RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11623
(74 letters)
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 116 bits (293), Expect = 3e-35
Identities = 50/60 (83%), Positives = 57/60 (95%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVIKDFMIQGGDFVN
Sbjct: 22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVN 81
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 117 bits (295), Expect = 4e-35
Identities = 38/60 (63%), Positives = 50/60 (83%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+K FHRVIK+FMIQGGDF+N
Sbjct: 71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFIN 130
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB:
2wfj_A* 2gw2_A
Length = 179
Score = 109 bits (276), Expect = 9e-33
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHRVIKDFMIQGGD 66
+ GR++FELF+DV PKT ENFR CTGE + P+ +K FHRV+KDFM+QGGD
Sbjct: 21 QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGD 80
Query: 67 FVN 69
F
Sbjct: 81 FSE 83
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 109 bits (276), Expect = 1e-32
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHRVIKDFMIQGGD 66
GR++ EL+ D+ P+T NF CTG + P+ +KG++FHRVIK+FMIQGGD
Sbjct: 18 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGD 77
Query: 67 FVN 69
F
Sbjct: 78 FTK 80
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 109 bits (276), Expect = 1e-32
Identities = 29/63 (46%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHRVIKDFMIQGGD 66
+ +GR++F+LF+D+ PKT +NF C+GE + + +KG++FHRV+K+FMIQGGD
Sbjct: 31 EPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGD 90
Query: 67 FVN 69
F
Sbjct: 91 FSE 93
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 113 bits (285), Expect = 2e-32
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEF---RRDAVPIGFKGASFHRVIKDFMIQGGD 66
+ +GR++ ELFAD+VPKT+ENFR CTGE P+ FKG FHR+IK FMIQGGD
Sbjct: 27 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGD 86
Query: 67 FVN 69
F N
Sbjct: 87 FSN 89
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 108 bits (272), Expect = 4e-32
Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
GR+ ELFAD VP T+ENFR CTGE + P+ + G+ FHR+I FMIQGGDF
Sbjct: 31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDF 90
Query: 68 VN 69
Sbjct: 91 TR 92
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 107 bits (270), Expect = 6e-32
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKDFMIQGGDFV 68
GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+I FM QGGD
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 69 N 69
N
Sbjct: 75 N 75
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 106 bits (267), Expect = 2e-31
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
K GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR+I +FMIQGGDF
Sbjct: 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF 74
Query: 68 VN 69
Sbjct: 75 TR 76
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 107 bits (268), Expect = 4e-31
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEF------------RRDAVPIGFKGASFHRVI 57
+ IGR+ +LF D P ENF Q G+ + ++G FH V+
Sbjct: 26 EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVL 85
Query: 58 KDFMIQGGDFVN 69
+ I GD N
Sbjct: 86 HNNYIVSGDIYN 97
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 102 bits (257), Expect = 6e-30
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+ +GR+ LF P T+ENFRQ CTGE G+K + FHRVI++FMIQGGDF N
Sbjct: 23 EPLGRITIGLFGKDAPLTTENFRQLCTGEH-----GFGYKDSIFHRVIQNFMIQGGDFTN 77
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity,
rotamase, RNA-binding, cyclosporin, cyclophilin,
beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 102 bits (257), Expect = 6e-30
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+ GR++ EL +D+VP+T+ENFR CTGE G+ FHRVI FM QGGDFV
Sbjct: 22 GDAGRIVMELRSDIVPRTAENFRALCTGER-----GFGYHNCCFHRVIPQFMCQGGDFVK 76
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich,
cyclosporin, endoplasmic reticulum, glycoprot
isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A*
1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 102 bits (257), Expect = 9e-30
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+++GR+IF LF VPKT +NF TGE G+K + FHRVIKDFMIQGGDF
Sbjct: 27 EDVGRVIFGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDFMIQGGDFTR 81
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 101 bits (254), Expect = 2e-29
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
K GR+ L +DVVP T+ENFR CT E GFKG+SFHR+I FM QGGDF N
Sbjct: 23 KPAGRIQMLLRSDVVPMTAENFRCLCTHEK-----GFGFKGSSFHRIIPQFMCQGGDFTN 77
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding,
Asp F 11, allergen, rotamase; 1.85A {Aspergillus
fumigatus} SCOP: b.62.1.1
Length = 172
Score = 99 bits (250), Expect = 5e-29
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
++GR++F LF VPKT++NFR+ C G++ ++FHR+I +FMIQGGDF
Sbjct: 19 TKVGRIVFNLFDKDVPKTAKNFRELCKRP-----AGEGYRESTFHRIIPNFMIQGGDFTR 73
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 99.9 bits (250), Expect = 6e-29
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
K +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI FM Q GDF N
Sbjct: 15 KPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVIPSFMCQAGDFTN 69
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 99.6 bits (249), Expect = 1e-28
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+ +GR+ FELFAD VPKT+ENFR TGE G+KG+ FHR+I FM QGGDF
Sbjct: 34 EPLGRVSFELFADKVPKTAENFRALSTGEK-----GFGYKGSCFHRIIPGFMCQGGDFTR 88
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 98.4 bits (246), Expect = 2e-28
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
K GR++F+L+ + VPKT++NFR+ TG+ G+K + FHRVI FM+QGGDF
Sbjct: 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQH-----GFGYKDSIFHRVIPQFMLQGGDFTR 68
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI,
UW, decode, cytoplasm, rotamase, structural genomics;
HET: PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 99.3 bits (248), Expect = 2e-28
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+ +GR++ +L D+VPKT++NFR C G+KG++FHR+I FM+QGGD+
Sbjct: 39 ESLGRIVMKLEDDIVPKTAKNFRTLCERPK-----GEGYKGSTFHRIIPGFMVQGGDYTA 93
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium,
SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 72.6 bits (179), Expect = 3e-18
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
+G + LF KT +NF + + FHRVIK FM+Q GD
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSINGY--------YNNCIFHRVIKHFMVQTGDP 61
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP:
b.62.1.1
Length = 176
Score = 70.0 bits (172), Expect = 4e-17
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G + +LF PKT ENF + + G +FHR+IK FMIQ GD
Sbjct: 31 GDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGDP 77
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 70.1 bits (172), Expect = 6e-17
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
+G ++ EL+ PKT +NF + + + G FHR+IKDFMIQGGD
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFHRIIKDFMIQGGDP 67
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 69.7 bits (171), Expect = 8e-17
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
G + EL AD+ P+ ++F + C ++ F FHR I++FMIQGG
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY--------FDDTIFHRCIRNFMIQGGRAEL 64
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 68.0 bits (167), Expect = 2e-16
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
+G ++ EL+ PKT +NF + + + G FHR+IKDFMIQGGD
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFHRIIKDFMIQGGDP 67
>2b71_A Cyclophilin-like protein; structural genomics, structural
genomics consortium, SGC, isomerase; 2.50A {Plasmodium
yoelii} SCOP: b.62.1.1
Length = 196
Score = 67.7 bits (166), Expect = 4e-16
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G EL+ PKT NF C F + FHRVI +F+IQGGD
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLCEMGF--------YDNTIFHRVIPNFVIQGGDP 94
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 66.2 bits (162), Expect = 1e-15
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
G + FELF PK +NF + +K FH+ IK F+IQGGD
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSASGY--------YKNTIFHKNIKGFIIQGGD 71
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 63.0 bits (154), Expect = 1e-14
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
G + E+F + PKT ENF C + + G FHR IK FM+Q GD
Sbjct: 10 GDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGD 55
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase,
RV0009, rotamase, structural proteomics in europe,
spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 62.8 bits (153), Expect = 3e-14
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFK-------GASFHRVIKDFMIQGG 65
G + LF + PKT NF G GA FHRVI+ FMIQGG
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 66 D 66
D
Sbjct: 93 D 93
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 62.3 bits (152), Expect = 4e-14
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
G + EL++ PK NF Q C + + FHRV+ F++QGGD
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLCLEAY--------YDNTIFHRVVPGFIVQGGD 79
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 61.6 bits (150), Expect = 7e-14
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGD 74
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 61.3 bits (149), Expect = 2e-13
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
+G + EL+A P NF Q C + + FHRV+KDF++QGGD
Sbjct: 30 LGDLDVELWARECPLACRNFVQLCLEGY--------YVNTIFHRVVKDFIVQGGD 76
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 59.8 bits (146), Expect = 2e-13
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G + EL PKT ENF + + G FHRVI FMIQGG F
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYVKKGH--------YDGTIFHRVINGFMIQGGGF 59
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor
complex; HET: NIT; 1.70A {Escherichia coli} SCOP:
b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 59.5 bits (145), Expect = 3e-13
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G + EL P + +NF + F + +FHRVI FMIQGG F
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGF 60
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 59.5 bits (145), Expect = 3e-13
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G ++ + F D P+T +NF +C F + FHRVI FMIQGG F
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGF 55
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 49.6 bits (118), Expect = 5e-09
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 7 TPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
P E L P T+ NF F + G R F++Q GD
Sbjct: 182 NPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHF--------YDGMEIQRSD-GFVVQTGD 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.42
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 57
M E +VV +R G + AVP G S + +I
Sbjct: 1775 DVMSIESLVEVV-----FYR----GMTMQVAVPRDELGRSNYGMI 1810
Score = 23.9 bits (51), Expect = 6.7
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 31/89 (34%)
Query: 5 TGTPTKEI----GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKG---------- 50
G K I MIFE D KT + F+ E + F+
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFK-----EINEHSTSYTFRSEKGLLSATQF 1731
Query: 51 ----------ASFHRVIKD-FMIQGGDFV 68
A+F +K +I
Sbjct: 1732 TQPALTLMEKAAF-EDLKSKGLIPADATF 1759
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 26.4 bits (57), Expect = 0.92
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 16 IFELFADVVPK-TSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
+ + ++ P TSE F + ++ + FKG ++DF++Q
Sbjct: 960 LANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGT-----LRDFLVQ 1003
>3gi1_A LBP, laminin-binding protein of group A streptococci;
zinc-binding receptor, metal-binding, helical backbone,
alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB:
3hjt_A
Length = 286
Score = 25.7 bits (57), Expect = 1.3
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 51 ASFHRVIKDFMIQ-GGDFVNVSMLP 74
SF+ + + GD +V M+
Sbjct: 17 TSFY-PMYAMTKEVSGDLNDVRMIQ 40
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation,
GTP-binding, HOST-virus interaction, nucleotide-binding,
phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB:
3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 25.6 bits (55), Expect = 1.6
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 16 IFELFADVVPK-TSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
+ L P + F TG F + FK ++DF++Q
Sbjct: 980 VANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEH-----LRDFLVQ 1023
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla
glycoprotein, secreted, storage protein, oxygen
transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea
pernyi}
Length = 674
Score = 25.3 bits (55), Expect = 1.9
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 60
+ P GT G F+ V P S +F D P+G+ F R +
Sbjct: 589 LMLPRGTK----GGFPFQFVVFVYPFESTTKNLTPYEKFMIDNKPLGY---PFDRPVDTS 641
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein,
metal binding protein; 2.40A {Streptococcus pneumoniae}
Length = 284
Score = 25.0 bits (55), Expect = 2.2
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 51 ASFHRVIKDFMIQ-GGDFVNVSMLP 74
SF+ I + + GD +V M+
Sbjct: 15 TSFY-PIYAMVKEVSGDLNDVRMIQ 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 24.4 bits (52), Expect = 4.5
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 49 KGASFHRVIKDFMIQGGDFV 68
+G SF +++ G V
Sbjct: 930 RGLSFKEIMEMSPEAEGTVV 949
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 24.4 bits (52), Expect = 4.7
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 49 KGASFHRVIKDFMIQGGDFV 68
+GA+F ++ K + G +
Sbjct: 943 RGATFTQICKMTDVYEGSLI 962
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 24.4 bits (52), Expect = 4.7
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 13/69 (18%)
Query: 8 PTKEIGRMIFELFADVV-PKTSENFRQF------CTGEFRRDAVPIGFKGASFHRVIKDF 60
P E+ MI+ +V E+F +P + + F
Sbjct: 45 PKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFS----NLVTHLDSF 100
Query: 61 M--IQGGDF 67
+ + DF
Sbjct: 101 LPICRVNDF 109
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix,
antiparallel-coiled-COI domain, ATP-binding, helicase,
hydrolase; 3.39A {Saccharomyces cerevisiae}
Length = 1108
Score = 24.4 bits (52), Expect = 5.0
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 49 KGASFHRVIKDFMIQGGDFV 68
+GA+F ++ K + G +
Sbjct: 1041 RGATFTQICKMTDVYEGSLI 1060
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 23.7 bits (51), Expect = 7.2
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 4 PTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR 40
GT T R I E+ + K + TG R
Sbjct: 33 AVGTGTSGPARSISEVLENAHMKKEDMAFTLATGYGR 69
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 23.6 bits (51), Expect = 7.5
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 26 KTSENFRQFCTGEFRRDAVPIG 47
+ E F+ F T D +P
Sbjct: 2469 EEHEKFKMFMTCHLTGDKLPAP 2490
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 23.4 bits (51), Expect = 10.0
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 8/30 (26%)
Query: 4 PTGTPTKEIG--------RMIFELFADVVP 25
TP + G R +++A+V
Sbjct: 80 LWHTPADQTGHGSLNVALRKQLDIYANVAL 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.144 0.440
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,174,888
Number of extensions: 58268
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 50
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)