RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11618
(1381 letters)
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 396 bits (1019), Expect = e-124
Identities = 140/628 (22%), Positives = 218/628 (34%), Gaps = 102/628 (16%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP-----IHSRIPGMSSVLSLSEFD 217
FD +IVG AG +A RL+E ++ VL++EAG P I P + L S++D
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEIT--TPSSAMDLRNSKYD 64
Query: 218 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 277
AY T GK LGGSS++ + G ++ + + G W +
Sbjct: 65 WAYKTTMV--RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 278 DETLKYFVKSEDYR--SVIYNESKAVHGTQGYLPVGLFKNK-ENNIIREIFETSAQELGY 334
D + Y KS Y +Y+ G G +P+ + E RE + + +G
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182
Query: 335 PCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 394
P +++ D G G R + + N+ ++ ++IIN+
Sbjct: 183 PLIENIYD-GEMDGLTHCCDTIYRGQRSGSFLF-----VKNKPNITIVPEVHSKRLIINE 236
Query: 395 QN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
+ GV V + G + A++EVIL+ G +LL+LSGIGP L I D
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 454 LR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCY 506
R VG+NL + L+ +V Y NR GP+ +
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLE-- 354
Query: 507 CLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPL 566
++ F + + K R
Sbjct: 355 -------------------------------LVGF-------PRIDKYLEKDAEYRKAKA 376
Query: 567 SNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNK 626
+N G F+ P + H F Q +
Sbjct: 377 ANGGKDPFS-----------PLGQPHFELDF------------VCMFGTAFQWHFPTPKT 413
Query: 627 RTDMGVISMSLVNPKS-CGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR--L 683
+ V+ + P S G+VTL SADP P I+ + D+ + G + L
Sbjct: 414 GDHLTVVVDLV-RPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIR-FSYDLL 471
Query: 684 EQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNA 743
+ E + + + S + T +P GT + +
Sbjct: 472 FKGEGFKDLVESEYPWEMPL------DSDKEMHRAVLDRCQTAFHPTGTARLS-KNIDQG 524
Query: 744 VVTPDLKVKGIKGLRVADISVLPNAIIT 771
VV P LKV GIK LRVAD SV+P I
Sbjct: 525 VVDPKLKVHGIKKLRVADASVIPI-IPD 551
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 327 bits (841), Expect = 1e-98
Identities = 94/367 (25%), Positives = 148/367 (40%), Gaps = 39/367 (10%)
Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 215
+G +D II G G +A +L+E +KVL+IE G + P + +
Sbjct: 21 AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80
Query: 216 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 274
D YL P + R I AGKGLGGS+ + + R +++ K+ G G
Sbjct: 81 VDQNYLTVP----LINNR--TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEG 134
Query: 275 WGYDETLKYFVKSEDYR-------SVIYNESKAVHGTQGYLPVGLFKN-KENNIIREIFE 326
W +D +Y K+E R + ++ + HGT G + G N + + I +
Sbjct: 135 WNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALM 194
Query: 327 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 385
+ LG P +D G + + + +R AA A+L P +R+NL +L
Sbjct: 195 NTVSALGVPVQQDFL-CGHPRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTGQ 252
Query: 386 KVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 442
V KV+ A GV + +K V A EV+L AG+ + +L SGIG K+
Sbjct: 253 MVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 443 LDEVKIPVKQDLRVGENL----------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLV 492
LD+ + DL VG N+ + ++ G A E Y
Sbjct: 313 LDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANF-----TETFGDYAP 367
Query: 493 NRIGPLS 499
L+
Sbjct: 368 QARDLLN 374
Score = 156 bits (398), Expect = 5e-40
Identities = 47/274 (17%), Positives = 81/274 (29%), Gaps = 41/274 (14%)
Query: 509 AHLDEVKIPVKQDLRVGENL----------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKY 558
+ LD+ + DL VG N+ + ++ G A E Y
Sbjct: 311 SVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANF-----TETFGDY 365
Query: 559 LVNRIGPL-SNAGLW-SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDE 616
L + W T N ++ +N + +
Sbjct: 366 APQARDLLNTKLDQWAEETVARGGFHNVTALKVQYE---NYRNWLLD------------- 409
Query: 617 VQTAYVNLNKRTDMGV-ISMSLVNPKSCGKVTLKSADPL-APPCIDTGILSEPEDLATLI 674
A+ L T+ + + + P + G V + S+DP D DL
Sbjct: 410 EDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQA 469
Query: 675 RGTDYITRLEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTV 733
+ L A+ G + + + W+ Y+ + V +
Sbjct: 470 AASKLARDLTSQGAMKEYFAGETLP----GYNLVQNATLSQWSDYVLQNFRPNWHAVSSC 525
Query: 734 MMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN 767
M + + VV KV G +GLRV D S+ P
Sbjct: 526 SMM-SRELGGVVDATAKVYGTQGLRVIDGSIPPT 558
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 317 bits (814), Expect = 5e-95
Identities = 90/320 (28%), Positives = 135/320 (42%), Gaps = 27/320 (8%)
Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP-----IHSRIPGMSSVLSL 213
SG D II G G A RL+E ++ VL+IE+G I +
Sbjct: 16 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIE--DLNAYGDIFG 73
Query: 214 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 272
S DHAY + I +G GLGGS+ V + R +++ + G
Sbjct: 74 SSVDHAYETVE---LATNNQ--TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGN 128
Query: 273 NGWGYDETLKYFVKSEDYRSVIYNESK-------AVHGTQGYLPVGLFK-NKENNIIREI 324
GW +D Y +++E R+ + + HG G + G + + I +
Sbjct: 129 EGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 188
Query: 325 FETSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLK 383
++ ++ G P KD G + P + +R AA +L P +R NL VL
Sbjct: 189 LMSAVEDRGVPTKKDFG-CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLT 246
Query: 384 RSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK 440
V KV+++ A GVE+ KG T V A EV+L AG+ + +L SGIG K
Sbjct: 247 GQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMK 306
Query: 441 AHLDEVKIPVKQDLRVGENL 460
+ L+ + I DL VG NL
Sbjct: 307 SILEPLGIDTVVDLPVGLNL 326
Score = 144 bits (365), Expect = 7e-36
Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 35/271 (12%)
Query: 509 AHLDEVKIPVKQDLRVGENL------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNR 562
+ L+ + I DL VG NL + ++ T +++
Sbjct: 307 SILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAH 366
Query: 563 IGPLSNAGLWSFT-----GYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEV 617
+ W+ G+ +T + + + + +++
Sbjct: 367 ELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWI------------VNHNVAYSELF 414
Query: 618 QTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADP-LAPPCIDTGILSEPEDLATLIRG 676
+ + + P + G V + DP L D DL
Sbjct: 415 LDTA-------GVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAA 467
Query: 677 TDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMG 736
T + + A++ + + +WT YI + + VGT M
Sbjct: 468 TQLARNISNSGAMQTYFAGET---IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMM 524
Query: 737 NADDPNAVVTPDLKVKGIKGLRVADISVLPN 767
+ VV +V G++GLRV D S+ P
Sbjct: 525 -PKEMGGVVDNAARVYGVQGLRVIDGSIPPT 554
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 306 bits (785), Expect = 3e-91
Identities = 102/366 (27%), Positives = 157/366 (42%), Gaps = 35/366 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTPIHSRIP-GMSSVLSLSEFDHA 219
FD ++VGA AG V+A RL+E + VL++EAG + + + P ++ S FD
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 278
Y AG R I G+ LGGSS+V ++ RG++ D++ +A + G GW +D
Sbjct: 63 YTTTAQ--AGYNGR--SIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118
Query: 279 ETLKYFVKSEDY------RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 332
++ K+E + AVHGT G + + L + + + QE
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQ 176
Query: 333 GYPCPK--DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 390
DM +G + G R S++ AYL P A R NL VL ++VTK+
Sbjct: 177 SEEFFFNPDMG-TGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKL 234
Query: 391 IINDQN------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
+ + T V A KEV+L+AG++ LL LSGIG + L
Sbjct: 235 VNSGTTNGLPAFRCVEYAE-QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 445 EVKIPVKQDLR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGP 497
V I + VG NL L A F F + + + ++ R GP
Sbjct: 294 SVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQT-FDNIFRDSSEFNVDLDQWTNTRTGP 352
Query: 498 LSNMHS 503
L+ + +
Sbjct: 353 LTALIA 358
Score = 160 bits (407), Expect = 3e-41
Identities = 65/277 (23%), Positives = 99/277 (35%), Gaps = 43/277 (15%)
Query: 509 AHLDEVKIPVKQDLR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVN 561
L V I + VG NL L A F F + + + ++
Sbjct: 290 NDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQT-FDNIFRDSSEFNVDLDQWTNT 348
Query: 562 RIGPLS----NAGLW----SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDF 613
R GPL+ N W S + T + A H F
Sbjct: 349 RTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETI----------------F 392
Query: 614 NDEVQTAYVNLNKRTDMG---VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDL 670
+++ + R D G ++ +L++P + G + L +++P P I+ LS D+
Sbjct: 393 SNQ---WFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDI 449
Query: 671 ATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPV 730
T+I+ R +A L + + YIR T +PV
Sbjct: 450 FTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDPT-----DDAAIESYIRDNANTIFHPV 504
Query: 731 GTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN 767
GT M VV PDLKVKG+ GLR+ D S+LP
Sbjct: 505 GTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPF 541
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 292 bits (750), Expect = 1e-86
Identities = 85/308 (27%), Positives = 132/308 (42%), Gaps = 24/308 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIP-GMSSVLSLSEFDHAY 220
FD I+VG +AG +A RLSE ++ V L+EAG D + + L S +D Y
Sbjct: 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN-FAKLGYNGWGYDE 279
EP N+ ++ K +GG S+ + + D + AK G GW +
Sbjct: 74 PIEPQ--ENG---NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 339
+ + E HG G + + + + ++ G P K
Sbjct: 129 AWPLYKRLETNE--DAGPDAPHHGDSGPVHLM--NVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 340 MNDRYVDVGFAELPGM-----TRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 394
V G G R S++ +Y+ P ++ N +L + +++ +
Sbjct: 185 NTGTTVVNGA----NFFQINRRADGTRSSSSVSYIHP-IVEQENFTLLTGLRARQLVFDA 239
Query: 395 QNVATGVEYV-NSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
TGV+ V ++ G T R+TA EV+L+ GAI +LL+LSGIGP AHL E I V D
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299
Query: 454 LR-VGENL 460
VGE+L
Sbjct: 300 SPGVGEHL 307
Score = 131 bits (332), Expect = 8e-32
Identities = 66/269 (24%), Positives = 98/269 (36%), Gaps = 60/269 (22%)
Query: 509 AHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQ---EMVFKYLVNRIG 564
AHL E I V D VGE+L Q E V ++ +
Sbjct: 287 AHLAEHGIEVLVDSPGVGEHL-----------------------QDHPEGVVQFEAKQPM 323
Query: 565 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNL 624
+ W + T RPDL +H + M ++ Y + + N+
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMH---YGSVPFD-MNTLRHGYPTTENGFSLTPNV 379
Query: 625 NKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITR 682
+S G V L+S D P +D ++PE D+ ++ G
Sbjct: 380 TH-------------ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKARE 426
Query: 683 LEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHS---WTCYIRHLTTTTSNPVGTVMMGNA 738
+ A+ G L P + YIR T +PVGTV MG
Sbjct: 427 IAAQPAMAEWTGREL----------SPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAV 476
Query: 739 DDPNAVVTPDLKVKGIKGLRVADISVLPN 767
+D + + P+L+VKG+ GLRVAD SV+P
Sbjct: 477 EDEMSPLDPELRVKGVTGLRVADASVMPE 505
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 288 bits (739), Expect = 2e-85
Identities = 96/301 (31%), Positives = 137/301 (45%), Gaps = 16/301 (5%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 221
DI+IVG +AG +LA RLSE +VLLIEAG T P L +D Y
Sbjct: 18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 280
E AG R G+ +GGSS + + Y RG D++ + G WG+DE
Sbjct: 78 TEAQ--AGTAGR--AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133
Query: 281 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 340
L F ED+ +HG G LP+ E + + F + LG P +
Sbjct: 134 LPVFQAIEDH----PLGGDGIHGKGGPLPIH-LPADEVSPLARAFIEAGASLGLPRLEGH 188
Query: 341 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 400
N +G R G R +AADA+LT R NL +L S+V ++ + + N
Sbjct: 189 N-SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL-EGNQVRS 246
Query: 401 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGEN 459
+E V + + V A +++L AGA+ + LL+ SGIGP LD + D+ +G N
Sbjct: 247 LEVV-GRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRN 304
Query: 460 L 460
L
Sbjct: 305 L 305
Score = 128 bits (325), Expect = 4e-31
Identities = 49/273 (17%), Positives = 75/273 (27%), Gaps = 65/273 (23%)
Query: 509 AHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQ----EMVFKYLVNRI 563
LD + D+ +G NL Q Y +
Sbjct: 285 DVLDAAGVGCLIDMPDIGRNL-----------------------QDHLLGAGNLYAARKP 321
Query: 564 GPLSNAGLWSFTGYI--DTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAY 621
P S Y+ D+ +P++ + V
Sbjct: 322 VPPSRLQHSESMAYMRADSFTAAGQPEIVVGCG----------------------VAPIV 359
Query: 622 VNLNKRTDMG---VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTD 678
G + + +P S G V + + ID L D R
Sbjct: 360 SESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRA-- 417
Query: 679 YITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNA 738
LE + I L S +I T +P GT MG
Sbjct: 418 ----LEASRTI-GHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGK- 471
Query: 739 DDPNAVVTPDLKVKGIKGLRVADISVLPNAIIT 771
DP+AVV +L++K + L V D S++PN +
Sbjct: 472 -DPDAVVDANLRLKALDNLFVVDASIMPN-LTA 502
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 281 bits (721), Expect = 1e-82
Identities = 83/384 (21%), Positives = 129/384 (33%), Gaps = 61/384 (15%)
Query: 151 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSS 209
P + S +D IIVGA G + A+RLSE + KVLL+E GG T
Sbjct: 1 PTV-----SATPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPW 54
Query: 210 VLS--LSEFDH-----AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSY 262
S L++FD + + + + I + AG +GG ++V LY
Sbjct: 55 ATSSGLTKFDIPGLFESLFTDSN--PFWWCK--DITVFAGCLVGGGTSVNGALYWYPNDG 110
Query: 263 DYENFAKLGYNGW--GYDETLKYFVKSEDY-RSVIYNESKAVHGTQGYLPVGLFKNKENN 319
D+ GW + Y K S + T G + + N
Sbjct: 111 DFS-----SSVGWPSSWTNHAPYTSKLSSRLPSTDH------PSTDGQRYL----EQSFN 155
Query: 320 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNL 379
++ ++ + Q D + Y D F G R YL A R N
Sbjct: 156 VVSQLLK--GQGYNQATINDNPN-YKDHVFGYSAFDFLNGKRAGPVATYLQT-ALARPNF 211
Query: 380 YVLKRSKVTKVIINDQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSG 436
V+ V+ + + GV+ + + VT VIL+AGA +++L SG
Sbjct: 212 TFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSG 270
Query: 437 IGPKAHLDEVKIPVKQDLR-----------VGENL----KLNAQF--TGPVMAFSAPLKR 479
IGP + V+ VG N +N F +
Sbjct: 271 IGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVW 330
Query: 480 TVYSQEMVFKYLVNRIGPLSNMHS 503
+ +YL N+ G +
Sbjct: 331 SNPRPADAAQYLANQSGVFAGASP 354
Score = 128 bits (324), Expect = 7e-31
Identities = 35/282 (12%), Positives = 80/282 (28%), Gaps = 54/282 (19%)
Query: 509 AHLDEVKIPVKQDLR-----------VGENL----KLNAQF--TGPVMAFSAPLKRTVYS 551
+ V+ VG N +N F + +
Sbjct: 275 DMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPR 334
Query: 552 QEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAY 611
+YL N+ G + A + + + + + + +
Sbjct: 335 PADAAQYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAA-SVNSSLPYNASQ 393
Query: 612 DFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLA 671
F T V L+ +S G++ + +A + L P D
Sbjct: 394 IF-----TITVYLSTG------------IQSRGRIGIDAALR--GTVLTPPWLVNPVDKT 434
Query: 672 TLIRGTDYITR-LEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNP 729
L++ + + + + ++ + T +++
Sbjct: 435 VLLQALHDVVSNIGSIPGLTMITPD-------------VTQTLEEYVDAYDPATMNSNHW 481
Query: 730 VGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIIT 771
V + +G + +AVV ++KV G L + D ++P+ + T
Sbjct: 482 VSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPH-LPT 521
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 257 bits (658), Expect = 2e-74
Identities = 77/305 (25%), Positives = 119/305 (39%), Gaps = 43/305 (14%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
+D +IVG +GC LA LSE KVL++E G + + + + +
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 223 EPSQFA-GLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
+F G+ N R G+ LGG+S + +Y R + Y W D
Sbjct: 85 PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGV----DWDMDLVN 135
Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
+ + ED ++ + F + + +
Sbjct: 136 QTYEWVEDTI--------VYKPNSQSW---------QSVTKTAFLEAGVHPNH----GFS 174
Query: 342 DRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--NVA 398
+ + G + G T AAD L G NL V + V K+I ++ A
Sbjct: 175 LDHEE-GTR-ITGSTFDNKGTRHAADELLNK--GNSNNLRVGVHASVEKIIFSNAPGLTA 230
Query: 399 TGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR- 455
TGV Y +S G V + EVI++AG I QLLLLSG+GP+++L + IPV
Sbjct: 231 TGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPY 290
Query: 456 VGENL 460
VG+ L
Sbjct: 291 VGQFL 295
Score = 121 bits (306), Expect = 1e-28
Identities = 45/266 (16%), Positives = 77/266 (28%), Gaps = 55/266 (20%)
Query: 509 AHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLS 567
++L + IPV VG+ L N P + + +V +G +S
Sbjct: 275 SYLSSLNIPVVLSHPYVGQFLHDN-----PRNFINILPPNPIEP------TIVTVLG-IS 322
Query: 568 NAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR 627
N + +
Sbjct: 323 NDFYQCSFSSLP------FTTPPFGFF------------------------PSSSYPLPN 352
Query: 628 TDMGVISMSLVNPKSCGKVTLK-SADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT 686
+ + + P S G +TLK S++ P + S DL+ + G I L T
Sbjct: 353 STFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLST 412
Query: 687 EAI-RLAGGTLMSLNLEACSQYPWR----STHSWTCYIRHLTTTTSNPVGTVMMGNADDP 741
+A+ L + P ++ + R + + G ++G
Sbjct: 413 DALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG----- 467
Query: 742 NAVVTPDLKVKGIKGLRVADISVLPN 767
V+ D +V GI LRV D S P
Sbjct: 468 -KVLDGDFRVTGINALRVVDGSTFPY 492
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 123 bits (309), Expect = 6e-29
Identities = 96/673 (14%), Positives = 162/673 (24%), Gaps = 177/673 (26%)
Query: 150 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSS 209
P M +D++IVG+ GC A L + KV + + G I S + +
Sbjct: 40 VPGMDI------KYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIG---EIDSGLKIGAH 89
Query: 210 VLS-------LSEFDHAYLAEPSQFA-------------------GLGVRNARIKIT--- 240
+ + +F + + + VRN
Sbjct: 90 KKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPL 149
Query: 241 -------AGKGLGGSSAVQNILYQRGT-SYDYENFAKLGYNGWG--YDETLKYFVKSEDY 290
+ +GG S + T +D E L + E + + K+E Y
Sbjct: 150 RNLSGQAVTRVVGGMS----TAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESY 205
Query: 291 RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFA 350
T IR + Y R
Sbjct: 206 -----------FQTGTDQFKE--------SIRHNLVLNKLTEEYK-----GQRDFQQIPL 241
Query: 351 ELPGMTRYGLRFSAADAYLT-----PIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYV 404
+ + +S+A+ + +V+ N N +
Sbjct: 242 AATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIH 301
Query: 405 NSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLN 463
+ G+ + A +LTAGA+ N QLL+ SG G + P +G +
Sbjct: 302 DLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYI--- 356
Query: 464 AQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLR 523
S +C +
Sbjct: 357 -------TE-----------------------------QSLVFCQTVMST---------E 371
Query: 524 VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQN 583
+ +++K + G YS N+ N + ++ Q
Sbjct: 372 LIDSVKSDMTIRG-------TPGELTYSVTYTPGASTNKHPDWWNEKVK---NHMMQHQE 421
Query: 584 TARP----DLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVN 639
P D E + Q +I R F+ ++ D +
Sbjct: 422 DPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDA-FSYGAVQQSIDSRLIVDWRFFGRTEPK 480
Query: 640 PKSCGKVTLKSADPLAPPCID-TGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMS 698
++ + K D P + GG L
Sbjct: 481 EENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMT-----DMCVMSAKIGGFL-- 533
Query: 699 LNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDP---NAVVTPDLKVKGIK 755
P HL GT MG D N V D +V G K
Sbjct: 534 -----PGSLPQFMEPGLVL---HL-------GGTHRMG--FDEKEDNCCVNTDSRVFGFK 576
Query: 756 GLRVADISVLPNA 768
L + +P A
Sbjct: 577 NLFLGGCGNIPTA 589
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 114 bits (286), Expect = 2e-26
Identities = 59/355 (16%), Positives = 109/355 (30%), Gaps = 70/355 (19%)
Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLS-L 213
+G +++G V A RL E + ++ L++E G P + GM +
Sbjct: 2 NGGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRS 60
Query: 214 SEFDHAYLAEPSQFAGLGVRNAR---------------IKITAGKGLGGSSAVQNILYQR 258
S F + A F L V N + + G+G+GG S V +
Sbjct: 61 SWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 120
Query: 259 GTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 318
+E E + + + ++ F++ E
Sbjct: 121 PKRSYFEEIL----PRVDSSEMYDRY----------FPRANSMLRVNHIDT-KWFEDTEW 165
Query: 319 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAE-----------LPGMTRYGLR---FSA 364
+ A + G D G+ + L YG S
Sbjct: 166 YKFARVSREQAGKAGLGT--VFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSL 223
Query: 365 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGVEYVNSKGETV--RVTANKEVIL 421
YL A + + +V + A VE ++ G+ + + + + + L
Sbjct: 224 DKTYL-AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFL 282
Query: 422 TAGAIANAQLLLLSGI-GPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSA 475
AG++ + +LL+ + G +L+ VG N G +M A
Sbjct: 283 GAGSLGSTELLVRARDTGTLPNLNS---------EVGAGWGPN----GNIMTARA 324
Score = 49.7 bits (118), Expect = 5e-06
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 709 WRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNA 768
+R T +P+G ++G +V G K L V D S++P +
Sbjct: 423 YRYDLFGTQLKAFADDFCYHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGS 476
Query: 769 I 769
+
Sbjct: 477 V 477
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 106 bits (264), Expect = 9e-24
Identities = 64/369 (17%), Positives = 111/369 (30%), Gaps = 69/369 (18%)
Query: 153 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTP----------- 199
GD +++G+ G V A RL++ + + ++E G DTP
Sbjct: 3 SRTL-ADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGML 60
Query: 200 ------IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAV-Q 252
+ V + F + R + IK+ G+G+GG S V
Sbjct: 61 NPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNG 120
Query: 253 NILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGL 312
+ +E + KYF ++ G
Sbjct: 121 GMAV-TPKRNYFEEILPS---VDSNEMYNKYFPRAN-----------TGLGVNNIDQ-AW 164
Query: 313 FKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR------------YGL 360
F++ E +AQ G+ N + E G
Sbjct: 165 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG 224
Query: 361 RFSAADAYLTPIAGKRTNLYVLKRSKVTKVII-NDQNVATGVEYVNSKGETVR---VTAN 416
+ S YL A L + +VTKV + +E ++ +G V VTA
Sbjct: 225 KKSLDKTYL-AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTA- 282
Query: 417 KEVILTAGAIANAQLLLLSGI-GPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSA 475
V AG++ ++LL+ G +L +VGE N ++ +
Sbjct: 283 DRVFFAAGSVGTSKLLVSMKAQGHLPNLSS---------QVGEGWGNNGNI---MVGRAN 330
Query: 476 PLKRTVYSQ 484
+ S+
Sbjct: 331 HMWDATGSK 339
Score = 44.4 bits (104), Expect = 3e-04
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 725 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAI 769
T +P+G V++ ++ GL V D S++P +
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNV 482
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma membrane;
HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 58.1 bits (139), Expect = 1e-08
Identities = 51/342 (14%), Positives = 113/342 (33%), Gaps = 2/342 (0%)
Query: 795 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 854
L L+ ILP + + F + + + L+ L + + L +
Sbjct: 83 SLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIAN 142
Query: 855 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL--FLFLLLFLLLLFLILPLFLLLFLF 912
+ + +++ + +L L + + LLL + + + L + +
Sbjct: 143 SYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSL 202
Query: 913 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 972
+ L L+ L+F + L+ + L +L L L++ L +F +
Sbjct: 203 NFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKIN 262
Query: 973 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1032
++ L+F+ + + L L L F + + + +
Sbjct: 263 FYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNT 322
Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1092
+ +F+ + +L+F+ + +LL LL L L F+ L L + +
Sbjct: 323 IDPEVFMQRISSSVLVFILSFIGFILLCKDHKSMLLALPMLALGFMALRAGLRFTIYAVP 382
Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1134
++ F + L L + LIL F +
Sbjct: 383 VMALGFGYFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSIS 424
Score = 47.4 bits (111), Expect = 4e-05
Identities = 39/335 (11%), Positives = 100/335 (29%), Gaps = 2/335 (0%)
Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
+ +L+ L ++ F L + F ++
Sbjct: 13 IKYTCILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFH 72
Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
L L+ ILP + + F + + + L+ L +
Sbjct: 73 QPNDLSYFGSSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGF 132
Query: 1133 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL--FLFLLLFLLLLFLI 1190
+ L + + + +++ + +L L + + LLL + + +
Sbjct: 133 IAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIY 192
Query: 1191 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1250
L + + + L L+ L+F + L+ + L +L L L++ L
Sbjct: 193 LWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFA 252
Query: 1251 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1310
+F + ++ L+F+ + + L L L F + +
Sbjct: 253 IFAFKEEKINFYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFN 312
Query: 1311 FLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSF 1345
+ + + +F+ + + + +L +
Sbjct: 313 VNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFI 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-06
Identities = 86/488 (17%), Positives = 141/488 (28%), Gaps = 180/488 (36%)
Query: 211 LSLSEFDHAYLA-----------EPSQFAGLGVRNARIK------ITAGKGL--GGSSAV 251
L L+EF++ YL L IK I A + +SA
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA- 144
Query: 252 QNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVG 311
L++ + + A G G G + YF E+ R +Y Y
Sbjct: 145 ---LFRAVGEGNAQLVAIFG--GQGNTDD--YF---EELRD-LYQT---------YHV-- 182
Query: 312 LFKNKENNIIREIFETSAQELGY--PCPKDMNDRY---VDV-GFAELPGMTRYGLRFSAA 365
++ ++ + SA+ L D + +++ + E P T
Sbjct: 183 --------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-------PD 227
Query: 366 DAYLT--PIAGKRTNLYVLKRSKVT-KVIINDQNVATGVEYVNSKGETVRVTANKEVILT 422
YL PI+ + L VT K++ G KG T ++T
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLL----GFTPGELRSYLKGATGHSQG----LVT 279
Query: 423 AGAIANAQ------------LLLLSGIGPKAHLD--EVKIP---VKQDLRVGE------- 458
A AIA + +L IG + + +P ++ L E
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 459 -----------------NLKL-----------NA--QF--TGPVMA----------FSAP 476
N L N +GP + AP
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 477 LK----RTVYSQE-MVFKYLVNRIGPLSN-MHSYCYCLAHLDEVKIPVKQDLRVGENLKL 530
R +S+ + F NR P+++ HS L + +DL V N+
Sbjct: 400 SGLDQSRIPFSERKLKF---SNRFLPVASPFHS-----HLLVPASDLINKDL-VKNNVSF 450
Query: 531 NAQ---------FTGPVM-AFSAPLKRTVYSQEMVFKYLVN----------RI---GPLS 567
NA+ F G + S + + + + + V I GP
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIV--DCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 568 NAGLWSFT 575
+GL T
Sbjct: 509 ASGLGVLT 516
Score = 45.0 bits (106), Expect = 2e-04
Identities = 61/352 (17%), Positives = 105/352 (29%), Gaps = 110/352 (31%)
Query: 497 PLSNMHSYCYCLAHLD-EVKIPVKQDL-RVGENLKLNAQFTGPVMAFSAPLKRTVYSQEM 554
PL+ L+H E + V + L+ QF P + E
Sbjct: 8 PLT--------LSHGSLEHVLLVPTASFFIASQLQ--EQFN---KILPEPTEGFAADDE- 53
Query: 555 VFKYLVNRIGPLSNAGLWS-FTGYIDTL-----QNTARPDLEIHLLYFQQ-----NDI-- 601
P + A L F GY+ +L L + L F+ NDI
Sbjct: 54 ----------PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 602 -------------RNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTL 648
++ + Y TA + + D S +L G L
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNY-I-----TARIMAKRPFDKKSNS-ALFRAVGEGNAQL 156
Query: 649 --------KSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL- 699
+ D E+L L Y + + I+ + TL L
Sbjct: 157 VAIFGGQGNTDDYF-------------EELRDL--YQTYHVLVG--DLIKFSAETLSELI 199
Query: 700 --NLEACSQYPW-RSTHSWTCYIRHLTTT------TSNPVGTVMMGNADDPNAVVTPDLK 750
L+A + + W + + + T S P+ ++G + VVT K
Sbjct: 200 RTTLDAEKVFTQGLNILEW---LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT--AK 254
Query: 751 VKG---------IKGLRVADISVLPNAIITQSDAI-SFL-LLFLFLLLLFLL 791
+ G +KG ++ I ++D+ SF + + +LF +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Score = 34.6 bits (79), Expect = 0.27
Identities = 56/362 (15%), Positives = 98/362 (27%), Gaps = 134/362 (37%)
Query: 77 YEKCP---DFWPYI-KYIHEKFG----------PNFEYDQLLFSYVSPKDRVIYYNVLKT 122
Y+ D W + + +G P L + K + I N
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV----NLTIHFGGEKGKRIRENYSAM 1691
Query: 123 KYEKCPDFWPYPR-LEKERYNIYRSVIYPPD-----MTPYVKSGDCFDIIIVGASAAGCV 176
+E D + KE S + + T + A
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-------------TQPA--- 1735
Query: 177 LANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR 236
L L E ++ + L ++ G P + G SL E+ A LA + V
Sbjct: 1736 LT--LMEKAAFEDL--KSKGLIPADATFAG----HSLGEYA-A-LA-----SLADV---- 1776
Query: 237 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYN 296
+ S V+ +++ RG DE + +Y +
Sbjct: 1777 --------MSIESLVE-VVFYRG---------MTMQVAVPRDE-----LGRSNYGMI--- 1810
Query: 297 ESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG-------YPCPKDMNDRYVDVGF 349
A++ + V ++E ++ + E + G Y N +YV
Sbjct: 1811 ---AINPGR----VAASFSQE--ALQYVVERVGKRTGWLVEIVNYNVE---NQQYV---- 1854
Query: 350 AELPGMTRYGLRFSAADAYLTPIAGKRTNLY----VLKRSKVTKVIINDQNVATGVEYVN 405
AG L VL K+ K+ I + + +E V
Sbjct: 1855 ----------------------AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 406 SK 407
Sbjct: 1893 GH 1894
Score = 30.8 bits (69), Expect = 4.5
Identities = 70/470 (14%), Positives = 134/470 (28%), Gaps = 164/470 (34%)
Query: 25 FG------PYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYE 78
FG Y E +LY Y + + + L + +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLI---KFSAETLSELIRTTLDAEKV------FT 210
Query: 79 KCPDF--WPYIKYIHEKFGPNFEYDQLLFSYVS-PKDRVI-------YYNVLKTKYEKCP 128
+ + W ++ + P+ +Y LL +S P +I Y K
Sbjct: 211 QGLNILEW--LE--NPSNTPDKDY--LLSIPISCP---LIGVIQLAHYVVTAKLL----- 256
Query: 129 DFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGAS--AAGCVLANRLSEVSS 186
TP G+ + GA+ + G V A ++E S
Sbjct: 257 -----------------------GFTP----GELRS-YLKGATGHSQGLVTAVAIAETDS 288
Query: 187 -----------LKVLL---IEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGV 232
+ VL + P ++ +P S+L S ++ PS L +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYP-NTSLP--PSILEDSL-ENN-EGVPSPM--LSI 341
Query: 233 RNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLG-YNGW------GYDETLKYFV 285
N + VQ+ + + + ++ NG G ++L
Sbjct: 342 SNLTQE-----------QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 286 KS---------EDYRSVIYNESKAVHGTQGYLPVGL-F---------KNKENNIIREIFE 326
+ D + ++E K + +LPV F ++++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 327 TSAQELGYP--CPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTP-----IAGKRTNL 379
+A+++ P D +D LR ++ I
Sbjct: 450 FNAKDIQIPVYDTFDGSD-----------------LR--VLSGSISERIVDCIIRLPVKW 490
Query: 380 YVLKRSKVTKVIINDQNVATGVEYV---NSKGETVRVTANKEVILTAGAI 426
+ K T ++ A+G+ + N G VRV + AG +
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV-------IVAGTL 533
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 48.9 bits (117), Expect = 9e-06
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 381 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 432
S+V K+++ND + G + A K V+L G N +++
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMI 318
Score = 35.8 bits (83), Expect = 0.10
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 198
+++VGA +AG + + + V+L++ +GG++
Sbjct: 122 TQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFSGGNS 160
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 48.5 bits (116), Expect = 1e-05
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 352 LPGMT-RYGLRFSAAD----AYLTPIAG--KRTNLYVLKRSKVTKVIINDQNVATGVEYV 404
+ G + R + + + + N+ + ++ +V+ +D+ G+
Sbjct: 236 MGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVK 295
Query: 405 NSKGETVRVTANKEVILTAG 424
V A VIL G
Sbjct: 296 GMYKGYYWVKA-DAVILATG 314
Score = 37.7 bits (88), Expect = 0.030
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 198
D+++VG+ AG A ++ S KV+LIE GG+
Sbjct: 127 VDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVIGGNA 165
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 48.2 bits (115), Expect = 2e-05
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 338 KDMNDRYVDVGFAELPGMTRY-GLRFSAAD----AYLTPI--AGKRTNLYVLKRSKVTKV 390
M DVG + G + R + + + + S+V ++
Sbjct: 224 TSMGADMTDVGR--MGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRI 281
Query: 391 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 432
+ + TGV + A V++ AG N + +
Sbjct: 282 LEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERV 323
Score = 37.0 bits (86), Expect = 0.047
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 198
D++I+G+ AG A + + KV+L+E GG+T
Sbjct: 127 TDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIPGGNT 165
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 46.1 bits (110), Expect = 8e-05
Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 20/191 (10%)
Query: 794 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLFLLLLF 836
+L L+ F++L + +L ++ + + ++L
Sbjct: 658 FGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLG 717
Query: 837 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 896
+ ++F + + + L ++L + ++ L +F+
Sbjct: 718 GYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IFVTRSR 775
Query: 897 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 956
F+ P LL+ FL+ L+ L + I + + L ++ + L
Sbjct: 776 SWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPL 834
Query: 957 LLFLLLLFLIL 967
+F + IL
Sbjct: 835 DVFKFAIRYIL 845
Score = 46.1 bits (110), Expect = 8e-05
Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 20/191 (10%)
Query: 954 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLFLLLLF 996
+L L+ F++L + +L ++ + + ++L
Sbjct: 658 FGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLG 717
Query: 997 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1056
+ ++F + + + L ++L + ++ L +F+
Sbjct: 718 GYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IFVTRSR 775
Query: 1057 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1116
F+ P LL+ FL+ L+ L + I + + L ++ + L
Sbjct: 776 SWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPL 834
Query: 1117 LLFLLLLFLIL 1127
+F + IL
Sbjct: 835 DVFKFAIRYIL 845
Score = 46.1 bits (110), Expect = 8e-05
Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 20/191 (10%)
Query: 1114 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLFLLLLF 1156
+L L+ F++L + +L ++ + + ++L
Sbjct: 658 FGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLG 717
Query: 1157 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1216
+ ++F + + + L ++L + ++ L +F+
Sbjct: 718 GYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IFVTRSR 775
Query: 1217 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1276
F+ P LL+ FL+ L+ L + I + + L ++ + L
Sbjct: 776 SWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPL 834
Query: 1277 LLFLLLLFLIL 1287
+F + IL
Sbjct: 835 DVFKFAIRYIL 845
Score = 42.7 bits (101), Expect = 0.001
Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 21/196 (10%)
Query: 821 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLF 863
++F F+L+ L+ F++L + +L ++ + +
Sbjct: 654 IRIVFGFMLI-ALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFAT 712
Query: 864 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 923
++L + ++F + + + L ++L + ++ L +F
Sbjct: 713 GVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IF 770
Query: 924 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 983
+ F+ P LL+ FL+ L+ L + I + + L ++
Sbjct: 771 VTRSRSWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIV 829
Query: 984 LFLFLLLFLLLLFLIL 999
+ L +F + IL
Sbjct: 830 TYFPLDVFKFAIRYIL 845
Score = 42.7 bits (101), Expect = 0.001
Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 21/196 (10%)
Query: 981 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLF 1023
++F F+L+ L+ F++L + +L ++ + +
Sbjct: 654 IRIVFGFMLI-ALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFAT 712
Query: 1024 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1083
++L + ++F + + + L ++L + ++ L +F
Sbjct: 713 GVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IF 770
Query: 1084 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1143
+ F+ P LL+ FL+ L+ L + I + + L ++
Sbjct: 771 VTRSRSWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIV 829
Query: 1144 LFLFLLLFLLLLFLIL 1159
+ L +F + IL
Sbjct: 830 TYFPLDVFKFAIRYIL 845
Score = 42.7 bits (101), Expect = 0.001
Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 21/196 (10%)
Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLF 1183
++F F+L+ L+ F++L + +L ++ + +
Sbjct: 654 IRIVFGFMLI-ALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFAT 712
Query: 1184 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1243
++L + ++F + + + L ++L + ++ L +F
Sbjct: 713 GVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IF 770
Query: 1244 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1303
+ F+ P LL+ FL+ L+ L + I + + L ++
Sbjct: 771 VTRSRSWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIV 829
Query: 1304 LFLFLLLFLLLLFLIL 1319
+ L +F + IL
Sbjct: 830 TYFPLDVFKFAIRYIL 845
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 45.1 bits (106), Expect = 9e-05
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 149 YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
Y DM Y + D+++VGA +AG A +S+ +++V +IE
Sbjct: 30 YMTDMITYAE----TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 45.8 bits (109), Expect = 1e-04
Identities = 22/169 (13%), Positives = 58/169 (34%), Gaps = 26/169 (15%)
Query: 778 FLLLFLFLLLLFLLLFLFLLLFLLLL--------------FLILPL-----FLLLFLFLL 818
+ L L++ +L L + L++F+ + + P+ L LL
Sbjct: 703 EIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLL 762
Query: 819 LLFLLLFLFLLLFLLLLFL---ILPLFLLLFLFLLLLFLLLFLFLLLFLL----LLFLIL 871
+ L + ++ + + + +L L + L L+F+ + +
Sbjct: 763 GVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSSI 822
Query: 872 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 920
P + L L+ L + + + + +++F +F ++
Sbjct: 823 PSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIM 871
Score = 45.4 bits (108), Expect = 1e-04
Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)
Query: 792 LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 828
L +FL L++ +L L + L++F+ + L L L
Sbjct: 702 LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761
Query: 829 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 881
L +L + + + + + F + L L + +L+ F
Sbjct: 762 LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821
Query: 882 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 822 IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 45.4 bits (108), Expect = 1e-04
Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)
Query: 920 LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 956
L +FL L++ +L L + L++F+ + L L L
Sbjct: 702 LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761
Query: 957 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 1009
L +L + + + + + F + L L + +L+ F
Sbjct: 762 LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821
Query: 1010 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1061
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 822 IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 45.4 bits (108), Expect = 1e-04
Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)
Query: 1048 LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 1084
L +FL L++ +L L + L++F+ + L L L
Sbjct: 702 LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761
Query: 1085 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 1137
L +L + + + + + F + L L + +L+ F
Sbjct: 762 LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821
Query: 1138 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1189
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 822 IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 45.4 bits (108), Expect = 1e-04
Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)
Query: 1176 LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 1212
L +FL L++ +L L + L++F+ + L L L
Sbjct: 702 LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761
Query: 1213 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 1265
L +L + + + + + F + L L + +L+ F
Sbjct: 762 LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821
Query: 1266 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1317
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 822 IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 42.3 bits (100), Expect = 0.001
Identities = 22/178 (12%), Positives = 61/178 (34%), Gaps = 35/178 (19%)
Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFLL--------------------------LFLFL 1233
L +FL L++ +L L + L++ + + L+
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 1234 LLLFLLLFLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLL----LLF 1284
+LL ++L + + + ++ + +L L + L L+F+ +
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1285 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLL 1342
+P + L L+ L + + + + +++F +F + ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYI 877
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 35/172 (20%)
Query: 816 FLLLLFLLLFLFLLLFLLLLFLILPLFLL--------------------------LFLFL 849
L +FL L++ +L L + L++ + + L+
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 850 LLLFLLLFLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLL----LLF 900
+LL ++L + + + ++ + +L L + L L+F+ +
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 901 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 952
+P + L L+ L + + + + +++F +F ++
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIM 871
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 35/172 (20%)
Query: 944 FLLLLFLLLFLFLLLFLLLLFLILPLFLL--------------------------LFLFL 977
L +FL L++ +L L + L++ + + L+
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 978 LLLFLLLFLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLL----LLF 1028
+LL ++L + + + ++ + +L L + L L+F+ +
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1029 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1080
+P + L L+ L + + + + +++F +F ++
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIM 871
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 35/172 (20%)
Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLL--------------------------LFLFL 1105
L +FL L++ +L L + L++ + + L+
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 1106 LLLFLLLFLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLL----LLF 1156
+LL ++L + + + ++ + +L L + L L+F+ +
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1157 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1208
+P + L L+ L + + + + +++F +F ++
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIM 871
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 853 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 890
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 891 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 943
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 944 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 997
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 885 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 922
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 923 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 975
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 976 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1029
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 949 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 986
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 987 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 1039
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1040 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1093
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 981 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 1018
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 1019 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 1071
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1072 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1125
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 1050
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 1051 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 1103
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1104 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1157
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 1114
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 1115 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 1167
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1168 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1221
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 1146
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 1147 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 1199
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1200 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1253
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
Score = 38.5 bits (90), Expect = 0.020
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 30/175 (17%)
Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLL----------------------LLFLLLFL 1178
L L +L + ++ L L
Sbjct: 700 IHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMS 759
Query: 1179 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FL 1231
LL +L + + + + + F + L L + +L+ F
Sbjct: 760 VLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW 819
Query: 1232 FLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1285
+ + L L+ +L F I F ++ + + +F ++ +
Sbjct: 820 SSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 1e-04
Identities = 97/679 (14%), Positives = 198/679 (29%), Gaps = 178/679 (26%)
Query: 31 EYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYI 90
E E +Y K I F F + V + ++L + E I +I
Sbjct: 10 ETGEHQYQY-KDILSVFEDAFVDN-FDCKDVQDMPK----SILSKE-E--------IDHI 54
Query: 91 HEKFGPNFEYDQLLFSYVSPKDRVIYY----NVLKTKYEKCPDFWPY----PRLEKERYN 142
LF + K + VL+ Y+ P + Y
Sbjct: 55 IMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 143 IYRSVIY--PPDMTPY-VKSGDCFD--------------IIIVGASAAGC---VLAN--- 179
R +Y Y V + ++I G G +A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVC 171
Query: 180 ---RLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR 236
++ K+ + + + + + L + D + + + N +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSS-----NIK 224
Query: 237 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY----NGWGYDETLKYF-------V 285
++I + + + ++ +L + YEN N + F +
Sbjct: 225 LRIHSIQ-----AELRRLLKSK----PYEN----CLLVLLNVQ-NAKAWNAFNLSCKILL 270
Query: 286 KSEDYRSVI--YNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDR 343
+ + V + + H + + + L ++ +++ + + Q+L P+++
Sbjct: 271 TTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVLTT 325
Query: 344 YVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEY 403
P R S + N + K+T +I + NV EY
Sbjct: 326 --------NP------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 404 VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVK------QDLRVG 457
R ++ + P IP D+
Sbjct: 372 --------R-----------------KMFDRLSVFP----PSAHIPTILLSLIWFDVIKS 402
Query: 458 ENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMH-----SY----CYCL 508
+ + + + + P + T+ + + V +H Y +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDS 461
Query: 509 AHLDEVKIPVKQD----LRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIG 564
L IP D +G +LK N + + F R V+ + F++L +I
Sbjct: 462 DDL----IPPYLDQYFYSHIGHHLK-NIEHPERMTLF-----RMVF---LDFRFLEQKIR 508
Query: 565 PLSNAGLWSFTGYI-DTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVN 623
S A W+ +G I +TLQ L+ + Y ND + + DF + N
Sbjct: 509 HDSTA--WNASGSILNTLQ-----QLKFYKPYICDNDPKYERLVNAILDF---LPKIEEN 558
Query: 624 LNKRTDMGVISMSLVNPKS 642
L ++ ++L+
Sbjct: 559 LICSKYTDLLRIALMAEDE 577
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 45.4 bits (107), Expect = 1e-04
Identities = 58/439 (13%), Positives = 144/439 (32%), Gaps = 39/439 (8%)
Query: 974 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF---------LLLFLFLLLFL 1024
F+ + LF + +F L F + +++ +L F L +F +L
Sbjct: 309 FVVVSALFFVQTMFGALLAHYYTEPDSFFGINWIYDILPFNIAKGYHLQLAIFWIATAWL 368
Query: 1025 LLLFLILPL----------FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL----- 1069
+ I PL L+ LF L+ L+ + +L + + + LL
Sbjct: 369 GMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLGNEWFLLGHQGW 428
Query: 1070 ------FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1123
++ ++L + + L+L + + L + LLF ++
Sbjct: 429 EYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSAIAVPFFYIFAF 488
Query: 1124 FLILPLFLLL---FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1180
F+ + + + ++ + +F + ++++ +L L+ + L +
Sbjct: 489 FIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLVTKKSTVRALYFQFTI 548
Query: 1181 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1240
LL ++ + + + + +F L + L L ++ ++
Sbjct: 549 LLGSGVIGIGHHYYYNGSPEVWIALGAVFSALEVIPLTLLIL---EAYEQYKMMRDGGAN 605
Query: 1241 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1300
F + F L+ + + +F L+ L + L ++ + +
Sbjct: 606 FPYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMMGVYGMFAI 665
Query: 1301 FLLLFLFLLLFLLLLF---LILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSS 1357
+LL+ + + + +L + L + + LL + + + S
Sbjct: 666 AVLLYSLRNIVKPEAWNDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAFIHGYWASR 725
Query: 1358 SSSSSSFSPLSPLFDFRTI 1376
S S + L R +
Sbjct: 726 SPSFLQQDVVQNLLLVRAV 744
Score = 44.3 bits (104), Expect = 3e-04
Identities = 47/408 (11%), Positives = 130/408 (31%), Gaps = 31/408 (7%)
Query: 780 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 839
L ++ +L + +F+ + L+ LF L+ L+ + +L + +
Sbjct: 358 LAIFWIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLG 417
Query: 840 PLFLLL-----------FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 888
+ LL ++ ++L + + L+L + + L + LLF
Sbjct: 418 NEWFLLGHQGWEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSA 477
Query: 889 FLFLLLFLLLLFLILPLFLLL---FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 945
++ F+ + + + ++ + +F + ++++ +L L+
Sbjct: 478 IAVPFFYIFAFFIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLVTKKS 537
Query: 946 LLLFLLLFLFLLLFLLLLFL------------ILPLFLLLFLFLLLLFLLLFLFLLLFLL 993
+ L +LL ++ + + L + ++ LL L
Sbjct: 538 TVRALYFQFTILLGSGVIGIGHHYYYNGSPEVWIALGAVFSALEVIPLTLLILEAYEQYK 597
Query: 994 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL-----FLLL 1048
++ F F L+ ++ + + + LP L ++
Sbjct: 598 MMRDGGANFPYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMM 657
Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
++ + + +L L + + L + L + +I L + +
Sbjct: 658 GVYGMFAIAVLLYSLRNIVKPEAWNDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAF 717
Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1156
+ L ++ L L+ + + + + L+ + LF
Sbjct: 718 IHGYWASRSPSFLQQDVVQNLLLVRAVPDTIFLIGVVALLVFAIKALF 765
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 43.5 bits (103), Expect = 4e-04
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 381 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 432
+V ++ +D G+ G+ V V A + V+L G+ N +++
Sbjct: 219 AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKMI 270
Score = 33.5 bits (77), Expect = 0.51
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE----AGGDT 198
D+++ G AG + + + VL++E GG T
Sbjct: 42 ADVVVAGYGIAGVAASIEAAR-AGADVLVLERTSGWGGAT 80
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 42.8 bits (100), Expect = 6e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 193
FD+ +VG+ G +A R++ +VL++E
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 41.7 bits (97), Expect = 0.001
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 149 YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 195
Y D+ + D+IIVGA ++G A +++ LKV +IE+
Sbjct: 56 YFKDLDKFAV----SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 99
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 41.8 bits (97), Expect = 0.001
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 153 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
MT S D++++GA G A RL+++ +++++ GG
Sbjct: 4 MTHPDIS---VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 41.2 bits (97), Expect = 0.002
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP 199
+ +D+++VG G A ++ LK L+IE +
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEIG 40
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 40.8 bits (94), Expect = 0.002
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 150 PPDMTPYVKSGDC------------FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG 196
PPD TP ++G FDI+++GA G A L +++ +LL+E GG
Sbjct: 12 PPDPTPPRRAGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71
Query: 197 DTPIHSRIPGMSSVLSLSEFDHAYLAEPSQ 226
V + + A+
Sbjct: 72 LPNEEGATILAPGVWTAQDIPAGQEAQAEW 101
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 40.5 bits (94), Expect = 0.003
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 129 DFWPYPRLEKERYNIYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVS- 185
F P E + R++ Y D+ + + DI+IVGA + G A LS +
Sbjct: 51 AFTFSPIREST---VSRAMTRRYFADLDAHAE----TDIVIVGAGSCGLSAAYVLSTLRP 103
Query: 186 SLKVLLIEAG 195
L++ ++EAG
Sbjct: 104 DLRITIVEAG 113
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 40.2 bits (94), Expect = 0.004
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197
+D++I+G AG A +LS LK+LL+++
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPW 40
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 39.7 bits (92), Expect = 0.006
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194
FD +IVGA AG VLA RL+ S +VL+++
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 39.6 bits (91), Expect = 0.006
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 19/70 (27%)
Query: 153 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG--MSS- 209
MT I I+G AG A L+ + +V L + SR G MSS
Sbjct: 1 MTV--------PIAIIGTGIAGLSAAQALTA-AGHQVHLFDK-------SRGSGGRMSSK 44
Query: 210 VLSLSEFDHA 219
D
Sbjct: 45 RSDAGALDMG 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.008
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 451 KQDLRVGEN-LKLNAQFTGPVMAFSAPLK 478
KQ L+ + LKL A + P +A A ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 37.6 bits (86), Expect = 0.008
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 519 KQDLRVGEN-LKLNAQFTGPVMAFSAPLK 546
KQ L+ + LKL A + P +A A ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 39.0 bits (91), Expect = 0.011
Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 3/130 (2%)
Query: 777 SFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLL 833
+ + L+ L + L+ +L + + LF+ + +
Sbjct: 205 AIVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRM 264
Query: 834 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 893
+ + L+ + L L + F L L I LF + L+ F L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILM 324
Query: 894 LFLLLLFLIL 903
+ + + L
Sbjct: 325 PIIKFILVAL 334
Score = 37.0 bits (86), Expect = 0.053
Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 10/153 (6%)
Query: 1215 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1274
+ L PL + LL+ +L L+ + LF+ + L +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMG-VLGALFIRCVRSIYELRM 264
Query: 1275 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1334
FL+ + L L L + F + L+ +
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILM 324
Query: 1335 FLLLLFLLSSFSSSSSSSFSYSSSSSSSSFSPL 1367
++ L + S + F P
Sbjct: 325 PIIKFIL---------VALSIGLPLPAGVFVPS 348
Score = 36.7 bits (85), Expect = 0.070
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 14/146 (9%)
Query: 1205 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1264
+ L+ + + LL+ +L + +L LF
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMG-------------VLGALF 252
Query: 1265 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL-LLFLILPLFL 1323
+ + + L + + L + LF L LF + LF +PL+
Sbjct: 253 IRCVRSIYELRMRHYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQ 312
Query: 1324 LLFLFLLLLFLFLLLLFLLSSFSSSS 1349
L L ++ F+L + S
Sbjct: 313 TDHFGWTELILMPIIKFILVALSIGL 338
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 810 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 866
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 867 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 923
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 924 LLLFLLLLF 932
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 842 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 898
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 899 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 955
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 956 LLLFLLLLF 964
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 874 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 930
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 931 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 987
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 988 LLLFLLLLF 996
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 906 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 962
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 963 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1019
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1020 LLLFLLLLF 1028
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 938 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 994
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 995 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1051
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1052 LLLFLLLLF 1060
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 970 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1026
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1083
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1084 LLLFLLLLF 1092
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 1002 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1058
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1115
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1116 LLLFLLLLF 1124
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 1034 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1090
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1091 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1147
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1148 LLLFLLLLF 1156
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 1066 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1122
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1123 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1179
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1180 LLLFLLLLF 1188
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 1098 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1154
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1155 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1211
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1212 LLLFLLLLF 1220
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 1130 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1186
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1187 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1243
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1244 LLLFLLLLF 1252
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 1162 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1218
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1219 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1275
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1276 LLLFLLLLF 1284
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 36.3 bits (84), Expect = 0.073
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 1194 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL---LFLLLFLFLLLFLLL 1250
+ L+ L + L+ +L + + LF+ + +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMR 265
Query: 1251 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLF 1307
+ + L+ + L L + F L L I LF + L+ L+ +
Sbjct: 266 HYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP 325
Query: 1308 LLLFLLLLF 1316
++ F+L+
Sbjct: 326 IIKFILVAL 334
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 817 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 874
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 875 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 934
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 849 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 906
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 907 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 966
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 881 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 938
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 939 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 998
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 913 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 970
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 971 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1030
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 945 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1002
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1003 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1062
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 977 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1034
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1035 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1094
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1066
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1067 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 1041 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1098
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1099 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1158
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1130
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1131 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1190
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1162
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1194
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1195 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1254
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 35.5 bits (82), Expect = 0.14
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF--LFLLLFLLLLFLILPLF 1226
LL+ + + L +L + + LF+ + L + +
Sbjct: 208 YELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHY 267
Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1286
+ L+ + LF L + LF + P + LF + F L+L+ +I
Sbjct: 268 PGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPII 327
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 789 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 848
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 849 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 908
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 909 LFLFLLLLFLLL 920
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 821 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 880
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 881 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 940
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 941 LFLFLLLLFLLL 952
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 853 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 912
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 913 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 972
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 973 LFLFLLLLFLLL 984
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 885 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 944
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 945 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1004
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1005 LFLFLLLLFLLL 1016
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 917 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 976
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 977 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1036
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1037 LFLFLLLLFLLL 1048
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 949 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1008
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1068
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1069 LFLFLLLLFLLL 1080
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 981 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1040
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1041 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1100
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1101 LFLFLLLLFLLL 1112
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1133 LFLFLLLLFLLL 1144
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1165 LFLFLLLLFLLL 1176
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1136
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1196
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1197 LFLFLLLLFLLL 1208
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1168
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1229 LFLFLLLLFLLL 1240
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1200
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1201 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1260
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1261 LFLFLLLLFLLL 1272
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 3/132 (2%)
Query: 1173 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1232
+ L+ + + LL+ +L + + L LF+ +
Sbjct: 206 IVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGV-LGALFIRCVRSIYELRM 264
Query: 1233 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1292
+ + + L + + L + LF + L L+
Sbjct: 265 RHYPGTNRYFLVGVVALFASALQ--YPFRLFALDPRATINDLFKAVPLYQTDHFGWTELI 322
Query: 1293 LFLFLLLLFLLL 1304
L + + + L
Sbjct: 323 LMPIIKFILVAL 334
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 38.7 bits (91), Expect = 0.014
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197
D +++GA G ++L L + +
Sbjct: 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 38.1 bits (88), Expect = 0.015
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194
+D IIVG+ G V AN L + + KVL+IE
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 38.1 bits (88), Expect = 0.016
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194
I+IVGA +G V+ +L+E +V +I+
Sbjct: 4 KKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQ 34
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 37.4 bits (85), Expect = 0.025
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDT--PIHSRIPGMSSVLSLSEFDHA 219
++IVGA G + A L L + + + D+ + + + + D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCT---ADLG 59
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 37.2 bits (87), Expect = 0.041
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197
+D+++VGA AG +R L V EA
Sbjct: 22 YDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG 55
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 36.8 bits (86), Expect = 0.047
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 153 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197
M+ KS D +++GA G A +++ + +KVL IEAG D
Sbjct: 1 MSNRAKSPA-LDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 36.8 bits (86), Expect = 0.050
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197
D+++VGA +G RL E V +IE GD
Sbjct: 17 VDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 36.8 bits (85), Expect = 0.055
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
+ FD+I++G G LA+ ++ +VLL+E
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLERE 39
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 36.5 bits (84), Expect = 0.063
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 150 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
+ P + I+G AG V L + V + E
Sbjct: 11 SSGLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERS 55
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 35.6 bits (81), Expect = 0.12
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
I+I+GA G A RL+E+ L E GG
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 35.5 bits (82), Expect = 0.13
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
D++++GA AG V A+ +++ S KV ++E
Sbjct: 6 VDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQ 37
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 35.2 bits (81), Expect = 0.14
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
FD ++VGA G A L S VL+++AG
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 35.3 bits (82), Expect = 0.14
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 203
D++I G G +LA L +V+++E +
Sbjct: 7 IDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRERAING 46
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 35.3 bits (81), Expect = 0.16
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 133 YPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLI 192
++ ER Y P ++ D+ I+G AG + L L V LI
Sbjct: 80 KDGMKIERQGYYDFHEEPVVEPGEIERVVV-DVAIIGGGPAG--IGAALELQQYLTVALI 136
Query: 193 E----AGGDT 198
E GGD
Sbjct: 137 EERGWLGGDM 146
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 35.4 bits (81), Expect = 0.16
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 153 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGGDTPIHSRIPGMS 208
MT Y S D++IVGA AG + A LSE LKV +I+ + + G+
Sbjct: 1 MTKY--SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ 58
Query: 209 S 209
Sbjct: 59 C 59
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.9 bits (81), Expect = 0.18
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLI 192
D++I+G+ AAG LA RL++ +V+++
Sbjct: 9 CDVLIIGSGAAGLSLALRLAD--QHQVIVL 36
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 34.9 bits (79), Expect = 0.18
Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 8/131 (6%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
+D+II+G C+L+ LS K+L+++ + G ++ L+L+ + +
Sbjct: 21 YDVIILGTGLKECILSGLLS-HYGKKILVLDR------NPYYGGETASLNLTNLYNTFKP 73
Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
+ + + G K + + IL + +Y + + + +
Sbjct: 74 KENIPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRV-TNYLEWLVVEGSYVYQHQKKG 132
Query: 283 YFVKSEDYRSV 293
+ + V
Sbjct: 133 FLTSEKFIHKV 143
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 34.9 bits (80), Expect = 0.19
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 146 SVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
VI PP +D+I++G G L+ + K LL+EA GG
Sbjct: 23 GVISPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRIGG 76
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 35.2 bits (81), Expect = 0.20
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 163 FDIIIVGASAAGC---VLANRLSEVSSLKVLLIE 193
DI+I+G +GC A +++ LKV L+E
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 34.6 bits (79), Expect = 0.27
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 163 FDIIIVGASAAGCVLANRLSEVS-----SLKVLLIE 193
D+++VG C A + K+LL++
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 34.0 bits (78), Expect = 0.32
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
+D I+VG +G A L+ + KVLL+E GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGERLGG 38
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 34.0 bits (78), Expect = 0.35
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 165 IIIVGASAAGCVLANRLSE-VSSLKVLLIEA 194
+++VG G A + S++V LIE
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 34.1 bits (78), Expect = 0.35
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 128 PDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSL 187
P P L + V D++IVG AG LA +L+ +
Sbjct: 13 PLIAPASPLAPAH---------TEAVPSQV------DVLIVGCGPAGLTLAAQLAAFPDI 57
Query: 188 KVLLIEAGGDTPIHSRIPGMSS 209
+ ++E + G++
Sbjct: 58 RTCIVEQKEGPMELGQADGIAC 79
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr
B556(FDN) subunit; oxidoreductase, selenium,
selenocysteine, seCys, molybdenum; HET: MGD HEM CDL;
1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Length = 217
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 790 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 849
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 850 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 906
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 907 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 942
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 822 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 881
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 882 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 938
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 939 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 974
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 854 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 913
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 914 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 970
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 971 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 886 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 945
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 946 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1002
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1003 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1038
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 918 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 977
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 978 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1034
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1035 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1070
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 950 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1009
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1010 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1066
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1067 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1102
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 982 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1041
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1042 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1098
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1099 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1134
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 1014 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1073
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1074 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1130
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1131 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1166
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 1046 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1105
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1106 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1162
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 1078 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1137
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1138 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1194
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1195 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 1110 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1169
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1170 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1226
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1262
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 1142 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1201
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1202 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1258
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1259 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1294
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 33.2 bits (75), Expect = 0.37
Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)
Query: 1174 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1233
++ F L+ L + P L + L + + ++ +F+
Sbjct: 20 TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 79
Query: 1234 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1290
+ + L + +L + + + + ++F+LL + + P F
Sbjct: 80 IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 139
Query: 1291 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1326
F ++ + LL +L+ +++ +++ +
Sbjct: 140 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
Score = 29.4 bits (65), Expect = 6.9
Identities = 18/154 (11%), Positives = 53/154 (34%), Gaps = 18/154 (11%)
Query: 775 AISFLLLFLFLLLLFLLLFLFLLLFL---LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 831
I F L+ L + F +L + ++ P F + L+ + F+ +
Sbjct: 22 VICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIP 81
Query: 832 LLLLFLILPLFLLLFLFL---------------LLLFLLLFLFLLLFLLLLFLILPLFLL 876
L + + ++ + ++ + +L + + + P F
Sbjct: 82 DKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQ 141
Query: 877 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 910
F ++ + LL +L+ +++ +++ +
Sbjct: 142 YFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 175
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 33.7 bits (77), Expect = 0.52
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 206
D+++VG +G A L + S L V+++EA R+ G
Sbjct: 6 DVVVVGGGISGMAAAKLLHD-SGLNVVVLEA------RDRVGG 41
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 33.5 bits (77), Expect = 0.58
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 150 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSR 203
M ++ D++I+G G LA L+ V L++E T H R
Sbjct: 18 GSHMNAPIE----TDVLILGGGPVGMALALDLAHRQVG---HLVVEQTDGTITHPR 66
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 33.2 bits (75), Expect = 0.63
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
+II+GA AG A+ L + L++EA GG
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 33.2 bits (76), Expect = 0.72
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGDTPIHS 202
D++IVGA AG A RL ++++ L+V L+E H+
Sbjct: 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT 80
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 32.5 bits (75), Expect = 0.76
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 163 FDIIIVGASAAG----CVLANRLSEVSSLKVLLIEAGG 196
FD+II+G S AG L R + +LL++AG
Sbjct: 3 FDVIIIGGSYAGLSAALQLG-R----ARKNILLVDAGE 35
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 32.5 bits (73), Expect = 0.93
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE----FDH 218
+D+I++G C+L+ LS V KVL I+ G ++ ++LS+ F
Sbjct: 12 YDVIVLGTGITECILSGLLS-VDGKKVLHIDK------QDHYGGEAASVTLSQLYEKFKQ 64
Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD 278
+++ + + G K L + + NIL + Y +F ++ +
Sbjct: 65 NPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVT-RYVDFKQVSGS----- 118
Query: 279 ETLKYFVKSEDYRSVIYNESKAVH 302
Y K V NE +A+
Sbjct: 119 ----YVFKQGKIYKVPANEIEAIS 138
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport,
sugar transport, transmembrane, formylation; 2.95A
{Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A
2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 32.6 bits (74), Expect = 0.95
Identities = 33/251 (13%), Positives = 70/251 (27%), Gaps = 7/251 (2%)
Query: 793 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 852
L+++ +L++F +F+ L + + + + P +
Sbjct: 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 853 FLLLFLFLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 910
F +F + + + ++ + +F L L+ +LLF
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
Query: 911 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 970
+ F L L LF FL L + + +F F
Sbjct: 196 TVANAVGANHSAFSLKLALELFRQPK-----LWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 971 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1030
+F + L + PL + L L + + + F
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 1031 LPLFLLLFLFL 1041
L +++ L
Sbjct: 311 SALEVVILKTL 321
Score = 32.6 bits (74), Expect = 0.95
Identities = 33/251 (13%), Positives = 70/251 (27%), Gaps = 7/251 (2%)
Query: 889 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 948
L+++ +L++F +F+ L + + + + P +
Sbjct: 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 949 FLLLFLFLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
F +F + + + ++ + +F L L+ +LLF
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
Query: 1007 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1066
+ F L L LF FL L + + +F F
Sbjct: 196 TVANAVGANHSAFSLKLALELFRQPK-----LWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 1067 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
+F + L + PL + L L + + + F
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 1127 LPLFLLLFLFL 1137
L +++ L
Sbjct: 311 SALEVVILKTL 321
Score = 32.6 bits (74), Expect = 0.95
Identities = 33/251 (13%), Positives = 70/251 (27%), Gaps = 7/251 (2%)
Query: 985 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1044
L+++ +L++F +F+ L + + + + P +
Sbjct: 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 1045 FLLLFLFLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1102
F +F + + + ++ + +F L L+ +LLF
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
Query: 1103 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1162
+ F L L LF FL L + + +F F
Sbjct: 196 TVANAVGANHSAFSLKLALELFRQPK-----LWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
+F + L + PL + L L + + + F
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 1223 LPLFLLLFLFL 1233
L +++ L
Sbjct: 311 SALEVVILKTL 321
Score = 32.6 bits (74), Expect = 0.95
Identities = 33/251 (13%), Positives = 70/251 (27%), Gaps = 7/251 (2%)
Query: 1081 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
L+++ +L++F +F+ L + + + + P +
Sbjct: 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 1141 FLLLFLFLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
F +F + + + ++ + +F L L+ +LLF
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
Query: 1199 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1258
+ F L L LF FL L + + +F F
Sbjct: 196 TVANAVGANHSAFSLKLALELFRQPK-----LWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 1259 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1318
+F + L + PL + L L + + + F
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 1319 LPLFLLLFLFL 1329
L +++ L
Sbjct: 311 SALEVVILKTL 321
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 32.5 bits (75), Expect = 0.97
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197
D I++GA G +A L+ +VL+ EA
Sbjct: 5 IDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 32.3 bits (74), Expect = 1.0
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 203
+D+II+G+ + G + + L VL+ +A P H
Sbjct: 3 YDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAH--MPPHQH 40
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 32.4 bits (72), Expect = 1.0
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 147 VIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIH--- 201
V M+ + I+IVG AG + A+ L + + + L++A +
Sbjct: 15 VPRGSHMSGKIDK-----ILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGE 69
Query: 202 SRIPGMSSVL 211
+ IP + +
Sbjct: 70 ATIPNLQTAF 79
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.8 bits (74), Expect = 1.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 1342 LSSFSSSSSSSFSYSSSSSSSSFSPLSP 1369
S F + + S SS FSP SP
Sbjct: 1520 TSPFGAYGEAPTSPGFGVSSPGFSPTSP 1547
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A
{Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*
Length = 290
Score = 31.8 bits (73), Expect = 1.3
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 373 AGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL 432
G + +Y + V I + +E T + V + + +
Sbjct: 188 KGWTSFIYTISGD----VYIGPDDAQQKIE----PHHTAVLGEGDSVQVENKDPKRSHFV 239
Query: 433 LLSG 436
L++G
Sbjct: 240 LIAG 243
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 31.7 bits (73), Expect = 1.5
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 9/37 (24%)
Query: 163 FDIIIVGASAAG----CVLANRLSEVSSLKVLLIEAG 195
D ++GA AG VL R + ++ L +
Sbjct: 7 IDCAVIGAGPAGLNASLVLG-R----ARKQIALFDNN 38
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 32.0 bits (73), Expect = 1.7
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSR 203
D+++VGA G A L+ V VL++E + R
Sbjct: 7 DVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPGLSPYPR 45
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 31.7 bits (72), Expect = 1.8
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 203
+D+++VG G A +++E +VL++E T +
Sbjct: 5 YDVVVVGGGPVGLATAWQVAE-RGHRVLVLERH--TFFNEN 42
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 32.0 bits (73), Expect = 1.8
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSRIPGMS 208
D+++VG G +LA L V L++E + H R +
Sbjct: 51 DVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALH 94
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 31.7 bits (73), Expect = 1.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGD 197
+ ++G+ A A + E +V LIE GG
Sbjct: 5 VQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERGTIGGT 41
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 31.4 bits (71), Expect = 2.2
Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 1/228 (0%)
Query: 1120 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1179
L + P ++ L ++ +++ +L + + F + L
Sbjct: 27 WFHLENLFPAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEVRAEYHSPVRFSFIALI 86
Query: 1180 LLLFLLLLFLILPLF-LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1238
+ +L+ ++ L+ + + + + LF L + L+ L
Sbjct: 87 PITTMLVGDILYRWNPLIAEVLIWIGTIGQLLFSTLRVSELWQGGVFEQKSTHPSFYLPA 146
Query: 1239 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1298
+ F L L L L F ++ +++ LL L + L + + L
Sbjct: 147 VAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHLRISSLEPQFRATMGIVLA 206
Query: 1299 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFS 1346
F+ + +L + + + + L L L + +
Sbjct: 207 PAFVCVSAYLSINHGEVDTLAKILWGYGFLQLFFLLRLFPWIVEKGLN 254
Score = 29.5 bits (66), Expect = 8.0
Identities = 30/281 (10%), Positives = 79/281 (28%), Gaps = 7/281 (2%)
Query: 1056 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1115
L + P ++ L ++ +++ +L + + F + L
Sbjct: 27 WFHLENLFPAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEVRAEYHSPVRFSFIALI 86
Query: 1116 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1175
+ +L+ ++ L+ L+ + + L + +F
Sbjct: 87 PITTMLVGDILYRWNPLIAEVLIWIGTIGQLLFSTLRVSELWQGGVFEQKSTHPSFYLPA 146
Query: 1176 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP-------LFLL 1228
+ L L LF ++ ++F +LL L + + P + L
Sbjct: 147 VAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHLRISSLEPQFRATMGIVLA 206
Query: 1229 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1288
+ +L + + L + L FL L +++ + +
Sbjct: 207 PAFVCVSAYLSINHGEVDTLAKILWGYGFLQLFFLLRLFPWIVEKGLNIGLWAFSAGLAS 266
Query: 1289 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1329
+ F L + + L + + ++
Sbjct: 267 MANSATAFYHGNVLQGVSIFAFVFSNVMIGLLVLMTIYKLT 307
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 31.4 bits (71), Expect = 2.3
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 151 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
D+ VK ++++G AG A L + + KV ++EA GG
Sbjct: 2 GDLIGKVKGS--HSVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRPGG 48
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.4 bits (71), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
+I+VGA +G A RLSE +L++EA GG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 31.2 bits (71), Expect = 2.5
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 165 IIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDTPIHSRIPG 206
++++G G A L + LK+ LI D P P
Sbjct: 5 VVVIGGGVGGIATAYNLRNLMPDLKITLIS---DRPYFGFTPA 44
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 31.1 bits (71), Expect = 2.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 164 DIIIVGASAAGCVLAN--RLSEVSSLKVLLIEAGGDTPIHSRIPGMS 208
+I+VGA AG +LA RL V V+++E SR G +
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFT 57
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 30.7 bits (70), Expect = 3.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 203
FD+I+VGA + G +L++ +K LL++A P H+
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD--PPHTN 41
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 31.0 bits (70), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
++IVGA AG A L+ + +V ++EA GG
Sbjct: 35 HVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERPGG 70
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 30.7 bits (70), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPIHSRIPGMS 208
+I+VGA AG +LA L V V+++E + SR G +
Sbjct: 13 AVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFT 56
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 30.6 bits (69), Expect = 3.8
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 8/145 (5%)
Query: 762 ISVLPNAIITQSDAISFLLLFLFLLLLFLL-LFLFLLLFLLLLFLILPLFLLLFLFLLLL 820
+SVLP I ++ +L LL + L + L L +L + +L L
Sbjct: 1 MSVLPFLRIY--APLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAA 58
Query: 821 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 880
LL ++ + + + +L L + L + L L +
Sbjct: 59 TLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVL 118
Query: 881 LLLLF-----LLLFLFLLLFLLLLF 900
+L L+ L +L
Sbjct: 119 GRVLANEARNLIGVTTLFGVVLFAV 143
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 30.5 bits (69), Expect = 4.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
D+ IVGA +G A L + + L V +IEA GG
Sbjct: 7 DVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRVGG 42
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 30.4 bits (68), Expect = 5.0
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 150 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGGDTPIHSRIP 205
MT + D+I VG + LA L E +L+VL ++ GD H
Sbjct: 18 GSHMTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH---G 74
Query: 206 GM 207
Sbjct: 75 NT 76
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 30.4 bits (68), Expect = 5.3
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 142 NIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH 201
++ ++ I++G G L++ +++E G + +
Sbjct: 87 HVRQTPDMEYKFVAKAPENLTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE--VR 143
Query: 202 SR 203
R
Sbjct: 144 ER 145
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 30.2 bits (67), Expect = 5.6
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196
+D+I++G C+L+ +S V+ KVL ++
Sbjct: 7 YDVIVLGTGLTECILSGIMS-VNGKKVLHMDRNP 39
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.5 bits (67), Expect = 5.9
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 165 IIIVGASAAGCVLANRLSEVSSLKVLLIE 193
+II+G LA + V++I
Sbjct: 3 VIIIGGETTAYYLARSMLS-RKYGVVIIN 30
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 29.8 bits (67), Expect = 6.4
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
I I+GA AG L + ++E GG
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 29.7 bits (65), Expect = 7.1
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 165 IIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDTPIH---SRIPGMSSVLSLSEFDHA 219
++IVG AG + A+ L + V L+E+G I + + D
Sbjct: 5 VVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDER 64
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 29.7 bits (67), Expect = 7.3
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 165 IIIVGASAAGCVLANRLSEV--SSLKVLLIE 193
++I+GA G A + E S +V LI
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.7 bits (68), Expect = 7.6
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 193
+ II+GA AAG A +L++ V + +
Sbjct: 5 SENIIIGAGAAGLFCAAQLAK-LGKSVTVFD 34
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.8 bits (68), Expect = 7.8
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
+D+I++G +G + A +E VLL++ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKG 58
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 29.3 bits (66), Expect = 9.2
Identities = 14/124 (11%), Positives = 39/124 (31%), Gaps = 15/124 (12%)
Query: 1241 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL----LLFLLLLFLILPLFLLLFLF 1296
++ + + + + L L L+L+L + +F + + L +
Sbjct: 227 IMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGG 286
Query: 1297 LLLLFLLLFLFLLLFLLLLFLILP-----------LFLLLFLFLLLLFLFLLLLFLLSSF 1345
+ ++L+ + LL + P + + +L + + +
Sbjct: 287 NITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLL 346
Query: 1346 SSSS 1349
SS
Sbjct: 347 CFSS 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.339 0.157 0.467
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,211,087
Number of extensions: 1215178
Number of successful extensions: 9160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7103
Number of HSP's successfully gapped: 665
Length of query: 1381
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1276
Effective length of database: 3,770,088
Effective search space: 4810632288
Effective search space used: 4810632288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 63 (27.9 bits)