyacyl-CoA deh 57.1 11 0.00023 43.7 3.9 32 164-196 4-35 (308)
374 PRK08293 3-hydroxybutyryl-CoA 56.6 12 0.00027 42.7 4.2 32 164-196 5-36 (287)
375 PTZ00052 thioredoxin reductase 56.6 16 0.00034 45.3 5.4 31 164-195 184-214 (499)
376 PRK13748 putative mercuric red 56.6 12 0.00026 46.4 4.4 31 164-195 272-302 (561)
377 PRK00094 gpsA NAD(P)H-dependen 55.9 12 0.00026 42.7 4.0 32 164-196 3-34 (325)
378 PRK14106 murD UDP-N-acetylmura 55.9 13 0.00028 44.8 4.4 32 164-196 7-38 (450)
379 PRK14694 putative mercuric red 55.0 18 0.00039 44.1 5.4 31 164-195 180-210 (468)
380 PLN02546 glutathione reductase 54.4 14 0.0003 46.7 4.5 33 164-197 254-286 (558)
381 PRK01438 murD UDP-N-acetylmura 54.3 19 0.00041 44.0 5.5 32 164-196 18-49 (480)
382 TIGR01423 trypano_reduc trypan 53.6 14 0.0003 45.8 4.3 34 164-197 189-224 (486)
383 PRK07045 putative monooxygenas 53.2 25 0.00055 41.3 6.1 49 375-429 118-166 (388)
384 PRK14618 NAD(P)H-dependent gly 53.1 15 0.00033 42.7 4.2 32 164-196 6-37 (328)
385 COG4716 Myosin-crossreactive a 52.8 10 0.00022 46.0 2.8 51 375-426 238-291 (587)
386 PTZ00058 glutathione reductase 52.8 14 0.00031 46.6 4.3 33 164-197 239-271 (561)
387 PRK09260 3-hydroxybutyryl-CoA 52.6 15 0.00032 42.0 4.0 31 165-196 4-34 (288)
388 PRK09496 trkA potassium transp 51.6 16 0.00034 43.9 4.2 33 164-197 2-34 (453)
389 PRK11761 cysM cysteine synthas 51.2 11 0.00023 43.8 2.6 35 162-196 167-204 (296)
390 PF13434 K_oxygenase: L-lysine 51.0 4 8.6E-05 48.2 -0.8 39 159-197 187-226 (341)
391 COG0031 CysK Cysteine synthase 50.7 9.5 0.00021 44.9 2.1 35 162-196 169-206 (300)
392 PF01593 Amino_oxidase: Flavin 50.7 14 0.00031 41.9 3.5 46 378-430 223-268 (450)
393 KOG1336|consensus 50.1 20 0.00043 44.6 4.7 136 59-198 108-248 (478)
394 PF13807 GNVR: G-rich domain o 49.7 37 0.0008 32.3 5.5 34 754-787 38-71 (82)
395 COG1249 Lpd Pyruvate/2-oxoglut 48.6 28 0.00061 43.1 5.8 34 164-198 175-208 (454)
396 PRK05690 molybdopterin biosynt 48.4 21 0.00045 40.5 4.3 37 160-196 30-66 (245)
397 COG1748 LYS9 Saccharopine dehy 48.0 20 0.00044 43.7 4.3 34 164-197 3-36 (389)
398 PRK09496 trkA potassium transp 47.7 20 0.00044 43.0 4.3 34 163-197 232-265 (453)
399 PRK07530 3-hydroxybutyryl-CoA 47.5 21 0.00046 40.8 4.2 32 164-196 6-37 (292)
400 PRK07819 3-hydroxybutyryl-CoA 47.4 17 0.00038 41.9 3.5 33 164-197 7-39 (286)
401 KOG1252|consensus 47.3 6.5 0.00014 46.9 0.1 38 160-197 210-250 (362)
402 PRK12831 putative oxidoreducta 47.3 44 0.00095 41.2 7.1 58 375-433 329-402 (464)
403 PRK03562 glutathione-regulated 46.2 21 0.00046 45.6 4.4 35 162-197 400-434 (621)
404 PRK03659 glutathione-regulated 45.9 21 0.00045 45.5 4.2 35 162-197 400-434 (601)
405 PHA03308 transcriptional regul 45.3 11 0.00024 48.2 1.6 9 241-249 361-369 (1463)
406 PRK02705 murD UDP-N-acetylmura 45.1 23 0.0005 42.9 4.2 32 165-197 3-34 (459)
407 PRK06035 3-hydroxyacyl-CoA deh 45.0 24 0.00052 40.4 4.2 31 165-196 6-36 (291)
408 PF13241 NAD_binding_7: Putati 44.9 19 0.00041 35.4 2.9 33 162-195 7-39 (103)
409 PRK04148 hypothetical protein; 44.2 22 0.00047 37.5 3.4 32 164-197 19-50 (134)
410 COG1251 NirB NAD(P)H-nitrite r 44.0 40 0.00086 44.2 6.1 74 369-462 193-267 (793)
411 PRK06130 3-hydroxybutyryl-CoA 44.0 26 0.00056 40.4 4.2 32 164-196 6-37 (311)
412 cd01075 NAD_bind_Leu_Phe_Val_D 43.8 27 0.00058 38.4 4.1 31 164-195 30-60 (200)
413 cd01483 E1_enzyme_family Super 43.7 35 0.00075 34.9 4.7 32 165-196 2-33 (143)
414 PRK12770 putative glutamate sy 43.4 28 0.0006 40.8 4.5 32 164-196 174-206 (352)
415 COG1893 ApbA Ketopantoate redu 43.2 24 0.00051 41.5 3.8 32 165-197 3-34 (307)
416 PRK05808 3-hydroxybutyryl-CoA 43.1 25 0.00055 40.0 4.0 32 164-196 5-36 (282)
417 PRK00811 spermidine synthase; 42.9 39 0.00085 39.1 5.5 33 163-197 78-111 (283)
418 PRK14619 NAD(P)H-dependent gly 42.7 30 0.00065 40.1 4.5 31 164-195 6-36 (308)
419 COG1063 Tdh Threonine dehydrog 42.6 36 0.00079 40.3 5.3 33 164-196 171-203 (350)
420 PF00899 ThiF: ThiF family; I 42.5 33 0.00071 34.9 4.3 33 164-196 4-36 (135)
421 PF01494 FAD_binding_3: FAD bi 42.3 40 0.00086 37.9 5.3 50 376-429 123-173 (356)
422 PRK07066 3-hydroxybutyryl-CoA 42.2 28 0.00061 41.3 4.3 31 165-196 10-40 (321)
423 TIGR01316 gltA glutamate synth 42.0 29 0.00063 42.4 4.5 32 164-196 274-305 (449)
424 TIGR01318 gltD_gamma_fam gluta 41.8 43 0.00093 41.2 5.9 61 376-437 332-409 (467)
425 PRK08243 4-hydroxybenzoate 3-m 41.5 48 0.001 39.3 6.0 51 375-429 114-164 (392)
426 TIGR01470 cysG_Nterm siroheme 41.3 30 0.00066 38.3 4.1 30 164-194 11-40 (205)
427 cd05191 NAD_bind_amino_acid_DH 41.3 46 0.001 31.5 4.8 31 164-194 25-55 (86)
428 TIGR01438 TGR thioredoxin and 40.7 28 0.0006 43.1 4.1 31 164-195 182-212 (484)
429 TIGR02032 GG-red-SF geranylger 40.5 53 0.0012 36.2 5.9 46 375-426 102-147 (295)
430 PRK12475 thiamine/molybdopteri 40.4 31 0.00067 41.1 4.2 35 161-196 23-58 (338)
431 TIGR01915 npdG NADPH-dependent 39.6 32 0.0007 37.9 4.0 31 165-196 3-34 (219)
432 PF01593 Amino_oxidase: Flavin 39.2 35 0.00076 38.8 4.3 25 173-198 2-26 (450)
433 PLN02545 3-hydroxybutyryl-CoA 38.9 35 0.00075 39.2 4.2 31 165-196 7-37 (295)
434 TIGR00518 alaDH alanine dehydr 38.6 65 0.0014 38.8 6.6 34 161-195 166-199 (370)
435 PF01488 Shikimate_DH: Shikima 38.2 44 0.00095 34.4 4.4 34 162-195 12-45 (135)
436 cd05311 NAD_bind_2_malic_enz N 38.0 36 0.00078 38.3 4.1 32 164-196 27-61 (226)
437 TIGR03026 NDP-sugDHase nucleot 37.4 32 0.0007 41.5 3.8 32 165-197 3-34 (411)
438 PRK11749 dihydropyrimidine deh 36.7 40 0.00086 41.1 4.5 33 164-196 275-307 (457)
439 TIGR01984 UbiH 2-polyprenyl-6- 36.5 67 0.0015 37.4 6.2 46 375-428 117-162 (382)
440 PF03721 UDPG_MGDP_dh_N: UDP-g 36.3 40 0.00087 36.7 4.0 32 165-197 3-34 (185)
441 TIGR02028 ChlP geranylgeranyl 36.1 59 0.0013 39.0 5.7 70 364-438 94-169 (398)
442 PRK02472 murD UDP-N-acetylmura 35.7 39 0.00085 40.7 4.2 31 165-196 8-38 (447)
443 cd01080 NAD_bind_m-THF_DH_Cycl 34.9 56 0.0012 35.4 4.8 34 161-195 43-77 (168)
444 PRK07688 thiamine/molybdopteri 34.5 46 0.00099 39.7 4.4 35 161-196 23-58 (339)
445 PRK05600 thiamine biosynthesis 34.2 48 0.001 40.0 4.6 36 161-196 40-75 (370)
446 TIGR01988 Ubi-OHases Ubiquinon 33.8 79 0.0017 36.6 6.1 57 364-429 108-164 (385)
447 PRK08773 2-octaprenyl-3-methyl 33.6 78 0.0017 37.4 6.1 55 375-438 124-178 (392)
448 TIGR02279 PaaC-3OHAcCoADH 3-hy 33.2 44 0.00095 41.9 4.2 32 165-197 8-39 (503)
449 PRK14045 1-aminocyclopropane-1 33.2 52 0.0011 38.7 4.6 35 162-196 184-221 (329)
450 PRK06223 malate dehydrogenase; 32.8 49 0.0011 38.2 4.2 30 164-194 4-34 (307)
451 PF03807 F420_oxidored: NADP o 32.7 44 0.00096 31.5 3.2 31 165-196 2-36 (96)
452 cd05291 HicDH_like L-2-hydroxy 32.7 53 0.0012 38.2 4.5 33 165-197 3-36 (306)
453 PLN02823 spermine synthase 32.6 76 0.0016 38.1 5.8 33 163-197 105-138 (336)
454 PF03435 Saccharop_dh: Sacchar 32.6 45 0.00098 39.6 4.0 32 165-196 1-33 (386)
455 cd01487 E1_ThiF_like E1_ThiF_l 32.5 58 0.0013 35.1 4.4 31 165-196 2-33 (174)
456 PRK08163 salicylate hydroxylas 32.5 74 0.0016 37.4 5.7 56 364-427 111-166 (396)
457 cd05292 LDH_2 A subgroup of L- 32.4 53 0.0011 38.4 4.4 34 164-197 2-36 (308)
458 COG0644 FixC Dehydrogenases (f 31.9 68 0.0015 38.4 5.3 55 367-429 99-153 (396)
459 PRK15116 sulfur acceptor prote 31.6 54 0.0012 38.2 4.3 35 161-196 29-64 (268)
460 TIGR02354 thiF_fam2 thiamine b 31.4 56 0.0012 36.1 4.2 34 161-195 20-54 (200)
461 TIGR02356 adenyl_thiF thiazole 31.3 57 0.0012 35.9 4.2 36 161-196 20-55 (202)
462 PRK08328 hypothetical protein; 31.2 58 0.0013 36.6 4.4 35 161-195 26-60 (231)
463 PF01118 Semialdhyde_dh: Semia 31.2 68 0.0015 32.2 4.4 33 165-197 2-35 (121)
464 KOG1481|consensus 30.3 41 0.00089 39.7 3.0 37 160-196 211-249 (391)
465 TIGR02853 spore_dpaA dipicolin 30.3 55 0.0012 38.1 4.1 33 163-196 152-184 (287)
466 COG0492 TrxB Thioredoxin reduc 30.1 90 0.0019 36.9 5.8 35 164-199 145-179 (305)
467 PRK07326 short chain dehydroge 30.1 60 0.0013 34.9 4.1 31 164-195 8-39 (237)
468 PRK06475 salicylate hydroxylas 29.9 87 0.0019 37.3 5.7 50 375-429 119-168 (400)
469 COG3634 AhpF Alkyl hydroperoxi 29.8 77 0.0017 38.7 5.1 77 119-198 311-389 (520)
470 PF10727 Rossmann-like: Rossma 29.5 44 0.00096 34.8 2.8 35 159-194 7-41 (127)
471 TIGR02355 moeB molybdopterin s 29.5 67 0.0015 36.5 4.5 36 161-196 23-58 (240)
472 cd00757 ThiF_MoeB_HesA_family 29.4 63 0.0014 36.1 4.2 36 161-196 20-55 (228)
473 PRK08017 oxidoreductase; Provi 29.1 68 0.0015 34.9 4.3 31 165-196 5-36 (256)
474 TIGR03467 HpnE squalene-associ 29.0 74 0.0016 37.2 4.9 50 376-431 209-258 (419)
475 PLN02968 Probable N-acetyl-gam 29.0 80 0.0017 38.4 5.3 36 160-195 36-72 (381)
476 KOG0404|consensus 29.0 51 0.0011 38.1 3.3 33 163-196 9-41 (322)
477 cd01339 LDH-like_MDH L-lactate 28.8 60 0.0013 37.6 4.1 31 166-197 2-33 (300)
478 TIGR03376 glycerol3P_DH glycer 28.7 64 0.0014 38.7 4.3 29 165-194 2-38 (342)
479 TIGR02733 desat_CrtD C-3',4' d 28.6 1.4E+02 0.003 36.7 7.2 35 163-198 2-36 (492)
480 PRK11064 wecC UDP-N-acetyl-D-m 28.4 61 0.0013 39.6 4.2 31 165-196 6-36 (415)
481 TIGR03736 PRTRC_ThiF PRTRC sys 28.4 68 0.0015 36.9 4.3 25 160-184 9-33 (244)
482 PRK08268 3-hydroxy-acyl-CoA de 28.4 60 0.0013 40.7 4.2 32 165-197 10-41 (507)
483 PRK10537 voltage-gated potassi 28.3 59 0.0013 39.7 4.0 31 163-194 241-271 (393)
484 PRK12446 undecaprenyldiphospho 28.2 62 0.0013 38.4 4.1 28 165-193 4-36 (352)
485 PRK11730 fadB multifunctional 28.2 58 0.0013 42.6 4.2 33 164-197 315-347 (715)
486 PRK12771 putative glutamate sy 28.1 1.2E+02 0.0025 38.3 6.7 60 376-437 317-391 (564)
487 TIGR01763 MalateDH_bact malate 28.1 68 0.0015 37.6 4.3 29 165-194 4-33 (305)
488 PF01113 DapB_N: Dihydrodipico 28.0 1E+02 0.0023 31.3 5.2 34 165-198 3-38 (124)
489 cd02033 BchX Chlorophyllide re 28.0 1.5E+02 0.0033 35.5 7.2 36 163-198 32-71 (329)
490 PRK06701 short chain dehydroge 27.9 1.2E+02 0.0027 34.5 6.3 32 164-196 48-80 (290)
491 cd01065 NAD_bind_Shikimate_DH 27.6 78 0.0017 32.3 4.2 33 164-196 21-53 (155)
492 PRK07531 bifunctional 3-hydrox 27.5 64 0.0014 40.2 4.2 31 165-196 7-37 (495)
493 TIGR01381 E1_like_apg7 E1-like 27.5 64 0.0014 41.9 4.3 35 162-196 338-372 (664)
494 TIGR02437 FadB fatty oxidation 27.4 61 0.0013 42.4 4.2 33 164-197 315-347 (714)
495 COG1251 NirB NAD(P)H-nitrite r 27.3 40 0.00087 44.1 2.5 135 49-197 39-179 (793)
496 PLN02695 GDP-D-mannose-3',5'-e 27.0 99 0.0021 36.7 5.5 37 159-196 18-55 (370)
497 PLN02556 cysteine synthase/L-3 26.9 70 0.0015 38.7 4.3 35 162-196 216-253 (368)
498 PLN03013 cysteine synthase 26.8 73 0.0016 39.5 4.5 35 162-196 280-317 (429)
499 PLN02353 probable UDP-glucose 26.6 71 0.0015 39.9 4.4 34 164-197 3-37 (473)
500 TIGR01505 tartro_sem_red 2-hyd 26.5 60 0.0013 37.1 3.5 30 165-195 2-31 (291)
No 1
>KOG1238|consensus
Probab=100.00 E-value=1.9e-131 Score=1165.89 Aligned_cols=558 Identities=36% Similarity=0.549 Sum_probs=499.4
Q ss_pred cCCCCCCcccC--CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCCccccccCCcccCccccccc
Q psy11618 148 IYPPDMTPYVK--SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPS 225 (1381)
Q Consensus 148 ~~p~~~~~~~~--~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~~~~~l~~s~~DW~Y~TePq 225 (1381)
+...++.++.. ..++|||||||||||||++|+||||+|++|||+||||++++...++|......+.+.+||+|+|+||
T Consensus 41 ~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps 120 (623)
T KOG1238|consen 41 DPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPS 120 (623)
T ss_pred CcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccC
Confidence 33344444444 5678999999999999999999999999999999999999888899977778888999999999999
Q ss_pred ccccccCCCceeecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCC
Q psy11618 226 QFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQ 305 (1381)
Q Consensus 226 ~~a~~gl~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~ 305 (1381)
+++|+++++++|+|||||++||||++|+|+|+||+++|||+|++.||+||+|++++|||+|+|+...++.+. .++||+.
T Consensus 121 ~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~-~~y~~~~ 199 (623)
T KOG1238|consen 121 QHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPEL-TPYHGAG 199 (623)
T ss_pred hhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCccc-CcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998877665 5699999
Q ss_pred CCccccCCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCc
Q psy11618 306 GYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 385 (1381)
Q Consensus 306 GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA 385 (1381)
||..++..+++ ++..+++.++.+|+|.+.. |+||+. +.|++..+.++++|+|+|++++|++|+...|+|+|+..++
T Consensus 200 g~~~ve~~~~~--~~~~~~~~~ag~e~G~~~~-D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~ 275 (623)
T KOG1238|consen 200 GPLLVEAGVYP--NNLFTAFHRAGTEIGGSIF-DRNGER-HTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNA 275 (623)
T ss_pred Ccceecccccc--CchhhHhHHhHHhcCCCcc-CCCCcc-ccchhhhhccccCCEEEEehhhhhhhhhccCccccccccc
Confidence 99999998888 8999999999999996544 999999 9999999999999999999999999998349999999999
Q ss_pred EEEEEEec-CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhcccc
Q psy11618 386 KVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLN 463 (1381)
Q Consensus 386 ~VtRIlfd-~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDH 463 (1381)
.|+||.+| .+++|+||+++++.|++++++|+|||||||||||||||||+|||||++||+++|||+++|+| ||||||||
T Consensus 276 ~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH 355 (623)
T KOG1238|consen 276 AVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDH 355 (623)
T ss_pred eEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccc
Confidence 99999999 78899999999833899999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccc
Q psy11618 464 AQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSA 543 (1381)
Q Consensus 464 p~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~ 543 (1381)
+..+ +....+++++ . ...+.
T Consensus 356 ~~~~-~~~~~~~~~~--~-----------------------------------------------~~~~~---------- 375 (623)
T KOG1238|consen 356 PMNP-GFVFSTNPVE--L-----------------------------------------------SLIRL---------- 375 (623)
T ss_pred cccc-eeeecCCCcc--c-----------------------------------------------ccccc----------
Confidence 9985 3333333321 0 00000
Q ss_pred cchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCC---CCCCeeeeeeccccccchhhhhhhhccccchhHHHH
Q psy11618 544 PLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNT---ARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTA 620 (1381)
Q Consensus 544 pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~---~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~ 620 (1381)
.......+|+..++||.++.+ .+..+|.+++.+. ++||+|.++.+.+. ..+.....++..+ +++++
T Consensus 376 ------~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~-~~~~~~~~~~~~~---~~y~~ 444 (623)
T KOG1238|consen 376 ------VGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSL-SSDGLTALRKALG---EIYQA 444 (623)
T ss_pred ------ccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccc-cccchhhhhhhcc---hHHHH
Confidence 013456789999999999877 7889999887654 89999988877665 3344444554444 66777
Q ss_pred HhccCCCCCeEEEEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccC
Q psy11618 621 YVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLN 700 (1381)
Q Consensus 621 ~~~p~~~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~p 700 (1381)
.+.+..+++.+.+...+++|+|||+++|+|+||.++|.|++||++||+|+++++||+|.+.|+.+|++|++++++++.++
T Consensus 445 ~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~ 524 (623)
T KOG1238|consen 445 LFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKP 524 (623)
T ss_pred hhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhcccc
Confidence 66666666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHH
Q psy11618 701 LEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780 (1381)
Q Consensus 701 lPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMI 780 (1381)
.|+|+.....||++|+|++|+.+.|.|||+|||||||+.||++|||+|+|||||+|||||||||||.+|++|||||||||
T Consensus 525 ~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MI 604 (623)
T KOG1238|consen 525 VPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMI 604 (623)
T ss_pred CCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H
Q psy11618 781 L 781 (1381)
Q Consensus 781 A 781 (1381)
|
T Consensus 605 g 605 (623)
T KOG1238|consen 605 G 605 (623)
T ss_pred H
Confidence 8
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.9e-103 Score=930.64 Aligned_cols=515 Identities=31% Similarity=0.452 Sum_probs=416.3
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC---CccccCCcccc-ccCCcccCcccccccccccccCCCceeec
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP---IHSRIPGMSSV-LSLSEFDHAYLAEPSQFAGLGVRNARIKI 239 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~---~~~~iP~~~~~-l~~s~~DW~Y~TePq~~a~~gl~~r~i~~ 239 (1381)
||||||||+|||++|+||||+++.||+|||||++.. ...+.|..+.. ..++.+||+|+++||++ .++|++.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 999999999999999999998778999999998532 33455543322 22345899999999974 46788999
Q ss_pred ccccccCccccccceEEecCCccchHHHhh-cCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCCCC
Q psy11618 240 TAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 318 (1381)
Q Consensus 240 pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~-lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~ 318 (1381)
+|||++||||+||+|+|.|++++|||+|++ .|++||+|||++|||+|+|+...++ .++||++||+++++++..
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~----~~~~g~~G~~~v~~~~~~-- 150 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE----KPYRGHDGPIKVRRGPAD-- 150 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC----cccCCCCCCEEEecCCCC--
Confidence 999999999999999999999999999998 7999999999999999999886432 367999999999877665
Q ss_pred chHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeE
Q psy11618 319 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 398 (1381)
Q Consensus 319 ~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RA 398 (1381)
++..+.+.++++++|++..+|.|++. ..|++.++.++++|+|+|+..+|+++++ +|+|++|+++++|+||+++ ++||
T Consensus 151 ~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~l~~a~-~r~nl~i~~~~~V~rI~~~-~~ra 227 (532)
T TIGR01810 151 NPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAARAYLHPAM-KRPNLEVQTRAFVTKINFE-GNRA 227 (532)
T ss_pred CHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHHHHHhhhhc-cCCCeEEEeCCEEEEEEec-CCeE
Confidence 78899999999999999888988877 7788877777789999999999999987 7999999999999999998 7899
Q ss_pred EEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEEecCCc
Q psy11618 399 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPL 477 (1381)
Q Consensus 399 tGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l~~~v 477 (1381)
+||++.+ +|++.++.++||||+||||++||||||+|||||+++|+++|||+++|+| ||||||||+.+ .+.++.+++.
T Consensus 228 ~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~ 305 (532)
T TIGR01810 228 TGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPV 305 (532)
T ss_pred EEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCc
Confidence 9999987 5555667777999999999999999999999999999999999999999 99999999998 4778776543
Q ss_pred cccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhHHHHHH
Q psy11618 478 KRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFK 557 (1381)
Q Consensus 478 s~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~~e 557 (1381)
. .. + ..+ . ........+
T Consensus 306 ~--~~--------------~--------------------~~~------------~---------------~~~~~~~~~ 322 (532)
T TIGR01810 306 S--LY--------------P--------------------SLN------------W---------------LKQPFIGAQ 322 (532)
T ss_pred c--cc--------------c--------------------ccc------------h---------------hhhhHHHHH
Confidence 1 00 0 000 0 000111224
Q ss_pred HHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEEEEEee
Q psy11618 558 YLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSL 637 (1381)
Q Consensus 558 Yl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI~v~L 637 (1381)
|...+.|+..... .+..++.++......|++++...+.... .+ + ........+++....
T Consensus 323 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~---------~----------~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 323 WLFGRKGAGASNH-FEGGGFVRSNDDVDYPNIQYHFLPVAIR-YD---------G----------TKAPKAHGFQVHVGP 381 (532)
T ss_pred HHhcCCCCccccc-cceeEEEecCCCCCCCCeEEEEEeeeec-cC---------C----------CCCCCCCcEEEEEee
Confidence 5445555554322 2334454433222457776554331110 00 0 000011235666788
Q ss_pred cccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCchhHHH
Q psy11618 638 VNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTC 717 (1381)
Q Consensus 638 l~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~ 717 (1381)
++|+|||+|+|+|+||.+.|.||+||++||.|++.+++++|+++|++++++++++..++. .|+ .+.++||+|++
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~~~d~~~~~ 455 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI---SPG---PEVQTDEEIDE 455 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc---CCC---CCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888654433 122 34578999999
Q ss_pred HHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHHH
Q psy11618 718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFL 783 (1381)
Q Consensus 718 yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~l 783 (1381)
|+|++..|.||++||||||+++|++||||+++|||||+|||||||||||++|++|||+|+||||-=
T Consensus 456 ~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaer 521 (532)
T TIGR01810 456 FVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEK 521 (532)
T ss_pred HHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHH
Confidence 999999999999999999997778899999999999999999999999999999999999999853
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.9e-101 Score=919.15 Aligned_cols=517 Identities=32% Similarity=0.490 Sum_probs=416.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC---CCccccCCccccc-cCCcccCcccccccccccccCCCc
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSSVL-SLSEFDHAYLAEPSQFAGLGVRNA 235 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~---~~~~~iP~~~~~l-~~s~~DW~Y~TePq~~a~~gl~~r 235 (1381)
.++|||||||||+|||++|+||||++|+||+|||||++. +...++|...... .++++||+|+++||++ .+++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCC
Confidence 456999999999999999999999889999999999753 2334556533222 2346899999999874 4678
Q ss_pred eeecccccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCC-
Q psy11618 236 RIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF- 313 (1381)
Q Consensus 236 ~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~- 313 (1381)
++.++|||++||||+||+|+|.|+++.|||+|++. |++||+|||++|||+|+|+...++ .++||.+||++++++
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~----~~~~g~~gp~~~~~~~ 154 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE----DDYRGGDGPLSVTRGK 154 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC----ccccCCCCCEEEeCCC
Confidence 89999999999999999999999999999999987 899999999999999999987321 357999999999865
Q ss_pred CCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEec
Q psy11618 314 KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 393 (1381)
Q Consensus 314 p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd 393 (1381)
... ++..+.+.+|++++|++..+|.|+++ ..|++.++.++++|+|+|++++|++|+. +|+|++|+++|+|+||++|
T Consensus 155 ~~~--~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~R~s~~~~~l~~a~-~~~nl~i~~~a~V~rI~~~ 230 (560)
T PRK02106 155 PGT--NPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGRRWSAARAYLDPAL-KRPNLTIVTHALTDRILFE 230 (560)
T ss_pred CCC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCEEEChHHHhhcccc-CCCCcEEEcCCEEEEEEEe
Confidence 334 78899999999999999888998887 7888877777889999999999999987 7999999999999999998
Q ss_pred CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEE
Q psy11618 394 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMA 472 (1381)
Q Consensus 394 ~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~ 472 (1381)
++||+||++.+ +++++++.++||||+||||++||||||+|||||+++|+++|||+++|+| ||||||||+.. .+.++
T Consensus 231 -~~~a~GV~~~~-~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~ 307 (560)
T PRK02106 231 -GKRAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYE 307 (560)
T ss_pred -CCeEEEEEEEe-CCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEE
Confidence 78999999998 4455566667899999999999999999999999999999999999999 99999999998 47777
Q ss_pred ecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhH
Q psy11618 473 FSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ 552 (1381)
Q Consensus 473 l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~ 552 (1381)
.+++.. .. +. .. . + ...
T Consensus 308 ~~~~~~--~~-----------------------------~~-----~~------------~-------~--------~~~ 324 (560)
T PRK02106 308 CKQPVS--LY-----------------------------PA-----LK------------W-------W--------NKP 324 (560)
T ss_pred eCCCcc--cc-----------------------------cc-----cc------------h-------h--------hhh
Confidence 765431 00 00 00 0 0 001
Q ss_pred HHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEE
Q psy11618 553 EMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGV 632 (1381)
Q Consensus 553 ~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~t 632 (1381)
....+|..+++|+.+..+ .+..++.+.......|+++....+... + ..+ ........++
T Consensus 325 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~---------~-~~~----------~~~~~~~~~~ 383 (560)
T PRK02106 325 KIGAEWLFTGTGLGASNH-FEAGGFIRSRAGVDWPNIQYHFLPVAI---------R-YDG----------SNAVKGHGFQ 383 (560)
T ss_pred HHHHHHHhcCCCCccccc-cceeeEEecCCCCCCCCeEEEEeeccc---------c-ccC----------CCCCCCCeEE
Confidence 112245445666665432 233455544322245776654322111 0 000 0001123466
Q ss_pred EEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCc
Q psy11618 633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRST 712 (1381)
Q Consensus 633 I~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SD 712 (1381)
+.+..++|+|||+|+|+|+||.+.|.||+||++||.|++.+++++|+++|++++++++++..++. .|+ .+..+|
T Consensus 384 ~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~~~~ 457 (560)
T PRK02106 384 AHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPG---ADVQTD 457 (560)
T ss_pred EEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCC---cccCCH
Confidence 66788999999999999999999999999999999999999999999999999998888755443 232 234688
Q ss_pred hhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHHH
Q psy11618 713 HSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFL 783 (1381)
Q Consensus 713 EeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~l 783 (1381)
|+|++|+|+...+++|++||||||+ |++||||+++||||++|||||||||||++|++|||+|+||+|.=
T Consensus 458 ~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer 526 (560)
T PRK02106 458 EEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK 526 (560)
T ss_pred HHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999996 55899999999999999999999999999999999999999864
No 4
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=9.6e-92 Score=842.44 Aligned_cols=497 Identities=23% Similarity=0.316 Sum_probs=354.3
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCCccccccCCcccCcccccccccccccCCCceeec
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKI 239 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i~~ 239 (1381)
.++|||||||||+|||++|+|||| +.||+|||||+++.....++. ......+..||+|++.||.. .+++++.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~~----~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQAF----ISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCccccccc----cCCCceec
Confidence 457999999999999999999998 589999999986422222211 11223446799999999863 45778999
Q ss_pred ccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCCCCc
Q psy11618 240 TAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENN 319 (1381)
Q Consensus 240 pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~ 319 (1381)
+|||++||||+||+|+|.||+++|||+ +||+|+++.|||+|.|+.... .+.. +
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-------------------~~~~--~ 178 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-------------------WPKV--A 178 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc-------------------CCCc--C
Confidence 999999999999999999999999964 689999999999999975310 0122 5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCCCCC--CcccccCCCCC--CCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCC
Q psy11618 320 IIREIFETSAQELGYPCPKDMNDRYV--DVGFAELPGMT--RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 395 (1381)
Q Consensus 320 pl~~~f~eA~eeLG~p~~~D~N~g~~--~~G~s~~~~ti--~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g 395 (1381)
+..+++.+|++|+|++. .|+... ..|. ....++ ++|+|+++++ ++ +++ +|+|++|+++|+|+||++|++
T Consensus 179 ~~~~~~~~a~~e~G~~~---~n~~~~d~~~G~-~~g~~i~~~~g~R~saa~-l~-~~~-~~~nl~Vl~~a~V~rIl~~~~ 251 (587)
T PLN02785 179 PWQAALRDSLLEVGVSP---FNGFTYDHVYGT-KVGGTIFDEFGRRHTAAE-LL-AAG-NPNKLRVLLHATVQKIVFDTS 251 (587)
T ss_pred hHHHHHHHHHHHcCCCc---cCCCCCCCccce-eeeEEEeCCCCEEcCHHH-HH-hhc-CCCCeEEEeCCEEEEEEEcCC
Confidence 78899999999999973 332220 1121 112234 5699999886 43 566 789999999999999999832
Q ss_pred ---CeEEEEEEEecCCeEEEE----ecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCC
Q psy11618 396 ---NVATGVEYVNSKGETVRV----TANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFT 467 (1381)
Q Consensus 396 ---~RAtGVE~vd~~Gr~~tV----~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~ 467 (1381)
+||+||++.+.+|+++++ +++||||+||||++|||+||+|||||++||+++||||++|+| ||||+|||+...
T Consensus 252 ~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~ 331 (587)
T PLN02785 252 GKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS 331 (587)
T ss_pred CCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc
Confidence 389999998866776655 367899999999999999999999999999999999999999 999999999984
Q ss_pred ceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchh
Q psy11618 468 GPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKR 547 (1381)
Q Consensus 468 ~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~ 547 (1381)
+.+..+++.. +.....|..++.|++....+. +..+
T Consensus 332 -i~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~------------------------------------~~~~--- 366 (587)
T PLN02785 332 -IFVPSKAPVE-----QSLIQTVGITKMGVYIEASSG------------------------------------FGQS--- 366 (587)
T ss_pred -eEEEeCCCch-----hhhHhhhhhhccccceecccc------------------------------------cccC---
Confidence 7777665431 111112222233332100000 0000
Q ss_pred hhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCC
Q psy11618 548 TVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR 627 (1381)
Q Consensus 548 tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~ 627 (1381)
.+ ......++.+.. ..++.........|+.. .....-... .+...
T Consensus 367 ----~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~------~~~~~ 411 (587)
T PLN02785 367 ----PD----SIHCHHGIMSAE----IGQLSTIPPKQRTPEAI-----------------QAYIHRKKN------LPHEA 411 (587)
T ss_pred ----ch----hhhhhccccccc----cccccccCcccccchhh-----------------hhhccCccc------ccccc
Confidence 00 000001111100 00000000000111100 000000000 00000
Q ss_pred CCeEEEEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhccccccc--------
Q psy11618 628 TDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL-------- 699 (1381)
Q Consensus 628 ~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~-------- 699 (1381)
.....+...+++|+|||+|||+|+||.++|.||+||++||.|++.+++|+|.++|++++++++++...+..+
T Consensus 412 ~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 491 (587)
T PLN02785 412 FNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMS 491 (587)
T ss_pred cccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccc
Confidence 011234567889999999999999999999999999999999999999999999999999998876433210
Q ss_pred ---CCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHH
Q psy11618 700 ---NLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAI 776 (1381)
Q Consensus 700 ---plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqAp 776 (1381)
+.+..+. ..++|++|++|+|+++.|+||++|||||| +|||+++|||||+|||||||||||.+|++|||+|
T Consensus 492 ~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~at 564 (587)
T PLN02785 492 VKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQAT 564 (587)
T ss_pred cccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHH
Confidence 0000111 13577899999999999999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy11618 777 SFLLLFLF 784 (1381)
Q Consensus 777 VyMIA~l~ 784 (1381)
+||||-=.
T Consensus 565 v~miaer~ 572 (587)
T PLN02785 565 VMMMGRYM 572 (587)
T ss_pred HHHHHHHH
Confidence 99998543
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-91 Score=833.00 Aligned_cols=518 Identities=32% Similarity=0.471 Sum_probs=427.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCC-ccccCCccccccCC-cccCcccccccccccccCCCce
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-HSRIPGMSSVLSLS-EFDHAYLAEPSQFAGLGVRNAR 236 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~-~~~iP~~~~~l~~s-~~DW~Y~TePq~~a~~gl~~r~ 236 (1381)
...+|||||||+|+|||++|+||| +++.||++||||+.... ..++|..+....++ ..+|.|+++||+ +.++|+
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence 456899999999999999999999 78999999999986543 56777766666655 789999999998 468899
Q ss_pred eecccccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCC
Q psy11618 237 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKN 315 (1381)
Q Consensus 237 i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~ 315 (1381)
..|+|||++||||+||+|+|.|+++.|||+|++. |++||+|+|++|||+|+|+......+.+...||.+||+++++++.
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~ 158 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS 158 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence 9999999999999999999999999999999875 889999999999999999976543321145899999999988754
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCC
Q psy11618 316 KENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 395 (1381)
Q Consensus 316 ~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g 395 (1381)
. +|..+++.++++++|++..+|+|+++ +.|++.++.++++|+|+|++++|++|+. +|+|++|.|++.|+||++| +
T Consensus 159 ~--~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r~sa~~a~l~~a~-~~~nl~v~t~a~v~ri~~~-~ 233 (542)
T COG2303 159 P--NPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILLE-G 233 (542)
T ss_pred c--hHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeEeechhhcchhHh-cCCceEEecCCEEEEEEEE-C
Confidence 4 89999999999999999999999998 8899988888889999999999999988 9999999999999999998 8
Q ss_pred CeEEEEEEEecCCe-EEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEEe
Q psy11618 396 NVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAF 473 (1381)
Q Consensus 396 ~RAtGVE~vd~~Gr-~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l 473 (1381)
+|++||++...+++ .+...|+||||+||||||||||||+|||||++++.++||+++.|+| ||+|+|||.... +.++.
T Consensus 234 ~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~-~~~~~ 312 (542)
T COG2303 234 DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIY-VAFEA 312 (542)
T ss_pred CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhh-hheec
Confidence 89999999874332 4666677899999999999999999999999999999999999999 999999999884 66655
Q ss_pred cCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhHH
Q psy11618 474 SAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQE 553 (1381)
Q Consensus 474 ~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~ 553 (1381)
+.+.. .. ..++.. . + ..
T Consensus 313 ~~~~~-~~------------~~~~~~--------------------~--------------~----------------~~ 329 (542)
T COG2303 313 TEPTN-DS------------VLSLFS--------------------K--------------L----------------GI 329 (542)
T ss_pred cCccc-cc------------cccccc--------------------c--------------c----------------cc
Confidence 44321 00 000000 0 0 00
Q ss_pred HHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEEE
Q psy11618 554 MVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVI 633 (1381)
Q Consensus 554 ~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI 633 (1381)
...+|...++|+.+... .+ .+|..++.....||.|+++.+.+... . ...+...+++
T Consensus 330 ~~~~~~~~~~G~~~~~~-~~-~gf~~~~~~~~~p~~~~~~~~~~~~~---------------~-------~~~~~~~~~~ 385 (542)
T COG2303 330 GADRYLLTRDGPGATNH-FE-GGFVRSGPAGEYPDGQYHFAPLPLAI---------------R-------AAGAEHGFTL 385 (542)
T ss_pred cceeEEeecCCCccccc-cc-ccccccCccccCCCcccccccccccc---------------c-------ccccCCccEE
Confidence 01223334556554322 11 23666665567888887765443200 0 1123456788
Q ss_pred EEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCch
Q psy11618 634 SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTH 713 (1381)
Q Consensus 634 ~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDE 713 (1381)
.....+|.|||+|+++|.||.+.|.|++||.+++.|.+.+++++|.+|++..+++.++....+. .| ....++||
T Consensus 386 ~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~---~~---~~~~~~~~ 459 (542)
T COG2303 386 HVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAEL---AP---GPRVTTDE 459 (542)
T ss_pred eeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhh---cC---CCccccHH
Confidence 8899999999999999999999999999999999999999999999999999877776665543 12 24567899
Q ss_pred hHHHHHhcccCCCcccccCccccCCCCCCcccC-CCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHH
Q psy11618 714 SWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVT-PDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLF 782 (1381)
Q Consensus 714 eIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVD-s~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~ 782 (1381)
|+++|+++...|.+||+|||||| +||++||| +++||||++|||||||||||+++++|||+|++|+|.
T Consensus 460 ~~~~~~~~~~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~ 527 (542)
T COG2303 460 DISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAE 527 (542)
T ss_pred HHHHHHHhccCccccccccccCC--CCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHH
Confidence 99999999999999999999999 56666666 999999999999999999999999999999999985
No 6
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=6.6e-66 Score=562.48 Aligned_cols=290 Identities=42% Similarity=0.647 Sum_probs=240.6
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccC-CccccccCCcccCcccccccccccccCCCceeeccc
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP-GMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA 241 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP-~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i~~pR 241 (1381)
|||||||||+|||++|+||||++++||+|||||++.......+ ........++++|.|.+.|++. .+++...++|
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 8999999999999999999999778999999999765433222 1122223457899998888874 5788899999
Q ss_pred ccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccc-cCCCCCCCc
Q psy11618 242 GKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPV-GLFKNKENN 319 (1381)
Q Consensus 242 GKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~V-s~~p~~e~~ 319 (1381)
||++||||+||+|+|.|++++|||+|++. |.++|+||+++|||+|+|+...++ ++.||.+|++++ +.++.. .
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~--~ 150 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYP--S 150 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCH--C
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCC--C
Confidence 99999999999999999999999999986 888999999999999999998665 567999999999 334444 6
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEec-CCCeE
Q psy11618 320 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVA 398 (1381)
Q Consensus 320 pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd-~g~RA 398 (1381)
+..+.+.+|++++|++.+.|.++++ .+|+|..+.++.+|+|+|++++|++++. +|+|++|+++|+|+||+++ +++||
T Consensus 151 ~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~a 228 (296)
T PF00732_consen 151 PMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATTYLPPAL-KRPNLTLLTNARVTRIIFDGDGGRA 228 (296)
T ss_dssp THHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHHHHHHHT-TTTTEEEEESEEEEEEEEETTSTEE
T ss_pred HHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhcccchhh-ccCCccEEcCcEEEEEeeeccccce
Confidence 7889999999999999776888776 8898887767889999999999999988 8999999999999999997 67899
Q ss_pred EEEEEEecCCe-EEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCccchhccccc
Q psy11618 399 TGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNA 464 (1381)
Q Consensus 399 tGVE~vd~~Gr-~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLPVGrNLQDHp 464 (1381)
+||++.+.+++ .+++.++||||+||||++||||||+|||||+++|++.||++++|+||||||||||
T Consensus 229 ~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 229 TGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 99999997555 4566666899999999999999999999999999999999999999999999997
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=2.4e-47 Score=454.63 Aligned_cols=482 Identities=16% Similarity=0.146 Sum_probs=282.3
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCc---------c--ccCC--c----cccccCC-----------
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH---------S--RIPG--M----SSVLSLS----------- 214 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~---------~--~iP~--~----~~~l~~s----------- 214 (1381)
||+||||||++|+++|+.++++ |.||+++|+|...... . +-+. . ...++..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 7999999999999999999986 8999999999754210 0 0000 0 0000000
Q ss_pred --cccCcccccccccccc-cCC---C--ce-eecccccccCccccccceEEecCCccchHHHhhcCCCCC--ChhhHHHH
Q psy11618 215 --EFDHAYLAEPSQFAGL-GVR---N--AR-IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW--GYDETLKY 283 (1381)
Q Consensus 215 --~~DW~Y~TePq~~a~~-gl~---~--r~-i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GW--swedLlPY 283 (1381)
.-.|+- .|..+.-+ +.| + +. ....|-|++||+|.+|++.+.|.+++|- .| .+ .|| +|||++||
T Consensus 80 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~Py 153 (544)
T TIGR02462 80 LDPTAWSA--SIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWDRL 153 (544)
T ss_pred CCcccccc--CCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHHHH
Confidence 011221 11110000 000 0 01 1135779999999999999999999652 22 23 699 99999999
Q ss_pred HHHhcccccCCcccCCCCCCCCCCccccCCCCCCCchHHHHHHHHHHHc-CCCCCCCCCCCCCCcccccCCCCCCCCccc
Q psy11618 284 FVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL-GYPCPKDMNDRYVDVGFAELPGMTRYGLRF 362 (1381)
Q Consensus 284 FkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeL-G~p~~~D~N~g~~~~G~s~~~~ti~~G~Rs 362 (1381)
|+|+|+..+.+. . .- .++.. .+...+ +..++. |.+.. ...+ .+..+. .|..+.|+
T Consensus 154 Y~~Ae~~~gv~g-----------~-~~-~~~~~-~~~~~~---~~~~~~~g~~~~--~~~P---lA~~~~--~c~~~ak~ 209 (544)
T TIGR02462 154 YTKAESLIGTST-----------D-QF-DESIR-HNLVLR---KLQDEYKGQRDF--QPLP---LACHRR--TDPTYVEW 209 (544)
T ss_pred HHHHHHHhCCCC-----------C-cC-CCccc-chhHHH---HHHHHhcccccc--ccCc---hhhhcc--CCCcccee
Confidence 999999864331 1 00 00010 022222 233343 33111 0111 111110 23346677
Q ss_pred chhhhcchhhhc---CCCCeEEEcCcEEEEEEecC-C-CeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618 363 SAADAYLTPIAG---KRTNLYVLKRSKVTKVIIND-Q-NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 436 (1381)
Q Consensus 363 SAa~AYL~Pa~~---~R~NLtILTnA~VtRIlfd~-g-~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG 436 (1381)
|+..+.+.++.. +++|++|++||+|+||++|+ + ++|+||+|.|. +|++++++|+ .||+|||||+|||||++||
T Consensus 210 s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~ 288 (544)
T TIGR02462 210 HSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSG 288 (544)
T ss_pred cCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCC
Confidence 765555654331 38899999999999999983 3 68999999986 6888999996 7999999999999999999
Q ss_pred CCCCCccccCCCCcccCCc-cchhccccccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccc
Q psy11618 437 IGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVK 515 (1381)
Q Consensus 437 IGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~ 515 (1381)
+|++.+ ..|+.+....+ ||||+|||+... +....+++.. .+.+|+.. . ..++.+
T Consensus 289 ~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~~-~~~~~~~~~~-------------~~~~~~~~----~---~~~~~~-- 343 (544)
T TIGR02462 289 FGQLGR--PDPTNPPPLLPSLGRYITEQSMTF-CQIVLSTELV-------------DSVRSDPR----G---LDWWKE-- 343 (544)
T ss_pred CCCCcC--CCCcCCCCCCCCCCcchhcCCCcc-EEEEecchhh-------------hhccCCcc----c---cccccc--
Confidence 986542 44554443225 999999999873 5555554321 00111100 0 000000
Q ss_pred cccccccccccccccccccCCCcccccccchhhhhhHHHHHHHHHc-CCCCCccccccceEEEeecCCCCCCCCeeeeee
Q psy11618 516 IPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVN-RIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLL 594 (1381)
Q Consensus 516 ~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~~eYl~~-~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~ 594 (1381)
+ . .++... ..++.. ..+.+ ..|+......
T Consensus 344 ----------------~-------------------~---~~~~~~~~~~~~~-------i~~~~-----~~~~~~~~~~ 373 (544)
T TIGR02462 344 ----------------K-------------------V---ANHMMKHPEDPLP-------IPFRD-----PEPQVTTPFT 373 (544)
T ss_pred ----------------c-------------------c---hhhhccccCCccc-------ccccc-----cCcccccccc
Confidence 0 0 000000 000000 00000 0000000000
Q ss_pred ccccccchhhhhhhhccccchhHHHHHhccCCCCCeE-EEEEeecccCcCcEEEeec--CCCCCCccccCCCCCChhhHH
Q psy11618 595 YFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG-VISMSLVNPKSCGKVTLKS--ADPLAPPCIDTGILSEPEDLA 671 (1381)
Q Consensus 595 p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~-tI~v~Ll~P~SRGsV~L~S--sDP~d~PvIDpNYLSdP~Dle 671 (1381)
...-|+........ .++.. .+........ .-....+.|....+|++++ +|..+.|+.+.+|--++.|++
T Consensus 374 ~~~~w~~~~~~~~~-~~g~~-------~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~ 445 (544)
T TIGR02462 374 EEHPWHTQIHRDAF-SYGAV-------GPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSK 445 (544)
T ss_pred cccccchhhhhhhh-hcccc-------cccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHH
Confidence 00000000000000 00000 0000011111 1234566799999999976 599999998888888999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeE
Q psy11618 672 TLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV 751 (1381)
Q Consensus 672 ~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRV 751 (1381)
.+.++.+.+++++ ++.|.... . +.. .+. ...+++|++||||||++ +++||||+++||
T Consensus 446 ~~~~~~~~~~~i~-----~~~G~~~~-----~-------~~~---~~~--~~~~~~H~~Gt~rMG~d-p~~sVvd~~~rv 502 (544)
T TIGR02462 446 RARRMMTDMCNVA-----AKIGGYLP-----G-------SLP---QFM--EPGLALHLAGTTRIGFD-EQTTVANTDSKV 502 (544)
T ss_pred HHHHHHHHHHHHH-----HHcCCCcc-----c-------ccc---ccc--CCCccccCCCCeecCCC-CCCceECCCCcE
Confidence 9999999998874 44454221 0 000 011 12357899999999965 447999999999
Q ss_pred eCcCCcEEecccCCCCCCCCCchHHHHHHHH
Q psy11618 752 KGIKGLRVADISVLPNAIITQSDAISFLLLF 782 (1381)
Q Consensus 752 hGVdNLRVVDASVfPtiPSgNpqApVyMIA~ 782 (1381)
||++||||+|+|+||+.+++||+.|+||+|.
T Consensus 503 ~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~ 533 (544)
T TIGR02462 503 HNFKNLYVGGNGNIPTAFGANPTLTSMCYAI 533 (544)
T ss_pred eCCCCeEEeccCcCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999999985
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=1e-36 Score=301.13 Aligned_cols=141 Identities=36% Similarity=0.548 Sum_probs=117.3
Q ss_pred cCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhccccccc-CCccCCCCCCCCchhHHHH
Q psy11618 640 PKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL-NLEACSQYPWRSTHSWTCY 718 (1381)
Q Consensus 640 P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~-plPg~~~~~~~SDEeIe~y 718 (1381)
|+|||+|+|+|+||.+.|.|++||++||+|++.+++|+|.++|+++++ +++++..+..+ +.+.+......+|++|++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999999999999999999999999998 77776544422 1223333445788899999
Q ss_pred HhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHH
Q psy11618 719 IRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLF 782 (1381)
Q Consensus 719 IR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~ 782 (1381)
+|++..+.+|++||||||+++|+ ||||+++||||++||||+||||||+.+++|||+|+||+|.
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ 142 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAE 142 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHee
Confidence 99999999999999999998875 9999999999999999999999999999999999999984
No 9
>PRK07121 hypothetical protein; Validated
Probab=99.29 E-value=1.1e-10 Score=139.22 Aligned_cols=58 Identities=29% Similarity=0.454 Sum_probs=48.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm 433 (1381)
++.|.+++++++|++++.|+++|++||++.+ +|+.++++|+|.||+|+|.++. |.++.
T Consensus 188 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 188 AALGVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 5678999999999999987557899999976 7777889997899999998764 54444
No 10
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.21 E-value=2.5e-10 Score=137.20 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=51.9
Q ss_pred cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh-hHHHHHH
Q psy11618 368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA-NAQLLLL 434 (1381)
Q Consensus 368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~-SPqLLml 434 (1381)
+.+.+. +++|++++++++|++++.| +++++||++.+ +|++++++|+|.||+|||.++ .+.++..
T Consensus 179 l~~~~~-~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~~~ 243 (513)
T PRK12837 179 FLAALA-RFPNARLRLNTPLVELVVE-DGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMRAR 243 (513)
T ss_pred HHHHHH-hCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHHHH
Confidence 344444 5679999999999999987 67999999876 788889999889999999996 4555543
No 11
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.21 E-value=2.6e-10 Score=134.52 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=52.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 439 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP 439 (1381)
++.+.+++++++|++++.+ ++|++||++.+.+|+..+++| |.||+|+|.+++++-++.+-.|+
T Consensus 142 ~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 142 ERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence 4678999999999999987 678999998654677778888 57999999999988777766654
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.21 E-value=2.3e-10 Score=139.79 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=50.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLL 434 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLml 434 (1381)
+++|++|+++++|++++.|+++|++||++.+ +|++++++|+|-||+|+|.++. |.+++.
T Consensus 224 ~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 224 KDAGVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HhCCceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 5789999999999999997567999999976 7888899998889999999875 665553
No 13
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.12 E-value=2.1e-10 Score=126.38 Aligned_cols=55 Identities=33% Similarity=0.500 Sum_probs=42.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
++.+.+++++++|++|..+ +++++||+..+ | +++| +.||+|||+ +|++++..+|+
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~--g---~i~a-d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD--G---EIRA-DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHTT-EEEESEEEEEEEEE-TTEEEEEEETT--E---EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred HHhhhhccccccccchhhc-ccccccccccc--c---cccc-ceeEecccc-cceeeeecccc
Confidence 3568999999999999998 77899998754 3 3777 479999996 89999998874
No 14
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.11 E-value=6.1e-10 Score=135.38 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=48.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm 433 (1381)
++.|++++++++|++++.| ++|++||++.+ +|++++++|+|.||+|+|.++. ++++.
T Consensus 219 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 219 LAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHHH
Confidence 5679999999999999987 67999999976 7888899998899999998876 44443
No 15
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.09 E-value=1e-09 Score=133.77 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=48.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH-HHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA-QLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP-qLLm 433 (1381)
++.|.+++++++|++++.+ ++|++||+..+ +|++.+++|+|-||+|+|.++.. ++++
T Consensus 228 ~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 228 LRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHCCCEEEecCEeeEEEec-CCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 4678999999999999876 67999999876 78788899998999999988854 4444
No 16
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.06 E-value=1.8e-09 Score=124.97 Aligned_cols=56 Identities=32% Similarity=0.468 Sum_probs=44.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
++.+.++..+++|++++.| ++|++||++.+. +|+.++++|+ .||+|+|.++. +++.
T Consensus 152 ~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 152 EEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred hhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 3456999999999999998 669999999953 7899999997 89999999999 4443
No 17
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.01 E-value=3.6e-09 Score=124.99 Aligned_cols=51 Identities=24% Similarity=0.456 Sum_probs=42.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|++|+++++|++++.+ +++++||...+ +|+.++++| |.||+|+|.++.
T Consensus 140 ~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIEN-DNTCIGAICLK-DNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEec-CCEEEEEEEEE-CCcEEEEEc-CeEEEccCcccc
Confidence 4679999999999999876 57899998776 666678899 579999999764
No 18
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.00 E-value=5.9e-09 Score=126.60 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=48.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
.+.+.++.++++|+++..+ +++++||++.|. +|++.+++|+ .||.|||+ .+.++....|+
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence 3568999999999999886 678999999774 5666789995 69999995 57888877664
No 19
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.99 E-value=8.3e-09 Score=120.89 Aligned_cols=57 Identities=25% Similarity=0.333 Sum_probs=44.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLL 432 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLL 432 (1381)
++.++++.++++|++++.|++++++||++.+.+|+.+.+++ |.||+|+|+... |+++
T Consensus 141 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 141 KKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHHHH
Confidence 46689999999999999975678999999874555555666 689999998765 4443
No 20
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.96 E-value=1.1e-08 Score=125.72 Aligned_cols=51 Identities=25% Similarity=0.306 Sum_probs=41.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
+++|+++..+++|+++..+ +++++||...+. +|+.++++| |.||+|+|..+
T Consensus 144 ~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 4457999999999999887 579999987543 566667888 57999999876
No 21
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.95 E-value=9.7e-09 Score=125.00 Aligned_cols=57 Identities=25% Similarity=0.413 Sum_probs=48.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
++.|++++++++|++++.| ++|++||++.+ +|++++++|+|.||+|+|.+++-+-|+
T Consensus 219 ~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~ 275 (557)
T PRK07843 219 QRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMR 275 (557)
T ss_pred HcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHH
Confidence 5679999999999999987 67999999876 788889999888999999998754443
No 22
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.94 E-value=2.4e-08 Score=121.86 Aligned_cols=55 Identities=16% Similarity=0.337 Sum_probs=45.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 431 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL 431 (1381)
++.+.++++++.|+++..+ +++++||++.+ ++++++++|+|.||+|+|.+..-.=
T Consensus 225 ~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 225 LDLGIPILTGTPARELLTE-GGRVVGARVID-AGGERRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HhCCCEEEeCCEEEEEEee-CCEEEEEEEEc-CCceEEEEeCCEEEEcCCCccchHH
Confidence 5679999999999999987 67999999887 4445678888899999998874433
No 23
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.93 E-value=2.2e-08 Score=122.59 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=46.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 432 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL 432 (1381)
++.+.++.++++|++++.| +++++||++.+ +|++++++|+|.||+|+|+..+-.-+
T Consensus 228 ~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 228 EDLGVRIWESAPARELLRE-DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 5678999999999999887 67999999877 56667899978999999999764433
No 24
>PRK08275 putative oxidoreductase; Provisional
Probab=98.93 E-value=1.2e-08 Score=124.14 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=43.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
++.|+++++++.|++++.+++++++||...+. +|+.++++| |.||+|+|+.+
T Consensus 148 ~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 148 KRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 46799999999999999874578999988653 676677888 57999999975
No 25
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=1.8e-08 Score=122.04 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=45.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.++|++++++++|++++.|+++|++||...+ ++|+.++++| |-||+|+|.++.
T Consensus 145 ~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 145 IKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred hcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 4689999999999999987556799998876 4777788999 579999998874
No 26
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.89 E-value=3.5e-08 Score=120.75 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=48.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm 433 (1381)
++.+.+++++++|++++.+ +++++||++.+ +|++++++|+|.||+|+|+++. ++++.
T Consensus 232 ~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 232 RARGVRILTQTDVESLETD-HGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HhCCCEEEeCCEEEEEEee-CCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHHH
Confidence 4678999999999999886 67999999876 7888889988889999999887 44444
No 27
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.89 E-value=1.7e-08 Score=132.14 Aligned_cols=53 Identities=25% Similarity=0.445 Sum_probs=44.7
Q ss_pred CCCeEEEcCcEEEEEEecC-----C---CeEEEEEEEec---CCeEEEEecCcEEEEcCCchhhH
Q psy11618 376 RTNLYVLKRSKVTKVIIND-----Q---NVATGVEYVNS---KGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~-----g---~RAtGVE~vd~---~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
+.+.+|+++++|++++.|+ | +|++||++.+. +|+.++++| |-||+|+|.++.-
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccC
Confidence 4689999999999999873 2 38999999875 677788999 5799999998863
No 28
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.89 E-value=2.1e-08 Score=120.79 Aligned_cols=68 Identities=26% Similarity=0.269 Sum_probs=46.2
Q ss_pred hcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618 367 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIG 438 (1381)
Q Consensus 367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG 438 (1381)
++.+.++ +++++++.++++|+++.-++++++ .|+..+ .+|+..+++|+ .||+|||+ .|.++++.+|+.
T Consensus 188 aL~~~a~-~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 188 QLVGYLQ-KQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHH-hCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 3333333 445699999999999987534433 344432 24554568885 79999997 577889999875
No 29
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.87 E-value=2.8e-08 Score=123.04 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
.+.|+++++++.|++++.+++++++||...+. +|+.+.++|+ -||+|+|.++..
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~~ 252 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAH-STILATGGYGRA 252 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCccc
Confidence 45799999999999998875579999998764 6888888985 799999998753
No 30
>PRK12839 hypothetical protein; Provisional
Probab=98.86 E-value=3.7e-08 Score=120.57 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=45.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQL 431 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqL 431 (1381)
++.+.+|+++++|++++.++++|++||++.+++| +.+++++|.||+|+|+++. +..
T Consensus 225 ~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g-~~~i~aak~VVLAtGGf~~n~~~ 281 (572)
T PRK12839 225 DDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDG-AVTVEATRGVVLATGGFPNDVDR 281 (572)
T ss_pred HHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCC-cEEEEeCCEEEEcCCCcccCHHH
Confidence 4678999999999999887567999999877444 4667777899999999887 443
No 31
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.86 E-value=3.6e-08 Score=118.66 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=45.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLL 434 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLml 434 (1381)
++.++++.++++|+++..+ +++++||++...+|++++++| |.||+|+|.++. |..+..
T Consensus 201 ~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCHHHHHH
Confidence 4568999999999999865 678999998764556678888 589999997765 455554
No 32
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.85 E-value=2.6e-08 Score=118.07 Aligned_cols=65 Identities=26% Similarity=0.276 Sum_probs=47.7
Q ss_pred hcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCC
Q psy11618 367 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK 440 (1381)
Q Consensus 367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPk 440 (1381)
++...+. ..|.++..|++|++|..++++ |.+.+ ++|+++ ++| |-||.||| ..+-+|++.+|+.+.
T Consensus 158 ~l~e~a~--~~g~~i~ln~eV~~i~~~~dg----~~~~~~~~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~~ 223 (429)
T COG0579 158 ALAEEAQ--ANGVELRLNTEVTGIEKQSDG----VFVLNTSNGEET-LEA-KFVINAAG-LYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHH--HcCCEEEecCeeeEEEEeCCc----eEEEEecCCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCcc
Confidence 4444444 459999999999999987433 33322 256665 888 47999999 778899999999773
No 33
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.84 E-value=3.1e-08 Score=120.74 Aligned_cols=52 Identities=17% Similarity=0.352 Sum_probs=43.7
Q ss_pred CCCCeEEEcCcEEEEEEecC-CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|++|+++++|++++.|+ +++++||...+ +|+.+.++| |-||+|+|..+.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEc-CEEEEcCCCCcc
Confidence 45799999999999999873 47999998876 787778888 579999999753
No 34
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.83 E-value=5.1e-08 Score=120.33 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=44.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.+.|++++++++|++++.++++|++||...+. +|+.+.++|+ -||+|+|.++.
T Consensus 177 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 46799999999999999854679999998653 6887888885 79999999875
No 35
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.83 E-value=3e-08 Score=114.73 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=40.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
.+.+.++..+++|+++..++++++++|+.. +| +++|+ .||+|||+- ++++....|+
T Consensus 194 ~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~--~g---~i~a~-~vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 194 DRRGVDIIQNCEVTGFIRRDGGRVIGVETT--RG---FIGAK-KVGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HHCCCEEEeCCEEEEEEEcCCCcEEEEEeC--Cc---eEECC-EEEECCChh-hHHHHHHcCC
Confidence 466899999999999976535667777653 34 47775 699999984 5566665554
No 36
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=4.3e-08 Score=120.30 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=45.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.+.|.+++++++|++++.|+++|++||...+. +|+.++++| |-||+|+|..+.
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 46789999999999999865679999998653 687788999 589999999875
No 37
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=6.4e-08 Score=118.26 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=43.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
.+.|++++.++.|++++.| ++|++||...+. +|+.++++| |-||+|+|.++
T Consensus 147 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 4568999999999999987 679999998874 566778888 58999999987
No 38
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.81 E-value=8.7e-08 Score=116.46 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=40.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----CCeEEEEecCcEEEEcCCchh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~----~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
++.++++..+++|++++.+++++++||...+. +++.++++| |-||+|+|...
T Consensus 155 ~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~ 210 (541)
T PRK07804 155 RADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLG 210 (541)
T ss_pred HhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCC
Confidence 35579999999999999875579999998731 233457888 58999999876
No 39
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=8.6e-08 Score=118.84 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=44.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|++++++++|++++.+ ++|++||...+. +|+.+.++|+ .||+|+|.++.
T Consensus 181 ~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 4679999999999999987 579999999874 5777788885 79999999885
No 40
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=6e-08 Score=119.24 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=45.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.++|+++++++.|++++.++++|++||...+. +|+.++++|+ -||+|+|.++.
T Consensus 160 ~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 46789999999999999875579999998653 6777889994 79999999885
No 41
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=7.1e-08 Score=118.43 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=42.6
Q ss_pred CCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 377 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 377 ~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+|+++.++++|++++.++++|++||...+. +|+.+.++| |-||+|+|.++.
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 358999999999999865679999999875 466667788 589999999885
No 42
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.79 E-value=3.7e-08 Score=114.05 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=31.9
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+|+||||||.+|+.+|.+|+++ |++|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999986 899999999964
No 43
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.79 E-value=9e-08 Score=115.58 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=43.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
++|++++++++|+++..+ +++++||...+.+|+.++++| |.||+|+|..+.
T Consensus 141 ~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 141 VPHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred hcCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 368999999999999876 678999998775677778888 589999999875
No 44
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.79 E-value=7.2e-08 Score=117.25 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.+.|+++..++.|++++.+ ++|++||.+.+. +|+.++++| |-||+|+|....
T Consensus 140 ~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 140 LKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 3559999999999999987 679999998763 677678888 589999998763
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.78 E-value=9.9e-08 Score=122.23 Aligned_cols=50 Identities=32% Similarity=0.435 Sum_probs=42.8
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
+.|+++.+++.+++++.+ ++|++||...+. +|+.+.++| |.||+|+|.++
T Consensus 155 ~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEEC-CEEEECCCccc
Confidence 458999999999999887 679999998764 688888888 58999999986
No 46
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=6.8e-08 Score=118.06 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=43.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.++|+++.+++.|++++.+ +++++||...+. +|+.++++| |-||+|+|+.+.
T Consensus 146 ~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 146 RRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred hhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 4679999999999999887 678999987543 677677888 579999999864
No 47
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.76 E-value=8.1e-08 Score=116.67 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=43.2
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec--C------------CeEEEEecCcEEEEcCCchh-hHHHHHH
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS--K------------GETVRVTANKEVILTAGAIA-NAQLLLL 434 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~--~------------Gr~~tV~ArKEVILSAGAI~-SPqLLml 434 (1381)
+.+++++++++|++++.| ++|++||+..+. + +++++++| |-||+|+|.++ .++.+..
T Consensus 164 ~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~~~ 235 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELVRR 235 (549)
T ss_pred hCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHHHH
Confidence 457999999999999987 689999997421 1 23467888 57999999887 4555553
No 48
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.76 E-value=1.4e-07 Score=114.41 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=44.3
Q ss_pred CCCCeEEEcCcEEEEEEecC-----CCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIIND-----QNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~-----g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|++++++++|++++.++ +++++||.+.+. +|+.++++| |-||+|+|.++.
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 56799999999999998763 379999998764 577778888 589999999874
No 49
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.75 E-value=5.3e-08 Score=117.06 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 439 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP 439 (1381)
++.+.++..+++|++|.-+++++. .|+..+ .+|+..+++|+ .||+|||+ .|.++...+|+.+
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~~ 251 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIPE 251 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCCc
Confidence 356899999999999987533322 233332 24555578885 79999996 5788899999753
No 50
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=2e-07 Score=114.62 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.+.|.++..++.|++++.+++++++||.+.+. +|+.+.++| |-||+|+|..+.
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 45789999999999999875679999998753 577677888 579999998874
No 51
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.74 E-value=5e-08 Score=112.67 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=30.7
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
|++|||||-+|+.+|.+|+++ |++|.|+|++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCCc
Confidence 899999999999999999986 899999999853
No 52
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.74 E-value=2.3e-07 Score=113.91 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=43.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+.+|+++.+++.|++++.+ +++++||...+. +|+.+.++| |-||+|+|....
T Consensus 145 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 4469999999999999987 679999988653 677778888 589999998764
No 53
>PLN02815 L-aspartate oxidase
Probab=98.73 E-value=1.7e-07 Score=115.46 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=43.5
Q ss_pred CCCCeEEEcCcEEEEEEec-CCC--eEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIIN-DQN--VATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd-~g~--RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|+++++++.|++++.| +++ +++||.+.+. +|+.++++| |-||+|+|.++-
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 4579999999999999986 343 4999998754 677788888 589999998863
No 54
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=2.2e-07 Score=113.89 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=43.6
Q ss_pred CCCCeEEEcCcEEEEEEecCC---CeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQ---NVATGVEYVN-SKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g---~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.+.|+++.+++.|++++.+++ +|++||...+ .+|+.+.++| |-||+|+|..+.
T Consensus 151 ~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 151 VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 467899999999999998732 7999998865 3677778888 579999999874
No 55
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.72 E-value=1.8e-07 Score=113.14 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=41.1
Q ss_pred CeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618 378 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 439 (1381)
Q Consensus 378 NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP 439 (1381)
++++.+|++|++|.-+ +++..+|+.. +| +++|+ .||+|||+ .|.++++.+|+|.
T Consensus 231 ~v~i~~~t~V~~I~~~-~~~~~~V~T~--~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~~ 284 (497)
T PTZ00383 231 KISINLNTEVLNIERS-NDSLYKIHTN--RG---EIRAR-FVVVSACG-YSLLFAQKMGYGL 284 (497)
T ss_pred CEEEEeCCEEEEEEec-CCCeEEEEEC--CC---EEEeC-EEEECcCh-hHHHHHHHhCCCC
Confidence 4899999999999876 3444455432 34 57885 69999996 4889999999864
No 56
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.72 E-value=1.1e-07 Score=110.01 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=32.7
Q ss_pred cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
+||++|||||.+|+.+|.+|++. ||++|.|+|++++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 48999999999999999999974 6899999999864
No 57
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.72 E-value=2e-07 Score=114.44 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=44.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|+++..++.|++++.+ +++++||...+. +|+.+.++| |-||+|+|..+.
T Consensus 144 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 4579999999999999987 679999988653 677788888 589999999774
No 58
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=2.7e-07 Score=112.93 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=43.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|+++..+++|++++.+ +++++||...+. +|+.++++|+ -||+|+|..+.
T Consensus 149 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~ 201 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAGR 201 (577)
T ss_pred hcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhcc
Confidence 3479999999999999987 578999998763 6766788884 79999999863
No 59
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.69 E-value=3.6e-07 Score=109.55 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=42.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|+++.++++|++++.+ +++++||...+ +|+..+++| |.||+|+|+...
T Consensus 140 ~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~-~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 140 NHPNIRIIEGENALDLLIE-TGRVVGVWVWN-RETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred hcCCcEEEECeEeeeeecc-CCEEEEEEEEE-CCcEEEEEc-CEEEECCCcccC
Confidence 3479999999999999886 57899999887 455567888 589999999874
No 60
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.69 E-value=1.9e-07 Score=116.10 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.+.|+++..++.|++++.| +++++||.+.+ .+|+.+.++| |-||+|+|.++.
T Consensus 169 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 169 IKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 4679999999999999987 67999999986 3788888889 579999998774
No 61
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.68 E-value=2.7e-07 Score=105.10 Aligned_cols=33 Identities=42% Similarity=0.674 Sum_probs=31.0
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
||+||||||.+|+.+|..|+++ |++|.|+|+++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 7999999999999999999986 89999999975
No 62
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.67 E-value=2.4e-07 Score=112.09 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|+++..++.|+++..+ +++++||+..+ +|+.++++|+ .||+|+|.++.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD-DGAVAGVLAAT-AGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred hCCCCEEEECcChhheeec-CCEEEEEEEEe-CCeEEEEECC-EEEEcCCCCcC
Confidence 4568999999999999876 67999999887 5555678884 79999999863
No 63
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.66 E-value=2.1e-07 Score=112.45 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=46.9
Q ss_pred hhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618 366 DAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP 439 (1381)
Q Consensus 366 ~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP 439 (1381)
+++.+.+. ++++.++.+|++|+++..+++++.+ |+..+. +|++.+++|+ .||+|||+ .|-++++.+|+.+
T Consensus 188 ~aL~~~l~-~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~~ 258 (497)
T PRK13339 188 RKLAKHLE-SHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHHH-hCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence 34554443 4568999999999999866233322 333221 4544467885 79999996 6788999999753
No 64
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.65 E-value=1.9e-07 Score=110.22 Aligned_cols=37 Identities=49% Similarity=0.631 Sum_probs=33.5
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++||+||||||+||+++|..|+++ |.+|+++|+++.
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~ 39 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNS 39 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCC
Confidence 3569999999999999999999975 999999999864
No 65
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.64 E-value=4.1e-07 Score=112.64 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=48.9
Q ss_pred CCCCeEEEcCcEEEEEEecC-CCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618 375 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 436 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG 436 (1381)
.+.+.++..+++|+++..++ +++++||++.|. +|++++++|+ .||+|||+- |.++....|
T Consensus 243 ~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 46689999999999998864 578999999774 5666688885 799999965 788888776
No 66
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.63 E-value=1.8e-07 Score=111.02 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=34.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~ 196 (1381)
.+.++|++|||||.+|+.+|.+|+|+ ||.+|.|+|++.
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 44569999999999999999999985 689999999984
No 67
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.62 E-value=7.2e-07 Score=106.14 Aligned_cols=67 Identities=25% Similarity=0.237 Sum_probs=50.2
Q ss_pred cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618 368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG 438 (1381)
Q Consensus 368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG 438 (1381)
++.-.. +++|.++..|++|++|.-++++ .--|++.|. +|++++++|+ -|.++||+- |=.+||.|||.
T Consensus 187 l~~~l~-~~~~~~~~~~~eV~~i~r~~dg-~W~v~~~~~~~~~~~~v~a~-FVfvGAGG~-aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQ-KQKGFELHLNHEVTDIKRNGDG-RWEVKVKDLKTGEKREVRAK-FVFVGAGGG-ALPLLQKSGIP 254 (488)
T ss_pred HHHHHH-hCCCcEEEecCEeCeeEECCCC-CEEEEEEecCCCCeEEEECC-EEEECCchH-hHHHHHHcCCh
Confidence 343344 6789999999999999887333 234444443 6788899995 899999975 77899999983
No 68
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.62 E-value=5.3e-07 Score=107.72 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.++||+||||+|-+||++|+-||++ |+||+++|+.+..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~y 39 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYY 39 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCc
Confidence 4579999999999999999999975 9999999998643
No 69
>PLN02661 Putative thiazole synthesis
Probab=98.62 E-value=2.7e-07 Score=107.31 Aligned_cols=38 Identities=37% Similarity=0.422 Sum_probs=33.8
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
...++|++|||||+||+++|..++++++.+|.++|++.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 44579999999999999999999987789999999853
No 70
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.62 E-value=4.8e-07 Score=111.60 Aligned_cols=52 Identities=27% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
++|++++++++|++++.|+++|++||...+. +|+.+.++|+ -||+|+|.++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 4689999999999999875679999999874 5776788885 79999999863
No 71
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=5.9e-07 Score=111.24 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=41.4
Q ss_pred CeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 378 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 378 NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
|+++..+++|++++.+ +++++||...+. +|+.+.++|+ .||+|+|.++.
T Consensus 165 ~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 4999999999999987 678999987653 6777788885 79999998764
No 72
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.60 E-value=6.5e-07 Score=110.77 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=41.8
Q ss_pred CCCeEEEcCcEEEEEEecCC--CeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618 376 RTNLYVLKRSKVTKVIINDQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g--~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
+.+.+++++++|++++.|++ +|++||...+. +|+.++++| |-||+|+|..+
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 34579999999999998732 79999998654 677778888 58999999985
No 73
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.59 E-value=7.5e-07 Score=101.37 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=32.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++||++|||||.+|+.+|..|++. |++|.|+|++.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 369999999999999999999986 89999999985
No 74
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.58 E-value=7.6e-07 Score=108.92 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=49.8
Q ss_pred chhhhcchhhhc--CCCCeEEEcCcEEEEEEec-CC--CeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 363 SAADAYLTPIAG--KRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 363 SAa~AYL~Pa~~--~R~NLtILTnA~VtRIlfd-~g--~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+..++...|..+ +++++++.+|++|++|..+ ++ ++|+||++.+. ++++..+.+++-||++.|.+.+
T Consensus 223 nqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 223 NQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred CchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 344555666431 5779999999999999996 33 79999999862 3345667888999999997743
No 75
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.55 E-value=4.4e-07 Score=112.59 Aligned_cols=34 Identities=35% Similarity=0.413 Sum_probs=32.0
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++|+||||||.+|+.+|.+|+++ |++|.|+|++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 58999999999999999999986 89999999985
No 76
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.54 E-value=3.4e-07 Score=112.12 Aligned_cols=86 Identities=21% Similarity=0.206 Sum_probs=59.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh-----hHHHHHHcCCCCCCccccCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA-----NAQLLLLSGIGPKAHLDEVKI 448 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~-----SPqLLmlSGIGPkd~Le~lGI 448 (1381)
+.++.++..+..|+++..|+++++.||...+. +|+.+.++| |.||+|+|+.+ |+......|=|- ....+.|.
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~aGa 227 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYRAGA 227 (562)
T ss_pred HhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHhcCC
Confidence 34678999999999999885556999988775 688888888 67999999988 444444432221 12234444
Q ss_pred CcccCCccchhccccccC
Q psy11618 449 PVKQDLRVGENLKLNAQF 466 (1381)
Q Consensus 449 pVVvDLPVGrNLQDHp~v 466 (1381)
+ .. ..++-|-||..
T Consensus 228 ~-l~---dme~~Q~hpt~ 241 (562)
T COG1053 228 P-LI---DMEFVQFHPTG 241 (562)
T ss_pred c-cc---CCCccccccce
Confidence 4 22 46677888865
No 77
>KOG1298|consensus
Probab=98.53 E-value=2.2e-07 Score=107.74 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=34.7
Q ss_pred cCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 157 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 157 ~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.+.++|+||||||-+||.+|+.|+++ |+||.|||+-=
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl 78 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDL 78 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccc
Confidence 3455679999999999999999999987 99999999864
No 78
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.52 E-value=1e-07 Score=112.76 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 430 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPq 430 (1381)
++.+.++.++++|++|..+ ++++.+|+. + +++ +++|+ .||+|+|...-|+
T Consensus 120 ~~~gv~i~~~~~V~~i~~~-~~~~f~v~~-~-~~~--~~~a~-~vILAtGG~S~p~ 169 (409)
T PF03486_consen 120 KRLGVEIHFNTRVKSIEKK-EDGVFGVKT-K-NGG--EYEAD-AVILATGGKSYPK 169 (409)
T ss_dssp HHHT-EEE-S--EEEEEEE-TTEEEEEEE-T-TTE--EEEES-EEEE----SSSGG
T ss_pred HHcCCEEEeCCEeeeeeec-CCceeEeec-c-Ccc--cccCC-EEEEecCCCCccc
Confidence 4679999999999999987 566778877 2 333 67774 6999999888776
No 79
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.50 E-value=6.8e-07 Score=104.62 Aligned_cols=38 Identities=34% Similarity=0.561 Sum_probs=34.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 199 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~ 199 (1381)
+.+|+||||||+||..+|...|+. |++|+|+|+|+...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~G 39 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLG 39 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCcccc
Confidence 468999999999999999999974 99999999997543
No 80
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.47 E-value=1.2e-06 Score=99.92 Aligned_cols=33 Identities=36% Similarity=0.502 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
||++|||||.+|+.+|.+|+++ |++|.|+|++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999986 89999999984
No 81
>PRK10015 oxidoreductase; Provisional
Probab=98.46 E-value=7.8e-07 Score=105.31 Aligned_cols=37 Identities=46% Similarity=0.670 Sum_probs=33.4
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++||+||||||+||+++|.++|++ |.+|+++|+++.
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 3569999999999999999999975 999999999863
No 82
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.45 E-value=8.2e-07 Score=107.73 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=58.8
Q ss_pred CCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618 358 YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG 436 (1381)
Q Consensus 358 ~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG 436 (1381)
+..|-...++ ..+ ...+-++++.++|+++..+ ++ ++||++.|. +|++++++|+ .||-||| .-+-+++...|
T Consensus 162 ddaRLv~~~a--~~A--~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~-~VVNAaG-pW~d~i~~~~~ 233 (532)
T COG0578 162 DDARLVAANA--RDA--AEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRAR-AVVNAAG-PWVDEILEMAG 233 (532)
T ss_pred chHHHHHHHH--HHH--Hhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcC-EEEECCC-ccHHHHHHhhc
Confidence 4456555432 122 3568899999999999988 55 999999997 6899999995 6999888 56778999888
Q ss_pred CCCCCc
Q psy11618 437 IGPKAH 442 (1381)
Q Consensus 437 IGPkd~ 442 (1381)
-.++.+
T Consensus 234 ~~~~~~ 239 (532)
T COG0578 234 LEQSPH 239 (532)
T ss_pred ccCCCC
Confidence 766433
No 83
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.45 E-value=1.2e-06 Score=97.69 Aligned_cols=37 Identities=32% Similarity=0.320 Sum_probs=32.9
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+..+||++|||||+||+++|.++++ +|.+|+++|+.+
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~ 58 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKL 58 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 3456999999999999999999997 599999999864
No 84
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.39 E-value=2.7e-07 Score=109.04 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
.++|++|+.+++|+++..| ++|++||++.+++| +++++|+ .||=|+| .-.+.-++|.
T Consensus 101 ~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g-~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 101 AEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSG-RKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccc-cccccccccccccc-ccccccc-ccccccc---cccccccccc
Confidence 4679999999999999998 78899999988555 7899995 7999988 3467777774
No 85
>PRK06185 hypothetical protein; Provisional
Probab=98.37 E-value=3.9e-06 Score=97.09 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 439 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP 439 (1381)
+.+|.++..+++|+++..+ +++++||++.+.+| +++++|+ -||.|.|+ +|+ +=...|++.
T Consensus 120 ~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g-~~~i~a~-~vI~AdG~-~S~-vr~~~gi~~ 179 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDG-PGEIRAD-LVVGADGR-HSR-VRALAGLEV 179 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCC-cEEEEeC-EEEECCCC-chH-HHHHcCCCc
Confidence 4579999999999999887 56788898876344 3578884 78888885 453 445556654
No 86
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.36 E-value=4e-06 Score=98.82 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCCCeEEEcCcEEEEEEecC-CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 432 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL 432 (1381)
++.+.+++++++|++++.++ +++++||+..+ ++ .+++| |.||+|+|.++..+=+
T Consensus 134 ~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-~~--~~i~a-k~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 134 ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV-GT--HRITT-QALVLAAGGLGANRDW 188 (432)
T ss_pred HHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC-Cc--EEEEc-CEEEEcCCCcccCHHH
Confidence 46789999999999998863 57899998743 33 46777 5799999988764433
No 87
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.34 E-value=3.2e-06 Score=100.61 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 431 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL 431 (1381)
++.+.++.++++|+++..+ ++++++|. .+ +|++.+++|+ .||+|+|.+.+.-+
T Consensus 270 ~~~Gv~I~~g~~V~~v~~~-~~~V~~v~-~~-~g~~~~i~AD-~VVLAtGrf~s~GL 322 (422)
T PRK05329 270 ERLGGRIMPGDEVLGAEFE-GGRVTAVW-TR-NHGDIPLRAR-HFVLATGSFFSGGL 322 (422)
T ss_pred HhCCCEEEeCCEEEEEEEe-CCEEEEEE-ee-CCceEEEECC-EEEEeCCCcccCce
Confidence 4678999999999999887 55677765 33 6777788885 79999998766543
No 88
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.33 E-value=4.9e-06 Score=99.57 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+|++|||||.||+.+|.+++|+ |.+|+|+|+++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 7999999999999999999985 89999999974
No 89
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.33 E-value=4.2e-06 Score=96.87 Aligned_cols=38 Identities=34% Similarity=0.514 Sum_probs=34.2
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
...+||++|||||+||+++|..|++. |++|.|+|+.++
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 44579999999999999999999975 999999999974
No 90
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.33 E-value=4.3e-07 Score=109.69 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHH-cCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL-SGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLml-SGI 437 (1381)
.+.+.++.++++|+++..+ ++ ..+|+..+. +|++.+++|+ .||.|||+ .+.++... .|+
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~ 226 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRAR-ALVNAAGP-WVKQFLDDGLGL 226 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcC-EEEECCCc-cHHHHHhhccCC
Confidence 4668999999999999876 44 357877663 5767789995 79999996 46677653 354
No 91
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.32 E-value=2.8e-06 Score=94.78 Aligned_cols=36 Identities=36% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
..+||++|||||+||+++|.+++++ |.+|+++|+++
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~ 54 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSL 54 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 3579999999999999999999976 89999999995
No 92
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.32 E-value=3.3e-06 Score=101.81 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
.+.+.++..+++|+++..+ ++ ..+|+..+..|++.+++|+ .||.|||+ .++++..
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~ 220 (502)
T PRK13369 166 AERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRAR-ALVNAAGP-WVTDVIH 220 (502)
T ss_pred HHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEec-EEEECCCc-cHHHHHh
Confidence 4668999999999999876 33 4578777644777889994 79999995 4677765
No 93
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.27 E-value=3.8e-06 Score=96.15 Aligned_cols=38 Identities=37% Similarity=0.627 Sum_probs=34.3
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
..++|+||||+|-||.|+|+++||+ ++||+++|.-++.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhc-CceEEEEcccccc
Confidence 4679999999999999999999975 9999999987754
No 94
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.26 E-value=4.9e-06 Score=99.77 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=41.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 432 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL 432 (1381)
++.+.+|.++++|++|..+ +++++||+..+ |+ +++|+ .||.|||+-+|=+-|
T Consensus 240 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~--g~--~~~ad-~vV~a~~~~~~~~~L 291 (493)
T TIGR02730 240 EKHGGQIRYRARVTKIILE-NGKAVGVKLAD--GE--KIYAK-RIVSNATRWDTFGKL 291 (493)
T ss_pred HHCCCEEEeCCeeeEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCChHHHHHHh
Confidence 4668999999999999987 67899998754 54 45674 699999987776544
No 95
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.25 E-value=1.1e-05 Score=96.59 Aligned_cols=58 Identities=29% Similarity=0.446 Sum_probs=45.7
Q ss_pred cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618 368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
..+.++ +|||++++.++.+.++..|++..+.||.+.+++++..+++|+ .||||+|.++
T Consensus 139 L~~~v~-~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 139 LLKKVR-NRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred HHHHHh-cCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 334455 789999999999999999854456699998844456788884 7999999764
No 96
>PLN02985 squalene monooxygenase
Probab=98.24 E-value=9.8e-06 Score=98.52 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=33.5
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.+||+||||||.||+++|..|+++ |++|.++|+.+
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 45679999999999999999999975 99999999964
No 97
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.20 E-value=6.5e-06 Score=101.70 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=32.1
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+||+||||||+|||.+|.++|+. |.+|+++|.++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 469999999999999999999975 99999999864
No 98
>PRK07208 hypothetical protein; Provisional
Probab=98.19 E-value=2.2e-05 Score=93.29 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=40.8
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 432 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL 432 (1381)
+.+.+|.+|++|++|..++++.+++|.+.+.+|+.++++|+ .||.++.+-.+.+++
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~l 285 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAAL 285 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHhc
Confidence 45789999999999999854556666665435766678884 688877766666654
No 99
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.17 E-value=4.9e-06 Score=100.27 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=32.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.||+||||||.+|.++|.+||++ |++|.|+|+-..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~ 37 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDR 37 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCC
Confidence 469999999999999999999975 999999997653
No 100
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.17 E-value=3.2e-05 Score=88.28 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.++|+||||||-+|+.+|..|+++ |.+|.++|+++..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence 568999999999999999999987 7799999999743
No 101
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.16 E-value=9.8e-06 Score=88.70 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=45.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHc
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 435 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlS 435 (1381)
+++|+++.++++|+++.-+ +++++|++.+. +|+.+++.++ .||+|.|.-..+.++..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 4459999999999999744 36778887653 5666788884 799999977777777765
No 102
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.15 E-value=5.5e-06 Score=99.06 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=41.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
++.+.+|.+++.|++|..+ +++++||+..+ |+ +++|+ .||.|++.-++-+.|.
T Consensus 230 ~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~--g~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETE-GGRATAVHLAD--GE--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHCCCEEEECCeEEEEEee-CCEEEEEEECC--CC--EEECC-EEEECCcHHHHHHHhc
Confidence 3557899999999999987 57888997754 54 45675 6999999888887664
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.08 E-value=1.6e-05 Score=96.31 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=48.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHc
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS 435 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlS 435 (1381)
+++|++++++++|+++.-+ ++++++|++.+. +|+++++.++ .|++|.|..-.++++..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 4579999999999999754 578999999864 5666788885 799999998888887654
No 104
>KOG2404|consensus
Probab=98.07 E-value=1.8e-05 Score=90.55 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=41.4
Q ss_pred eEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618 379 LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 379 LtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
++|.+|++|++|+- ++++++||||+|.+|+++.+.++ .||+|.|.++
T Consensus 160 ~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~ 206 (477)
T KOG2404|consen 160 VKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGD-AVVLATGGFG 206 (477)
T ss_pred Hhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecC-ceEEecCCcC
Confidence 78999999999994 47899999999988888777774 7999999886
No 105
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.01 E-value=4.8e-05 Score=92.45 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=33.7
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.+++|++|||||++|+++|..|++. |.+|.|+|+.++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 5679999999999999999999975 999999999864
No 106
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.00 E-value=4e-05 Score=91.70 Aligned_cols=56 Identities=29% Similarity=0.278 Sum_probs=42.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL 432 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLL 432 (1381)
++.+.+|.+|+.|++|..+ +++++||...+. +|+..+++|+ .||.++.+-.+.+++
T Consensus 243 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 3468899999999999987 568999988762 2333467785 699988887776644
No 107
>PRK06126 hypothetical protein; Provisional
Probab=98.00 E-value=0.00012 Score=88.86 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
...++|++|||||++|+++|..|++. |++|.|+|+.+
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 34569999999999999999999975 99999999864
No 108
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.00 E-value=3.8e-05 Score=90.99 Aligned_cols=32 Identities=34% Similarity=0.699 Sum_probs=30.3
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
+||+||||||+||..+|.++++. |++|.++|+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 49999999999999999999975 999999998
No 109
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.98 E-value=5e-05 Score=92.13 Aligned_cols=58 Identities=21% Similarity=0.392 Sum_probs=45.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL 434 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLml 434 (1381)
+++|+++.++++|+++.-+ +++.++|++.+. +|+++++.++ .|++|.|..-..+++..
T Consensus 399 ~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 399 SLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred cCCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 3479999999999999754 568889998764 4666778885 79999998877777753
No 110
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.97 E-value=7.4e-06 Score=95.78 Aligned_cols=37 Identities=41% Similarity=0.700 Sum_probs=34.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.+||+||||||+||+++|.+++++ |.+|+|+|+|+.+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 479999999999999999999986 7999999999865
No 111
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.97 E-value=6.9e-06 Score=97.73 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=50.1
Q ss_pred CcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHc
Q psy11618 359 GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 435 (1381)
Q Consensus 359 G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlS 435 (1381)
|.|-..+ +.... ++.+.++..+++|+++..+ ++++++|... +|++.+++|+ +||+|+|+.-|..+....
T Consensus 262 G~RL~~a---L~~~~-~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~--~g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 262 GIRLEEA---LKHRF-EQLGGVMLPGDRVLRAEFE-GNRVTRIHTR--NHRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHH---HHHHH-HHCCCEEEECcEEEEEEee-CCeEEEEEec--CCccceEECC-EEEEccCCCcCHHHHhhc
Confidence 6665543 22222 3557899999999999987 6788887653 3445578886 699999999888886644
No 112
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.91 E-value=2e-05 Score=92.60 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=28.4
Q ss_pred EEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 166 IIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 166 IIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
||||||+||+.+|.+++++ |.+|+++|+++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcc
Confidence 6999999999999999975 899999999864
No 113
>PRK07233 hypothetical protein; Provisional
Probab=97.91 E-value=0.00012 Score=84.89 Aligned_cols=34 Identities=35% Similarity=0.438 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+++|||||.||.++|..|+++ |++|+|+|+.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCC
Confidence 589999999999999999986 8999999999754
No 114
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.90 E-value=0.00013 Score=86.19 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCe-EEEEecCcEEEEcCCc
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGE-TVRVTANKEVILTAGA 425 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr-~~tV~ArKEVILSAGA 425 (1381)
+.+.+|.+|+.|++|..+++++++||++.+.+|+ .++++|+ .||+|+.+
T Consensus 225 ~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 3467999999999998765678999999763332 2357774 69998875
No 115
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.87 E-value=2.5e-05 Score=81.45 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=36.3
Q ss_pred cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618 368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 436 (1381)
Q Consensus 368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG 436 (1381)
|++..+ ++.++++..+++|+++..++ ++ --|+.. +| ++++| +.||+|.|..+.|+....-|
T Consensus 87 yl~~~~-~~~~l~i~~~~~V~~v~~~~-~~-w~v~~~--~~--~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYA-ERFGLEIRFNTRVESVRRDG-DG-WTVTTR--DG--RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHH-HHTTGGEETS--EEEEEEET-TT-EEEEET--TS---EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHH-hhcCcccccCCEEEEEEEec-cE-EEEEEE--ec--ceeee-eeEEEeeeccCCCCcccccc
Confidence 565555 56677799999999999983 33 334443 35 46667 57999999999999887665
No 116
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.85 E-value=9.5e-05 Score=88.14 Aligned_cols=227 Identities=20% Similarity=0.201 Sum_probs=113.3
Q ss_pred cCCCCCCcccCCCCcccEEEECCCchHHHHHHHHhcc----CCCeEEEEeccCCCCCccccCCccccccCCcccCccccc
Q psy11618 148 IYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEV----SSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAE 223 (1381)
Q Consensus 148 ~~p~~~~~~~~~~~~YDYIIVGGGTAG~VLAsRLSEd----pg~sVLVLEAG~d~~~~~~iP~~~~~l~~s~~DW~Y~Te 223 (1381)
.+|.+..........||.+|||+|++|.-.|.|+|.+ +..+|+++|.|.+.+.. ..|....
T Consensus 4 ~~~~~~~~~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r-~~~~~~~-------------- 68 (486)
T COG2509 4 KLPIDHDQEALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR-LCPKDEK-------------- 68 (486)
T ss_pred cccCCCChHHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhh-hcccccc--------------
Confidence 3444434444556789999999999999999999976 47899999999865322 1222110
Q ss_pred ccccccccCCCceeecccccccCccccccceEEe-cCCc-cchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCC
Q psy11618 224 PSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQ-RGTS-YDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV 301 (1381)
Q Consensus 224 Pq~~a~~gl~~r~i~~pRGKvLGGSSsINgmvy~-RGs~-~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~ 301 (1381)
++ +.|..++ ++... .+.||+...-++... |+.. .|.++. ..+|+ +..++.+-.. +..-.
T Consensus 69 ~~-~~c~~~~--~~~I~--~G~GgaG~fs~g~lnl~P~~Gg~~~~~----~~d~~-----~~~~~~~~vd-----~~~vq 129 (486)
T COG2509 69 KL-EKCPKCD--PCPIV--IGFGGAGLFSDGILNLRPIRGGDVHER----TKDTD-----EFWELVNLVD-----ESNVQ 129 (486)
T ss_pred ch-hhcCCCC--CceeE--ecccccccccccceecccccccchhhh----hCChH-----HHHHHHhccc-----hhhee
Confidence 11 0122222 23333 357888877777766 2220 122211 11221 1111222111 00122
Q ss_pred CCCCCCccccCCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEE
Q psy11618 302 HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYV 381 (1381)
Q Consensus 302 HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtI 381 (1381)
||..|.=.- .+.. +... . ....++|.+...-..... +.|....+-.+. .-+.|+ +..+.++
T Consensus 130 fG~~g~~~~--~~~~--e~ik-d--~e~~aa~a~~eil~~~~r-HiGTD~l~~vvk------ni~~~l-----~~~G~ei 190 (486)
T COG2509 130 FGAPGAGTF--SDLT--EQIK-D--IEFRAAGAGEEILPIYQR-HIGTDILPKVVK------NIREYL-----ESLGGEI 190 (486)
T ss_pred cCCCcCccc--CCch--hhhh-H--HHHHHhCCCceeeecccc-ccCccchHHHHH------HHHHHH-----HhcCcEE
Confidence 443332111 1111 1222 1 222344443221111111 344322111110 111233 3345899
Q ss_pred EcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 382 LKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 382 LTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
..+++|+.|+++ ++.+.+|...+ |+ ++.+ ++||+|-|-=+.--.=|
T Consensus 191 ~f~t~VeDi~~~-~~~~~~v~~~~--g~--~i~~-~~vvlA~Grsg~dw~~~ 236 (486)
T COG2509 191 RFNTEVEDIEIE-DNEVLGVKLTK--GE--EIEA-DYVVLAPGRSGRDWFEM 236 (486)
T ss_pred EeeeEEEEEEec-CCceEEEEccC--Cc--EEec-CEEEEccCcchHHHHHH
Confidence 999999999997 45566776654 54 5777 58999999555444433
No 117
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.81 E-value=0.00033 Score=91.45 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 438 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG 438 (1381)
++.++++.+++.|+++.- ++++++|++.+.+|+.+++.++ .|+++.|..-..++....|..
T Consensus 362 ~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 467899999999999963 3578899887434566678885 799999999999999888854
No 118
>PLN02612 phytoene desaturase
Probab=97.79 E-value=0.00016 Score=89.01 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
..+..|++|||||.||.++|.+|++. |++|.++|+.+.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~ 127 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDV 127 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence 33457999999999999999999975 899999999754
No 119
>PRK08244 hypothetical protein; Provisional
Probab=97.78 E-value=0.00022 Score=85.66 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=32.2
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+||++|||||++|+++|..|++. |.+|.|+|+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999975 999999999864
No 120
>KOG4254|consensus
Probab=97.77 E-value=0.00011 Score=87.38 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=43.3
Q ss_pred chhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618 369 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 369 L~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
+.+.+ +|.+-+|.|+++|++|+.| +++|+||...| |+ ++++ |-||=-|+-.+|=
T Consensus 270 ia~~~-~~~GaeI~tka~Vq~Illd-~gka~GV~L~d--G~--ev~s-k~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 270 IAEGA-KRAGAEIFTKATVQSILLD-SGKAVGVRLAD--GT--EVRS-KIVVSNATPWDTF 323 (561)
T ss_pred HHHHH-Hhccceeeehhhhhheecc-CCeEEEEEecC--Cc--EEEe-eeeecCCchHHHH
Confidence 33445 7889999999999999999 58999999986 76 4555 5677778877776
No 121
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.77 E-value=0.00021 Score=86.18 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=33.2
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++.|++|||||+||.++|.++.++ |.+|.++|++++
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence 3458999999999999999999976 899999999964
No 122
>PRK11445 putative oxidoreductase; Provisional
Probab=97.76 E-value=0.00028 Score=81.33 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.||++|||||+||+++|..|+++ .+|+++|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence 48999999999999999999974 89999998863
No 123
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.76 E-value=0.00012 Score=88.26 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCCCeEEEcCcEEEEEEecC--CC--eEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~--g~--RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
++++.+|.+|++|++|..++ ++ +++||+..+.+| ..++.|+ .||+|+.+-++.+++-
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~aD-~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKAD-AYVAACDVPGIKRLLP 290 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEECC-EEEECCChHHHHhhCC
Confidence 35678999999999999863 22 489998854222 2346775 6999999888888763
No 124
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.76 E-value=0.00018 Score=88.19 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=31.9
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.||++|||||+||..+|.++++. +++|+++|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence 459999999999999999999975 89999999874
No 125
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.74 E-value=2.5e-05 Score=92.33 Aligned_cols=47 Identities=30% Similarity=0.548 Sum_probs=36.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+.+|++|. +++|+.|..+ +++++||... +|+ +++|+ -||+|+|++..
T Consensus 107 ~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~--~g~--~~~a~-~vVlaTGtfl~ 153 (392)
T PF01134_consen 107 SHPNLTII-QGEVTDLIVE-NGKVKGVVTK--DGE--EIEAD-AVVLATGTFLN 153 (392)
T ss_dssp TSTTEEEE-ES-EEEEEEC-TTEEEEEEET--TSE--EEEEC-EEEE-TTTGBT
T ss_pred cCCCeEEE-EcccceEEec-CCeEEEEEeC--CCC--EEecC-EEEEecccccC
Confidence 67999997 6799999998 7899999775 466 56674 69999999443
No 126
>PLN02487 zeta-carotene desaturase
Probab=97.71 E-value=0.00012 Score=90.30 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=41.4
Q ss_pred CCCCeEEEcCcEEEEEEecC--CC--eEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 432 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~--g~--RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL 432 (1381)
++.+.+|.+++.|++|+.++ ++ +++||++.+ +|+...+.| +.||++++.-...+++
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~a-D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVKA-DAYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEEC-CEEEECCCHHHHHHhC
Confidence 46788999999999999972 22 599999864 344445667 4699988877666655
No 127
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.69 E-value=0.0002 Score=88.80 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
||+||||||.||+.+|..+++. |.+|.++|.++
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999975 89999999974
No 128
>KOG0042|consensus
Probab=97.69 E-value=1.2e-05 Score=96.72 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=59.9
Q ss_pred CcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCC
Q psy11618 346 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG 424 (1381)
Q Consensus 346 ~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAG 424 (1381)
-.|..-....+.|..|...+-+.= + .|.+.+++-+.+|.+++-|+++++.|++++|+ .|++++++| |-||=|+|
T Consensus 210 L~Ga~VYyDGQ~nDaRmnl~vAlT--A--~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATG 284 (680)
T KOG0042|consen 210 LKGAMVYYDGQHNDARMNLAVALT--A--ARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRA-KVVVNATG 284 (680)
T ss_pred ceeEEEEecCCCchHHHHHHHHHH--H--HhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEE-EEEEeCCC
Confidence 345443333455667776654321 2 47889999999999999987779999999997 899999999 57999999
Q ss_pred chhhHH
Q psy11618 425 AIANAQ 430 (1381)
Q Consensus 425 AI~SPq 430 (1381)
-+.-.-
T Consensus 285 pfsDsI 290 (680)
T KOG0042|consen 285 PFSDSI 290 (680)
T ss_pred CccHHH
Confidence 775443
No 129
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.64 E-value=0.00028 Score=82.29 Aligned_cols=33 Identities=42% Similarity=0.591 Sum_probs=31.3
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++|++|||||+||+++|..|+++ |++|.++|+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 58999999999999999999976 8999999998
No 130
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.63 E-value=4.8e-05 Score=91.30 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=37.2
Q ss_pred chhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCC
Q psy11618 363 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG 424 (1381)
Q Consensus 363 SAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAG 424 (1381)
...+.+|...+ .+.+++++.+ +|+++..++++++++|+..+ |+ +++|+ -||=|+|
T Consensus 154 ~~fd~~L~~~A-~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~--g~--~i~ad-~~IDASG 208 (454)
T PF04820_consen 154 AKFDQFLRRHA-EERGVEVIEG-TVVDVELDEDGRITAVRLDD--GR--TIEAD-FFIDASG 208 (454)
T ss_dssp HHHHHHHHHHH-HHTT-EEEET--EEEEEE-TTSEEEEEEETT--SE--EEEES-EEEE-SG
T ss_pred HHHHHHHHHHH-hcCCCEEEeC-EEEEEEEcCCCCEEEEEECC--CC--EEEEe-EEEECCC
Confidence 34556776554 4569999987 58888888778899998765 54 67784 6777777
No 131
>PRK10262 thioredoxin reductase; Provisional
Probab=97.53 E-value=0.00051 Score=77.77 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=44.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec--CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~--~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
++.|+++.++++|+++.-+ ++++++|++.+. +|++.++.+ +.||+|.|..-...+.. +++
T Consensus 196 ~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~~-~~l 257 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIFE-GQL 257 (321)
T ss_pred cCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHhh-ccc
Confidence 4678999999999999644 456889988763 244567888 47999999776666553 454
No 132
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.51 E-value=0.00048 Score=78.16 Aligned_cols=65 Identities=25% Similarity=0.225 Sum_probs=43.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccC
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV 446 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~l 446 (1381)
..|++|..+++|+++... ++ ---+... +|.+ ...+ +.|+++.=|=+|+.+|--|.++-++.++..
T Consensus 115 AtdL~V~~~~rVt~v~~~-~~-~W~l~~~--~g~~-~~~~-d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~ 179 (331)
T COG3380 115 ATDLTVVLETRVTEVART-DN-DWTLHTD--DGTR-HTQF-DDVVLAIPAPQTATLLTTDADDLPAALRAA 179 (331)
T ss_pred hccchhhhhhhhhhheec-CC-eeEEEec--CCCc-cccc-ceEEEecCCCcchhhcCcccccchHHHHHh
Confidence 358999999999999875 22 1122222 3433 2334 479999999999999977655555555443
No 133
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.47 E-value=0.00012 Score=87.81 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=33.9
Q ss_pred CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
..+.+||++|||||+||+++|..||++ |.+|+++|+.+
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 455679999999999999999999975 99999999964
No 134
>KOG2415|consensus
Probab=97.46 E-value=0.0011 Score=78.49 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=53.3
Q ss_pred hhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----CCe-------EEEEecCcEEEEcCCchh--hHHH
Q psy11618 365 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KGE-------TVRVTANKEVILTAGAIA--NAQL 431 (1381)
Q Consensus 365 a~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~----~Gr-------~~tV~ArKEVILSAGAI~--SPqL 431 (1381)
...|+..-+ +.-+++|..+.-+..+++|+++.+.||...|. +|. -...+| |.-|.|-|.=+ |-|+
T Consensus 185 ~v~wLg~kA-Ee~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 185 LVRWLGEKA-EELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHHHHHHH-HhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchhHHHH
Confidence 334554434 55688889999999999987778889876552 332 234666 46777777554 5788
Q ss_pred HHHcCCCCCCccccCCCC
Q psy11618 432 LLLSGIGPKAHLDEVKIP 449 (1381)
Q Consensus 432 LmlSGIGPkd~Le~lGIp 449 (1381)
+..=+..-..|=+..||.
T Consensus 263 ~kkf~Lr~n~e~qtYglG 280 (621)
T KOG2415|consen 263 IKKFDLRENCEPQTYGLG 280 (621)
T ss_pred HHHhCcccCCCcceeccc
Confidence 877655433444444443
No 135
>PRK07538 hypothetical protein; Provisional
Probab=97.44 E-value=0.00074 Score=79.21 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
|++|||||+||+++|..|+++ |.+|.++|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 899999999999999999975 99999999975
No 136
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.43 E-value=0.0013 Score=79.04 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=44.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----------CCeEEEEecCcEEEEcCCchh-hHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------KGETVRVTANKEVILTAGAIA-NAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~----------~Gr~~tV~ArKEVILSAGAI~-SPqLLmlSGI 437 (1381)
.+.++++.+++++++|.-+ +++++||++.+. +|+++++.++ .||+|.|.-. +..++...|+
T Consensus 340 ~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence 3568999999999999754 678999987521 2556778885 7999999443 3456655554
No 137
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00019 Score=83.07 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=56.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvD 453 (1381)
+-+|.+|.+|++-+.|.=| |.+++|.+|+|+ +|+++++.-. -|.+--|-+-..++|.=| -++++.| +.++|
T Consensus 401 sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~-----vel~~rG-EIivD 472 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA-----VELNRRG-EIIVD 472 (520)
T ss_pred cCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch-----hhcCcCc-cEEEe
Confidence 5689999999999999876 789999999997 6888888774 588888988888888744 2455555 34444
No 138
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.40 E-value=0.0005 Score=83.17 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+||+||||||+||..+|.++++. |+||.++|++
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 59999999999999999999986 9999999973
No 139
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.39 E-value=0.00015 Score=84.61 Aligned_cols=35 Identities=49% Similarity=0.703 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHhc-cCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG~d~ 198 (1381)
|+||||||+||+.+|.++++ ++|.||++||+.++.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 99999999999999999933 369999999998754
No 140
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.39 E-value=0.0033 Score=75.40 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.+.+|++|||||+||..+|.++++. |++|.++|+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHK 167 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 3568999999999999999999975 899999998753
No 141
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.38 E-value=0.00018 Score=79.72 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=30.9
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+||++|||||+||+++|..|+++ |++|.++|+.++.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccc
Confidence 58999999999999999999976 9999999997654
No 142
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.37 E-value=0.00017 Score=78.61 Aligned_cols=34 Identities=41% Similarity=0.692 Sum_probs=31.7
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
||++|||||+||+++|.+|+++ |.+|.|+|+++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999975 999999999864
No 143
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.34 E-value=0.0011 Score=80.38 Aligned_cols=60 Identities=27% Similarity=0.358 Sum_probs=49.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
.+.+.++.++++|++|..+ +++++||++.|. +|++.+++|+ .||.|||+ .+.++....|+
T Consensus 139 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 139 QEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence 4668999999999999886 678999999764 5667789995 69999995 57888887775
No 144
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.31 E-value=0.00021 Score=83.22 Aligned_cols=32 Identities=22% Similarity=0.618 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
||+||||||+||+++|.+|++. |.+|+++|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 8999999999999999999975 9999999997
No 145
>KOG2665|consensus
Probab=97.30 E-value=0.0013 Score=75.85 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=35.3
Q ss_pred CCCCcccEEEECCCchHHHHHHHHh-ccCCCeEEEEeccCC
Q psy11618 158 KSGDCFDIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGGD 197 (1381)
Q Consensus 158 ~~~~~YDYIIVGGGTAG~VLAsRLS-Edpg~sVLVLEAG~d 197 (1381)
...++||.+|||||..|++.|++|+ +.|+.+|.++|+-.+
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 3456799999999999999999999 559999999999764
No 146
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.28 E-value=0.00019 Score=79.22 Aligned_cols=37 Identities=38% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+..+||++|||||+||.++|..||++ |.||+++|++.
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred hhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence 34579999999999999999999987 99999999973
No 147
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.26 E-value=0.00066 Score=81.82 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=30.2
Q ss_pred EEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
++|||||.||..+|.||.++ |+.+|.++|++++
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r 36 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 69999999999999999976 6699999999964
No 148
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.25 E-value=0.003 Score=74.66 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
++.+.++.++++|+++.- +++.++|+. +|+ ++.++ .||+|+|..-+..++..+|+
T Consensus 202 ~~~gI~v~~~~~v~~i~~--~~~~~~v~~---~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 202 RENGVELHLNEFVKSLIG--EDKVEGVVT---DKG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHCCCEEEcCCEEEEEec--CCcEEEEEe---CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 466899999999999953 344555543 233 36674 79999998766678888886
No 149
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.24 E-value=0.0003 Score=81.23 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=32.8
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++||+||||||+||+++|..|+++ |++|.++|+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 4569999999999999999999975 99999999975
No 150
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.22 E-value=0.00031 Score=82.23 Aligned_cols=33 Identities=42% Similarity=0.663 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~ 196 (1381)
|+||||||.||+.+|.+|+++ +|++|+++|+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999974 699999999986
No 151
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.00057 Score=83.22 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=30.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
++||+||||||-|||-+|..-|+ -|.+++++--..|
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcCCC
Confidence 35999999999999999988775 4889998876654
No 152
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.17 E-value=0.00033 Score=82.99 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=32.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
++||+||||||+||..+|.++++. |++|+++|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence 369999999999999999999986 899999999753
No 153
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0014 Score=75.52 Aligned_cols=59 Identities=27% Similarity=0.436 Sum_probs=44.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
+++|.++.+|+++++|.=+ + +.+|+..+.+|++...... -|.++-|..-.-.+++..|+
T Consensus 190 ~~~~i~~~~~~~i~ei~G~-~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGD-D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred hcCCeEEEeCCceeEEecC-c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 5669999999999999755 3 8899998743666666664 58888887766677776654
No 154
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.15 E-value=0.00042 Score=79.74 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
++|++|||||+||+++|..|++. |.+|.|+|+++.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 58999999999999999999975 999999999975
No 155
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.13 E-value=0.00042 Score=82.36 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++||++|||||+||..+|.++++. |++|.++|+++
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence 4569999999999999999999986 89999999864
No 156
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.11 E-value=0.0026 Score=75.58 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
..++.++||||||.||..+|.+|.+ ++.+|.++|.-+.
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCC
Confidence 3455799999999999999999974 4789999998764
No 157
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.11 E-value=0.0005 Score=79.37 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++||+||||||++|+++|..|++. |.+|.++|+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 4569999999999999999999975 99999999975
No 158
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.09 E-value=0.00038 Score=80.38 Aligned_cols=35 Identities=34% Similarity=0.619 Sum_probs=31.2
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.|||+|||||-+|+|+|+.+|+. |++|+++|+-+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~H 35 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNH 35 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc-CCEEEEEecccc
Confidence 48999999999999999977764 999999999764
No 159
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.09 E-value=0.0066 Score=79.85 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------cCC--------eEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-------SKG--------ETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-------~~G--------r~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
.+.++++.+++.+++|.-+++++++||++.+ .+| +++++.++ .||+|.|-...+.++.
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 692 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTKANPIITQ 692 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcCCChhhhh
Confidence 4679999999999999876567899998752 123 34568885 7999999766655443
No 160
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.08 E-value=0.00042 Score=82.87 Aligned_cols=34 Identities=32% Similarity=0.562 Sum_probs=31.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++||++|||||+||..+|.++++. |+||+++|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc
Confidence 469999999999999999999986 9999999985
No 161
>PLN02463 lycopene beta cyclase
Probab=97.07 E-value=0.00054 Score=82.51 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=33.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
...+||++|||||+||+.+|.+++++ |.+|.++|+.+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 44569999999999999999999975 99999999864
No 162
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.06 E-value=0.0019 Score=83.72 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.4
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+...+.|||||+||..+|..|++. |++|.+.|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 456899999999999999999975 99999999864
No 163
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.04 E-value=0.00054 Score=81.17 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=32.1
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++||++|||||+||..+|.++++. |++|.++|+++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 369999999999999999999975 89999999975
No 164
>PRK09126 hypothetical protein; Provisional
Probab=97.03 E-value=0.00053 Score=79.13 Aligned_cols=35 Identities=43% Similarity=0.499 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+||++|||||+||+++|..|+++ |.+|.|+|+++.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 58999999999999999999976 999999999975
No 165
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.02 E-value=0.00068 Score=78.60 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
..++|++|||||+||+++|..|+++ |.+|.++|+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence 3568999999999999999999975 999999999863
No 166
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.01 E-value=0.0063 Score=71.44 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=39.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
++.++++.++++|+++.-+ + .+.|+.. +|+ ++.+ +.||+|+|..-...+...+|+
T Consensus 197 ~~~GV~i~~~~~V~~i~~~--~-~~~v~l~--~g~--~i~a-D~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVDG--E-KVELTLQ--SGE--TLQA-DVVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHCCCEEEeCCeeEEEEcC--C-EEEEEEC--CCC--EEEC-CEEEECCCCChhhHHHHhcCC
Confidence 4668999999999998542 2 2234432 465 4666 479999998877778777776
No 167
>PRK06116 glutathione reductase; Validated
Probab=97.00 E-value=0.00062 Score=80.92 Aligned_cols=34 Identities=38% Similarity=0.568 Sum_probs=31.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.+||++|||||+||..+|.++++. |++|+++|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 469999999999999999999986 9999999986
No 168
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.99 E-value=0.00064 Score=80.03 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=29.9
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+|++|||||+||+++|..+++. |.+|+++|+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~ 32 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERK 32 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecC
Confidence 6999999999999999999975 9999999985
No 169
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.98 E-value=0.0049 Score=77.28 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.3
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+..|++|||||+||..+|..|++. |++|.++|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 456999999999999999999975 899999998764
No 170
>KOG3851|consensus
Probab=96.98 E-value=0.0065 Score=70.44 Aligned_cols=243 Identities=16% Similarity=0.209 Sum_probs=125.9
Q ss_pred CCCCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC--CCccccCC-ccc----------cccCCcccCcccc-
Q psy11618 158 KSGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT--PIHSRIPG-MSS----------VLSLSEFDHAYLA- 222 (1381)
Q Consensus 158 ~~~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~--~~~~~iP~-~~~----------~l~~s~~DW~Y~T- 222 (1381)
...+++.+.|||||++|+.+|++.++. +.-+|-++|--.+. .+.-..-+ ... +...+...|--+.
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv 114 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKV 114 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHH
Confidence 345689999999999999999999976 66799999976543 11111000 000 1111223343211
Q ss_pred ---cccccccccCCCceeecccccccCcc-ccccceEEecCCccchHHHhh----cCC----CCCChhhHHHHHHHhccc
Q psy11618 223 ---EPSQFAGLGVRNARIKITAGKGLGGS-SAVQNILYQRGTSYDYENFAK----LGY----NGWGYDETLKYFVKSEDY 290 (1381)
Q Consensus 223 ---ePq~~a~~gl~~r~i~~pRGKvLGGS-SsINgmvy~RGs~~DFD~Wa~----lGn----~GWswedLlPYFkKsE~~ 290 (1381)
+|+++ ....| ||- =+-.+|+-.-|-.-|||.... ... +.+|-.-++..|++.+++
T Consensus 115 ~~f~P~~N---------~v~t~----gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~f 181 (446)
T KOG3851|consen 115 KEFNPDKN---------TVVTR----GGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNF 181 (446)
T ss_pred HhcCCCcC---------eEEcc----CCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhc
Confidence 22221 11111 121 133456666677777876542 222 356777899999999988
Q ss_pred ccCCcccCCCCCCCCCCccccCCCCCCCchHHHHHHHH-HHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcc
Q psy11618 291 RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS-AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYL 369 (1381)
Q Consensus 291 ~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA-~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL 369 (1381)
.... .-+.-.++|++..-.|.. +. .+.|+ +++.|.+.+.+. -. .++.. .--|.++.+. | +
T Consensus 182 k~GN----AIfTfPntpiKCAGAPQK----i~-yise~y~Rk~gvRd~a~i--iy-~Tsl~-----~iFgVk~Y~~-A-L 242 (446)
T KOG3851|consen 182 KKGN----AIFTFPNTPIKCAGAPQK----IM-YISESYFRKRGVRDNANI--IY-NTSLP-----TIFGVKHYAD-A-L 242 (446)
T ss_pred cCCc----eEEecCCCccccCCCchh----hh-hhhHHHHHHhCccccccE--EE-ecCcc-----ceecHHHHHH-H-H
Confidence 5321 222234677776543322 21 12222 456776533221 00 01111 1134444432 2 3
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 370 TPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 370 ~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
.... +++|++|-+.-.-.+|..+ +++|+ -|-.|+.|++.+++= +..=..-...||..+..|..
T Consensus 243 ~k~~-~~rni~vn~krnLiEV~~~-~~~Av-Fe~L~kPG~t~ei~y--slLHv~Ppms~pe~l~~s~~ 305 (446)
T KOG3851|consen 243 EKVI-QERNITVNYKRNLIEVRTN-DRKAV-FENLDKPGVTEEIEY--SLLHVTPPMSTPEVLANSDL 305 (446)
T ss_pred HHHH-HhcceEeeeccceEEEecc-chhhH-HHhcCCCCceeEEee--eeeeccCCCCChhhhhcCcc
Confidence 3344 6889999988888888776 34442 122222355444332 22223335667777777753
No 171
>PRK06370 mercuric reductase; Validated
Probab=96.98 E-value=0.00071 Score=80.79 Aligned_cols=36 Identities=42% Similarity=0.604 Sum_probs=32.5
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++||+||||||+||..+|.++++. |++|.++|+++
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 3569999999999999999999986 99999999863
No 172
>PTZ00058 glutathione reductase; Provisional
Probab=96.97 E-value=0.00078 Score=83.26 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=32.6
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
...+||+||||||+||..+|.|+++. |+||+++|++
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~ 80 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD 80 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc
Confidence 34679999999999999999999976 8999999985
No 173
>PRK06996 hypothetical protein; Provisional
Probab=96.97 E-value=0.00073 Score=78.99 Aligned_cols=40 Identities=40% Similarity=0.517 Sum_probs=34.3
Q ss_pred cCCCCcccEEEECCCchHHHHHHHHhccC---CCeEEEEeccC
Q psy11618 157 VKSGDCFDIIIVGASAAGCVLANRLSEVS---SLKVLLIEAGG 196 (1381)
Q Consensus 157 ~~~~~~YDYIIVGGGTAG~VLAsRLSEdp---g~sVLVLEAG~ 196 (1381)
.+..++||++|||||++|+++|..|++.. |.+|.++|+.+
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 35567899999999999999999999753 36899999975
No 174
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.97 E-value=0.00067 Score=80.77 Aligned_cols=36 Identities=33% Similarity=0.550 Sum_probs=32.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
..+||+||||||+||..+|.++++. |++|+++|+++
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 3569999999999999999999986 99999999864
No 175
>PRK08013 oxidoreductase; Provisional
Probab=96.96 E-value=0.00077 Score=78.82 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+||++|||||+||+++|..|++. |.+|.++|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 58999999999999999999975 999999999875
No 176
>PRK07045 putative monooxygenase; Reviewed
Probab=96.96 E-value=0.00078 Score=78.03 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
++++|++|||||+||+++|.-|+++ |.+|.|+|+.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcc
Confidence 3568999999999999999999975 9999999999743
No 177
>PLN02529 lysine-specific histone demethylase 1
Probab=96.95 E-value=0.0052 Score=78.33 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=33.0
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++.|++|||||.||..+|.+|++. |++|.++|+.+.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCcc
Confidence 4568999999999999999999975 999999999754
No 178
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.95 E-value=0.00089 Score=60.99 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=27.7
Q ss_pred EECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 167 IVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 167 IVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
|||||.||.++|.+|+++ +++|.|+|+.++.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCccc
Confidence 899999999999999986 9999999999754
No 179
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.94 E-value=0.008 Score=74.53 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=45.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.++|++++.++.|++++.|+++|++||...+. +|+.+.++|+ -||+|+|.++.
T Consensus 137 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 137 LKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred hccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 46799999999999999865689999998653 7888889995 89999999885
No 180
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.94 E-value=0.00075 Score=79.84 Aligned_cols=35 Identities=46% Similarity=0.694 Sum_probs=31.4
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.||++|||||.||+++|.+|++. |.+|+|+|+++.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~ 35 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNH 35 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 37999999999999999999975 899999999643
No 181
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.92 E-value=0.00071 Score=80.59 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=31.0
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+||++|||||+||..+|.++++. |+||+++|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 59999999999999999999986 9999999985
No 182
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.91 E-value=0.00077 Score=77.85 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
|+||||||+||+.+|.+++++ |.||+++|++++
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 899999999999999999965 999999998853
No 183
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.91 E-value=0.00083 Score=80.51 Aligned_cols=34 Identities=35% Similarity=0.659 Sum_probs=31.8
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++||+||||||+||..+|.++++. |++|+++|++
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence 579999999999999999999985 9999999986
No 184
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.90 E-value=0.00086 Score=77.56 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.4
Q ss_pred cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
.||++|||||+||+++|..|++. +|.+|.++|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 48999999999999999999986 3699999999863
No 185
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.88 E-value=0.00084 Score=78.20 Aligned_cols=34 Identities=41% Similarity=0.608 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+||++|||||+||+++|..|++. |.+|.|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 58999999999999999999975 99999999986
No 186
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.88 E-value=0.0028 Score=77.99 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=26.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||+||.++|+.+-|+ |.+|.+.|+.++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCC
Confidence 479999999999999999986 999999998864
No 187
>KOG2820|consensus
Probab=96.88 E-value=0.0077 Score=70.32 Aligned_cols=38 Identities=34% Similarity=0.297 Sum_probs=33.8
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.+..|+||||+|.=||..|.+|+++ +.|++++|+=+-
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~ 41 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPL 41 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCC
Confidence 34568999999999999999999987 799999999764
No 188
>PRK14694 putative mercuric reductase; Provisional
Probab=96.87 E-value=0.00094 Score=80.07 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=33.7
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.++||+||||||+||.++|.++++. |+||.++|++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 45689999999999999999999986 89999999874
No 189
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.87 E-value=0.0094 Score=69.38 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=41.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 438 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG 438 (1381)
++.|+++.++++|+++.-+ +++ ..|+.. +|+ ++.++ .||+|+|.-..+++...+|+.
T Consensus 194 ~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~--~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKT-DSG-IRATLD--SGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HhCCCEEEECCeEEEEEcc-CCE-EEEEEc--CCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 4678999999999999765 222 335443 454 46674 799999988777888888864
No 190
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.85 E-value=0.0015 Score=79.72 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=39.7
Q ss_pred cccccCCCCCCccc--CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 144 YRSVIYPPDMTPYV--KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 144 ~~~~~~p~~~~~~~--~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
|+...|+-++.... ....++|++|||||++|+++|..|++. |.+|.++|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 3 YQTPKFPYRPHADQDADDPARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CcccCccCCCCccccCCCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 34445555543332 223579999999999999999999975 99999999986
No 191
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.85 E-value=0.001 Score=79.91 Aligned_cols=32 Identities=31% Similarity=0.591 Sum_probs=30.3
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
+||++|||||+||..+|.++++. |+||+++|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~ 34 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEG 34 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 59999999999999999999985 999999996
No 192
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.00089 Score=74.28 Aligned_cols=36 Identities=36% Similarity=0.387 Sum_probs=32.4
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+..+-|+|||||||||.++|++|||+ +.||.++|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ 62 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERK 62 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEee
Confidence 34567999999999999999999987 9999999975
No 193
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.82 E-value=0.0011 Score=75.69 Aligned_cols=34 Identities=44% Similarity=0.579 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
|++|||||+||+++|..|+++ |.+|+|+|+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence 899999999999999999976 9999999999754
No 194
>KOG1399|consensus
Probab=96.80 E-value=0.0038 Score=75.59 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=45.9
Q ss_pred hcchhhhcCCCCe--EEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618 367 AYLTPIAGKRTNL--YVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 438 (1381)
Q Consensus 367 AYL~Pa~~~R~NL--tILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG 438 (1381)
.|+...+ ++-++ +|..+++|.|+...++ ..-.|.+.+..++...-.. +-|++|.|-...|++=+.+|.|
T Consensus 94 ~YL~~yA-~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~~~~if-d~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 94 EYLRDYA-KHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQIEEEIF-DAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred HHHHHHH-HhcChhhheEecccEEEEeeccC-CceeEEEecCCcceeEEEe-eEEEEcccCcCCCCCCcCCCCc
Confidence 5776665 55555 7888998888876521 3556777663332122222 3599999999559998888876
No 195
>PLN02697 lycopene epsilon cyclase
Probab=96.79 E-value=0.0014 Score=80.71 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=32.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.+.+||++|||||+||+.+|.++++. |.+|+++|++
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 34579999999999999999999975 9999999864
No 196
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.79 E-value=0.0012 Score=79.59 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=31.9
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+||+||||||+||..+|.|+++. |++|.++|+++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 469999999999999999999975 99999999863
No 197
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.75 E-value=0.0013 Score=78.37 Aligned_cols=34 Identities=44% Similarity=0.737 Sum_probs=31.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++||+||||||+||..+|.++++. |++|+++|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 459999999999999999999975 9999999984
No 198
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.75 E-value=0.0014 Score=75.43 Aligned_cols=34 Identities=44% Similarity=0.636 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHhccCC-CeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~d~ 198 (1381)
|++|||||+||+++|..|++. | .+|.++|+.+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCcc
Confidence 899999999999999999976 8 999999999653
No 199
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.74 E-value=0.0013 Score=78.64 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
||+||||||+||..+|.++++. |++|.++|+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999975 99999999853
No 200
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0061 Score=70.98 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
++.+-.++++-+|.|..+. ++|+++|..+ +++...++| +++|+|+|++-|-
T Consensus 269 ~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~tr--n~~diP~~a-~~~VLAsGsffsk 319 (421)
T COG3075 269 EQLGGLWMPGDEVKKATCK-GGRVTEIYTR--NHADIPLRA-DFYVLASGSFFSK 319 (421)
T ss_pred HHcCceEecCCceeeeeee-CCeEEEEEec--ccccCCCCh-hHeeeeccccccc
Confidence 3567789999999999997 7899999766 477778999 5899999988764
No 201
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.73 E-value=0.016 Score=69.40 Aligned_cols=52 Identities=35% Similarity=0.457 Sum_probs=38.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG 436 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG 436 (1381)
++.|++|.+|+.|++|.-| ||.+.+ |++ ++.++ -||=|||.=.+|-.=.+||
T Consensus 220 ~~~GV~v~l~~~Vt~v~~~------~v~~~~--g~~-~I~~~-tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 220 EKLGVEVLLGTPVTEVTPD------GVTLKD--GEE-EIPAD-TVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHCCCEEEcCCceEEECCC------cEEEcc--CCe-eEecC-EEEEcCCCcCChhhhhcCh
Confidence 5779999999999999544 565554 333 67784 7999999877775544444
No 202
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.72 E-value=0.0013 Score=76.36 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=31.4
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+||++|||||+||+++|..|++. |.+|.++|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 58999999999999999999975 99999999764
No 203
>KOG0685|consensus
Probab=96.72 E-value=0.0046 Score=74.60 Aligned_cols=37 Identities=38% Similarity=0.505 Sum_probs=32.9
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+.-++|||||.||..+|.||-|+....|+++||.++-
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 3478999999999999999998877899999999753
No 204
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.71 E-value=0.0015 Score=77.62 Aligned_cols=35 Identities=43% Similarity=0.696 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHHHHhcc---CCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEd---pg~sVLVLEAG~d 197 (1381)
||++|||||++|+++|..|++. .|.+|.|+|+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 7999999999999999999973 4899999999653
No 205
>PRK13748 putative mercuric reductase; Provisional
Probab=96.70 E-value=0.0014 Score=79.95 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.8
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++||+||||||+||..+|.++++. |.+|+++|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 469999999999999999999985 8999999986
No 206
>PRK07190 hypothetical protein; Provisional
Probab=96.69 E-value=0.0017 Score=78.84 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=33.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.+++|++|||||++|+++|..|++. |.+|.++|+.+.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcc
Confidence 4568999999999999999999975 9999999998743
No 207
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.66 E-value=0.0017 Score=77.84 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=31.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++||++|||||+||..+|.++++. |++|.++|++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 359999999999999999999975 9999999986
No 208
>PTZ00367 squalene epoxidase; Provisional
Probab=96.64 E-value=0.0017 Score=80.53 Aligned_cols=36 Identities=47% Similarity=0.576 Sum_probs=32.7
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.+||+||||||.||+++|..|+++ |++|.++|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 3579999999999999999999975 99999999864
No 209
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.63 E-value=0.0075 Score=69.45 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHHHhc--cCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSE--dpg~sVLVLEAG~d~ 198 (1381)
.++|||||.||..+|+|+.+ +++.+|.++|+.+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 37999999999999999964 357899999988653
No 210
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.59 E-value=0.012 Score=73.95 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=32.8
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+..+++|||||+||..+|.+|++. |++|.+.|+++..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence 357899999999999999999975 8999999998753
No 211
>PRK09897 hypothetical protein; Provisional
Probab=96.57 E-value=0.017 Score=71.50 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
.+++|||||++|..+|.+|.++ ++.+|.|+|.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 4799999999999999999864 4568999999754
No 212
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.56 E-value=0.0025 Score=74.57 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=30.9
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.+|++|||||+||+++|..|++. |.+|.|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 58999999999999999999975 9999999996
No 213
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.56 E-value=0.0021 Score=74.15 Aligned_cols=35 Identities=49% Similarity=0.589 Sum_probs=31.4
Q ss_pred CcccEEEECCCchHHHHHHHHhcc--CCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG 195 (1381)
+++|++|||||+||+++|..|++. +|.+|.|+|+-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 468999999999999999999864 39999999986
No 214
>KOG2311|consensus
Probab=96.53 E-value=0.0043 Score=74.66 Aligned_cols=52 Identities=31% Similarity=0.446 Sum_probs=39.6
Q ss_pred CCCCeEEEcCcEEEEEEec-C--CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIIN-D--QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 431 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd-~--g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL 431 (1381)
+.+|++|+.++.++=++-| + ..+++||...| |. .|+|+ .||+..|++-+.||
T Consensus 136 st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~d--gt--~v~a~-~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 136 STPNLEIREGAVADLIVEDPDDGHCVVSGVVLVD--GT--VVYAE-SVILTTGTFLRGQI 190 (679)
T ss_pred cCCcchhhhhhhhheeeccCCCCceEEEEEEEec--Cc--Eeccc-eEEEeeccceeeEE
Confidence 5679999988877766665 2 23688998876 54 67784 79999999977766
No 215
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.52 E-value=0.0026 Score=76.64 Aligned_cols=33 Identities=42% Similarity=0.674 Sum_probs=30.9
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
++||+||||||+||..+|.++++. |+||+++|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 469999999999999999999975 899999998
No 216
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.52 E-value=0.0022 Score=74.49 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=31.3
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+|++|||||++|+++|..|+++ |++|.++|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 37999999999999999999975 99999999875
No 217
>PLN02507 glutathione reductase
Probab=96.50 E-value=0.0025 Score=77.64 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
..+||+||||||+||..+|.|+++. |+||.++|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 4579999999999999999999986 999999995
No 218
>PRK06184 hypothetical protein; Provisional
Probab=96.47 E-value=0.0029 Score=76.43 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=32.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|++|||||+||.++|..|++. |.+|.|+|+-+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 358999999999999999999975 999999999754
No 219
>PRK06847 hypothetical protein; Provisional
Probab=96.46 E-value=0.0031 Score=72.38 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+..|++|||||+||+++|..|++. |.+|.|+|+.++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 457999999999999999999975 999999998753
No 220
>PLN02546 glutathione reductase
Probab=96.46 E-value=0.0029 Score=78.32 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
..+||+||||||+||..+|.+++|. |+||.++|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 3469999999999999999999986 999999995
No 221
>KOG2852|consensus
Probab=96.46 E-value=0.0014 Score=74.96 Aligned_cols=63 Identities=16% Similarity=0.321 Sum_probs=45.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 370 TPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 370 ~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
..++ +|.|+++..+. |..+. |+.+|..+|......+..+...+ ..||+|||. -|+|++..-+|
T Consensus 155 sea~-k~~~V~lv~Gk-v~ev~-dEk~r~n~v~~ae~~~ti~~~d~-~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 155 SEAE-KRGGVKLVFGK-VKEVS-DEKHRINSVPKAEAEDTIIKADV-HKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHH-hhcCeEEEEee-eEEee-cccccccccchhhhcCceEEeee-eEEEEecCC-Cchhhcccccc
Confidence 3455 78999999886 44554 44678888877653344556666 469999995 68999988776
No 222
>PRK07588 hypothetical protein; Provisional
Probab=96.40 E-value=0.003 Score=73.32 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
|++|||||+||+++|..|+++ |.+|.++|+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 899999999999999999975 99999999985
No 223
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.40 E-value=0.007 Score=70.67 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=27.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.||.|+||.|+++..+|..+.|.++.+++.+|+-++
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 4699999999999999999999987789999997653
No 224
>KOG2853|consensus
Probab=96.39 E-value=0.022 Score=66.73 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=31.8
Q ss_pred CcccEEEECCCchHHHHHHHHhc---cCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSE---VSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSE---dpg~sVLVLEAG~d 197 (1381)
.+.|++|||||-.|+..|.-|.| +.+.+|+|+|+-.-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46799999999999999998876 35689999999864
No 225
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.39 E-value=0.003 Score=76.57 Aligned_cols=36 Identities=39% Similarity=0.650 Sum_probs=32.4
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
..+||+||||||+||-++|.|.++. |.||.++|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 3579999999999999999999986 66699999995
No 226
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.38 E-value=0.0034 Score=76.34 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=31.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++||+||||||+||.++|.|+++..|+||.++|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999997438999999974
No 227
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.37 E-value=0.003 Score=73.73 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=32.2
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
++|++|||||+||+++|..|++. |++|.|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence 57999999999999999999975 999999999873
No 228
>PRK06753 hypothetical protein; Provisional
Probab=96.37 E-value=0.0032 Score=72.31 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
|++|||||+||+++|..|+++ |++|.++|+.++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999975 999999999975
No 229
>PRK06834 hypothetical protein; Provisional
Probab=96.36 E-value=0.0032 Score=76.41 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=32.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|+||||||++|+++|..|++. |.+|.|+|+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 358999999999999999999975 999999998763
No 230
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.34 E-value=0.0031 Score=76.72 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.||+||||||+||..+|.++++. |+||+++|++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 59999999999999999999975 9999999974
No 231
>KOG0029|consensus
Probab=96.28 E-value=0.0044 Score=75.95 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=34.8
Q ss_pred CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
...++.++||||||.||.++|+.|.+. |.+|+|+||-+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdR 49 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDR 49 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCC
Confidence 355678999999999999999999976 999999999764
No 232
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.24 E-value=0.0068 Score=76.10 Aligned_cols=39 Identities=31% Similarity=0.472 Sum_probs=34.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.+++|++|||||+||+++|..|++.+|.+|.++|+-+..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 457999999999999999999997348999999987643
No 233
>PLN02576 protoporphyrinogen oxidase
Probab=96.24 E-value=0.0041 Score=74.56 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=32.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|++|||||.||.++|.+|+++.|.+|.|+||.+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 4579999999999999999999743789999999864
No 234
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.24 E-value=0.0032 Score=75.99 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+++||+||+|.|-.-|++|+-||.+ |+||+.+|+.+..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yY 39 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYY 39 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCc
Confidence 4689999999999999999999976 9999999999754
No 235
>PRK07236 hypothetical protein; Provisional
Probab=96.23 E-value=0.0048 Score=71.75 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++.|++|||||+||+++|.-|+++ |.+|.|+|+.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 3458999999999999999999985 99999999875
No 236
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.22 E-value=0.026 Score=73.34 Aligned_cols=58 Identities=9% Similarity=0.259 Sum_probs=43.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
++.++++.++++|++|.-+++++..+|++. +|+ ++.+ ..||+|+|.--...++..+|+
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--dG~--~i~~-D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEGVEARKTMRFA--DGS--ELEV-DFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHCCCEEEcCCeEEEEEecCCCceEEEEEC--CCC--EEEc-CEEEECCCcccCchHHhhcCc
Confidence 467899999999999975433455666664 465 4667 479999998877788777886
No 237
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.20 E-value=0.0042 Score=72.81 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
+++|||||.||.++|.+|+++ ++++|.|+||.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~ 36 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR 36 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 689999999999999999986 3489999999754
No 238
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.17 E-value=0.005 Score=72.90 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHHHHhcc-C--CCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEV-S--SLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEd-p--g~sVLVLEAG~d 197 (1381)
.|++|||||.||+++|.+|+++ + |++|.|+||.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r 40 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR 40 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence 6999999999999999999975 2 899999999764
No 239
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.12 E-value=0.0047 Score=77.95 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=31.4
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++||+||||||+||-.+|.+.+|. |.||.++|.+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 479999999999999999999985 9999999965
No 240
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.11 E-value=0.005 Score=72.19 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=32.0
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
++|++|||||+||+++|..|++. |++|.++|+-+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 47999999999999999999975 999999999863
No 241
>PRK14727 putative mercuric reductase; Provisional
Probab=96.10 E-value=0.0056 Score=73.89 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.4
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
..+||+||||||+||..+|.|+++. |.+|.++|+++
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 3469999999999999999999975 89999999873
No 242
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.03 E-value=0.0069 Score=70.14 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=31.5
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|++|||||+||+++|..|++. |.+|.|+|+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 47999999999999999999975 99999999975
No 243
>PLN02268 probable polyamine oxidase
Probab=96.02 E-value=0.0061 Score=71.95 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
|+||||||.||.++|++|.++ |++|.|+||.+..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRI 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 789999999999999999974 8999999998753
No 244
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.02 E-value=0.0066 Score=63.13 Aligned_cols=31 Identities=39% Similarity=0.613 Sum_probs=27.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
|++|||||+||..+|.++++ ++.+|.++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEecc
Confidence 79999999999999999994 69999999554
No 245
>KOG3855|consensus
Probab=95.93 E-value=0.0098 Score=70.91 Aligned_cols=39 Identities=36% Similarity=0.592 Sum_probs=34.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccC---CCeEEEEeccCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVS---SLKVLLIEAGGD 197 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdp---g~sVLVLEAG~d 197 (1381)
+.+.||++|||||++|.++|+.+..+| .+||+++|+|..
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 345799999999999999999998775 579999999964
No 246
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.79 E-value=0.12 Score=63.26 Aligned_cols=65 Identities=18% Similarity=0.367 Sum_probs=47.9
Q ss_pred cchhhhcchhhhc--CCCCeEEEcCcEEEEEEec---CCCeEEEEEEEecCCeE--EEEecCcEEEEcCCchh
Q psy11618 362 FSAADAYLTPIAG--KRTNLYVLKRSKVTKVIIN---DQNVATGVEYVNSKGET--VRVTANKEVILTAGAIA 427 (1381)
Q Consensus 362 sSAa~AYL~Pa~~--~R~NLtILTnA~VtRIlfd---~g~RAtGVE~vd~~Gr~--~tV~ArKEVILSAGAI~ 427 (1381)
.+-.++...|..+ +.++++...|++|+.|.++ ++++|++.++.+ +|++ ..+..+.-|++.-|++-
T Consensus 203 YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~-~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 203 YNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ-DGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred cccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc-CCCeeEEEeCCCCEEEEECCccc
Confidence 3344444556431 5679999999999999997 345788999886 6654 45667788999999764
No 247
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.65 E-value=0.052 Score=69.95 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=42.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
++.++++.++++|++|.-+ ++..+|++.| |+ ++.++ -||+|+|.--...+...+|+
T Consensus 193 ~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d--G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 193 EQKGLTFLLEKDTVEIVGA--TKADRIRFKD--GS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHcCCEEEeCCceEEEEcC--CceEEEEECC--CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 4679999999999998643 4677887754 65 46664 79999997766677766776
No 248
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.63 E-value=0.18 Score=59.76 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=31.1
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
..-++-|||+|.+|..+|.-||. .++|.+-||+..-
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl 42 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL 42 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence 34578999999999999999996 5899999999753
No 249
>PRK05868 hypothetical protein; Validated
Probab=95.58 E-value=0.012 Score=68.72 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-|++|||||+||+++|..|+++ |++|.|+|+.++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 3899999999999999999975 999999999754
No 250
>PRK07846 mycothione reductase; Reviewed
Probab=95.47 E-value=0.012 Score=70.66 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=27.7
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+||+||||||+||-.+|.|. .|+||.++|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence 49999999999999888773 389999999864
No 251
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.43 E-value=0.092 Score=61.21 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=32.3
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 430 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPq 430 (1381)
.+ +.++.+++.|++|..+ +++ .+|+ ..+|+ +++| +.||+|+|+- |++
T Consensus 146 ~~-G~~i~~~~~V~~i~~~-~~~-~~v~--t~~g~--~~~a-~~vV~a~G~~-~~~ 192 (381)
T TIGR03197 146 GI-RLTLHFNTEITSLERD-GEG-WQLL--DANGE--VIAA-SVVVLANGAQ-AGQ 192 (381)
T ss_pred CC-CcEEEeCCEEEEEEEc-CCe-EEEE--eCCCC--EEEc-CEEEEcCCcc-ccc
Confidence 45 8999999999999876 443 3343 32454 3567 4799999954 443
No 252
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.42 E-value=0.013 Score=70.27 Aligned_cols=31 Identities=23% Similarity=0.626 Sum_probs=27.0
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+||+||||||+||..+|.|. .|+||.++|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCC
Confidence 59999999999998887664 39999999985
No 253
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=95.37 E-value=0.013 Score=69.94 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhcc-----CCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEV-----SSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEd-----pg~sVLVLEAG~d 197 (1381)
++||||||.||.++|++|+++ ++.+|.|+||.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r 41 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY 41 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence 689999999999999999975 2479999999764
No 254
>PLN02676 polyamine oxidase
Probab=95.36 E-value=0.016 Score=70.74 Aligned_cols=38 Identities=34% Similarity=0.492 Sum_probs=32.9
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCC-eEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~d~ 198 (1381)
...+|+||||||.+|..+|.+|+++ |. +|+|+||++..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~ 62 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRI 62 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCC
Confidence 3468999999999999999999986 66 69999998653
No 255
>PLN02568 polyamine oxidase
Probab=95.35 E-value=0.018 Score=71.30 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHHHHhccC----CCeEEEEeccCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVS----SLKVLLIEAGGDT 198 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdp----g~sVLVLEAG~d~ 198 (1381)
+..|+||||||.||.++|++|++.. +.+|.|+||+...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 3479999999999999999999752 4899999998754
No 256
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.30 E-value=0.016 Score=69.98 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=31.2
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-|++|||||.|||.+|..||+. |.+|.++|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 4999999999999999999975 999999998864
No 257
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.27 E-value=0.022 Score=74.96 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.+.+|++|||||+||..+|.+|++. |++|.|+|+++.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEK 571 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence 3568999999999999999999975 899999998764
No 258
>KOG2844|consensus
Probab=95.16 E-value=0.077 Score=66.50 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=33.4
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
++-+..|..||-|++|..++ ++..|||-.. | .+++. .||=|||.=.
T Consensus 198 ~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~--G---~iet~-~~VNaaGvWA 243 (856)
T KOG2844|consen 198 SALGALVIENCPVTGLHVET-DKFGGVETPH--G---SIETE-CVVNAAGVWA 243 (856)
T ss_pred HhcCcEEEecCCcceEEeec-CCccceeccC--c---ceecc-eEEechhHHH
Confidence 57789999999999999973 3344888754 4 35665 4788888433
No 259
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.07 E-value=0.02 Score=68.70 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++||||||+||..+|.++++. |++|.++|+++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc
Confidence 689999999999999999974 99999999974
No 260
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.06 E-value=0.11 Score=64.71 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
.+.|+++++++.|++++.+ ++|++||...+. +|+..+++| |-||+|+|.++.
T Consensus 130 ~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 130 LKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 4678999999999999987 679999998653 688888999 589999999875
No 261
>KOG2960|consensus
Probab=95.02 E-value=0.005 Score=68.01 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCcccEEEECCCchHHHHHHHHhc-cCCCeEEEEecc
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAG 195 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG 195 (1381)
-.+-|+||||+|+||..+|...++ +|+.+|.+||+.
T Consensus 74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred hhccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 346799999999999999999994 599999999986
No 262
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.89 E-value=0.029 Score=71.08 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
..+..|++|||||.||.++|..|++. |.+|.|+|+.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 45679999999999999999999985 99999999865
No 263
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.86 E-value=0.062 Score=60.35 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=36.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 431 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL 431 (1381)
.+.|.++..+++|+++..+ ++++++|+.. +| +++|+ .||+|+|+ .|+++
T Consensus 148 ~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~--~g---~~~a~-~vV~a~G~-~~~~l 196 (337)
T TIGR02352 148 EKLGVEIIEHTEVQHIEIR-GEKVTAIVTP--SG---DVQAD-QVVLAAGA-WAGEL 196 (337)
T ss_pred HHcCCEEEccceEEEEEee-CCEEEEEEcC--CC---EEECC-EEEEcCCh-hhhhc
Confidence 4568999999999999876 6678888642 34 57785 69999996 44443
No 264
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=94.85 E-value=0.03 Score=67.62 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCCCcccEEEECCCchHHHHHHHHhccCCCe-EEEEeccCC
Q psy11618 158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGD 197 (1381)
Q Consensus 158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~s-VLVLEAG~d 197 (1381)
...+.+|++|||||.||..+|.+|.+. +.+ +.++|+.++
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~ 43 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDD 43 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCC
Confidence 345679999999999999999999976 555 999999974
No 265
>KOG0405|consensus
Probab=94.81 E-value=0.036 Score=65.20 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=32.3
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
..++|||.|||||++|...|+|=++ -|.||.++|++.
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f 53 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPF 53 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHh-cCceEEEEecCC
Confidence 4468999999999999998888776 499999999984
No 266
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.75 E-value=0.032 Score=65.67 Aligned_cols=34 Identities=38% Similarity=0.492 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||.||+++|..|+++++.+|.|+|+.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 5799999999999999999864469999999753
No 267
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.74 E-value=0.031 Score=65.54 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+++|||||+||+++|.-|++ +|++|.++|+.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 78999999999999999997 499999999865
No 268
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=94.73 E-value=0.034 Score=67.18 Aligned_cols=37 Identities=35% Similarity=0.449 Sum_probs=33.4
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++.|+||||+|-||+++|++|+++ |++|.++||-+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCC
Confidence 4568999999999999999999976 999999999764
No 269
>PRK12831 putative oxidoreductase; Provisional
Probab=94.68 E-value=0.039 Score=66.83 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=32.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.+..|++|||||+||..+|.++++. |++|.++|+.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHE 174 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 3457999999999999999999975 999999998653
No 270
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.53 E-value=0.033 Score=67.46 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=30.4
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
|++|||||.|||.+|..|++. |.+|.++|..++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 789999999999999999975 999999998764
No 271
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.14 E-value=0.056 Score=64.95 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=32.9
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.+..|++|||||+||..+|.++++. |++|.++|+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~ 174 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDK 174 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 4457999999999999999999975 899999999864
No 272
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.83 E-value=0.058 Score=65.16 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
|+||||||+||..+|.++++. |++|.++|+++
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 899999999999999999975 89999999864
No 273
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.67 E-value=0.071 Score=68.26 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.7
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+..|++|||||+||..+|..|++. |++|.++|+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 457999999999999999999975 99999999854
No 274
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.57 E-value=0.1 Score=48.14 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=30.6
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 199 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~ 199 (1381)
++|||||..|+-.|..+++. +++|.++|+++...
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence 58999999999999999975 89999999998643
No 275
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.50 E-value=0.098 Score=64.37 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHHHHhc-cCCCeEEEEeccCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDT 198 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG~d~ 198 (1381)
+..++.|||||+||..+|.+|++ +++++|.++|+-+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 34689999999999999999985 368999999999754
No 276
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.30 E-value=0.077 Score=68.22 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=30.7
Q ss_pred cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
+++|||||+||+++|..|++. +|++|.|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999975 5899999998764
No 277
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.09 E-value=0.11 Score=65.68 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=32.4
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+..|++|||||+||..+|.++++. |++|.++|+.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 457999999999999999999975 899999998865
No 278
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.02 E-value=0.098 Score=69.03 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.3
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.-|++|||||+||..+|..|++. |++|.++|+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccc
Confidence 456999999999999999999976 899999998764
No 279
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.93 E-value=0.13 Score=59.80 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=32.0
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
..|++|||||.||+.+|.++++. +++|.++|+++..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence 35899999999999999999975 8999999998653
No 280
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.75 E-value=0.11 Score=68.28 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=32.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+..+++|||||+||.++|..|++. |++|.|+|+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCC
Confidence 356899999999999999999975 999999999754
No 281
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=92.62 E-value=0.12 Score=66.88 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=32.4
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+..|++|||||.||..+|.+|++. |++|.|+|+...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r 272 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRAR 272 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecccc
Confidence 468999999999999999999974 999999999754
No 282
>PLN03000 amine oxidase
Probab=92.60 E-value=0.089 Score=68.43 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=33.0
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+..|++|||||.+|+.+|.+|++. |++|.|+|+.++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcC
Confidence 468999999999999999999975 8999999998653
No 283
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=0.11 Score=63.61 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=30.0
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
++|+|||-||..+|..|+|+ |.+|.+.|||+.
T Consensus 3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~ 34 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDR 34 (485)
T ss_pred EEEEcccHHHHHHHHHHHhC-CCceEEEeccCc
Confidence 68999999999999999986 999999999975
No 284
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.24 E-value=1.8 Score=52.41 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=36.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.++.+|.|.||-|++-..+|+-++|..+.+++.+|+-|+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 3467999999999999999999999878999999999863
No 285
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=92.20 E-value=0.2 Score=61.27 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=32.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+..+++|||||+||..+|..|++. |.+|.++|+++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 346999999999999999999975 899999999864
No 286
>KOG2614|consensus
Probab=91.86 E-value=0.19 Score=60.46 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=30.5
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+-++||||||-+|++.|.-+++. |++|.|+|+-.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecc
Confidence 45899999999999999999975 99999999943
No 287
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.76 E-value=1.5 Score=50.36 Aligned_cols=60 Identities=25% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 438 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG 438 (1381)
+..+.++.++..+.+|.-+ ++++++.+....+++ ++++ +-|+++.|.--...+....|.|
T Consensus 189 ~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~--~~~~-d~~~~~~g~~p~~~l~~~~~~~ 248 (415)
T COG0446 189 EKYGVELLLGTKVVGVEGK-GNTLVVERVVGIDGE--EIKA-DLVIIGPGERPNVVLANDALPG 248 (415)
T ss_pred HHCCcEEEeCCceEEEEcc-cCcceeeEEEEeCCc--EEEe-eEEEEeecccccHHHHhhCccc
Confidence 3456999999999999876 444444321111233 4555 3678877766666666666534
No 288
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.69 E-value=0.17 Score=60.69 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~ 198 (1381)
.++|||||.||..+|+++.+. ++.+|.++|++++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 689999999999999999864 67899999999753
No 289
>KOG4716|consensus
Probab=91.68 E-value=0.21 Score=58.92 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=32.7
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
....||-||||||++|...|.|=|.. |++|.+++.=..
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~P 53 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKP 53 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeeccc
Confidence 44579999999999999999998864 999999998643
No 290
>PLN02976 amine oxidase
Probab=91.63 E-value=0.17 Score=68.45 Aligned_cols=36 Identities=36% Similarity=0.472 Sum_probs=32.0
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
..+|++|||||+||+.+|.+|++. |.+|.++|+++.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~ 727 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSR 727 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccC
Confidence 458999999999999999999975 899999999643
No 291
>PTZ00188 adrenodoxin reductase; Provisional
Probab=91.22 E-value=0.21 Score=61.60 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=32.0
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
..-+.|||||+||+.+|.+++...+++|-+.|+-+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 3468999999999999999875568999999999754
No 292
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.19 E-value=0.29 Score=50.83 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=26.4
Q ss_pred EEECCCchHHHHHHHHhccC----CCeEEEEeccC
Q psy11618 166 IIVGASAAGCVLANRLSEVS----SLKVLLIEAGG 196 (1381)
Q Consensus 166 IIVGGGTAG~VLAsRLSEdp----g~sVLVLEAG~ 196 (1381)
.|||||++|..+|.+|.+.. ..+|.+.|..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 48999999999999999763 56899999843
No 293
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.03 E-value=0.34 Score=58.97 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=32.3
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+..|++|||||+||..+|..+++. |.+|.++|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 457999999999999999999975 899999999864
No 294
>PRK13984 putative oxidoreductase; Provisional
Probab=90.24 E-value=0.33 Score=60.55 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=33.3
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.+..+++|||||+||..+|..|++. |++|.++|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 3467999999999999999999975 8999999998643
No 295
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.38 E-value=1.9 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=27.0
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-.++|||||.+|.-+|.+|+++ +++|-++=+.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 5799999999999999999987 68999887765
No 296
>KOG2403|consensus
Probab=89.21 E-value=0.39 Score=59.57 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=27.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEe
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIE 193 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLE 193 (1381)
..+||.+|||+|.||.-.|-.++|. +.+|.++-
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~it 85 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVIT 85 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhc-CceEEEEe
Confidence 3469999999999999999999986 66666653
No 297
>KOG1335|consensus
Probab=87.98 E-value=0.73 Score=55.38 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=44.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCc
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpV 450 (1381)
+.++++-.++++|++..-++++ -+-|++.+. +|++.+.+++ -..+|.|- .| ..+|.| +++.||..
T Consensus 263 ~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~D-vlLVsiGR--rP---~t~GLg----le~iGi~~ 328 (506)
T KOG1335|consen 263 QKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECD-VLLVSIGR--RP---FTEGLG----LEKIGIEL 328 (506)
T ss_pred HhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEee-EEEEEccC--cc---cccCCC----hhhccccc
Confidence 4578999999999999887333 456666665 6777777774 67788882 23 345655 55666654
No 298
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=87.81 E-value=0.53 Score=58.44 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=30.9
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.-+++|||||+||..+|..+++. |.+|.++|+.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~ 171 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPK 171 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 45899999999999999999975 889999998754
No 299
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.12 E-value=0.43 Score=57.68 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=52.6
Q ss_pred CCCccchhhhheecCCCCeEEEEEEeeeceeecCCCCCCChhhhhhhhccccccCCCCCCcccCCCCcccEEEECCCchH
Q psy11618 95 GPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAG 174 (1381)
Q Consensus 95 g~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~wp~p~l~~~~~~~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTAG 174 (1381)
+-+.+||.+.++ =|++..|+++=- ..+-+...|....-.+.|...-..+.-.+. ...+.+.-+++|||||+.|
T Consensus 95 ~~~i~YD~LVva---lGs~~~~fgi~G-~~E~a~~lks~edA~~ir~~l~~~fe~a~~---~~~~~~~lti~IvGgG~TG 167 (405)
T COG1252 95 LGEISYDYLVVA---LGSETNYFGIPG-AAEYAFGLKTLEDALRLRRHLLEAFEKASQ---EEDDRALLTIVIVGGGPTG 167 (405)
T ss_pred CccccccEEEEe---cCCcCCcCCCCC-HHHhCCCCCCHHHHHHHHHHHHHHHHHhhc---cccccceeEEEEECCChhH
Confidence 455788887654 366666644311 123344444444322222211111110100 0001234689999999999
Q ss_pred HHHHHHHhccC------------CCeEEEEeccCC
Q psy11618 175 CVLANRLSEVS------------SLKVLLIEAGGD 197 (1381)
Q Consensus 175 ~VLAsRLSEdp------------g~sVLVLEAG~d 197 (1381)
-=+|.+|+|.. ..+|.++|||+.
T Consensus 168 VElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ 202 (405)
T COG1252 168 VELAGELAERLHRLLKKFRVDPSELRVILVEAGPR 202 (405)
T ss_pred HHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch
Confidence 99998888731 139999999985
No 300
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=86.89 E-value=0.66 Score=57.02 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+=++.|||||.||.++|..||+. |.+|.++|.-|.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence 34789999999999999999976 999999999874
No 301
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.80 E-value=0.66 Score=51.60 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=30.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+++|||+|.-|..+|.+|+++ |++|.++|.-++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~~ 35 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEER 35 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHHH
Confidence 589999999999999999986 8999999987643
No 302
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=86.54 E-value=2.1 Score=53.44 Aligned_cols=135 Identities=29% Similarity=0.459 Sum_probs=68.0
Q ss_pred cCCCCCcch--hhHHHHHHHHHHHhhCCCCcccceeecccCCCCcceeeeccccccccCCCc-----ccchhhccccCCC
Q psy11618 24 PFGPYLPEY--NELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDF-----WPYIKYIHEKFGP 96 (1381)
Q Consensus 24 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~ 96 (1381)
|+.+-.|+| ++-+++|++-.-|+||-. +..+| |+.=++-+|++|+ |.+. +++=|.
T Consensus 72 p~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~---~~I~f------------nt~V~~v~~~~d~~~~~~W~V~---~~~~g~ 133 (531)
T PF00743_consen 72 PFPEDYPDFPSHSEVLEYLESYAEHFGLR---KHIRF------------NTEVVSVERDPDFSATGKWEVT---TENDGK 133 (531)
T ss_dssp -HCCCCSSSEBHHHHHHHHHHHHHHTTGG---GGEET------------SEEEEEEEEETTTT-ETEEEEE---ETTTTE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhCCc---ceEEE------------ccEEeEeeeccccCCCceEEEE---eecCCe
Confidence 555555665 678899999888888753 12222 2222233445554 4432 222221
Q ss_pred CccchhhhheecCCCCeEEEEEEeeeceeecCCCCC---CChhhhhhhhccccccCCCCCCcccCCCCcccEEEECCCch
Q psy11618 97 NFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWP---YPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAA 173 (1381)
Q Consensus 97 ~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~wp---~p~l~~~~~~~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTA 173 (1381)
+ + .-+|-.|+=.+.+-..-.|| +|-+++-+....++.+|... ... .+ =.++|||+|.+
T Consensus 134 ~-~-------------~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~-~~f--~g--KrVlVVG~g~S 194 (531)
T PF00743_consen 134 E-E-------------TEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDP-EPF--KG--KRVLVVGGGNS 194 (531)
T ss_dssp E-E-------------EEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TG-GGG--TT--SEEEEESSSHH
T ss_pred E-E-------------EEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcCh-hhc--CC--CEEEEEeCCHh
Confidence 1 0 11222233333222222233 45444434444566666432 111 12 27999999999
Q ss_pred HHHHHHHHhccCCCeEEEEeccC
Q psy11618 174 GCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 174 G~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
|+=+|.++|+. ..+|.+.=+.+
T Consensus 195 g~DIa~el~~~-a~~v~~s~R~~ 216 (531)
T PF00743_consen 195 GADIAVELSRV-AKKVYLSTRRG 216 (531)
T ss_dssp HHHHHHHHTTT-SCCEEEECC--
T ss_pred HHHHHHHHHHh-cCCeEEEEecc
Confidence 99999999986 55676655544
No 303
>KOG1276|consensus
Probab=84.64 E-value=1.1 Score=54.60 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 198 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~ 198 (1381)
.-|+.|||||.+|..+|..||+. |+.+|.+-||+++-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 35899999999999999999976 77889999999864
No 304
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.83 E-value=1 Score=45.69 Aligned_cols=31 Identities=35% Similarity=0.589 Sum_probs=28.3
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|+|+|+.|+..|++|++ ++.+|.++-+++
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence 4799999999999999998 599999998886
No 305
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=82.44 E-value=1.4 Score=52.83 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.||+||+|.|-.-|+++++||-+ |++|+.|++-+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~ 40 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDY 40 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCc
Confidence 379999999999999999999976 999999999864
No 306
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=82.33 E-value=1.4 Score=50.51 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=32.7
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.-+.+|||||.+|+-+|..+++. |++|.++|+.+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~ 171 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRL 171 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEccccc
Confidence 36899999999999999999976 8999999999864
No 307
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.17 E-value=1.9 Score=53.11 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-+|..+++. +++|.++|+++.
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~ 386 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADE 386 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCc
Confidence 799999999999999999965 789999998864
No 308
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=81.31 E-value=5.3 Score=44.22 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-+++|||||.+|.-+|..+++. +++|.++++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~ 175 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDK 175 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcc
Confidence 3789999999999999999975 889999999864
No 309
>KOG1439|consensus
Probab=80.41 E-value=1.1 Score=54.10 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=33.5
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++||+||+|.|-.=|+++.+||.+ |++|+.+++-+.
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~y 38 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDY 38 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCC
Confidence 3569999999999999999999976 899999999864
No 310
>KOG2755|consensus
Probab=80.37 E-value=1.3 Score=51.28 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=28.9
Q ss_pred EEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~ 196 (1381)
|||||||.||-..|..|+.- |+.+|+++-|.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 89999999999999999964 788999998875
No 311
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.94 E-value=3.3 Score=51.10 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=30.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
+++|||||..|+-+|..|++. +++|.++|+++..
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccc
Confidence 899999999999999999975 8899999999753
No 312
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=79.05 E-value=2.3 Score=52.30 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
-.+-||||||||..+|.+||++ |++|.+-|+=+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCC
Confidence 6899999999999999999976 9999998887643
No 313
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.17 E-value=2.4 Score=50.63 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-.++|||||.+|+-+|..+++. +.+|.++|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcc
Confidence 4789999999999999999865 889999999874
No 314
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=77.24 E-value=30 Score=42.78 Aligned_cols=33 Identities=15% Similarity=0.405 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||+|.+|+=+|..+++. +++|.++.+++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence 799999999999999999976 789999999864
No 315
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=76.40 E-value=2.6 Score=48.69 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.|+|+|+-|+..|.+|++. |.+|.++.+|+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 589999999999999999975 88999999975
No 316
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=76.40 E-value=2.9 Score=49.50 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-+|..+++. |.+|.++|+++.
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~ 178 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAAT 178 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence 689999999999999999975 889999999875
No 317
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=76.40 E-value=3.4 Score=47.70 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.|||+|+-|+..|.+|+++ |++|.++.+++
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 589999999999999999985 89999998864
No 318
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=75.83 E-value=5.5 Score=48.65 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=44.2
Q ss_pred eeecCCCCCCChhhhh------hhhccccccCCCCCCcccCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 124 YEKCPDFWPYPRLEKE------RYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 124 ~~~~~~~wp~p~l~~~------~~~~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.+.|++.+--|...+- +-...++.+|+.. . +-+-=+++|||+|++|+.+|..++|. +.+|-+.=+.+.
T Consensus 136 vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~---~--~~~GKrV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~ 209 (443)
T COG2072 136 VVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNP---E--DLRGKRVLVIGAGASAVDIAPELAEV-GASVTLSQRSPP 209 (443)
T ss_pred EEEeecCCCCCCCCCCCCccCCCceEEchhcCCCc---c--ccCCCeEEEECCCccHHHHHHHHHhc-CCeeEEEecCCC
Confidence 3455555554543321 2223455555543 1 22234889999999999999999987 588888877764
No 319
>PRK07846 mycothione reductase; Reviewed
Probab=75.33 E-value=5.6 Score=48.39 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-+++|||||..|+-+|..+++. |.+|.++|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCc
Confidence 3789999999999999999964 899999999863
No 320
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=75.32 E-value=3.1 Score=50.47 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||.+|+-+|..+++. +.+|.++|+++.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~ 214 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAADR 214 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCc
Confidence 789999999999999999975 889999999863
No 321
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=75.28 E-value=6.4 Score=47.47 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEE
Q psy11618 325 FETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYV 404 (1381)
Q Consensus 325 f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~v 404 (1381)
..+=+++.|++...+- .|.- .|.+ ++-++-.++... .. ++.|++|.++++|++| + +++ .+|+..
T Consensus 59 ~~~fF~~~Gi~~~~e~------~grv-fP~S---~~A~sVv~~L~~-~l-~~~gV~i~~~~~V~~i--~-~~~-~~v~~~ 122 (376)
T TIGR03862 59 LQDWARGLGIETFVGS------SGRV-FPVE---MKAAPLLRAWLK-RL-AEQGVQFHTRHRWIGW--Q-GGT-LRFETP 122 (376)
T ss_pred HHHHHHHCCCceEECC------CCEE-CCCC---CCHHHHHHHHHH-HH-HHCCCEEEeCCEEEEE--e-CCc-EEEEEC
Confidence 3455578999654221 2322 2222 111233334443 33 5789999999999999 4 232 455443
Q ss_pred ecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618 405 NSKGETVRVTANKEVILTAGAIANAQL 431 (1381)
Q Consensus 405 d~~Gr~~tV~ArKEVILSAGAI~SPqL 431 (1381)
+ ++ .+++|+ .||+|+|..-.|+.
T Consensus 123 ~--~~-~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 123 D--GQ-STIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred C--Cc-eEEecC-EEEEcCCCcccccc
Confidence 2 22 247785 69999999988864
No 322
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=74.88 E-value=3.4 Score=48.47 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-+|..|++. +.+|.++|+++.
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~ 175 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAAS 175 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCc
Confidence 689999999999999999975 899999999875
No 323
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=74.86 E-value=4 Score=39.69 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=27.6
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
|||+|.|..|-.+|.+|.+ .+.+|.++|.-++
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence 6999999999999999998 4779999998753
No 324
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=74.72 E-value=3.2 Score=49.86 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-+++|||||.+|+-+|..+++. +.+|.++|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3799999999999999999976 88999999875
No 325
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.32 E-value=3 Score=51.48 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=28.3
Q ss_pred cccEEEECCCchHHHHHHHHhccC--CCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVS--SLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdp--g~sVLVLEAG~d 197 (1381)
++|++|||||++|..+|..|.+.+ +.+|-++|.-++
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 378999999999999999998653 334888886653
No 326
>KOG1336|consensus
Probab=74.15 E-value=7.5 Score=48.10 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=51.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 454 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDL 454 (1381)
+++..++.+++.++++..+++++++-|...| |+ ++.|+ -||++-|+--.-+.+.. |+ +.++.| -.
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--g~--~l~ad-lvv~GiG~~p~t~~~~~-g~----~~~~~G-----~i 330 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--GK--TLEAD-LVVVGIGIKPNTSFLEK-GI----LLDSKG-----GI 330 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEecc--CC--EeccC-eEEEeeccccccccccc-cc----eecccC-----CE
Confidence 4678999999999999988668898998876 55 67775 68888887655555554 43 455555 22
Q ss_pred ccchhcccc
Q psy11618 455 RVGENLKLN 463 (1381)
Q Consensus 455 PVGrNLQDH 463 (1381)
+|=+++|..
T Consensus 331 ~V~~~f~t~ 339 (478)
T KOG1336|consen 331 KVDEFFQTS 339 (478)
T ss_pred eehhceeec
Confidence 344555543
No 327
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=74.05 E-value=3.6 Score=49.40 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||.+|+-+|..+++ .+.+|.++|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence 68999999999999999997 4889999999864
No 328
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=72.85 E-value=3.6 Score=43.10 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=26.7
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|+|||..|.++|.-+|++ +++|.+-.+-+
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 57999999999999999987 78888876643
No 329
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=72.76 E-value=4 Score=49.46 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+++|||||.+|+-+|..+++. +.+|.++|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 789999999999999999875 88999999885
No 330
>KOG4405|consensus
Probab=72.56 E-value=4.2 Score=49.52 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=34.2
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
..++||+||||.|-.-+++|+.-|+ +|.||+=++..+..
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yY 43 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYY 43 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCcccc
Confidence 4568999999999999999999996 59999999987643
No 331
>KOG1800|consensus
Probab=71.10 E-value=4.1 Score=49.26 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT 198 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~ 198 (1381)
..+.-++|||||+||--.|++|=++ ++.+|-+.|.-|-+
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 3445889999999999999988764 78999999998754
No 332
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=70.63 E-value=4.6 Score=48.82 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=29.6
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-+++|||||.+|+-.|..+++. +.+|.++|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3789999999999999999975 88999999885
No 333
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.41 E-value=4.6 Score=49.27 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-+|..+++. |.+|.++|+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCC
Confidence 789999999999999999975 889999999864
No 334
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=70.20 E-value=2.7 Score=55.29 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
..+|||||..|.-+|..|++. |.+|.++|.++.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPM 179 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecccc
Confidence 579999999999999999975 889999999875
No 335
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=69.89 E-value=5.1 Score=45.22 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.5
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
+.|+|+|..|+.+|.+|++. |++|.++.+
T Consensus 3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r 31 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA-GHDVTLVAR 31 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEEC
Confidence 68999999999999999975 889999886
No 336
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=69.77 E-value=4.8 Score=45.61 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=26.8
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
+.|+|+|..|+..|.+|+++ |++|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 68999999999999999986 889999987
No 337
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=69.47 E-value=5.1 Score=47.77 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=28.7
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||||.+|+-+|..+++. +.+|.++|+++
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 170 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSE 170 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc
Confidence 789999999999999999964 88999999875
No 338
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=68.46 E-value=11 Score=47.24 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-+|..+++. +++|.++|+++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCc
Confidence 789999999999999999865 899999999874
No 339
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=68.09 E-value=4.4 Score=48.29 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-+.|||||-||+-+|.+++++ |.+|-+-|--|.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 468999999999999999986 999999998874
No 340
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=68.07 E-value=5.6 Score=48.31 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++. +++|.++|+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 789999999999999999975 899999999864
No 341
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=67.94 E-value=5.4 Score=47.92 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHHHHhcc-------------CCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEV-------------SSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEd-------------pg~sVLVLEAG~d 197 (1381)
.++|||||.+|.-.|..+++. ++.+|.++|+|+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 789999999999999999862 3678999998853
No 342
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=67.34 E-value=6.2 Score=47.66 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||||..|+-+|..+++. |.+|.++|+++
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 205 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALP 205 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 789999999999999999975 88999999985
No 343
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=67.26 E-value=5.9 Score=47.84 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-+|..+++. |.+|.++|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 689999999999999999975 889999999864
No 344
>PRK14727 putative mercuric reductase; Provisional
Probab=67.22 E-value=8.8 Score=46.97 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=28.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.++|||||..|+-+|..+++. |.+|.++|++
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 689999999999999999965 8899999864
No 345
>KOG0399|consensus
Probab=67.16 E-value=7.1 Score=52.34 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
.-+-|||+|+||..+|..|-+. |++|.|=|+-...
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRV 1820 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCc
Confidence 4678999999999999999975 9999999998654
No 346
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=66.79 E-value=6.3 Score=47.82 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||||..|+-+|..+++. +.+|.++|+++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~ 205 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLD 205 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 789999999999999999975 88999999764
No 347
>PRK10262 thioredoxin reductase; Provisional
Probab=66.71 E-value=12 Score=42.86 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-+|..+++. +++|.++|+++.
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~ 180 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDG 180 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCc
Confidence 789999999999999999975 889999999864
No 348
>PRK06370 mercuric reductase; Validated
Probab=66.45 E-value=6.6 Score=47.59 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+++|||||..|+-+|..+++. |.+|.++|+++
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~ 204 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGP 204 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 789999999999999999975 88999999885
No 349
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=66.40 E-value=6.9 Score=48.89 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=30.9
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+-.+||+|.|.-|..+|++|+|+ |++|.++|.-++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence 46789999999999999999976 899999997543
No 350
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=65.74 E-value=7 Score=47.16 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-.++|||||..|+-+|..+++. |.+|.++|+++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3689999999999999999975 89999999886
No 351
>KOG2495|consensus
Probab=65.47 E-value=3.3 Score=50.59 Aligned_cols=35 Identities=31% Similarity=0.576 Sum_probs=29.7
Q ss_pred ccEEEECCCchHHHHHHHHhc-------------cCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSE-------------VSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSE-------------dpg~sVLVLEAG~d 197 (1381)
--++||||||.|--.|++|++ ....+|.++||++.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 578999999999999999986 12468999999984
No 352
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=65.27 E-value=7.2 Score=47.55 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||||..|+-+|..+++. |++|.++|+++
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~ 207 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD 207 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 689999999999999999975 88999999875
No 353
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=64.74 E-value=5.4 Score=52.02 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-+|..|++. |.+|.++|+++.
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~ 174 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPG 174 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCc
Confidence 579999999999999999975 899999999875
No 354
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=64.61 E-value=7.4 Score=46.93 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++. +.+|.++|+++.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 203 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGDR 203 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 789999999999999999975 889999999863
No 355
>KOG3923|consensus
Probab=64.18 E-value=30 Score=41.14 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=29.7
Q ss_pred CcccEEEECCCchHHHHHHHHhc------cCCCeEEEEeccCCCC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSE------VSSLKVLLIEAGGDTP 199 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSE------dpg~sVLVLEAG~d~~ 199 (1381)
++-++.|||+|--|++.|-.++| .|..+|-+++--+.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 34689999999999999955555 2667899988665443
No 356
>KOG1399|consensus
Probab=63.70 E-value=23 Score=43.85 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=33.8
Q ss_pred cccCCCCCcch---hhHHHHHHHHHHHhhCC----CCcccceeecccCC-CCccee
Q psy11618 22 EVPFGPYLPEY---NELYCKYIKYIHEKFGP----NFEYDQLLFSYVSP-KDRVTY 69 (1381)
Q Consensus 22 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~ 69 (1381)
..||.++.|+| .+-+|.|.+---+.|+. ||+-+-.++..+++ |=||++
T Consensus 75 dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~ 130 (448)
T KOG1399|consen 75 DFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTT 130 (448)
T ss_pred CCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEE
Confidence 47898888887 34789999999999995 55555556666653 444444
No 357
>PLN02565 cysteine synthase
Probab=62.88 E-value=5.6 Score=46.70 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=27.9
Q ss_pred cccEEEECCCchHHH--HHHHHhcc-CCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCV--LANRLSEV-SSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~V--LAsRLSEd-pg~sVLVLEAG 195 (1381)
+.|+||++.|++|.. +|..+.|. |+.||..+|.=
T Consensus 172 ~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 172 KVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 589999999999954 66777654 78899999983
No 358
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=62.77 E-value=8.6 Score=41.49 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.6
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+-|||+|+.|.-+|..++.+ |.+|.+.|..++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChH
Confidence 57999999999999999976 999999998653
No 359
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=62.65 E-value=8.6 Score=46.53 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++. +.+|.++|+|+.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCC
Confidence 689999999999999999864 889999999864
No 360
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=62.54 E-value=8.3 Score=44.64 Aligned_cols=30 Identities=33% Similarity=0.374 Sum_probs=26.7
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+.|+|+|+-|+.+|.+|+++ |++|.++.+-
T Consensus 3 I~IiGaGa~G~ala~~L~~~-g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSK-KISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHC-CCeEEEEecC
Confidence 68999999999999999986 8889888763
No 361
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.07 E-value=34 Score=42.75 Aligned_cols=169 Identities=13% Similarity=0.145 Sum_probs=86.9
Q ss_pred CCCc-eeeeccCCcccccccCCCCCcch-------------hhHHHHHHHHHHHh------------hCCCCc-------
Q psy11618 6 SFSP-VTIYGAENPLGVEVPFGPYLPEY-------------NELYCKYIKYIHEK------------FGPNFE------- 52 (1381)
Q Consensus 6 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~------------~~~~~~------- 52 (1381)
+.++ ++||..+.-.|.-+||++-.||. .+.+|.|.+|..+. .|+-|-
T Consensus 25 ~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~ 104 (474)
T COG4529 25 RPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGE 104 (474)
T ss_pred CCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcccccCChhhcCCccccccchhHHHH
Confidence 3444 99999999999999999888752 35688888888775 111111
Q ss_pred ccceeecccCCCCcceeeeccccccccCC-CcccchhhccccCCCCccchhhhheecCCCCeEEEEEEeeeceeecCCCC
Q psy11618 53 YDQLLFSYVSPKDRVTYYNVLKTKYEKCP-DFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFW 131 (1381)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~w 131 (1381)
|=.-+++-.-++.|-+-++..++|+-.+= +=---...++.+=||+..+|..+. .+.+.|
T Consensus 105 Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vl--------------------atgh~~ 164 (474)
T COG4529 105 YLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVL--------------------ATGHSA 164 (474)
T ss_pred HHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEE--------------------eccCCC
Confidence 10000111111222221222222221111 000011225566677777765543 244455
Q ss_pred CCChhhhhhhh---ccccccCCCCCCcccCCCCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618 132 PYPRLEKERYN---IYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG 196 (1381)
Q Consensus 132 p~p~l~~~~~~---~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~ 196 (1381)
|++....+.+. .|.+..|+...-+. -+..-+++|+|+|-+=.=+-..+..+ .+.+|.++-+-+
T Consensus 165 ~~~~~~~~~~~~~~~~ia~~~~~~~ld~--v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 165 PPADPAARDLKGSPRLIADPYPANALDG--VDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCcchhhhccCCCcceeccccCCccccc--ccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 55554222222 24444555432222 22233599999999876666666654 234677777665
No 362
>PLN02256 arogenate dehydrogenase
Probab=61.65 E-value=7.7 Score=45.35 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=38.7
Q ss_pred cccccCCCCCCcccCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 144 YRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 144 ~~~~~~p~~~~~~~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
.+.++|++|.+.+....+.-.+.|||.|.-|..+|..+++. |.+|.+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~-G~~V~~~d~ 67 (304)
T PLN02256 18 AQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQ-GHTVLATSR 67 (304)
T ss_pred cCCCChHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEEC
Confidence 45667777766665666667899999999999999999975 677776653
No 363
>PRK06116 glutathione reductase; Validated
Probab=61.19 E-value=9.5 Score=46.01 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++. +.+|.++|+++.
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~ 201 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDA 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 689999999999999999975 889999998863
No 364
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=60.79 E-value=10 Score=40.28 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=25.6
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEE
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLI 192 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVL 192 (1381)
-++|||||..|.-.|..|.+. |.+|.|+
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~-ga~V~VI 42 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDT-GAFVTVV 42 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 579999999999999999975 8899999
No 365
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=60.06 E-value=9.9 Score=46.27 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++. |.+|.++|+++.
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 203 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTK 203 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 689999999999999999975 889999999864
No 366
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=59.55 E-value=11 Score=46.13 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
..+|||||..|+-.|..+++. +.+|.++|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCc
Confidence 689999999999999999975 899999999864
No 367
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=59.05 E-value=11 Score=46.14 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||||..|.-.|..+++. +.+|.++|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRL-GAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 689999999999999999975 88999999875
No 368
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=58.36 E-value=12 Score=45.17 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++. +.+|.++|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 789999999999999999975 899999999864
No 369
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=58.12 E-value=11 Score=41.41 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.7
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEe
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 193 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLE 193 (1381)
--++|||||..|.-.|..|.+. |.+|.|++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEc
Confidence 3679999999999999999975 78999996
No 370
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=58.06 E-value=10 Score=43.90 Aligned_cols=31 Identities=35% Similarity=0.623 Sum_probs=27.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.+.|||+|.-|+..|.+++++ |++|.+++++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecH
Confidence 478999999999999999986 8899999874
No 371
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=57.78 E-value=11 Score=48.54 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-.|..+++. +.+|.++|+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCc
Confidence 689999999999999999975 889999999864
No 372
>PLN02507 glutathione reductase
Probab=57.27 E-value=12 Score=46.48 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-.|..+++. +.+|.++|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCC
Confidence 689999999999999999975 899999999864
No 373
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=57.12 E-value=11 Score=43.67 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++.|||+|.-|+.+|.+++++ |++|.+.++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 578999999999999999976 88999998764
No 374
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.62 E-value=12 Score=42.65 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=27.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-+.|||+|..|..+|..++++ |++|.+.|.-+
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 368999999999999999975 88999998654
No 375
>PTZ00052 thioredoxin reductase; Provisional
Probab=56.62 E-value=16 Score=45.30 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+.+|||||..|+-+|..+++. +.+|.++|+.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 689999999999999999975 8899999864
No 376
>PRK13748 putative mercuric reductase; Provisional
Probab=56.61 E-value=12 Score=46.40 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=28.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.++|||||..|+-+|..+++. +++|.++|++
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecC
Confidence 689999999999999999975 8899999985
No 377
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=55.89 E-value=12 Score=42.70 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=28.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.|||+|.-|+.+|.+|+++ |++|.+.++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 478999999999999999975 88898888754
No 378
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.86 E-value=13 Score=44.80 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|+|+|.+|..+|.+|++. |.+|.+.|...
T Consensus 7 ~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 579999999999999999976 89999998864
No 379
>PRK14694 putative mercuric reductase; Provisional
Probab=54.95 E-value=18 Score=44.14 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.++|||||..|+-+|..+++. +.+|.++|++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECC
Confidence 789999999999999999975 8899999875
No 380
>PLN02546 glutathione reductase
Probab=54.39 E-value=14 Score=46.72 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|||||..|+-.|..+++. +.+|.++|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccc
Confidence 789999999999999999975 889999999864
No 381
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.27 E-value=19 Score=44.00 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=28.4
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||+|.+|..+|.-|++. |.+|.+.|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 689999999999999888865 89999999764
No 382
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=53.58 E-value=14 Score=45.76 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=27.8
Q ss_pred cEEEECCCchHHHHHHHHhc--cCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSE--dpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++ +.|.+|.++|+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 68999999999999965542 23789999999975
No 383
>PRK07045 putative monooxygenase; Reviewed
Probab=53.18 E-value=25 Score=41.28 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=33.9
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
+++|.++..+++|+++..++++..++|+.. +|+ +++++ +|++|...+|.
T Consensus 118 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--~g~--~~~~~--~vIgADG~~S~ 166 (388)
T PRK07045 118 GLPNVRLRFETSIERIERDADGTVTSVTLS--DGE--RVAPT--VLVGADGARSM 166 (388)
T ss_pred cCCCeeEEeCCEEEEEEECCCCcEEEEEeC--CCC--EEECC--EEEECCCCChH
Confidence 568999999999999998744555667664 464 56673 45545546664
No 384
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=53.08 E-value=15 Score=42.68 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=28.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-+.|+|+|+-|+.+|++|+++ |++|.+.++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 479999999999999999975 88999987743
No 385
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=52.81 E-value=10 Score=46.01 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=38.5
Q ss_pred CCCCeEEEcCcEEEEEEec--CC-CeEEEEEEEecCCeEEEEecCcEEEEcCCch
Q psy11618 375 KRTNLYVLKRSKVTKVIIN--DQ-NVATGVEYVNSKGETVRVTANKEVILTAGAI 426 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd--~g-~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI 426 (1381)
+..+++.--+++|+.|.+| .| +.|+.+.+.. +++..+...+.-|++.-|.|
T Consensus 238 ~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~-d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 238 KSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLG-DAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred HHcCCceEeccEEeeeeeccCcchhHHHHHHHhc-CcceeecCCCceEEEeccee
Confidence 5678999999999999998 23 3455554322 57777888888999999976
No 386
>PTZ00058 glutathione reductase; Provisional
Probab=52.78 E-value=14 Score=46.61 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|||||..|+-.|..+++. |.+|.++|+++.
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~ 271 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRL-GAESYIFARGNR 271 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCcEEEEEeccc
Confidence 689999999999999999975 899999999863
No 387
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.62 E-value=15 Score=42.00 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.6
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|||+|.-|..+|..++++ |++|.+.+..+
T Consensus 4 V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 68999999999999999976 88999997764
No 388
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.63 E-value=16 Score=43.94 Aligned_cols=33 Identities=39% Similarity=0.546 Sum_probs=29.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.++|+|+|..|..+|.+|++. |.+|.++|+-++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCHH
Confidence 489999999999999999975 889999998653
No 389
>PRK11761 cysM cysteine synthase B; Provisional
Probab=51.19 E-value=11 Score=43.79 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=27.8
Q ss_pred cccEEEECCCchHHH--HHHHHhc-cCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCV--LANRLSE-VSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~V--LAsRLSE-dpg~sVLVLEAG~ 196 (1381)
+.|+||++.|++|.. +|..+.| +|+.||..+|.-+
T Consensus 167 ~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 167 RITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred CCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 589999999999854 5566665 4788999999954
No 390
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=51.04 E-value=4 Score=48.24 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=28.6
Q ss_pred CCCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
..+...+.|||||-+++-++..|.++ ++.+|-.+=+++.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 44567899999999999999999876 3468888877763
No 391
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=50.74 E-value=9.5 Score=44.91 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=30.1
Q ss_pred cccEEEECCCchH--HHHHHHHhcc-CCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAG--CVLANRLSEV-SSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG--~VLAsRLSEd-pg~sVLVLEAG~ 196 (1381)
..|++|.|-||+| +-+|+.|-|. |+.+|..+|-=+
T Consensus 169 ~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~ 206 (300)
T COG0031 169 KVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEG 206 (300)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCC
Confidence 3899999999999 6789999875 788999998764
No 392
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=50.67 E-value=14 Score=41.87 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=29.9
Q ss_pred CeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHH
Q psy11618 378 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ 430 (1381)
Q Consensus 378 NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPq 430 (1381)
+-+|.+|++|++|..+ ++++ .|... +|+ +++|+ .||+|+..=...+
T Consensus 223 g~~i~l~~~V~~I~~~-~~~v-~v~~~--~g~--~~~ad-~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERE-DGGV-TVTTE--DGE--TIEAD-AVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEE-SSEE-EEEET--TSS--EEEES-EEEE-S-HHHHHT
T ss_pred CceeecCCcceecccc-cccc-ccccc--cce--EEecc-eeeecCchhhhhh
Confidence 3389999999999998 4433 24343 465 67774 6999887554443
No 393
>KOG1336|consensus
Probab=50.15 E-value=20 Score=44.61 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=72.5
Q ss_pred cccCCCCc---ceeeeccccccccCCCcccchhh-ccccCCCC-ccchhhhheecCCCCeEEEEEEeeeceeecCCCCCC
Q psy11618 59 SYVSPKDR---VTYYNVLKTKYEKCPDFWPYIKY-IHEKFGPN-FEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPY 133 (1381)
Q Consensus 59 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~-~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~wp~ 133 (1381)
+|.-|-|| ...++|--++.+|-++=| |=++ |.--.|++ --+|..=-..|+..+++.=|+-++.++-.++..-|.
T Consensus 108 ~~~~pydr~~Ls~~~~~~~~~~a~r~~e~-Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~ 186 (478)
T KOG1336|consen 108 EYLLPYDRARLSKFLLTVGEGLAKRTPEF-YKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDI 186 (478)
T ss_pred cccCcccchhcccceeeccccccccChhh-HhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCC
Confidence 47778888 446666666665544222 3333 44445666 222322224455555554444444444334444444
Q ss_pred ChhhhhhhhccccccCCCCCCcccCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 134 PRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 134 p~l~~~~~~~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
|=.....+..+|..+-.++. .......--+++||||-.|..+|+.+.++ +++|.++|.-++.
T Consensus 187 pG~~~~nv~~ireieda~~l--~~~~~~~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~ 248 (478)
T KOG1336|consen 187 PGVELKNVFYLREIEDANRL--VAAIQLGGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWL 248 (478)
T ss_pred CCccccceeeeccHHHHHHH--HHHhccCceEEEECchHHHHHHHHHHHhc-CceEEEEccCccc
Confidence 42221111112222111110 00111234589999999999999999986 8999999987654
No 394
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=49.67 E-value=37 Score=32.28 Aligned_cols=34 Identities=18% Similarity=0.438 Sum_probs=26.0
Q ss_pred cCCcEEecccCCCCCCCCCchHHHHHHHHHHHHH
Q psy11618 754 IKGLRVADISVLPNAIITQSDAISFLLLFLFLLL 787 (1381)
Q Consensus 754 VdNLRVVDASVfPtiPSgNpqApVyMIA~l~~~~ 787 (1381)
+.|.||+|..+.|..|+...-+-.+++|..+.+.
T Consensus 38 ~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~Gl~ 71 (82)
T PF13807_consen 38 VSNVRIVDPAIVPDKPVSPKRALILALGLFLGLI 71 (82)
T ss_pred CCCceeccccccCCCCCCCcHHHHHHHHHHHHHH
Confidence 4578999999999999887777666666555443
No 395
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=48.60 E-value=28 Score=43.14 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=30.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
..+|||||.-|+-.|+-.++- |.+|.++|+++.-
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 479999999999999999964 9999999999863
No 396
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=48.39 E-value=21 Score=40.47 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-++..+.|||.|.-||.+|..|+...-.++.+++...
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3567899999999999999999976334777777653
No 397
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=48.02 E-value=20 Score=43.69 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+++|+|+|..|.++|+.||++...+|.+-.+-.+
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 6899999999999999999885578888777653
No 398
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=47.68 E-value=20 Score=42.97 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=29.6
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
=.++|+|+|.-|..+|.+|++. +.+|.++|.-++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid~~~~ 265 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE-GYSVKLIERDPE 265 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHH
Confidence 3599999999999999999975 889999987653
No 399
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.50 E-value=21 Score=40.81 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=27.6
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.|||+|+-|..+|..++++ |++|.+.|.-+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 368999999999999999975 88999987643
No 400
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.41 E-value=17 Score=41.88 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-+-|||+|+-|+-+|..++.+ |++|.+.|.-++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 467999999999999999965 999999998764
No 401
>KOG1252|consensus
Probab=47.32 E-value=6.5 Score=46.88 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCcccEEEECCCchH--HHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 160 GDCFDIIIVGASAAG--CVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG--~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
....|++|.|+||+| .-+.+.+.|. |+.+|...|--..
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S 250 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQES 250 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcc
Confidence 356899999999999 4567778765 8889999886653
No 402
>PRK12831 putative oxidoreductase; Provisional
Probab=47.28 E-value=44 Score=41.18 Aligned_cols=58 Identities=12% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------c---------CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-------S---------KGETVRVTANKEVILTAGAIANAQLLL 433 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-------~---------~Gr~~tV~ArKEVILSAGAI~SPqLLm 433 (1381)
.+.|+++.+++.++++.-+++++++||++.+ . +|+++++.++ .||+|.|..-...++.
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 402 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD-TVIMSLGTSPNPLISS 402 (464)
T ss_pred HHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECCCCCCChhhhc
Confidence 3579999999999999876567899998852 1 2344567885 7999999655444443
No 403
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=46.24 E-value=21 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+-.+||+|.|.-|..+|++|.++ |.+|.++|.-++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHH
Confidence 45799999999999999999975 889999998653
No 404
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=45.87 E-value=21 Score=45.46 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.5
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+-.+||+|.|.-|..+|+.|.++ +++|.++|.-++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~ 434 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDIS 434 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHH
Confidence 45799999999999999999975 889999997653
No 405
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=45.29 E-value=11 Score=48.17 Aligned_cols=9 Identities=33% Similarity=0.446 Sum_probs=5.4
Q ss_pred cccccCccc
Q psy11618 241 AGKGLGGSS 249 (1381)
Q Consensus 241 RGKvLGGSS 249 (1381)
+||+-||++
T Consensus 361 ~GRVyGGtG 369 (1463)
T PHA03308 361 RGQVYHGSG 369 (1463)
T ss_pred CCceecCCC
Confidence 566666644
No 406
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.06 E-value=23 Score=42.88 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=27.2
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.|||.|.+|..+|+-|.+. |++|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 68999999999987777764 899999998754
No 407
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=45.04 E-value=24 Score=40.39 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=27.1
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|||+|.-|+.+|..++++ |.+|.+.|.-+
T Consensus 6 I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 68999999999999999975 88999988644
No 408
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=44.94 E-value=19 Score=35.40 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=26.6
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.-.++|||||..|..-|.+|.+. |.+|.|+..-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 34689999999999999999975 7888887544
No 409
>PRK04148 hypothetical protein; Provisional
Probab=44.20 E-value=22 Score=37.51 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=27.4
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-+++||.| .|..+|.+|++. |.+|..+|--++
T Consensus 19 kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 48999999 787779999975 899999988764
No 410
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=44.01 E-value=40 Score=44.18 Aligned_cols=74 Identities=20% Similarity=0.420 Sum_probs=48.1
Q ss_pred chhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCcc-ccCC
Q psy11618 369 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHL-DEVK 447 (1381)
Q Consensus 369 L~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~L-e~lG 447 (1381)
|+... ++...++.+++.++.|.- .+++.+|++.| |+ .+.| .-||.|+| |-|...+ ++.|
T Consensus 193 L~~~l-e~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D--G~--~i~a-d~VV~a~G------------IrPn~ela~~aG 252 (793)
T COG1251 193 LRRKL-EDLGIKVLLEKNTEEIVG--EDKVEGVRFAD--GT--EIPA-DLVVMAVG------------IRPNDELAKEAG 252 (793)
T ss_pred HHHHH-Hhhcceeecccchhhhhc--CcceeeEeecC--CC--cccc-eeEEEecc------------cccccHhHHhcC
Confidence 44444 677899999998888764 46899999887 54 3445 46888876 5565555 3446
Q ss_pred CCcccCCccchhccc
Q psy11618 448 IPVKQDLRVGENLKL 462 (1381)
Q Consensus 448 IpVVvDLPVGrNLQD 462 (1381)
|++-...+|=.++|.
T Consensus 253 lavnrGIvvnd~mqT 267 (793)
T COG1251 253 LAVNRGIVVNDYMQT 267 (793)
T ss_pred cCcCCCeeecccccc
Confidence 666554445444443
No 411
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.01 E-value=26 Score=40.37 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=27.4
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.|||+|.-|+.+|..++++ |++|.+.+.-+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 478999999999999999965 88999987643
No 412
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=43.81 E-value=27 Score=38.44 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.4
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
-++|+|.|..|..+|.+|.+. |.+|.+.|.-
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 489999999999999999976 8999987654
No 413
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=43.68 E-value=35 Score=34.91 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=26.6
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|||.|.-|+.+|..|+...-.++.+++...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999976334788887765
No 414
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=43.36 E-value=28 Score=40.79 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=27.3
Q ss_pred cEEEECCCchHHHHHHHHhccCCCe-EEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~s-VLVLEAG~ 196 (1381)
.++|||+|..|+-+|..+++. +.+ |.++|+++
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 589999999999999999865 554 99998764
No 415
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=43.17 E-value=24 Score=41.46 Aligned_cols=32 Identities=34% Similarity=0.541 Sum_probs=27.2
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.|+|+|+-||..|.+|++. |..|.++=+++.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 57999999999999999987 478888777653
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.09 E-value=25 Score=39.97 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=27.4
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.|||+|..|+.+|..++++ |.+|.+.|.-+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 478999999999999999976 88899887543
No 417
>PRK00811 spermidine synthase; Provisional
Probab=42.88 E-value=39 Score=39.06 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=23.7
Q ss_pred ccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
-.+.++|+|.++. |+.+.+. +..+|.++|.-+.
T Consensus 78 ~~VL~iG~G~G~~--~~~~l~~~~~~~V~~VEid~~ 111 (283)
T PRK00811 78 KRVLIIGGGDGGT--LREVLKHPSVEKITLVEIDER 111 (283)
T ss_pred CEEEEEecCchHH--HHHHHcCCCCCEEEEEeCCHH
Confidence 3689999999765 3444444 3468999998764
No 418
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.65 E-value=30 Score=40.07 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=26.7
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.+.|+|+|.-|+.+|.+++++ |++|.+..+-
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~ 36 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRR 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 478999999999999999976 7888877654
No 419
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=42.61 E-value=36 Score=40.27 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=22.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|+|+|+-|..++.-.....-.+|.++|.-+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 699999999998763333323336788876544
No 420
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=42.48 E-value=33 Score=34.87 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-++|+|+|.-|+.+|..|+...=.++.+++-+.
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 468999999999999999976334788887664
No 421
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=42.28 E-value=40 Score=37.87 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=33.6
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhH
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
+.+.++..+++|+++..| ++++++ ++.+. +|++++++|+ +|+.|=..+|.
T Consensus 123 ~~gv~i~~~~~v~~~~~d-~~~~~~-~~~~~~~g~~~~i~ad--lvVgADG~~S~ 173 (356)
T PF01494_consen 123 ERGVDIRFGTRVVSIEQD-DDGVTV-VVRDGEDGEEETIEAD--LVVGADGAHSK 173 (356)
T ss_dssp HHTEEEEESEEEEEEEEE-TTEEEE-EEEETCTCEEEEEEES--EEEE-SGTT-H
T ss_pred hhhhhheeeeeccccccc-cccccc-ccccccCCceeEEEEe--eeecccCcccc
Confidence 445999999999999887 344443 33343 6888899995 55555556664
No 422
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.19 E-value=28 Score=41.27 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=27.8
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+-|||+|+-|+-.|.+++.+ |++|.+.|.-+
T Consensus 10 VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 67999999999999999964 99999998764
No 423
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.04 E-value=29 Score=42.37 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||||..|.-+|..+++. |.+|.++++++
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 699999999999999999875 78899999875
No 424
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=41.82 E-value=43 Score=41.23 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------cC---------CeEEEEecCcEEEEcCCchhh-HHHHHHcCC
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVN-------SK---------GETVRVTANKEVILTAGAIAN-AQLLLLSGI 437 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-------~~---------Gr~~tV~ArKEVILSAGAI~S-PqLLmlSGI 437 (1381)
+.++++.+++.+++|.-+++++++||++.. .+ |+++++.++ .||+|.|.... +.++..+|+
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~~~gl 409 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLAGHGI 409 (467)
T ss_pred hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCccccccccCc
Confidence 578999999999999876567899998742 12 345678885 79999996543 344444443
No 425
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=41.48 E-value=48 Score=39.30 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=35.5
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
.+.|.++..+++|+++.-+ ++..++|++.+ +|++++++|+ +|+.|-..+|.
T Consensus 114 ~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~-~G~~~~i~ad--~vVgADG~~S~ 164 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDF-DSDRPYVTYEK-DGEEHRLDCD--FIAGCDGFHGV 164 (392)
T ss_pred HhCCCeEEEeeeEEEEEec-CCCceEEEEEc-CCeEEEEEeC--EEEECCCCCCc
Confidence 3568999999999998752 23344677754 6887889995 55555556663
No 426
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.33 E-value=30 Score=38.31 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=26.3
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
-++|||||..|.--|+.|.+. |.+|.|+.-
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcC
Confidence 579999999999999999975 889999853
No 427
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=41.29 E-value=46 Score=31.53 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=27.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
.+.|+|+|.+|..+|.++.+..+.+|.+.++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999999999865678888877
No 428
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=40.72 E-value=28 Score=43.06 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=27.7
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
..+|||||..|+-.|..+++. +.+|.++|+.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEec
Confidence 589999999999999999975 8899999863
No 429
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=40.49 E-value=53 Score=36.19 Aligned_cols=46 Identities=26% Similarity=0.133 Sum_probs=31.7
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCch
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI 426 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI 426 (1381)
++.+.++..+++|+++..++ +++ .|...+ + ..+++| |-||.|.|+-
T Consensus 102 ~~~gv~~~~~~~v~~~~~~~-~~~-~~~~~~-~--~~~~~a-~~vv~a~G~~ 147 (295)
T TIGR02032 102 QEAGAELRLGTTVLDVEIHD-DRV-VVIVRG-G--EGTVTA-KIVIGADGSR 147 (295)
T ss_pred HHcCCEEEeCcEEeeEEEeC-CEE-EEEEcC-c--cEEEEe-CEEEECCCcc
Confidence 46789999999999998873 332 233322 2 236777 4799999954
No 430
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=40.44 E-value=31 Score=41.11 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=29.1
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCC-eEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~ 196 (1381)
++--++|||+|..|+.+|..|++. |. ++.++|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 345799999999999999999976 65 788887654
No 431
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=39.63 E-value=32 Score=37.89 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=26.1
Q ss_pred EEEEC-CCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVG-GGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.||| +|.-|..+|.+++++ |++|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 67997 799999999999976 78998876554
No 432
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=39.20 E-value=35 Score=38.77 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.5
Q ss_pred hHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 173 AGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 173 AG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
||.++|.+|+++ |.+|.|+||.+..
T Consensus 2 aGL~aA~~L~~~-G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 2 AGLAAAYYLAKA-GYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHT-TTEEEEEESSSSS
T ss_pred hHHHHHHHHHhC-CCCEEEEEcCCCC
Confidence 899999999976 8999999999753
No 433
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=38.91 E-value=35 Score=39.17 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=27.2
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|||+|.-|+.+|.++++. |.+|.+.|.-+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 78999999999999999965 88999887654
No 434
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=38.60 E-value=65 Score=38.82 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=28.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+.-+++|+|+|.+|..+|..+.+. |.+|.+.+.-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence 345699999999999999999865 7789998864
No 435
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=38.16 E-value=44 Score=34.36 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=27.1
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.--++|+|+|-+|..+|..|++..-.+|.+.-+-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3468999999999999999998733458887653
No 436
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=37.99 E-value=36 Score=38.25 Aligned_cols=32 Identities=31% Similarity=0.559 Sum_probs=26.5
Q ss_pred cEEEECCCchHHHHHHHHhccCCC---eEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSL---KVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~---sVLVLEAG~ 196 (1381)
-++|+|+|.||..+|..+.+. |. +|.++++-+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 589999999999999999875 43 588887764
No 437
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=37.37 E-value=32 Score=41.49 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=28.0
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.|||.|..|+..|.+++++ |++|.+.+.-++
T Consensus 3 I~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADL-GHEVTGVDIDQE 34 (411)
T ss_pred EEEECCCchhHHHHHHHHhc-CCeEEEEECCHH
Confidence 67999999999999999975 899999987553
No 438
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=36.71 E-value=40 Score=41.11 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=27.8
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++|||||..|.-+|..+++....+|.++++.+
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 789999999999999999876334899998753
No 439
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=36.51 E-value=67 Score=37.45 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN 428 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S 428 (1381)
+++|.++..+++|+++.-+ ++. +.|+. .+|+ +++| +-||.|.| .+|
T Consensus 117 ~~~gv~~~~~~~v~~i~~~-~~~-~~v~~--~~g~--~~~a-d~vV~AdG-~~S 162 (382)
T TIGR01984 117 LLTNIQLYCPARYKEIIRN-QDY-VRVTL--DNGQ--QLRA-KLLIAADG-ANS 162 (382)
T ss_pred hCCCcEEEcCCeEEEEEEc-CCe-EEEEE--CCCC--EEEe-eEEEEecC-CCh
Confidence 3469999999999999866 332 23433 2454 5677 57888888 444
No 440
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=36.27 E-value=40 Score=36.74 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=25.2
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+.|+|.|=.|.+.|..+|+. |++|...|..++
T Consensus 3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHT-TSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhC-CCEEEEEeCChH
Confidence 57999999999999999986 999999998764
No 441
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=36.07 E-value=59 Score=39.04 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=42.4
Q ss_pred hhhhcchhhhcCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecC-----CeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618 364 AADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSK-----GETVRVTANKEVILTAGAIANAQLLLLSGI 437 (1381)
Q Consensus 364 Aa~AYL~Pa~~~R~NLtILTnA~VtRIlfd-~g~RAtGVE~vd~~-----Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI 437 (1381)
..+.++...+ .+.+.++..++ |+++..+ +++...+|++.+.+ |++.+++|+ -||-|.|+ +| ++-..-|+
T Consensus 94 ~~d~~L~~~a-~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~-~VIgADG~-~S-~v~~~~g~ 168 (398)
T TIGR02028 94 VLDSFLRRRA-ADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD-AVIGADGA-NS-RVAKEIDA 168 (398)
T ss_pred HHHHHHHHHH-HHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeC-EEEECCCc-ch-HHHHHhCC
Confidence 3344555444 56789998875 7777653 23456678776432 566789994 68888774 44 33343354
Q ss_pred C
Q psy11618 438 G 438 (1381)
Q Consensus 438 G 438 (1381)
+
T Consensus 169 ~ 169 (398)
T TIGR02028 169 G 169 (398)
T ss_pred C
Confidence 3
No 442
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.69 E-value=39 Score=40.71 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=27.4
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++|+|+|.+|..+|..|++. |.+|.+.|...
T Consensus 8 v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 69999999999999999975 89999988664
No 443
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.89 E-value=56 Score=35.37 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=28.4
Q ss_pred CcccEEEECCCc-hHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASA-AGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGT-AG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+...++|||+|- +|..+|..|.++ |.+|.+..+-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 456899999996 699999999975 7789988864
No 444
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=34.51 E-value=46 Score=39.72 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=30.2
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCC-eEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~ 196 (1381)
++-.++|||+|.-|+.+|..|++. |. ++.+++...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 456799999999999999999986 65 899998854
No 445
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=34.23 E-value=48 Score=40.05 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=29.4
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++.-+.|||+|..|+.+|..|++..-.++.+++...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 456799999999999999999986335788887664
No 446
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=33.77 E-value=79 Score=36.62 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=35.6
Q ss_pred hhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618 364 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 364 Aa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
-.+...+.+. +.+|.++..+++|+++..+ ++++ .|+.. +|+ ++++ +-||.|.|+ +|.
T Consensus 108 l~~~L~~~~~-~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~--~g~--~~~~-~~vi~adG~-~S~ 164 (385)
T TIGR01988 108 LQQALWERLQ-EYPNVTLLCPARVVELPRH-SDHV-ELTLD--DGQ--QLRA-RLLVGADGA-NSK 164 (385)
T ss_pred HHHHHHHHHH-hCCCcEEecCCeEEEEEec-CCee-EEEEC--CCC--EEEe-eEEEEeCCC-CCH
Confidence 3344444444 5667999999999999876 3333 24432 465 3666 467777775 443
No 447
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=33.64 E-value=78 Score=37.37 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=36.0
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 438 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG 438 (1381)
++.|.++..+++|+++.-+ ++++ .|+.. +|+ +++| +-||.|.|+ +| ++-...|+.
T Consensus 124 ~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~--~g~--~~~a-~~vV~AdG~-~S-~vr~~~g~~ 178 (392)
T PRK08773 124 HAAGVQLHCPARVVALEQD-ADRV-RLRLD--DGR--RLEA-ALAIAADGA-AS-TLRELAGLP 178 (392)
T ss_pred HhCCCEEEcCCeEEEEEec-CCeE-EEEEC--CCC--EEEe-CEEEEecCC-Cc-hHHHhhcCC
Confidence 4568999999999999876 3333 24432 454 4677 478888886 44 455555543
No 448
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=33.25 E-value=44 Score=41.93 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.6
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+-|||+|+-|.-+|..++++ |++|.+.|+-++
T Consensus 8 V~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e 39 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAE 39 (503)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 78999999999999999965 999999987654
No 449
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=33.17 E-value=52 Score=38.71 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=27.4
Q ss_pred cccEEEECCCchHHHH--HHHHhc-cCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVL--ANRLSE-VSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VL--AsRLSE-dpg~sVLVLEAG~ 196 (1381)
++|+||++.|++|... |..+.+ +|+.+|..+|..+
T Consensus 184 ~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 184 RFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 6899999999998664 444433 4789999999965
No 450
>PRK06223 malate dehydrogenase; Reviewed
Probab=32.76 E-value=49 Score=38.16 Aligned_cols=30 Identities=37% Similarity=0.544 Sum_probs=26.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCC-eEEEEec
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEA 194 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEA 194 (1381)
-+.|||+|..|..+|..+++. +. +|.++|.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~ 34 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDI 34 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEEC
Confidence 478999999999999999975 33 8999988
No 451
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=32.74 E-value=44 Score=31.54 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=24.3
Q ss_pred EEEECCCchHHHHHHHHhccCC---CeEEEE-eccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSS---LKVLLI-EAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg---~sVLVL-EAG~ 196 (1381)
+.|||+|.-|..+|+++.++ + .+|.+. ++-+
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence 46789999999999999976 5 677755 5544
No 452
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=32.69 E-value=53 Score=38.20 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=27.5
Q ss_pred EEEECCCchHHHHHHHHhccCC-CeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~d 197 (1381)
+.|||+|.+|.++|..+++..- .+|.+++.-++
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6899999999999999997632 57999988553
No 453
>PLN02823 spermine synthase
Probab=32.65 E-value=76 Score=38.05 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.6
Q ss_pred ccEEEECCCchHHHHHHHHhc-cCCCeEEEEeccCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGD 197 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG~d 197 (1381)
-++.|+|||.+|. |+++.+ .+..+|.++|--+.
T Consensus 105 k~VLiiGgG~G~~--~re~l~~~~~~~v~~VEiD~~ 138 (336)
T PLN02823 105 KTVFIMGGGEGST--AREVLRHKTVEKVVMCDIDQE 138 (336)
T ss_pred CEEEEECCCchHH--HHHHHhCCCCCeEEEEECCHH
Confidence 3789999996654 344443 34568999998763
No 454
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=32.55 E-value=45 Score=39.60 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=24.8
Q ss_pred EEEECCCchHHHHHHHHhccCCC-eEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~ 196 (1381)
++|+|||..|..+|..|+++++. +|.+..+-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~ 33 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP 33 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence 57999999999999999988655 788776654
No 455
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.46 E-value=58 Score=35.10 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.6
Q ss_pred EEEECCCchHHHHHHHHhccCCC-eEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~ 196 (1381)
+.|||+|..|+.+|..|++. |. ++.+++...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 57999999999999999976 54 688888764
No 456
>PRK08163 salicylate hydroxylase; Provisional
Probab=32.45 E-value=74 Score=37.39 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=35.0
Q ss_pred hhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618 364 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA 427 (1381)
Q Consensus 364 Aa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~ 427 (1381)
-.++..+.+. +++|.++..+++|+++..+ ++ ||++...+|+ +++| +.||.|.|+=.
T Consensus 111 l~~~L~~~~~-~~~~v~~~~~~~v~~i~~~-~~---~v~v~~~~g~--~~~a-d~vV~AdG~~S 166 (396)
T PRK08163 111 IHLSLLEAVL-DHPLVEFRTSTHVVGIEQD-GD---GVTVFDQQGN--RWTG-DALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHH-hcCCcEEEeCCEEEEEecC-CC---ceEEEEcCCC--EEec-CEEEECCCcCh
Confidence 3334444444 4567999999999999865 33 3333333454 4677 46888888443
No 457
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.42 E-value=53 Score=38.43 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=28.0
Q ss_pred cEEEECCCchHHHHHHHHhccC-CCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVS-SLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdp-g~sVLVLEAG~d 197 (1381)
.+.|||+|..|+++|..+++.. ...|.++|...+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 4789999999999999999762 257999997653
No 458
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=31.87 E-value=68 Score=38.41 Aligned_cols=55 Identities=29% Similarity=0.354 Sum_probs=36.5
Q ss_pred hcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618 367 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
.|+...+ .+.+.++.++++|+++..++++.++|+.- + + .+++|+ -||.|-| .+|+
T Consensus 99 ~~La~~A-~~aGae~~~~~~~~~~~~~~~~~~~~~~~-~--~--~e~~a~-~vI~AdG-~~s~ 153 (396)
T COG0644 99 KWLAERA-EEAGAELYPGTRVTGVIREDDGVVVGVRA-G--D--DEVRAK-VVIDADG-VNSA 153 (396)
T ss_pred HHHHHHH-HHcCCEEEeceEEEEEEEeCCcEEEEEEc-C--C--EEEEcC-EEEECCC-cchH
Confidence 3554444 57899999999999999985454444432 2 2 688884 5666555 5554
No 459
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=31.55 E-value=54 Score=38.16 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=29.9
Q ss_pred CcccEEEECCCchHHHHHHHHhccCC-CeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~ 196 (1381)
+..-++|||+|..|+.+|.-|++. | .++.++|.-.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence 456899999999999999999986 5 6899998654
No 460
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=31.37 E-value=56 Score=36.11 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=28.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCC-eEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG 195 (1381)
+.-.+.|||+|.-|+.+|..|++. |. ++.+++..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 346789999999999999999976 65 68887766
No 461
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=31.26 E-value=57 Score=35.86 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=29.3
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++.-++|||.|..|+.+|..|++..-.++.+++...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 456789999999999999999986334788887654
No 462
>PRK08328 hypothetical protein; Provisional
Probab=31.24 E-value=58 Score=36.63 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=27.5
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
++.-+.|||+|..||.+|..|+...=.++.+++..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34679999999999999999998633467777433
No 463
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=31.21 E-value=68 Score=32.22 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=26.9
Q ss_pred EEEEC-CCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVG-GGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+-||| +|.+|..+.+.|++.|+.++..+-+..+
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred EEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 46999 9999999999999988888666655543
No 464
>KOG1481|consensus
Probab=30.27 E-value=41 Score=39.70 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=25.8
Q ss_pred CCcccEEEECCCchH--HHHHHHHhccCCCeEEEEeccC
Q psy11618 160 GDCFDIIIVGASAAG--CVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG--~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
...-|.-|.|+||+| .-+++-|-|....+|-+.=|-|
T Consensus 211 kGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDP 249 (391)
T KOG1481|consen 211 KGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADP 249 (391)
T ss_pred cCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCC
Confidence 346899999999999 4467778776444455554444
No 465
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=30.25 E-value=55 Score=38.10 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=28.5
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-.+.|+|.|..|..+|+++.+. |.+|.+.++-+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3579999999999999999865 78999988754
No 466
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=30.14 E-value=90 Score=36.88 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 199 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~ 199 (1381)
|++|||||-++.--|.-|++- ..+|-++=++++-.
T Consensus 145 ~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~r 179 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFR 179 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccC
Confidence 999999999999999999975 67899999998643
No 467
>PRK07326 short chain dehydrogenase; Provisional
Probab=30.14 E-value=60 Score=34.88 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.4
Q ss_pred cEEEECC-CchHHHHHHHHhccCCCeEEEEecc
Q psy11618 164 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 164 DYIIVGG-GTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
=++|.|| |.-|..+|.++++. |.+|.++.+.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~ 39 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAE-GYKVAITARD 39 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCC
Confidence 3678875 88999999999975 8899888553
No 468
>PRK06475 salicylate hydroxylase; Provisional
Probab=29.87 E-value=87 Score=37.28 Aligned_cols=50 Identities=8% Similarity=0.116 Sum_probs=33.1
Q ss_pred CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA 429 (1381)
Q Consensus 375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP 429 (1381)
+.+|.++..+++|+++..+ +++ +.|++.+.+| ..+++|+ +|+.|-.++|.
T Consensus 119 ~~~~i~v~~~~~v~~~~~~-~~~-v~v~~~~~~~-~~~~~ad--lvIgADG~~S~ 168 (400)
T PRK06475 119 NNPGIEIKLGAEMTSQRQT-GNS-ITATIIRTNS-VETVSAA--YLIACDGVWSM 168 (400)
T ss_pred hcCCcEEEECCEEEEEecC-CCc-eEEEEEeCCC-CcEEecC--EEEECCCccHh
Confidence 4568999999999999765 332 3444544222 2356773 77777778885
No 469
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.85 E-value=77 Score=38.67 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=46.5
Q ss_pred Eeeec--eeecCCCCCCChhhhhhhhccccccCCCCCCcccCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 119 VLKTK--YEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 119 ~~~~~--~~~~~~~wp~p~l~~~~~~~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++|++ +..+.--|.---.+.++.++-+.+.|=+.+-.. .-+--|+-|||||.+|.-+|--||-- -..|.++|-.+
T Consensus 311 vLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP--LF~gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~ 387 (520)
T COG3634 311 VLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--LFKGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP 387 (520)
T ss_pred eeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc--ccCCceEEEECCCcchHHHHHhHHhh-hheeeeeecch
Confidence 55555 334444464222233333344555554321111 12345999999999999999999953 35799999987
Q ss_pred CC
Q psy11618 197 DT 198 (1381)
Q Consensus 197 d~ 198 (1381)
.-
T Consensus 388 eL 389 (520)
T COG3634 388 EL 389 (520)
T ss_pred hh
Confidence 53
No 470
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.52 E-value=44 Score=34.76 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
+...-.+-|||+|-.|..+|..|.++ |++|.-+.+
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~s 41 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARA-GHEVVGVYS 41 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHT-TSEEEEESS
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEe
Confidence 33457899999999999999999975 788766554
No 471
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=29.51 E-value=67 Score=36.50 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=28.6
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+...+.|||+|..|+.+|..|+...=.++.+++...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 456899999999999999999976334677776553
No 472
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=29.38 E-value=63 Score=36.06 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.3
Q ss_pred CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++--+.|||.|..|+.+|..|+...=.++.+++...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 346789999999999999999976334677776553
No 473
>PRK08017 oxidoreductase; Provisional
Probab=29.14 E-value=68 Score=34.94 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=26.4
Q ss_pred EEEECC-CchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGG-GTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
++|.|| |.-|..+|.+++++ |.+|.++.+.+
T Consensus 5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 899998 99999999999976 88998876543
No 474
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=29.03 E-value=74 Score=37.17 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL 431 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL 431 (1381)
+.+.+|.+|++|++|..+ +++++.+ +.+ +|+ ++.|+ .||+|+.+-...++
T Consensus 209 ~~g~~i~~~~~V~~i~~~-~~~~~~~-~~~-~g~--~~~~d-~vi~a~p~~~~~~l 258 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEAN-AGGIRAL-VLS-GGE--TLPAD-AVVLAVPPRHAASL 258 (419)
T ss_pred HcCCEEEcCCeeeEEEEc-CCcceEE-Eec-CCc--cccCC-EEEEcCCHHHHHHh
Confidence 457799999999999987 3444332 222 454 46674 68887665555554
No 475
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=29.00 E-value=80 Score=38.40 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCcccEEEECC-CchHHHHHHHHhccCCCeEEEEecc
Q psy11618 160 GDCFDIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 160 ~~~YDYIIVGG-GTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
.+.+-+.|+|| |.+|..+.+.|++.|+.+|..+-+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~ 72 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD 72 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh
Confidence 35568899998 9999999999999899998887553
No 476
>KOG0404|consensus
Probab=28.96 E-value=51 Score=38.10 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=28.0
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-.++|||+|+|+-++|-..+++ ..|-++-|-+-
T Consensus 9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~~ 41 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGMM 41 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc-ccCceEEeeee
Confidence 3689999999999999998864 78888888664
No 477
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=28.84 E-value=60 Score=37.57 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=26.3
Q ss_pred EEECCCchHHHHHHHHhccCCC-eEEEEeccCC
Q psy11618 166 IIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD 197 (1381)
Q Consensus 166 IIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~d 197 (1381)
.|||+|..|..+|..++.+ +. +|.++|.-++
T Consensus 2 ~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 2 SIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred EEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 6999999999999999965 43 9999998753
No 478
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=28.67 E-value=64 Score=38.70 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.7
Q ss_pred EEEECCCchHHHHHHHHhccCC--------CeEEEEec
Q psy11618 165 IIIVGASAAGCVLANRLSEVSS--------LKVLLIEA 194 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg--------~sVLVLEA 194 (1381)
+.|+|+|.-|.++|..++++ + ++|.+-.+
T Consensus 2 I~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 2 VAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 67999999999999999986 5 77777655
No 479
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=28.62 E-value=1.4e+02 Score=36.75 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~ 198 (1381)
-|+||||||.+|.++|.+|+++ |++|+|+|+.+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 4899999999999999999975 9999999988643
No 480
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.41 E-value=61 Score=39.58 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=27.8
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+.|||.|..|...|.+|+++ |++|.+.+.-+
T Consensus 6 I~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred EEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 78999999999999999976 89999998654
No 481
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=28.36 E-value=68 Score=36.91 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.0
Q ss_pred CCcccEEEECCCchHHHHHHHHhcc
Q psy11618 160 GDCFDIIIVGASAAGCVLANRLSEV 184 (1381)
Q Consensus 160 ~~~YDYIIVGGGTAG~VLAsRLSEd 184 (1381)
.+...+.|||+|..||-+|..|++.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~ 33 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARL 33 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHc
Confidence 3457899999999999999999974
No 482
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=28.36 E-value=60 Score=40.75 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
+-|||+|+-|+-+|.+++.+ |++|.+.|+-++
T Consensus 10 V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 68999999999999999965 999999987754
No 483
>PRK10537 voltage-gated potassium channel; Provisional
Probab=28.26 E-value=59 Score=39.67 Aligned_cols=31 Identities=23% Similarity=0.109 Sum_probs=27.4
Q ss_pred ccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194 (1381)
Q Consensus 163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA 194 (1381)
=.+||+|.|.-|..++++|.++ +.+|.++|.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~-g~~vvVId~ 271 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR-GQAVTVIVP 271 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC-CCCEEEEEC
Confidence 3599999999999999999875 789999994
No 484
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=28.24 E-value=62 Score=38.42 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.8
Q ss_pred EEEECCCchH-----HHHHHHHhccCCCeEEEEe
Q psy11618 165 IIIVGASAAG-----CVLANRLSEVSSLKVLLIE 193 (1381)
Q Consensus 165 YIIVGGGTAG-----~VLAsRLSEdpg~sVLVLE 193 (1381)
++|+||||+| .++|.+|.+ +|++|..+-
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~-~g~~v~~vg 36 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKE-DNWDISYIG 36 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 6899999999 568889886 589999983
No 485
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=28.23 E-value=58 Score=42.57 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=28.9
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-+.|||+|+-|+-+|...+.+ |++|.+.|.-++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 378999999999999999965 999999997653
No 486
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=28.11 E-value=1.2e+02 Score=38.35 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------c-------CCeEEEEecCcEEEEcCCchhhHHHHHH-cCC
Q psy11618 376 RTNLYVLKRSKVTKVIINDQNVATGVEYVN-------S-------KGETVRVTANKEVILTAGAIANAQLLLL-SGI 437 (1381)
Q Consensus 376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-------~-------~Gr~~tV~ArKEVILSAGAI~SPqLLml-SGI 437 (1381)
+.++++.+++.+++|.-++++++ ||++.. . +|+++++.++ .||+|.|....++++.. +|+
T Consensus 317 ~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~~~~gl 391 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLESVPGV 391 (564)
T ss_pred HcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhhhccCc
Confidence 46899999999999976544444 876532 1 2345678885 79999997666666653 444
No 487
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=28.06 E-value=68 Score=37.63 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=25.8
Q ss_pred EEEECCCchHHHHHHHHhccCCC-eEEEEec
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSL-KVLLIEA 194 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~-sVLVLEA 194 (1381)
+.|||+|..|+.+|..+++. |. +|.++|.
T Consensus 4 V~VIGaG~vG~~iA~~la~~-g~~~VvlvDi 33 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEK-ELADLVLLDV 33 (305)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 67999999999999999976 43 7999998
No 488
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.04 E-value=1e+02 Score=31.32 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.5
Q ss_pred EEEECC-CchHHHHHHHHhccCCCe-EEEEeccCCC
Q psy11618 165 IIIVGA-SAAGCVLANRLSEVSSLK-VLLIEAGGDT 198 (1381)
Q Consensus 165 YIIVGG-GTAG~VLAsRLSEdpg~s-VLVLEAG~d~ 198 (1381)
+.|+|+ |..|..+++.+.++++.+ |..+++.+++
T Consensus 3 V~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~ 38 (124)
T PF01113_consen 3 VGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA 38 (124)
T ss_dssp EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST
T ss_pred EEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc
Confidence 689999 999999999999988887 7888888743
No 489
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=27.97 E-value=1.5e+02 Score=35.49 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=23.2
Q ss_pred ccEEEECCCchH-HHHHHHHhc---cCCCeEEEEeccCCC
Q psy11618 163 FDIIIVGASAAG-CVLANRLSE---VSSLKVLLIEAGGDT 198 (1381)
Q Consensus 163 YDYIIVGGGTAG-~VLAsRLSE---dpg~sVLVLEAG~d~ 198 (1381)
.=+.|.|-|..| +++|..||. +.|+||+++++-+..
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 344556777666 444555542 248999999987654
No 490
>PRK06701 short chain dehydrogenase; Provisional
Probab=27.93 E-value=1.2e+02 Score=34.52 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.6
Q ss_pred cEEEECC-CchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGG-GTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
-++|.|| |--|..+|.+++++ |.+|.++-+..
T Consensus 48 ~iLItGasggIG~~la~~l~~~-G~~V~l~~r~~ 80 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKE-GADIAIVYLDE 80 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3788885 66799999999986 89998886653
No 491
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=27.62 E-value=78 Score=32.26 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=27.0
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.+.|+|+|..|..+|.++++..+.+|.+..+.+
T Consensus 21 ~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 21 KVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 579999999999999999875347788886643
No 492
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=27.51 E-value=64 Score=40.24 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=27.8
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+-|||+|+-|+..|.+++++ |++|.+.++-+
T Consensus 7 IavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 7 AACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 67999999999999999975 89999998754
No 493
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=27.49 E-value=64 Score=41.94 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=28.5
Q ss_pred cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
+--+.|||+|+-||.+|..|+...=.++.+++.|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 45689999999999999999976334677877774
No 494
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=27.43 E-value=61 Score=42.41 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
-+.|||+|+-|+-+|..++.+ |.+|.+.|.-++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 479999999999999999965 999999998754
No 495
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=27.32 E-value=40 Score=44.14 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=72.8
Q ss_pred CCCcccceeecccCC--CCcceeeeccccccccCCCcccchhhccccCCCCccchhhhheecCCCCeEEEEEEeeeceee
Q psy11618 49 PNFEYDQLLFSYVSP--KDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEK 126 (1381)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~ 126 (1381)
|+-+||..+-|.+=+ |+.-.-++....-|+|.- ++..+.+++...|.+.+. .++...+.++|.=+=. .+
T Consensus 39 p~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~-----i~L~~~~~v~~idr~~k~--V~t~~g~~~~YDkLil--AT 109 (793)
T COG1251 39 PRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG-----ITLYTGEKVIQIDRANKV--VTTDAGRTVSYDKLII--AT 109 (793)
T ss_pred CCccccceeeccccCCCccHHHHhccchhhHHHcC-----cEEEcCCeeEEeccCcce--EEccCCcEeecceeEE--ec
Confidence 667788777776643 444444444444444443 667778888888888874 3455555544432211 22
Q ss_pred cCCCCCCChhhhh---hhhccccccCCCCCCcccCCCCccc-EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618 127 CPDFWPYPRLEKE---RYNIYRSVIYPPDMTPYVKSGDCFD-IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197 (1381)
Q Consensus 127 ~~~~wp~p~l~~~---~~~~~~~~~~p~~~~~~~~~~~~YD-YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d 197 (1381)
.+.+|-.| .+.. ....||.++--..+-.. .++.. .+|||||-=|.-+|.-|-+ .|..|-|+|--+.
T Consensus 110 GS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~---ar~~~~avVIGGGLLGlEaA~~L~~-~Gm~~~Vvh~~~~ 179 (793)
T COG1251 110 GSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDC---ARNKKKAVVIGGGLLGLEAARGLKD-LGMEVTVVHIAPT 179 (793)
T ss_pred CccccccC-CCCCCCCCeeEEecHHHHHHHHHH---HhccCCcEEEccchhhhHHHHHHHh-CCCceEEEeecch
Confidence 22223222 1111 11112222200000000 01111 5999999999999999985 4888988887653
No 496
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=26.98 E-value=99 Score=36.75 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=30.7
Q ss_pred CCCcccEEEECC-CchHHHHHHHHhccCCCeEEEEeccC
Q psy11618 159 SGDCFDIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG 196 (1381)
Q Consensus 159 ~~~~YDYIIVGG-GTAG~VLAsRLSEdpg~sVLVLEAG~ 196 (1381)
.++.-.++|.|| |--|..+|++|.++ |++|..+.+.+
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAE-GHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEecc
Confidence 334456899998 99999999999986 89999998764
No 497
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=26.93 E-value=70 Score=38.66 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=28.0
Q ss_pred cccEEEECCCchHHH--HHHHHhc-cCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCV--LANRLSE-VSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~V--LAsRLSE-dpg~sVLVLEAG~ 196 (1381)
+.|+||+|.|++|.. +|..+.| +|+.||..+|.-+
T Consensus 216 ~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~ 253 (368)
T PLN02556 216 QVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAE 253 (368)
T ss_pred CCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 689999999999955 5666765 3788999999843
No 498
>PLN03013 cysteine synthase
Probab=26.83 E-value=73 Score=39.52 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=28.4
Q ss_pred cccEEEECCCchHHH--HHHHHhc-cCCCeEEEEeccC
Q psy11618 162 CFDIIIVGASAAGCV--LANRLSE-VSSLKVLLIEAGG 196 (1381)
Q Consensus 162 ~YDYIIVGGGTAG~V--LAsRLSE-dpg~sVLVLEAG~ 196 (1381)
+.|+||+|.|++|.. +|..+.| +|+.+|..+|.=+
T Consensus 280 ~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~g 317 (429)
T PLN03013 280 KVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTE 317 (429)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCC
Confidence 589999999999954 6677766 4788999999844
No 499
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=26.61 E-value=71 Score=39.92 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618 164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD 197 (1381)
Q Consensus 164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d 197 (1381)
.+.|||+|-.|.+.|..+|+. .+++|..+|..++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 478999999999999999986 3688999987653
No 500
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=26.49 E-value=60 Score=37.10 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=25.3
Q ss_pred EEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618 165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195 (1381)
Q Consensus 165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG 195 (1381)
+-|||.|..|..+|.+++++ |++|.+.++.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~ 31 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIG 31 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 56899999999999999975 7888876544
Done!