Query psy11623
Match_columns 74
No_of_seqs 114 out of 1016
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 1.2E-32 2.6E-37 191.7 6.2 72 1-72 11-85 (372)
2 KOG0879|consensus 100.0 5.5E-30 1.2E-34 160.0 3.9 72 1-72 13-84 (177)
3 KOG0880|consensus 99.9 1.2E-26 2.7E-31 151.4 7.4 68 1-72 42-109 (217)
4 PLN03149 peptidyl-prolyl isome 99.9 4.7E-25 1E-29 143.2 7.6 71 1-71 21-91 (186)
5 cd01926 cyclophilin_ABH_like c 99.9 3.8E-24 8.3E-29 136.2 8.5 71 1-71 3-73 (164)
6 PTZ00060 cyclophilin; Provisio 99.9 1E-23 2.2E-28 136.6 8.4 70 1-70 18-88 (183)
7 COG0652 PpiB Peptidyl-prolyl c 99.9 9.5E-24 2.1E-28 134.4 6.2 57 7-71 3-59 (158)
8 PTZ00221 cyclophilin; Provisio 99.9 6.1E-23 1.3E-27 138.4 8.7 69 1-69 55-127 (249)
9 KOG0111|consensus 99.9 2.6E-23 5.7E-28 138.6 2.1 67 1-72 139-205 (298)
10 PRK10791 peptidyl-prolyl cis-t 99.8 3.8E-21 8.2E-26 122.8 6.9 54 9-70 5-58 (164)
11 cd01927 cyclophilin_WD40 cyclo 99.8 3.2E-21 6.9E-26 121.2 6.4 53 9-69 3-55 (148)
12 cd01920 cyclophilin_EcCYP_like 99.8 6.3E-21 1.4E-25 120.6 7.3 54 9-70 3-56 (155)
13 cd01921 cyclophilin_RRM cyclop 99.8 6E-21 1.3E-25 121.8 6.8 53 9-69 3-55 (166)
14 cd01928 Cyclophilin_PPIL3_like 99.8 7E-21 1.5E-25 120.3 6.2 53 9-69 6-58 (153)
15 cd01922 cyclophilin_SpCYP2_lik 99.8 8.7E-21 1.9E-25 119.1 6.6 53 9-69 3-55 (146)
16 PRK10903 peptidyl-prolyl cis-t 99.8 1.7E-20 3.7E-25 122.2 6.8 54 9-70 34-87 (190)
17 cd01923 cyclophilin_RING cyclo 99.8 2.1E-20 4.6E-25 118.6 6.7 53 9-69 5-57 (159)
18 PF00160 Pro_isomerase: Cyclop 99.8 7.2E-20 1.6E-24 114.5 8.7 59 2-70 1-59 (155)
19 cd01924 cyclophilin_TLP40_like 99.8 4.1E-20 8.8E-25 119.2 6.7 54 9-70 3-56 (176)
20 cd01925 cyclophilin_CeCYP16-li 99.8 5.8E-20 1.3E-24 117.8 6.5 53 9-69 11-63 (171)
21 cd00317 cyclophilin cyclophili 99.8 2.6E-19 5.6E-24 111.2 7.2 56 9-72 3-58 (146)
22 KOG0881|consensus 99.8 7.9E-20 1.7E-24 113.3 2.8 54 8-69 14-67 (164)
23 KOG0865|consensus 99.7 7.3E-19 1.6E-23 112.8 3.1 67 1-72 6-75 (167)
24 KOG0883|consensus 99.7 5.3E-18 1.2E-22 120.1 1.5 52 10-69 284-335 (518)
25 KOG0885|consensus 99.7 5.3E-17 1.1E-21 114.3 4.1 54 8-69 17-70 (439)
26 KOG0884|consensus 99.6 1.9E-16 4E-21 97.9 4.2 53 9-69 6-58 (161)
27 KOG0882|consensus 99.6 2.5E-16 5.5E-21 113.1 1.7 56 7-70 408-463 (558)
28 KOG0415|consensus 99.5 9.6E-15 2.1E-19 102.9 4.7 54 8-69 5-58 (479)
29 COG4070 Predicted peptidyl-pro 90.1 0.71 1.5E-05 34.0 4.6 23 14-36 377-399 (512)
30 PRK00969 hypothetical protein; 89.6 1.2 2.5E-05 33.5 5.5 25 14-38 379-403 (508)
31 TIGR03268 methan_mark_3 putati 89.0 0.41 9E-06 35.7 2.7 24 14-37 376-399 (503)
32 PF12903 DUF3830: Protein of u 88.4 0.74 1.6E-05 29.3 3.3 23 13-35 8-30 (147)
33 KOG0882|consensus 82.0 0.44 9.6E-06 35.5 0.0 51 11-69 110-160 (558)
34 PF02505 MCR_D: Methyl-coenzym 56.7 20 0.00043 23.0 3.3 33 10-49 72-104 (153)
35 TIGR03260 met_CoM_red_D methyl 43.8 53 0.0011 21.0 3.8 40 11-58 72-113 (150)
36 PF11314 DUF3117: Protein of u 32.6 14 0.00029 19.4 -0.1 14 12-25 28-41 (51)
37 cd07378 MPP_ACP5 Homo sapiens 32.6 67 0.0015 21.2 3.2 15 58-72 33-47 (277)
38 PF13496 DUF4120: Domain of un 32.4 22 0.00047 20.8 0.7 16 12-27 38-53 (95)
39 PF09383 NIL: NIL domain; Int 31.2 72 0.0016 17.1 2.7 16 7-22 40-55 (76)
40 COG4055 McrD Methyl coenzyme M 29.9 97 0.0021 20.0 3.4 42 10-58 80-123 (165)
41 KOG3422|consensus 27.1 1E+02 0.0022 20.9 3.3 30 10-39 138-167 (221)
42 PRK11536 6-N-hydroxylaminopuri 26.7 1.6E+02 0.0035 19.8 4.2 49 11-68 105-160 (223)
43 COG1765 Predicted redox protei 25.7 99 0.0021 18.9 2.9 26 14-39 91-116 (137)
44 PF12093 Corona_NS8: Coronavir 25.1 1E+02 0.0022 18.6 2.7 45 24-70 50-96 (118)
45 PF10484 MRP-S23: Mitochondria 23.3 80 0.0017 19.6 2.1 23 14-36 77-99 (127)
46 PLN00017 photosystem I reactio 23.0 40 0.00087 19.6 0.7 24 1-26 13-36 (90)
47 PF08400 phage_tail_N: Prophag 21.7 1.9E+02 0.0042 18.0 3.6 22 10-33 70-91 (134)
48 COG5429 Uncharacterized secret 21.1 1E+02 0.0022 21.4 2.4 25 15-39 43-71 (261)
49 COG3934 Endo-beta-mannanase [C 21.0 43 0.00093 25.7 0.7 36 23-69 151-186 (587)
50 COG0219 CspR Predicted rRNA me 20.8 2E+02 0.0043 18.5 3.5 25 15-39 3-27 (155)
51 PF09087 Cyc-maltodext_N: Cycl 20.5 1.1E+02 0.0025 17.6 2.2 21 2-22 52-72 (88)
No 1
>KOG0546|consensus
Probab=99.97 E-value=1.2e-32 Score=191.67 Aligned_cols=72 Identities=53% Similarity=0.912 Sum_probs=69.4
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc---cCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR---RDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~---~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||++++.+.|||+||||.|.||+|||||++||+|+.+ ..+++++|+|+.||||+++|||||||++.+||
T Consensus 11 ~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG 85 (372)
T KOG0546|consen 11 VFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG 85 (372)
T ss_pred EEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence 6999999999999999999999999999999999999986 66789999999999999999999999999987
No 2
>KOG0879|consensus
Probab=99.96 E-value=5.5e-30 Score=160.03 Aligned_cols=72 Identities=65% Similarity=1.129 Sum_probs=70.1
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
||||+++++.++|||.||||.|.+|+|+|||+++|+|++..++.+++||++.||||+++|||||||+.+++|
T Consensus 13 VF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 13 VFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred EEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCC
Confidence 799999999999999999999999999999999999999888999999999999999999999999999886
No 3
>KOG0880|consensus
Probab=99.94 E-value=1.2e-26 Score=151.43 Aligned_cols=68 Identities=46% Similarity=0.763 Sum_probs=63.5
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||.++++..|||+|+||...+|+|++||++||.+.. ++.+|++++||||+|||||||||++.++|
T Consensus 42 V~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~----~~~gY~gS~FhRVi~nfmIQGGd~t~g~g 109 (217)
T KOG0880|consen 42 VYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGE----KGYGYKGSKFHRVIPNFMIQGGDFTKGDG 109 (217)
T ss_pred EEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCC----CCcccCCceeeeeecCceeecCccccCCC
Confidence 799999999999999999999999999999999999532 37889999999999999999999999876
No 4
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.92 E-value=4.7e-25 Score=143.21 Aligned_cols=71 Identities=59% Similarity=1.045 Sum_probs=63.4
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
|||||++++++.|||+||||.+.+|+||+||++||++++...+...+|+++.||||+|+++||+||+..++
T Consensus 21 v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~ 91 (186)
T PLN03149 21 VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGD 91 (186)
T ss_pred EEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCC
Confidence 68999999999999999999999999999999999987643444567999999999999999999986443
No 5
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.91 E-value=3.8e-24 Score=136.20 Aligned_cols=71 Identities=55% Similarity=0.969 Sum_probs=60.9
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
||||+++++++.|+|+||||.+.||+||+||++||++..+...+...|+++.||||+|+++||+||+..++
T Consensus 3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~ 73 (164)
T cd01926 3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGN 73 (164)
T ss_pred EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCC
Confidence 69999999999999999999999999999999999875421112345999999999999999999987543
No 6
>PTZ00060 cyclophilin; Provisional
Probab=99.90 E-value=1e-23 Score=136.59 Aligned_cols=70 Identities=44% Similarity=0.823 Sum_probs=61.2
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc-cCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR-RDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~-~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
||||+++++++.|+|+||||.+.||+||+||++||++... ..++...|+++.||||+|+++||+||+...
T Consensus 18 v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~ 88 (183)
T PTZ00060 18 VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH 88 (183)
T ss_pred EEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC
Confidence 6999999999999999999999999999999999987542 122344599999999999999999998754
No 7
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.5e-24 Score=134.39 Aligned_cols=57 Identities=42% Similarity=0.688 Sum_probs=53.7
Q ss_pred eCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 7 TPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 7 ~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
+..|+.|+|+||||++.||+||+||++||+.++ |+|+.||||+|+|||||||+..+.
T Consensus 3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~--------Ydg~~FHRVi~~FmiQgGd~~~~~ 59 (158)
T COG0652 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGDPTGGD 59 (158)
T ss_pred eeeccCCCEEEEECCCcCcHHHHHHHHHHHcCC--------CCCceEEEeecCceeecCCCCCCC
Confidence 457889999999999999999999999999999 999999999999999999999764
No 8
>PTZ00221 cyclophilin; Provisional
Probab=99.89 E-value=6.1e-23 Score=138.38 Aligned_cols=69 Identities=32% Similarity=0.496 Sum_probs=61.2
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc---cCCcccccCCCeEEEEecC-CEEEeccCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR---RDAVPIGFKGASFHRVIKD-FMIQGGDFVN 69 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~---~~~~~~~Y~~~~f~ri~~~-~~iq~Gd~~~ 69 (74)
||||+++++.+.|+|+||||.+.||+||+||++||+|+++ ..+..++|+++.||||+++ +|||+||+..
T Consensus 55 Vfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 55 AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred EEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 7999999999999999999999999999999999998764 1233456999999999985 8999999864
No 9
>KOG0111|consensus
Probab=99.87 E-value=2.6e-23 Score=138.63 Aligned_cols=67 Identities=48% Similarity=0.789 Sum_probs=65.2
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
||+|+.+.+...|||+++|..|.+|+|++||+.||+++. +++|+||.||||||.||+||||++++||
T Consensus 139 v~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~-----gfgykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 139 VYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEA-----GFGYKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhhheeecccccceEEEeecccCChhhhhhhhhhccccC-----ccCccccchhhhhhhhhccCCccccCCC
Confidence 699999999999999999999999999999999999998 8899999999999999999999999987
No 10
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.84 E-value=3.8e-21 Score=122.81 Aligned_cols=54 Identities=39% Similarity=0.785 Sum_probs=51.3
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+|++||++||+.++ |+++.||||+|+|||||||+..+
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQgGd~~~~ 58 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEPG 58 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEecCcEEEeCCcCCC
Confidence 5789999999999999999999999999999 99999999999999999997654
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.84 E-value=3.2e-21 Score=121.22 Aligned_cols=53 Identities=40% Similarity=0.676 Sum_probs=50.5
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.||||+|+++||+||+..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGDPTG 55 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 5789999999999999999999999999999 9999999999999999999863
No 12
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.84 E-value=6.3e-21 Score=120.62 Aligned_cols=54 Identities=39% Similarity=0.750 Sum_probs=51.1
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|++|||+||+...
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQ~Gd~~~~ 56 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKGF--------YDNTIFHRVISGFVIQGGGFTPD 56 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcCC--------CCCCEEEEEeCCcEEEeCCCCCC
Confidence 4789999999999999999999999999999 99999999999999999998754
No 13
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.84 E-value=6e-21 Score=121.77 Aligned_cols=53 Identities=30% Similarity=0.590 Sum_probs=50.7
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.||||+|+++||+||+..
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~--------Y~g~~fhrvi~~f~iQgGd~~~ 55 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGDPTG 55 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcCC--------cCCCEEEEEeCCceEEECCcCC
Confidence 4789999999999999999999999999999 9999999999999999999864
No 14
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.83 E-value=7e-21 Score=120.27 Aligned_cols=53 Identities=42% Similarity=0.807 Sum_probs=50.8
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.|||++|++++|+||+..
T Consensus 6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~f~iq~Gd~~~ 58 (153)
T cd01928 6 HTNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGDPTG 58 (153)
T ss_pred EEccccEEEEEcCCCCcHHHHHHHHHHhcCc--------cCCcEEEEeCCCCEEEccccCC
Confidence 5789999999999999999999999999999 9999999999999999999864
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.83 E-value=8.7e-21 Score=119.07 Aligned_cols=53 Identities=42% Similarity=0.812 Sum_probs=50.5
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.|||++|+++||+||+..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGDPTG 55 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 4789999999999999999999999999999 9999999999999999999863
No 16
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.83 E-value=1.7e-20 Score=122.21 Aligned_cols=54 Identities=37% Similarity=0.715 Sum_probs=51.1
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+|++||++||+.++ |+++.|||++|+||||+||+...
T Consensus 34 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRvi~~f~iQgG~~~~~ 87 (190)
T PRK10903 34 TTSAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQ 87 (190)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEeCCceEEeCCcCCC
Confidence 4789999999999999999999999999999 99999999999999999997653
No 17
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.82 E-value=2.1e-20 Score=118.63 Aligned_cols=53 Identities=42% Similarity=0.810 Sum_probs=50.6
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+++||+||+..
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~Gd~~~ 57 (159)
T cd01923 5 HTNKGDLNLELHCDKAPKACENFIKLCKKGY--------YDGTIFHRSIRNFMIQGGDPTG 57 (159)
T ss_pred EEccccEEEEEeCCCChHHHHHHHHHHhcCc--------cCCcEEEEEeCCcEEEecccCC
Confidence 4789999999999999999999999999999 9999999999999999999864
No 18
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.82 E-value=7.2e-20 Score=114.48 Aligned_cols=59 Identities=46% Similarity=0.854 Sum_probs=55.6
Q ss_pred eEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 2 SFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 2 ~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
|+||..++ .|+|+||||.+.||++|+||++||+.+. |+++.|||++|+++||+||+...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~ri~~~~~i~~G~~~~~ 59 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF--------YDGTKFHRIIPNFVIQGGDPTGN 59 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS--------STTEBEEEEETTTEEEESSTTTS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc--------cCCceeecccccceeeeeeccCC
Confidence 78898866 9999999999999999999999999998 99999999999999999998764
No 19
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.82 E-value=4.1e-20 Score=119.23 Aligned_cols=54 Identities=30% Similarity=0.468 Sum_probs=51.3
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+||||+||+...
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRVi~~fviQgGdp~~~ 56 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGF--------YDGMEFHRVEGGFVVQTGDPQGK 56 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCC--------cCCCEEEEecCCcEEEecCCCCC
Confidence 5789999999999999999999999999999 99999999999999999998754
No 20
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.81 E-value=5.8e-20 Score=117.84 Aligned_cols=53 Identities=36% Similarity=0.718 Sum_probs=50.5
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.+|+||+||++||+.++ |+++.|||++|+++||+||+..
T Consensus 11 ~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~--------Y~~~~f~Rvi~~f~iQgGd~~~ 63 (171)
T cd01925 11 KTTAGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGDPTG 63 (171)
T ss_pred EEccccEEEEEeCCCChHHHHHHHHHHhcCC--------CCCCEEEEEcCCcEEEccccCC
Confidence 5789999999999999999999999999999 9999999999999999999863
No 21
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.79 E-value=2.6e-19 Score=111.16 Aligned_cols=56 Identities=46% Similarity=0.833 Sum_probs=51.9
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
.|+.|+|+||||.+.+|++|+||++||++++ |+++.|||++|+++||+||+....+
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~--------Y~~~~f~rv~~~~~iq~Gd~~~~~~ 58 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTGTGG 58 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcCC--------cCCCEEEEEeCCCeEEECCCCCCCC
Confidence 4667999999999999999999999999999 9999999999999999999876543
No 22
>KOG0881|consensus
Probab=99.78 E-value=7.9e-20 Score=113.35 Aligned_cols=54 Identities=39% Similarity=0.799 Sum_probs=51.5
Q ss_pred CCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 8 PTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 8 ~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.+|.+|.|++|||-..||+||+||.+|++.++ |+|..||||+++|||||||++.
T Consensus 14 LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgY--------Yn~v~FHRii~DFmiQGGDPTG 67 (164)
T KOG0881|consen 14 LETSMGKITLELYWKHAPRTCQNFAELARRGY--------YNGVIFHRIIKDFMIQGGDPTG 67 (164)
T ss_pred EeecccceehhhhhhcCcHHHHHHHHHHhccc--------ccceeeeehhhhheeecCCCCC
Confidence 35788999999999999999999999999999 9999999999999999999985
No 23
>KOG0865|consensus
Probab=99.74 E-value=7.3e-19 Score=112.83 Aligned_cols=67 Identities=51% Similarity=0.930 Sum_probs=62.1
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEE---EecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR---VIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~r---i~~~~~iq~Gd~~~~~g 72 (74)
||+|++++++++|+++++||.|.+|+|+|||..||++++ +++|+++.||| .++++|+|+||++.+||
T Consensus 6 vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgek-----g~~yk~s~fhr~~~~~~~fm~qggDft~hng 75 (167)
T KOG0865|consen 6 VFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEK-----GFGYKGSCFHRLIPIIPGFMCQGGDFTCHNG 75 (167)
T ss_pred eeeeeeecCccccccceecccccCcchHhhhhhcccCCC-----ccccccchhhhccccccceeeccCcccccCC
Confidence 799999999999999999999999999999999999876 77799999999 44579999999998886
No 24
>KOG0883|consensus
Probab=99.69 E-value=5.3e-18 Score=120.14 Aligned_cols=52 Identities=38% Similarity=0.786 Sum_probs=50.4
Q ss_pred eeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 10 ~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
|+.|.|-+||++|.+|++|+||++||+.+| |+|+.|||.|.|||||||||+.
T Consensus 284 Tn~G~lNlELhcd~~P~aceNFI~lc~~gY--------Ynnt~FHRsIrnFmiQGGDPTG 335 (518)
T KOG0883|consen 284 TNHGPLNLELHCDYAPRACENFITLCKNGY--------YNNTIFHRSIRNFMIQGGDPTG 335 (518)
T ss_pred ccCCceeeEeecCcchHHHHHHHHHHhccc--------ccchHHHHHHHHHeeeCCCCCC
Confidence 678999999999999999999999999999 9999999999999999999985
No 25
>KOG0885|consensus
Probab=99.66 E-value=5.3e-17 Score=114.30 Aligned_cols=54 Identities=33% Similarity=0.689 Sum_probs=51.6
Q ss_pred CCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 8 PTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 8 ~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
-.|+.|+|.|||++..||++|+||++||..++ |+|+.|||++|+|.+||||+..
T Consensus 17 l~TT~G~I~iELW~kE~P~acrnFiqKOGegy--------y~nt~fhrlvp~f~~Qggdp~~ 70 (439)
T KOG0885|consen 17 LKTTKGDIDIELWAKECPKACRNFIQLCLEGY--------YDNTEFHRLVPGFLVQGGDPTG 70 (439)
T ss_pred EEeccCceeeeehhhhhhHHHHHHHHHHHhcc--------ccCceeeeeccchhcccCCCCC
Confidence 35789999999999999999999999999999 9999999999999999999985
No 26
>KOG0884|consensus
Probab=99.64 E-value=1.9e-16 Score=97.93 Aligned_cols=53 Identities=40% Similarity=0.838 Sum_probs=50.8
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
-+..|+|.||||.+.+|+|||||+.||...+ |++|.|||-+|+||+|+||+..
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~~--------~n~~~~~~~~~~f~v~~~~~~~ 58 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASDY--------YNGCIFHRNIKGFMVQTGDPTH 58 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhhh--------ccceeecCCCCCcEEEeCCCCC
Confidence 4678999999999999999999999999999 9999999999999999999985
No 27
>KOG0882|consensus
Probab=99.60 E-value=2.5e-16 Score=113.12 Aligned_cols=56 Identities=34% Similarity=0.614 Sum_probs=52.4
Q ss_pred eCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 7 TPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 7 ~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
+--|+.|+|.|.||++.||+|+|||-.-|+.+| |+|..||||+++||||+|||...
T Consensus 408 iihtt~gdi~~kl~p~ecpktvenf~th~rngy--------y~~~~fhriik~fmiqtgdp~g~ 463 (558)
T KOG0882|consen 408 IIHTTQGDIHIKLYPEECPKTVENFTTHSRNGY--------YDNHTFHRIIKGFMIQTGDPLGD 463 (558)
T ss_pred EEEecccceEEEecccccchhhhhhhccccCcc--------ccCcchHHhhhhheeecCCCCCC
Confidence 345889999999999999999999999999999 99999999999999999999853
No 28
>KOG0415|consensus
Probab=99.53 E-value=9.6e-15 Score=102.87 Aligned_cols=54 Identities=30% Similarity=0.588 Sum_probs=52.2
Q ss_pred CCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 8 PTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 8 ~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
-.|++|+|+|.||.+.+|+||.||++||+-+| |+.|.||.|..+|.+|+|||+.
T Consensus 5 ieTtlGDlvIDLf~~erP~~clNFLKLCk~KY--------YN~clfh~vq~~f~aQTGDPtG 58 (479)
T KOG0415|consen 5 IETTLGDLVIDLFVKERPRTCLNFLKLCKIKY--------YNFCLFHTVQRDFTAQTGDPTG 58 (479)
T ss_pred EEeecccEEeeeecccCcHHHHHHHHHHhHhh--------cccceeeeccccceeecCCCCC
Confidence 46889999999999999999999999999999 9999999999999999999986
No 29
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.71 Score=33.99 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEecCCCChhhHHHHHHHHh
Q psy11623 14 RMIFELFADVVPKTSENFRQFCT 36 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~ 36 (74)
=|.||||.+.||+++.-|+.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 46899999999999999998764
No 30
>PRK00969 hypothetical protein; Provisional
Probab=89.64 E-value=1.2 Score=33.45 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.4
Q ss_pred eEEEEecCCCChhhHHHHHHHHhcC
Q psy11623 14 RMIFELFADVVPKTSENFRQFCTGE 38 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~~~ 38 (74)
=|.||||.+.||+|+.-|+++.--.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~ 403 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLK 403 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCc
Confidence 4689999999999999999876543
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=88.95 E-value=0.41 Score=35.73 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred eEEEEecCCCChhhHHHHHHHHhc
Q psy11623 14 RMIFELFADVVPKTSENFRQFCTG 37 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~~ 37 (74)
=|.|+||.+.||+|+.-|+++.--
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL 399 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGL 399 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCC
Confidence 468999999999999999987643
No 32
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=88.41 E-value=0.74 Score=29.27 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.5
Q ss_pred eeEEEEecCCCChhhHHHHHHHH
Q psy11623 13 GRMIFELFADVVPKTSENFRQFC 35 (74)
Q Consensus 13 G~i~ieL~~~~~P~t~~nF~~l~ 35 (74)
-..+.+|..|.||+||+-|.+.=
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-
T ss_pred eEEEEEEcccCChHHHHHHHHhC
Confidence 36789999999999999998764
No 33
>KOG0882|consensus
Probab=81.96 E-value=0.44 Score=35.55 Aligned_cols=51 Identities=27% Similarity=0.362 Sum_probs=46.1
Q ss_pred eeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 11 EIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 11 ~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
..-.|.++++.+-.|.-++-|..+|.-.+ +++..+.+|.+.+++|.||...
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~--------fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGY--------FKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccce--------ecccccCceEEEEeecccccee
Confidence 34489999999999999999999999988 9999999999999999999753
No 34
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=56.70 E-value=20 Score=23.00 Aligned_cols=33 Identities=30% Similarity=0.717 Sum_probs=25.9
Q ss_pred eeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccC
Q psy11623 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFK 49 (74)
Q Consensus 10 ~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~ 49 (74)
...|||.+||-.+ -...+...+.|+... +++|+
T Consensus 72 V~vGri~lele~~--~~~ie~I~~iCee~l-----pf~y~ 104 (153)
T PF02505_consen 72 VKVGRIILELEDE--EDVIEKIREICEEVL-----PFGYD 104 (153)
T ss_pred EEEeEEEEEecCc--HHHHHHHHHHHHHhC-----CCceE
Confidence 3469999999996 667788889999876 55553
No 35
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=43.76 E-value=53 Score=21.01 Aligned_cols=40 Identities=28% Similarity=0.606 Sum_probs=31.6
Q ss_pred eeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCe--EEEEec
Q psy11623 11 EIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGAS--FHRVIK 58 (74)
Q Consensus 11 ~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~--f~ri~~ 58 (74)
..|||.+||..+ ...++..+.|+.-. +++|+=.. |-|-.|
T Consensus 72 ~VGrI~le~~~~---~~i~~I~eiC~e~~-----pF~y~i~~g~f~r~~~ 113 (150)
T TIGR03260 72 QVGRIILELEDE---DIVEEIEEICKEML-----PFGYEVRVGKFLRTKP 113 (150)
T ss_pred EEeEEEEEecCH---HHHHHHHHHHHhhC-----CCceEeeeeeEeecCC
Confidence 469999999854 67888899999988 67787665 777655
No 36
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.60 E-value=14 Score=19.38 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=10.8
Q ss_pred eeeEEEEecCCCCh
Q psy11623 12 IGRMIFELFADVVP 25 (74)
Q Consensus 12 ~G~i~ieL~~~~~P 25 (74)
-||+++||-++.|-
T Consensus 28 GGRLVvEl~~~Ea~ 41 (51)
T PF11314_consen 28 GGRLVVELNPDEAK 41 (51)
T ss_pred CcEEEEEeCHHHHH
Confidence 48999999877543
No 37
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=32.58 E-value=67 Score=21.17 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=12.0
Q ss_pred cCCEEEeccCCCCCC
Q psy11623 58 KDFMIQGGDFVNVSM 72 (74)
Q Consensus 58 ~~~~iq~Gd~~~~~g 72 (74)
|+++|..||....+|
T Consensus 33 ~dfvv~~GD~~y~~g 47 (277)
T cd07378 33 PDFILSLGDNFYDDG 47 (277)
T ss_pred CCEEEeCCCccccCC
Confidence 788999999876655
No 38
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=32.35 E-value=22 Score=20.83 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.4
Q ss_pred eeeEEEEecCCCChhh
Q psy11623 12 IGRMIFELFADVVPKT 27 (74)
Q Consensus 12 ~G~i~ieL~~~~~P~t 27 (74)
-++-.||||.|.||-+
T Consensus 38 ~~~ceIELY~DfApyS 53 (95)
T PF13496_consen 38 NHPCEIELYYDFAPYS 53 (95)
T ss_pred CCCeEEEEEeccCccc
Confidence 3567899999999975
No 39
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=31.21 E-value=72 Score=17.07 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.0
Q ss_pred eCCeeeeeEEEEecCC
Q psy11623 7 TPTKEIGRMIFELFAD 22 (74)
Q Consensus 7 ~~~~~~G~i~ieL~~~ 22 (74)
+.+++.|.++++|-.+
T Consensus 40 i~~~~~G~l~l~l~g~ 55 (76)
T PF09383_consen 40 IQGTPFGILILELPGD 55 (76)
T ss_dssp ETTEEEEEEEEEEES-
T ss_pred cCCeeEEEEEEEEECC
Confidence 3778999999999765
No 40
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=29.95 E-value=97 Score=19.97 Aligned_cols=42 Identities=26% Similarity=0.567 Sum_probs=31.2
Q ss_pred eeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccC--CCeEEEEec
Q psy11623 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFK--GASFHRVIK 58 (74)
Q Consensus 10 ~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~--~~~f~ri~~ 58 (74)
...|+|.+++-++. .+.+...+.|..-. +++|+ --.|.|..|
T Consensus 80 VkvGri~~eie~e~--~~~e~ie~ic~e~l-----Pf~y~v~vG~F~r~kp 123 (165)
T COG4055 80 VKVGRIILEIEDED--ETMEKIEEICDEML-----PFGYEVRVGKFTRRKP 123 (165)
T ss_pred EEeeEEEEEecCcH--hHHHHHHHHHHHhC-----CCceeeeeeeeeccCC
Confidence 34699999999987 38999999999887 66665 234554443
No 41
>KOG3422|consensus
Probab=27.10 E-value=1e+02 Score=20.92 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.1
Q ss_pred eeeeeEEEEecCCCChhhHHHHHHHHhcCc
Q psy11623 10 KEIGRMIFELFADVVPKTSENFRQFCTGEF 39 (74)
Q Consensus 10 ~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~ 39 (74)
...|+|.+|.-.|..-.-++.|+..+..+.
T Consensus 138 V~~GrIl~EmgG~~~~~~Ar~al~~aa~kl 167 (221)
T KOG3422|consen 138 VKAGRILFEMGGDVEEEEARQALLQAAHKL 167 (221)
T ss_pred ecCCcEEEEeCCcccHHHHHHHHHHHHhcC
Confidence 467999999999977788889998887664
No 42
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=26.71 E-value=1.6e+02 Score=19.84 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=29.7
Q ss_pred eeeeEEEEecCCCChhhH--H-----HHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCC
Q psy11623 11 EIGRMIFELFADVVPKTS--E-----NFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFV 68 (74)
Q Consensus 11 ~~G~i~ieL~~~~~P~t~--~-----nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~ 68 (74)
.+|..++|+-.--.|... . ++.+...... +. --+.||++...|+.||..
T Consensus 105 riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g--------~~-G~Y~RVL~~G~V~~GD~v 160 (223)
T PRK11536 105 RWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSG--------KC-GWLYRVIAPGKVSADAPL 160 (223)
T ss_pred EECCEEEEEecCCCCCCchhhhccchhHHHHHHhhC--------Cc-EEEEEEECCcEEcCCCEE
Confidence 567888888776666422 1 2222221111 11 238899999999999975
No 43
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=25.74 E-value=99 Score=18.89 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=22.6
Q ss_pred eEEEEecCCCChhhHHHHHHHHhcCc
Q psy11623 14 RMIFELFADVVPKTSENFRQFCTGEF 39 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~~~~ 39 (74)
+|.+.+..+..+...+.+++++..++
T Consensus 91 ~i~~~v~gd~~~e~~~~~i~~a~ek~ 116 (137)
T COG1765 91 NIHFVVKGDLDEEKLKRAVELAEEKY 116 (137)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhccc
Confidence 47888889999999999999998764
No 44
>PF12093 Corona_NS8: Coronavirus NS8 protein; InterPro: IPR022722 This family of proteins is functionally uncharacterised. This protein is found in coronaviruses. Proteins in this family are typically between 39 to 121 amino acids in length. This protein has two conserved sequence motifs: EDPCP and INCQ.
Probab=25.07 E-value=1e+02 Score=18.58 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=23.6
Q ss_pred ChhhHHHHHHHHhcCcccCCcccccC--CCeEEEEecCCEEEeccCCCC
Q psy11623 24 VPKTSENFRQFCTGEFRRDAVPIGFK--GASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 24 ~P~t~~nF~~l~~~~~~~~~~~~~Y~--~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
-|+..+...+||.|+++.+ .+++|. ++....-.| +-|.+.|+..+
T Consensus 50 ~~R~sArL~~Lc~g~yG~~-~p~Hye~~~~~~~sC~P-~~INCQ~P~~G 96 (118)
T PF12093_consen 50 GTRKSARLVQLCEGDYGKR-LPIHYEMFGNYTISCEP-VEINCQDPPVG 96 (118)
T ss_pred cCccchhHhhhccccCCcE-eeeehhhhcceEEEeee-eEEeccCCCCc
Confidence 3456677889999998321 223332 222222334 55666665543
No 45
>PF10484 MRP-S23: Mitochondrial ribosomal protein S23; InterPro: IPR023611 This entry represents a domain found in both the mitochondrial ribosomal 23S and 25S proteins. The function of this conserved region is not known. In Saccharomyces cerevisiae (Baker's yeast) the mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome
Probab=23.31 E-value=80 Score=19.63 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhhHHHHHHHHh
Q psy11623 14 RMIFELFADVVPKTSENFRQFCT 36 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~ 36 (74)
.-.+.|+......+|++|++..+
T Consensus 77 ~~~~~L~~~~~~s~~Q~Fv~kY~ 99 (127)
T PF10484_consen 77 PEAFNLFDPNFKSTCQRFVEKYQ 99 (127)
T ss_pred CcceecccCCCCcHHHHHHHHHH
Confidence 33788999999999999998775
No 46
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=22.95 E-value=40 Score=19.64 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=18.5
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChh
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPK 26 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~ 26 (74)
||||+.--+.+.| .-+||...+|.
T Consensus 13 vYFDL~Di~nTTG--sWDlYG~d~~s 36 (90)
T PLN00017 13 VYFDLGDLENTTG--SWDLYGSDAPS 36 (90)
T ss_pred eEEEhhhhccCcc--cceeeccCCCC
Confidence 7999998888888 45788877663
No 47
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=21.65 E-value=1.9e+02 Score=18.02 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.9
Q ss_pred eeeeeEEEEecCCCChhhHHHHHH
Q psy11623 10 KEIGRMIFELFADVVPKTSENFRQ 33 (74)
Q Consensus 10 ~~~G~i~ieL~~~~~P~t~~nF~~ 33 (74)
..+| .|.+|.|..|-|...|+.
T Consensus 70 ~~vG--~I~V~~dS~pGTLN~fL~ 91 (134)
T PF08400_consen 70 VYVG--DITVYEDSKPGTLNDFLT 91 (134)
T ss_pred eeEE--EEEEecCCCCCcHHHHhh
Confidence 3446 568899999999999984
No 48
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=21.07 E-value=1e+02 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEEecCC----CChhhHHHHHHHHhcCc
Q psy11623 15 MIFELFAD----VVPKTSENFRQFCTGEF 39 (74)
Q Consensus 15 i~ieL~~~----~~P~t~~nF~~l~~~~~ 39 (74)
-|+|||.. +||..=+||.+++....
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~~~ 71 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADDPG 71 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccCCC
Confidence 48999975 59999999999997654
No 49
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=21.02 E-value=43 Score=25.65 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=29.8
Q ss_pred CChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 23 VVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 23 ~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.+|+...||..+.++-+ ..+.++-|+.+++-||+..
T Consensus 151 ~~p~s~N~f~~w~~emy-----------~yiK~ldd~hlvsvGD~~s 186 (587)
T COG3934 151 EAPISVNNFWDWSGEMY-----------AYIKWLDDGHLVSVGDPAS 186 (587)
T ss_pred cccCChhHHHHHHHHHH-----------HHhhccCCCCeeecCCcCC
Confidence 38999999999988765 4466788999999999865
No 50
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=20.85 E-value=2e+02 Score=18.52 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.6
Q ss_pred EEEEecCCCChhhHHHHHHHHhcCc
Q psy11623 15 MIFELFADVVPKTSENFRQFCTGEF 39 (74)
Q Consensus 15 i~ieL~~~~~P~t~~nF~~l~~~~~ 39 (74)
+.|-||.-..|.-+-|.+.+|..-.
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca~tg 27 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCAATG 27 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHHhcC
Confidence 5688999999999999999997653
No 51
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=20.54 E-value=1.1e+02 Score=17.61 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=13.1
Q ss_pred eEeeeeCCeeeeeEEEEecCC
Q psy11623 2 SFPTGTPTKEIGRMIFELFAD 22 (74)
Q Consensus 2 ~~di~~~~~~~G~i~ieL~~~ 22 (74)
|.++.+.+...|.+.|.+...
T Consensus 52 Fv~L~i~~akpg~~~i~~~~~ 72 (88)
T PF09087_consen 52 FVYLDISDAKPGTFTINFKKG 72 (88)
T ss_dssp EEEEEE-T--SEEEEEEEEET
T ss_pred EEEEecCCCCCcEEEEEEEcC
Confidence 455555588889999988755
Done!