Query psy11622
Match_columns 346
No_of_seqs 176 out of 436
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:23:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmw_A RNA (guanine-9-)-methyl 100.0 2.3E-69 8E-74 492.9 16.5 189 91-283 7-197 (197)
2 2qmm_A UPF0217 protein AF_1056 63.9 5.9 0.0002 35.7 4.0 82 171-265 106-193 (197)
3 3aia_A UPF0217 protein MJ1640; 60.2 4.4 0.00015 37.0 2.5 81 171-265 117-204 (211)
4 3tdg_A DSBG, putative uncharac 18.7 3.6 0.00012 38.9 -5.8 60 187-246 75-140 (273)
5 4dgf_A Sulfate transporter sul 18.5 3.5E+02 0.012 21.2 8.0 54 105-164 50-103 (135)
6 1lm7_A Subdomain of desmoplaki 17.5 40 0.0014 31.1 1.2 28 209-236 165-192 (248)
7 1dn1_A NSEC1, syntaxin binding 15.9 35 0.0012 35.1 0.3 44 206-260 538-582 (594)
8 1lm5_A Subdomain of desmoplaki 15.8 43 0.0015 30.1 0.9 48 211-258 50-106 (214)
9 2xhe_A UNC18; exocytosis, exoc 15.7 51 0.0018 34.0 1.5 77 206-313 569-645 (650)
10 3llo_A Prestin; STAS domain, c 15.2 4.2E+02 0.015 20.7 7.2 56 106-168 63-118 (143)
No 1
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-69 Score=492.92 Aligned_cols=189 Identities=49% Similarity=0.857 Sum_probs=171.7
Q ss_pred cchHHHHHHhhhcCCCCCeEEEEcCCCcccCHHHHhHHHHHHHHHHHHhhhcCCCCcEEEEcCChhHHHHHHHhc-CCCc
Q psy11622 91 PSRKALKLVKMETSPNKLRVCIDFSFDHLMTQKDICKCVKQFNWCYSLNRRAQHPLQFYVSSFKDKCKQEIARYN-GYEH 169 (346)
Q Consensus 91 ~~rk~~k~~~~~~~~~~~~IvIDcsFddlM~~KEi~SL~~QL~~~Ys~NRr~~~P~~L~lts~~g~l~~~l~k~~-g~~n 169 (346)
++||+.++ ...+++++|||||||+++|+++|+.||++||++|||+||++.+|++|+|||+++.+++.|.++. ||.+
T Consensus 7 ~~~k~~~~---~~~~~~~riviD~sf~~~M~~kE~~sl~~Ql~~~y~~nRr~~~p~~l~~t~~~~~~~~~~~~~~~~~~~ 83 (197)
T 4fmw_A 7 HDRKRVRR---DVVHSTLRLIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVN 83 (197)
T ss_dssp -------C---CCCCCSCEEEEECTTGGGSCHHHHHHHHHHHHHHHHHHHHCSSCCEEEEESCCHHHHHHHHHHCGGGGT
T ss_pred hhhhHHHH---hhCCCCCEEEEECCchHhcCHHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCChHHHHHHHHhhccCcc
Confidence 34554443 3458899999999999999999999999999999999999999999999999999999998865 8999
Q ss_pred c-ceEEecchhhhccCCCCeEEeCCCCccccccccCCceEEEEeEecCCCChhhhHHHHHHcCCcccccccccccccCCC
Q psy11622 170 W-DVHIHEQAYLDLFKKEDLVYLTSDSDNIIEELDQSKVYIIGGLVDHNQHKLLTLNKAREENIAHGKLPIDTYLNMKTR 248 (346)
Q Consensus 170 W-~v~~~~~~~~elf~k~~iVYLSpDS~~~L~eld~~kvYIIGGIVDrnr~Kglt~~kA~e~GI~taRLPI~eyi~l~~r 248 (346)
| .+++++++|+++|++++||||||||+++|+++++++|||||||||||++||+|+++|+++||+||||||++||+|.++
T Consensus 84 ~~~~~~~~~~~~~~f~~~~iVYLtpDs~~~L~~~~~~~vYIIGGiVD~n~~K~lt~~~A~~~gi~taRLPi~~~i~~~~~ 163 (197)
T 4fmw_A 84 WKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMNSR 163 (197)
T ss_dssp CSSCEECSSCHHHHSCGGGEEEECTTCSCBCCSCCTTSEEEEECCCCTTSSTTHHHHHHHHHTCEEEBCCCTTTC----C
T ss_pred ccceeecCccHHHhCCcccEEEECCCchhhhhccCCCCEEEEEEEEeCCCCcchhHHHHHHcCCCEEeccccceeecCCC
Confidence 9 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhCCCCHHHHHHhhCCCCcc
Q psy11622 249 QVLAVNHVFQILLAISSDKKSWKDALLETLPERKN 283 (346)
Q Consensus 249 kVLtiN~V~EILl~~~e~~~DW~eA~~~vIP~RK~ 283 (346)
+|||||||||||++|++ ++||++||.++||+|||
T Consensus 164 kvLtiN~V~eILl~~~~-~~dW~~Al~~viP~RKg 197 (197)
T 4fmw_A 164 KVLAVNHVFEIILEYLE-TRDWQEAFFTILPQRKG 197 (197)
T ss_dssp CCCCHHHHHHHHHHHHH-HCCHHHHHHHHSCCCC-
T ss_pred ccccHHHHHHHHHHHHh-CCCHHHHHHHhCCCCCC
Confidence 99999999999999999 99999999999999997
No 2
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=63.94 E-value=5.9 Score=35.71 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=51.8
Q ss_pred ceEEecchhhhccCC----CCeEEeCCCCccccc-cccCCceEEEEeEecCCCChhhhHHHH-HHcCCcccccccccccc
Q psy11622 171 DVHIHEQAYLDLFKK----EDLVYLTSDSDNIIE-ELDQSKVYIIGGLVDHNQHKLLTLNKA-REENIAHGKLPIDTYLN 244 (346)
Q Consensus 171 ~v~~~~~~~~elf~k----~~iVYLSpDS~~~L~-eld~~kvYIIGGIVDrnr~Kglt~~kA-~e~GI~taRLPI~eyi~ 244 (346)
.+.+...++.++... ..++||+.+++.+=. ++..+-+||||| |-+.+-+.. --.++...+ +.
T Consensus 106 gi~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~~~~~~~~fvlGd------H~~f~~e~~~~l~~~~~~~------iS 173 (197)
T 2qmm_A 106 GVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNAQLPPNPLFVIGD------HEGLTEEQEKVVERYAALK------LS 173 (197)
T ss_dssp TEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGSCCCSSEEEEEEC------TTCCCHHHHHHHHTTCSEE------EE
T ss_pred CEEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchhhcCCCCEEEEeC------CCCCCHHHHHHHHHhcCeE------EE
Confidence 456666666665442 469999999985533 444577999999 445554421 111222222 22
Q ss_pred cCCCcccchHHHHHHHHHhhh
Q psy11622 245 MKTRQVLAVNHVFQILLAISS 265 (346)
Q Consensus 245 l~~rkVLtiN~V~EILl~~~e 265 (346)
+ +...|...||+-++..++.
T Consensus 174 i-gp~~L~A~~vi~~vh~~ld 193 (197)
T 2qmm_A 174 L-SPLSLLAEQCVVIAHHHLD 193 (197)
T ss_dssp C-CSSCCCHHHHHHHHHHHHH
T ss_pred E-CCchhHHHHHHHHHHHHHh
Confidence 3 5688999999999988775
No 3
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=60.19 E-value=4.4 Score=36.97 Aligned_cols=81 Identities=17% Similarity=0.402 Sum_probs=51.4
Q ss_pred ceEEecchhhhccC----CC-CeEEeCCCCccccc-cccCCceEEEEeEecCCCChhhhHHHHHH-cCCccccccccccc
Q psy11622 171 DVHIHEQAYLDLFK----KE-DLVYLTSDSDNIIE-ELDQSKVYIIGGLVDHNQHKLLTLNKARE-ENIAHGKLPIDTYL 243 (346)
Q Consensus 171 ~v~~~~~~~~elf~----k~-~iVYLSpDS~~~L~-eld~~kvYIIGGIVDrnr~Kglt~~kA~e-~GI~taRLPI~eyi 243 (346)
.+.+...++.++.. .. .++||+.++..+=. ++ .+-+||+|+ |-+++-+...- .++...+ +
T Consensus 117 gi~v~~~sle~ll~e~~~~~~~v~~L~E~G~~i~~~~~-~~~~fvlGd------H~~f~~e~~~~L~~~~~~~------i 183 (211)
T 3aia_A 117 GIYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDI-ENPVFIIGD------HIGIGEEDERFLDEIKAKR------I 183 (211)
T ss_dssp TEEEECCCHHHHHHHHHHTTCEEEEEEEEEEEGGGCCC-CSEEEEEEC------SSCSCHHHHHHHHHTTCEE------E
T ss_pred CeEEEcCCHHHHHHHHhhcCCcEEEEcCCCCCCccccc-CCcEEEEEC------CCCCCHHHHHHHHhhCCeE------E
Confidence 45666666665543 23 59999999875533 34 678999999 44555542211 1222222 2
Q ss_pred ccCCCcccchHHHHHHHHHhhh
Q psy11622 244 NMKTRQVLAVNHVFQILLAISS 265 (346)
Q Consensus 244 ~l~~rkVLtiN~V~EILl~~~e 265 (346)
.+ +.+.|..+||+-++..++.
T Consensus 184 Si-gp~~L~A~hvi~~vh~~LD 204 (211)
T 3aia_A 184 SL-SPLELHANHCITIIHNVLD 204 (211)
T ss_dssp EC-CSSCCCHHHHHHHHHHHHH
T ss_pred EE-CCcchHHHHHHHHHHHHhc
Confidence 23 5688999999999988875
No 4
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=18.67 E-value=3.6 Score=38.87 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=42.3
Q ss_pred CeEEeCCCCccccc-----cccC-CceEEEEeEecCCCChhhhHHHHHHcCCcccccccccccccC
Q psy11622 187 DLVYLTSDSDNIIE-----ELDQ-SKVYIIGGLVDHNQHKLLTLNKAREENIAHGKLPIDTYLNMK 246 (346)
Q Consensus 187 ~iVYLSpDS~~~L~-----eld~-~kvYIIGGIVDrnr~Kglt~~kA~e~GI~taRLPI~eyi~l~ 246 (346)
-++|.|+|+...+. -+++ ++..++|-|+|-...+++|-.+-.++....+.||.+..|.+.
T Consensus 75 ~~ly~s~DGk~~I~~~~v~Y~~~~g~y~l~G~L~d~~~~~nlT~~~~~~l~~~~~~l~~~~~I~~~ 140 (273)
T 3tdg_A 75 IPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKLNAIFNEIPADYAIELP 140 (273)
T ss_dssp EEEEECTTSCCEEECCSCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTSEEEC
T ss_pred eeEEECCCCCeeeccCcEEEEcCCCCEEEEEeeeccccccChhHHHHHHHHHHHHhCCccccEEEc
Confidence 47999999987665 2333 345667899996555678766554443678899999988763
No 5
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=18.51 E-value=3.5e+02 Score=21.24 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCCCcccCHHHHhHHHHHHHHHHHHhhhcCCCCcEEEEcCChhHHHHHHHh
Q psy11622 105 PNKLRVCIDFSFDHLMTQKDICKCVKQFNWCYSLNRRAQHPLQFYVSSFKDKCKQEIARY 164 (346)
Q Consensus 105 ~~~~~IvIDcsFddlM~~KEi~SL~~QL~~~Ys~NRr~~~P~~L~lts~~g~l~~~l~k~ 164 (346)
+....|||||+--..|.---+..|..=+..+-. .-..|.|+++++.+.+.|...
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~------~g~~l~l~~~~~~v~~~l~~~ 103 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEK------RGTILLLSGVSDRLYGALNRF 103 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHH------HTCEEEEESCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHH------CCCEEEEEcCCHHHHHHHHHc
Confidence 445689999999999987766666544443333 346899999999988877653
No 6
>1lm7_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat, structural protein; 3.00A {Homo sapiens} SCOP: d.211.2.1
Probab=17.51 E-value=40 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=23.5
Q ss_pred EEEeEecCCCChhhhHHHHHHcCCcccc
Q psy11622 209 IIGGLVDHNQHKLLTLNKAREENIAHGK 236 (346)
Q Consensus 209 IIGGIVDrnr~Kglt~~kA~e~GI~taR 236 (346)
.-|||||......++++.|-+.|+=-..
T Consensus 165 ~tGGiidp~~g~rl~l~~A~~~Glid~~ 192 (248)
T 1lm7_A 165 ATGGIIDPKESHRLPVDIAYKRGYFNEE 192 (248)
T ss_dssp TTTSEECTTTCSEECHHHHHHTTSCCHH
T ss_pred ccCceecCCcCcccCHHHHHHcCCcCHH
Confidence 3499999988888999999999975544
No 7
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=15.85 E-value=35 Score=35.07 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=29.0
Q ss_pred ceEEEEeEecCCCChhhhHHHHHHcCCcccccc-cccccccCCCcccchHHHHHHH
Q psy11622 206 KVYIIGGLVDHNQHKLLTLNKAREENIAHGKLP-IDTYLNMKTRQVLAVNHVFQIL 260 (346)
Q Consensus 206 kvYIIGGIVDrnr~Kglt~~kA~e~GI~taRLP-I~eyi~l~~rkVLtiN~V~EIL 260 (346)
=||||||+ ||..|+..---.+.++ .+ |-+.|..|||-...++=|
T Consensus 538 ivFivGG~---------Ty~E~r~~~els~~~~~~~--VilG~t~il~p~~Fl~~l 582 (594)
T 1dn1_A 538 IIFILGGV---------SLNEMRCAYEVTQANGKWE--VLIGSTHILTPQKLLDTL 582 (594)
T ss_dssp EEEEETCE---------EHHHHHHHHHHHHHHSSCE--EEEEESSEECHHHHHHHH
T ss_pred EEEEeCCc---------cHHHHHHHHHHHhhcCCce--EEEeeCCcCCHHHHHHHH
Confidence 48999997 8888865322222233 22 446788899988877665
No 8
>1lm5_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat,, structural protein; 1.80A {Homo sapiens} SCOP: d.211.2.1
Probab=15.75 E-value=43 Score=30.13 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred EeEecCCCChhhhHHHHHHcCC---------cccccccccccccCCCcccchHHHHH
Q psy11622 211 GGLVDHNQHKLLTLNKAREENI---------AHGKLPIDTYLNMKTRQVLAVNHVFQ 258 (346)
Q Consensus 211 GGIVDrnr~Kglt~~kA~e~GI---------~taRLPI~eyi~l~~rkVLtiN~V~E 258 (346)
|||||-...+.++.+.|.+.|+ ..+..-...|..-.++..|++-+-++
T Consensus 50 ggiiDP~tg~~lsv~eA~~~GlId~~~~~~l~~a~~a~~g~~dp~t~~~lsv~eA~~ 106 (214)
T 1lm5_A 50 GGIIHPTTGQKLSLQDAVSQGVIDQDMATRLKPAQKAFIGFEGVKGKKKMSAAEAVK 106 (214)
T ss_dssp TSEECTTTCCEECHHHHHHTTSSCHHHHHHHHHHHHHHHCC-------CCCHHHHHH
T ss_pred CCCcCCCCCCcCCHHHHHHcCCCCHHHHHHHHHHHHHhCceecCCCCcccCHHHHHH
No 9
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=15.65 E-value=51 Score=33.98 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=29.2
Q ss_pred ceEEEEeEecCCCChhhhHHHHHHcCCcccccccccccccCCCcccchHHHHHHHHHhhhCCCCHHHHHHhhCCCCcccc
Q psy11622 206 KVYIIGGLVDHNQHKLLTLNKAREENIAHGKLPIDTYLNMKTRQVLAVNHVFQILLAISSDKKSWKDALLETLPERKNAA 285 (346)
Q Consensus 206 kvYIIGGIVDrnr~Kglt~~kA~e~GI~taRLPI~eyi~l~~rkVLtiN~V~EILl~~~e~~~DW~eA~~~vIP~RK~~~ 285 (346)
-||||||+ ||..+...-.-..+... -|-+.+..+++-+..++=|...-. | |....
T Consensus 569 iVF~iGGv---------TysEi~al~~ls~~~~~--~viigsT~Iln~~~fl~~l~~l~~-------------~-~~~~~ 623 (650)
T 2xhe_A 569 FVFINGTV---------SYNEIRCAYEVSQSSGY--EVYIGAHNIATPAEFVELVSLLDK-------------A-DQDVQ 623 (650)
T ss_dssp EEEEEEEE---------CHHHHHHHHHHHTTSSS--EEEEEEEEECCHHHHHHHHHTTTC--------------------
T ss_pred EEEEECCC---------CHHHHHHHHHHHhcCCC--EEEEeeCCcCCHHHHHHHHHHcCC-------------C-cccCC
Confidence 39999998 77766432211123222 244567889998887776643322 1 22222
Q ss_pred cccCCCCCcccCCcccceecccCccCCc
Q psy11622 286 AKNTGSEDAESCGEEEFEIKTGGEKSGN 313 (346)
Q Consensus 286 ~~~~~~~~~e~~~e~~~~i~~~~~~~~~ 313 (346)
+..+ +.++.++.|-||.-+.|-
T Consensus 624 ~~~~------~~~~~~~~~~~~~~~~~~ 645 (650)
T 2xhe_A 624 VLTQ------GQGDGGLVITTGSAQAGL 645 (650)
T ss_dssp ----------------------------
T ss_pred CCCc------cCCCCcEEEEeccccccc
Confidence 2222 367788899998877764
No 10
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=15.23 E-value=4.2e+02 Score=20.73 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCCcccCHHHHhHHHHHHHHHHHHhhhcCCCCcEEEEcCChhHHHHHHHhcCCC
Q psy11622 106 NKLRVCIDFSFDHLMTQKDICKCVKQFNWCYSLNRRAQHPLQFYVSSFKDKCKQEIARYNGYE 168 (346)
Q Consensus 106 ~~~~IvIDcsFddlM~~KEi~SL~~QL~~~Ys~NRr~~~P~~L~lts~~g~l~~~l~k~~g~~ 168 (346)
....|||||+--..|.---+..|..=+..+ ...-..|+|+++++...+.|... |+.
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~------~~~g~~l~l~~~~~~v~~~l~~~-gl~ 118 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEY------GDVGIYVYLAGCSAQVVNDLTSN-RFF 118 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHH------HTTTCEEEEESCCHHHHHHHHHT-TTT
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHH------HHCCCEEEEEeCCHHHHHHHHhC-CCe
Confidence 345799999999999877666665322222 23567899999999998888753 443
Done!