RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11622
         (346 letters)



>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 29.4 bits (66), Expect = 0.65
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 16/102 (15%)

Query: 186 EDLVYLTSDSDNIIEELDQSKVYIIGGLVDHNQHKLLTLNKAREENIA----HGKLPIDT 241
            D+  L ++ + + E    +          +N  +   +     ++      HG L    
Sbjct: 28  NDVRLLLNNDNLLREGAAHA-------FAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGR 80

Query: 242 YLNMKTRQVLAVNHVFQILLAISSDK-----KSWKDALLETL 278
           +L+ + +     +H+ +       +      K W+DA    L
Sbjct: 81  FLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSAL 122


>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 333

 Score = 27.4 bits (59), Expect = 2.7
 Identities = 12/74 (16%), Positives = 28/74 (37%)

Query: 171 DVHIHEQAYLDLFKKEDLVYLTSDSDNIIEELDQSKVYIIGGLVDHNQHKLLTLNKAREE 230
           D+H+  + +    ++E+      ++  I  + +   + I G L   ++    TL KA   
Sbjct: 8   DIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIAL 67

Query: 231 NIAHGKLPIDTYLN 244
                +  I  +  
Sbjct: 68  LQIPKEHSIPVFAI 81


>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 209

 Score = 26.1 bits (56), Expect = 6.0
 Identities = 14/134 (10%), Positives = 38/134 (28%), Gaps = 3/134 (2%)

Query: 72  REKLKQKKQYAREHNIPLGPSRKALKLVKMETSPNKLRVCIDFSFDHLMTQKDICKCVKQ 131
              L++K          L  + +  ++  ++   ++    +   +          K    
Sbjct: 51  SSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFS 110

Query: 132 FNWCYSLNRRAQHPLQFYVSSFKDKCKQEIARYNGYEHWDVHIHE---QAYLDLFKKEDL 188
            +WC   +     P        +     +   +    + +    E   + +  L K   L
Sbjct: 111 LDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTL 170

Query: 189 VYLTSDSDNIIEEL 202
            +   D+   IE +
Sbjct: 171 NWKMVDASKSIEAV 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,275,011
Number of extensions: 60730
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 15
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)