RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11622
(346 letters)
>gnl|CDD|216676 pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltransferase. This
is a family of tRNA (Guanine-1)-methyltransferases
EC:2.1.1.31. In E.coli K12 this enzyme catalyzes the
conversion of a guanosine residue to N1-methylguanine in
position 37, next to the anticodon, in tRNA.
Length = 185
Score = 125 bits (315), Expect = 1e-34
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Query: 117 DHLMTQKDICKCVKQFNWCYSLNRRAQHPLQFYVSSFKDKCKQE-----IARYNGYEHW- 170
D LM +K++ Q Y+ NRRA Y F K E + +G+E
Sbjct: 1 DDLMIEKELVSLELQILRDYTANRRATVDDHLYGGGFGMVLKPEPDLEALKSVSGWEVIL 60
Query: 171 ----DVHIHEQAYLDLFKKEDLVYLTSDSDNIIEELDQSK-VYIIGGLVDHNQHK----L 221
+ ++ +LFKKE LVYLT D + ++E LD K YIIGG+VD K L
Sbjct: 61 LTPTGIPFSQELASELFKKEHLVYLTGDYEGVLERLDDDKAEYIIGGIVDKGGEKGALTL 120
Query: 222 LTLNKAREENIA-HGKLPIDTYLNMKT--RQVLAVNHVFQILLAISSDK-KSWKDALLET 277
+ A + LP+D++L + L +N V +ILL+ + K ++W++ALL T
Sbjct: 121 IDAVVALLPGVLNTASLPLDSFLLGVPNYTRPLTLNQVPEILLSGNHAKIRNWEEALLRT 180
Query: 278 LPERK 282
+P+RK
Sbjct: 181 IPKRK 185
>gnl|CDD|216401 pfam01267, F-actin_cap_A, F-actin capping protein alpha subunit.
Length = 269
Score = 33.8 bits (78), Expect = 0.099
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 186 EDLVYLTSDSDNIIEELDQSKVYIIGGLVDHNQHKLLTLNKAREENI---AHGKLPIDTY 242
DL L D I + ++ L +N+ +L+ + E + + KL + Y
Sbjct: 23 ADLRALLGDDPLIKSTIAEA-------LEQYNEEQLVPVKLPGSEKVIISEYNKLGGNRY 75
Query: 243 LNMKTRQVLAVNHVFQILLAISSDKKS------WKDALLETL 278
+ +++ V+H+ Q + S + ++ +L + L
Sbjct: 76 FDPVSKKSFTVDHLKQKASDVESYELESEELELYRKSLDKAL 117
>gnl|CDD|215320 PLN02588, PLN02588, glycerol-3-phosphate acyltransferase.
Length = 525
Score = 32.6 bits (74), Expect = 0.31
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 208 YIIGGLVDHNQHKLLTLNKAREENIAHGKLPIDTYLNMKTRQVLAVNHVFQILLAISSDK 267
Y +G + D +H+L +EE + G+L T N + + L +I +SDK
Sbjct: 183 YYLGIMEDKKKHELAFDKVVQEERLNSGRLIGITSFNSPSHRSLFSQFCQEIYFVRNSDK 242
Query: 268 KSWKDALLETLPE 280
KSW+ TLP
Sbjct: 243 KSWQ-----TLPR 250
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 31.5 bits (72), Expect = 0.66
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 45 PLSKRAMKRKLKHEKWLKWKPIKRAKEREKLKQKKQYAREHNIPLGPSRKALKLVKMETS 104
PLSK A+K++LK K+A+E + K++ + A G SRK+
Sbjct: 7 PLSKNALKKRLKA---------KQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMD 57
Query: 105 PNKLR 109
P + R
Sbjct: 58 PTQYR 62
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.
Length = 874
Score = 30.5 bits (69), Expect = 1.4
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 7 LSNNLE-ANSIEAIQDDPEPKI-EKNVPENEPCDTNTAEPPLSKRAMKRKLKHEKWLKWK 64
++N LE A+ IE EP+I VP DT E ++ + + +L + + +
Sbjct: 267 IANTLEVADKIEPYNILGEPRIPNYPVPSGHTPDTYVEE--VAWQGLLERLNCKSRSEVE 324
Query: 65 PIKRAKEREKLKQKKQ---------------YAREHNIPLGPSR 93
P+ + + +LK +Q YAR++NIP+GP R
Sbjct: 325 PVYKERLEYELKMLQQMGFSTYFLVVWDYIKYARDNNIPVGPGR 368
>gnl|CDD|216090 pfam00733, Asn_synthase, Asparagine synthase. This family is
always found associated with pfam00310. Members of this
family catalyze the conversion of aspartate to
asparagine.
Length = 195
Score = 29.9 bits (68), Expect = 1.4
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 135 CYSLNRRAQHPLQFYVSSFKDKCKQE------IARYNGYEHWDVHIHEQAYLDLFKK 185
R++ PL+ + F+ E +A + G +H ++ + E+ LD +
Sbjct: 34 AALAARQSDPPLKTFSVGFEGSDYDEAPYAELVADHLGTDHHEIIVTEEELLDALPE 90
>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1170
Score = 29.7 bits (67), Expect = 2.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 80 QYAREHNIPLGPSR 93
++ARE IP+GP R
Sbjct: 357 RFAREQGIPVGPGR 370
>gnl|CDD|204043 pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7
transposase is composed of proteins TnsA and TnsB. DNA
breakage at the 5' end of the transposon is carried out
by TnsA, and breakage and joining at the 3' end is
carried out by TnsB. The N terminal domain of TnsA is
catalytic.
Length = 81
Score = 27.6 bits (62), Expect = 2.7
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 58 EKWLKWKP---IKRAKEREKLKQKKQYAREHNIPLG 90
++ K +++ + EK + +++YA E IP
Sbjct: 42 PLAIEVKYSEDLEKERTLEKFEIERRYAEEKGIPFR 77
>gnl|CDD|217910 pfam04122, CW_binding_2, Putative cell wall binding repeat 2. This
repeat is found in multiple tandem copies in proteins
including amidase enhancers and adhesins.
Length = 91
Score = 27.2 bits (61), Expect = 3.7
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 189 VYLTSDSDN-----IIEELDQSKVYIIGG 212
+ LT DS ++ KVYIIGG
Sbjct: 52 ILLTGDSLPSSTKDYLKSKKIKKVYIIGG 80
>gnl|CDD|227344 COG5011, COG5011, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 228
Score = 28.7 bits (64), Expect = 3.9
Identities = 10/63 (15%), Positives = 25/63 (39%)
Query: 52 KRKLKHEKWLKWKPIKRAKEREKLKQKKQYAREHNIPLGPSRKALKLVKMETSPNKLRVC 111
+ + +W++ A+ L++ + ++ NI L LK+ + + L C
Sbjct: 121 ESPVSLTQWIEKIIKILAENESLLEKTTKSGKKVNINLRVQLFELKISEGILEEDTLVAC 180
Query: 112 IDF 114
+
Sbjct: 181 GSY 183
>gnl|CDD|220338 pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710).
Members of this family are found, exclusively in the
vicinity of CRISPR repeats and other CRISPR-associated
(cas) genes, in Methanothermobacter thermautotrophicus
(Methanobacterium thermoformicicum), Thermus
thermophilus (Deinococcus-Thermus), Chloroflexus
aurantiacus (Chloroflexi), and Thermomicrobium roseum
(Thermomicrobia).
Length = 379
Score = 28.9 bits (65), Expect = 4.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 158 KQEIARY----NGYEHWDVHIHEQAYLDLFKKEDLVYLTSDSDNIIEEL 202
+++ A Y GY WD HE+A L K L+ L + +E L
Sbjct: 164 RKDYAAYKLLSEGYLAWDSFDHEEAADYLSKVLALLLLNNAEREGLEAL 212
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 29.0 bits (65), Expect = 4.7
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 262 AISSDKKSWKDALLETLPERKNAAAKNTGSEDAESCGEEEFEIKTGGEKSGNERCEAESC 321
A S KK+ K ++ NAA++N+ D +S +EEF+I ++ + E +
Sbjct: 411 ASVSSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTKNETKDT 470
Query: 322 DRSEHEKKVQDSTCEKKLLECDNK 345
E + D +C L D++
Sbjct: 471 AMEEEPQDKIDLSCFSGNLRRDDR 494
>gnl|CDD|187878 cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as Cas02710 family.
Length = 378
Score = 28.5 bits (64), Expect = 6.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 165 NGYEHWDVHIHEQAYLDLFKKEDLVYLTSDSDNIIEEL 202
GY WD HE+A L K L++L + +E L
Sbjct: 174 EGYLAWDSFDHEEAADYLSKVLALLHLLNAEREGLEAL 211
>gnl|CDD|235437 PRK05380, pyrG, CTP synthetase; Validated.
Length = 533
Score = 28.1 bits (64), Expect = 8.6
Identities = 9/12 (75%), Positives = 11/12 (91%), Gaps = 1/12 (8%)
Query: 80 QYAREHNIP-LG 90
+YARE+NIP LG
Sbjct: 366 RYARENNIPFLG 377
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.384
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,952,090
Number of extensions: 1591028
Number of successful extensions: 1253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 40
Length of query: 346
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 248
Effective length of database: 6,590,910
Effective search space: 1634545680
Effective search space used: 1634545680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)