Query psy11622
Match_columns 346
No_of_seqs 176 out of 436
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 23:23:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v3ka1 c.116.1.6 (A:25-251) E 36.7 14 0.001 31.5 4.2 82 169-265 133-222 (227)
2 d1vc1a_ c.13.2.1 (A:) Anti-sig 31.8 66 0.0048 22.6 6.9 57 106-169 43-99 (110)
3 d1juva_ c.71.1.1 (A:) Dihydrof 29.1 22 0.0016 29.1 3.9 18 203-228 120-137 (193)
4 d2j0td1 b.40.3.1 (D:1-124) TIM 28.6 18 0.0013 27.5 3.0 26 192-217 63-92 (124)
5 d1lm5a_ d.211.2.1 (A:) Desmopl 28.1 13 0.00094 30.5 2.3 24 210-233 42-65 (196)
6 d1vdra_ c.71.1.1 (A:) Dihydrof 27.2 20 0.0014 28.3 3.2 13 201-213 90-102 (157)
7 d1th8b_ c.13.2.1 (B:) Anti-sig 27.1 36 0.0026 24.3 4.5 56 107-169 42-97 (115)
8 d1v58a2 d.17.3.1 (A:2-61) Thio 27.1 11 0.0008 26.2 1.3 13 188-200 39-51 (60)
9 d2qwva1 c.116.1.7 (A:5-205) Un 27.0 1.3E+02 0.0091 24.9 8.6 126 109-265 64-195 (201)
10 d1lm5a_ d.211.2.1 (A:) Desmopl 25.4 9.7 0.00071 31.3 0.9 26 210-235 118-143 (196)
11 d2dlqa4 g.37.1.1 (A:8-34) GLI- 24.4 6.9 0.0005 22.8 -0.2 11 330-340 1-11 (27)
No 1
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=36.66 E-value=14 Score=31.53 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=47.1
Q ss_pred ccceEEecchhhhccCC-CCeEEeCCCCccc-----cccccCCc--eEEEEeEecCCCChhhhHHHHHHcCCcccccccc
Q psy11622 169 HWDVHIHEQAYLDLFKK-EDLVYLTSDSDNI-----IEELDQSK--VYIIGGLVDHNQHKLLTLNKAREENIAHGKLPID 240 (346)
Q Consensus 169 nW~v~~~~~~~~elf~k-~~iVYLSpDS~~~-----L~eld~~k--vYIIGGIVDrnr~Kglt~~kA~e~GI~taRLPI~ 240 (346)
...+.+...+..+.++. ..+||||+.++.. ...+..+. ++||||.---.. .+.. .. ++
T Consensus 133 ~~Ll~vikn~Itd~lp~~~k~I~LS~~G~~~~~~~l~~~l~~~~~v~~viG~f~~GD~------------~~~~-~y-id 198 (227)
T d2v3ka1 133 EKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKD------------NFAD-EY-VD 198 (227)
T ss_dssp SEEEEEECSCGGGTSCSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSSCS------------CTTT-TT-CS
T ss_pred cceeeeeccccccccCCCCeEEEECCCCCccCHHHHHHHhccCCCEEEEEeeecCCCc------------cccc-cc-cc
Confidence 34566667777787764 5789999999743 22355555 889988721100 0000 00 22
Q ss_pred cccccCCCcccchHHHHHHHHHhhh
Q psy11622 241 TYLNMKTRQVLAVNHVFQILLAISS 265 (346)
Q Consensus 241 eyi~l~~rkVLtiN~V~EILl~~~e 265 (346)
+.+.+ |.-+|+.-.|+.=++.-+|
T Consensus 199 e~ISI-sdypLSa~~v~sri~~~~E 222 (227)
T d2v3ka1 199 EKVGL-SNYPLSASVACSKFCHGAE 222 (227)
T ss_dssp EEEBS-CSSCCCHHHHHHHHHHHHH
T ss_pred eEEEE-eCcchhHHHHHHHHHHHHH
Confidence 33333 5677887777666655444
No 2
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=31.76 E-value=66 Score=22.59 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCCcccCHHHHhHHHHHHHHHHHHhhhcCCCCcEEEEcCChhHHHHHHHhcCCCc
Q psy11622 106 NKLRVCIDFSFDHLMTQKDICKCVKQFNWCYSLNRRAQHPLQFYVSSFKDKCKQEIARYNGYEH 169 (346)
Q Consensus 106 ~~~~IvIDcsFddlM~~KEi~SL~~QL~~~Ys~NRr~~~P~~L~lts~~g~l~~~l~k~~g~~n 169 (346)
....|||||+--+.|.---+..|..-...+-. ...+++|+|+++.+++.|+. .|+..
T Consensus 43 ~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~------~~~~l~l~~~~~~v~~~l~~-~gl~~ 99 (110)
T d1vc1a_ 43 SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKI------NGKEFILSSLKESISRILKL-THLDK 99 (110)
T ss_dssp CCSEEEEEEEECCCBCHHHHHHHHHHHHHHHH------TTCEEEEESCCHHHHHHHHH-HTGGG
T ss_pred CCCEEEEEEECCCccCHHHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHH-cCCCc
Confidence 34579999999999987777666644433222 34579999999999987764 35543
No 3
>d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Bacteriophage T4 [TaxId: 10665]}
Probab=29.10 E-value=22 Score=29.08 Aligned_cols=18 Identities=44% Similarity=0.490 Sum_probs=13.0
Q ss_pred cCCceEEEEeEecCCCChhhhHHHHH
Q psy11622 203 DQSKVYIIGGLVDHNQHKLLTLNKAR 228 (346)
Q Consensus 203 d~~kvYIIGGIVDrnr~Kglt~~kA~ 228 (346)
..++||||||- --|+.|.
T Consensus 120 ~~~~i~VIGG~--------~IY~~~l 137 (193)
T d1juva_ 120 QNSKVSVIGGP--------ALLYAAL 137 (193)
T ss_dssp TTSCEEEEECH--------HHHHHHG
T ss_pred CCceEEEEeCH--------HHHHHHH
Confidence 45789999994 5666653
No 4
>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.60 E-value=18 Score=27.46 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=20.3
Q ss_pred CCCCcc----ccccccCCceEEEEeEecCC
Q psy11622 192 TSDSDN----IIEELDQSKVYIIGGLVDHN 217 (346)
Q Consensus 192 SpDS~~----~L~eld~~kvYIIGGIVDrn 217 (346)
||.++. .+..+.+++.|+|+|-++.+
T Consensus 63 tp~~~~~CG~~~~~l~~g~~YLI~G~~~~g 92 (124)
T d2j0td1 63 TPAMESVCGYFHRSHNRSEEFLIAGKLQDG 92 (124)
T ss_dssp EESCGGGTCCCCCCSCSSCEEEEEEEEETT
T ss_pred ecCccCccCccCcccCCCCeEEEEEEecCC
Confidence 565554 46789999999999998854
No 5
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.06 E-value=13 Score=30.51 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=19.0
Q ss_pred EEeEecCCCChhhhHHHHHHcCCc
Q psy11622 210 IGGLVDHNQHKLLTLNKAREENIA 233 (346)
Q Consensus 210 IGGIVDrnr~Kglt~~kA~e~GI~ 233 (346)
-|||||-..-.-+++..|.+.|+-
T Consensus 42 tg~iidp~tg~~~sl~eAi~~glI 65 (196)
T d1lm5a_ 42 TGGIIHPTTGQKLSLQDAVSQGVI 65 (196)
T ss_dssp TTSEECTTTCCEECHHHHHHTTSS
T ss_pred cCccccCCCCcEecHHHHHHCCCc
Confidence 478888877777888888888873
No 6
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]}
Probab=27.19 E-value=20 Score=28.26 Aligned_cols=13 Identities=46% Similarity=0.923 Sum_probs=10.3
Q ss_pred cccCCceEEEEeE
Q psy11622 201 ELDQSKVYIIGGL 213 (346)
Q Consensus 201 eld~~kvYIIGGI 213 (346)
..+..+||||||-
T Consensus 90 ~~~~~~i~IiGG~ 102 (157)
T d1vdra_ 90 SLDAETAYVIGGA 102 (157)
T ss_dssp HTTCSCEEEEECH
T ss_pred cCCCceEEEEech
Confidence 4566889999994
No 7
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.14 E-value=36 Score=24.33 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCcccCHHHHhHHHHHHHHHHHHhhhcCCCCcEEEEcCChhHHHHHHHhcCCCc
Q psy11622 107 KLRVCIDFSFDHLMTQKDICKCVKQFNWCYSLNRRAQHPLQFYVSSFKDKCKQEIARYNGYEH 169 (346)
Q Consensus 107 ~~~IvIDcsFddlM~~KEi~SL~~QL~~~Ys~NRr~~~P~~L~lts~~g~l~~~l~k~~g~~n 169 (346)
...|||||+--..|..--+..|..=...+ . .....|+|+|+++.+.+.|.. .|+.+
T Consensus 42 ~~~iilDls~v~~iDssg~~~L~~~~~~~-~-----~~g~~l~l~~~~~~v~~~l~~-~gl~~ 97 (115)
T d1th8b_ 42 IRHIVLNLGQLTFMDSSGLGVILGRYKQI-K-----NVGGQMVVCAVSPAVKRLFDM-SGLFK 97 (115)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHH-H-----HTTCCEEEESCCHHHHHHHHH-HTGGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH-H-----hCCCEEEEEECCHHHHHHHHH-cCCCc
Confidence 44699999999999877666665332222 1 236789999999999887765 35544
No 8
>d1v58a2 d.17.3.1 (A:2-61) Thiol:disulfide interchange protein DsbG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.06 E-value=11 Score=26.24 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=10.6
Q ss_pred eEEeCCCCccccc
Q psy11622 188 LVYLTSDSDNIIE 200 (346)
Q Consensus 188 iVYLSpDS~~~L~ 200 (346)
.+|||||+..+|.
T Consensus 39 alYlTpDGkh~i~ 51 (60)
T d1v58a2 39 TIYLTPDGKHAIS 51 (60)
T ss_dssp EEEECTTSSCEEE
T ss_pred EEEEcCCCCEEEE
Confidence 5999999987653
No 9
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=27.02 E-value=1.3e+02 Score=24.91 Aligned_cols=126 Identities=8% Similarity=0.129 Sum_probs=61.9
Q ss_pred eEEEEcCCCcccCHHHHhHHHHHHHHHHHHhhhcCCCCcEEEEcCChhHHHHHHHhcCCCccceEEecchhhhcc----C
Q psy11622 109 RVCIDFSFDHLMTQKDICKCVKQFNWCYSLNRRAQHPLQFYVSSFKDKCKQEIARYNGYEHWDVHIHEQAYLDLF----K 184 (346)
Q Consensus 109 ~IvIDcsFddlM~~KEi~SL~~QL~~~Ys~NRr~~~P~~L~lts~~g~l~~~l~k~~g~~nW~v~~~~~~~~elf----~ 184 (346)
+|.||=+--..+++.+-.|++.+|..+...--.......--++. +|.+...+|.++. .
T Consensus 64 ~I~f~g~~l~~l~p~dErs~a~~I~kaL~~~~~~~~~~~~e~~p------------------Gi~~~~~~~e~~l~e~~e 125 (201)
T d2qwva1 64 TITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQP------------------GLTVRTISFEALLGELAE 125 (201)
T ss_dssp EEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEET------------------TEEEECCCHHHHHHHHHT
T ss_pred EEEEecccccCCCchhHHHHHHHHHHHhhccCCCCCcceeEeCC------------------CEEEeCCCHHHHHHHHhc
Confidence 46666555555565455999999988764321110000000000 2333333333322 2
Q ss_pred CCCeEEeCCCCccccc-cccCCceEEEEeEecCCCChhhhHHHHHHcC-CcccccccccccccCCCcccchHHHHHHHHH
Q psy11622 185 KEDLVYLTSDSDNIIE-ELDQSKVYIIGGLVDHNQHKLLTLNKAREEN-IAHGKLPIDTYLNMKTRQVLAVNHVFQILLA 262 (346)
Q Consensus 185 k~~iVYLSpDS~~~L~-eld~~kvYIIGGIVDrnr~Kglt~~kA~e~G-I~taRLPI~eyi~l~~rkVLtiN~V~EILl~ 262 (346)
...++||.+|++..-+ ++.++-+||+| || .|+|.+.-.-+. +.+.| |.+ |.+.|=-+|++-|+..
T Consensus 126 ~~~~~~Lde~G~~i~~~~~~~~~~FILs---Dh---~~~~~~e~~~L~~~g~~~------iSL-Gp~~L~ashcI~ivH~ 192 (201)
T d2qwva1 126 HHSLYMMDKKGDSIRDIKIGPNPCFILT---DH---IPMPKKSGNSMKRLGVEK------ISL-GPKMLFASQCVTLIHN 192 (201)
T ss_dssp TSEEEEEEEEEEETTTSCCCSSEEEEEC---C-------------CTTTTTCEE------EEC-CSSCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCchhhccCCCCCEEEEe---CC---CCCCHHHHHHHHhcCCee------Eee-ccHHHHHhHHHHHHHH
Confidence 2469999999987654 44556699998 54 445554332211 11111 222 6778888999998887
Q ss_pred hhh
Q psy11622 263 ISS 265 (346)
Q Consensus 263 ~~e 265 (346)
++.
T Consensus 193 ~LD 195 (201)
T d2qwva1 193 EID 195 (201)
T ss_dssp HHH
T ss_pred Hhh
Confidence 765
No 10
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.35 E-value=9.7 Score=31.34 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=21.9
Q ss_pred EEeEecCCCChhhhHHHHHHcCCccc
Q psy11622 210 IGGLVDHNQHKLLTLNKAREENIAHG 235 (346)
Q Consensus 210 IGGIVDrnr~Kglt~~kA~e~GI~ta 235 (346)
-||+||....+.+++..|.+.|+=-.
T Consensus 118 tggivdp~tg~~l~l~eAi~~GLId~ 143 (196)
T d1lm5a_ 118 TGGLVDPEVHGRISTEEAIRKGFIDG 143 (196)
T ss_dssp TTSCBCGGGSCBCCHHHHHHTTSSCH
T ss_pred cCCeEeCCCCcEecHHHHHHCCCcCH
Confidence 48999988888899999999998433
No 11
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.40 E-value=6.9 Score=22.80 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=9.3
Q ss_pred ccchhhhhhhc
Q psy11622 330 VQDSTCEKKLL 340 (346)
Q Consensus 330 ~~~~~~~~~~~ 340 (346)
||++||.|+.|
T Consensus 1 vqcp~c~k~f~ 11 (27)
T d2dlqa4 1 VECPTCHKKFL 11 (27)
T ss_dssp CCCTTTCCCCS
T ss_pred CcCcchHHHHH
Confidence 78999998775
Done!