RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11623
(74 letters)
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 60.6 bits (146), Expect = 6e-14
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 9 TKEIGRMIFELFADVVPKTSENFRQFCT---GEFRRDAVPIGFKGASFHRVIKDFMIQGG 65
GR++ EL+ D+ P+T NF CT G + P+ +KG++FHRVIK+FMIQGG
Sbjct: 14 GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGG 73
Query: 66 DFVN 69
DF
Sbjct: 74 DFTK 77
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 55.6 bits (133), Expect = 6e-12
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPIGFKGASFHRVIKDFMIQGGD 66
+ +GR++ ELFAD+VPKT+ENFR CTGE P+ FKG FHR+IK FMIQGGD
Sbjct: 26 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGD 85
Query: 67 FVN 69
F N
Sbjct: 86 FSN 88
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 55.3 bits (132), Expect = 7e-12
Identities = 48/58 (82%), Positives = 55/58 (94%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
+E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVIKDFMIQGGDF
Sbjct: 18 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDF 75
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 53.2 bits (127), Expect = 3e-11
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+G + F+LF DVVPKT+ NFR CTGE G+ G+ FHRVI DFM+QGGDF
Sbjct: 13 APLGTIKFKLFDDVVPKTAANFRALCTGEK-----GFGYAGSHFHRVIPDFMLQGGDFTA 67
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 53.3 bits (127), Expect = 3e-11
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
K IGR++ LF VPKT+ NF + + G+ G+ FHRVI DFMIQGGDF
Sbjct: 18 KPIGRIVIGLFGKTVPKTATNFIELA-----KKPKGEGYPGSKFHRVIADFMIQGGDFTR 72
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 53.3 bits (127), Expect = 4e-11
Identities = 37/58 (63%), Positives = 48/58 (82%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
+G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+K FHRVIK+FMIQGGDF
Sbjct: 28 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDF 85
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 52.4 bits (125), Expect = 7e-11
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDP 56
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans
isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 52.0 bits (124), Expect = 1e-10
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 4 PTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
P +G ++ EL+ PKT +NF + + + G FHR+IKDFMIQ
Sbjct: 12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFHRIIKDFMIQ 63
Query: 64 GGDFVN 69
GGD
Sbjct: 64 GGDPTG 69
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo
sapiens) [TaxId: 9606]}
Length = 164
Score = 51.4 bits (122), Expect = 1e-10
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
K +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI FM Q GDF N
Sbjct: 14 KPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVIPSFMCQAGDFTN 68
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 51.4 bits (122), Expect = 2e-10
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGE-------FRRDAVPIGFKGASF 53
++ T T G + LF + PKT NF G + GA F
Sbjct: 1 LATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVF 60
Query: 54 HRVIKDFMIQGGDF 67
HRVI+ FMIQGGD
Sbjct: 61 HRVIQGFMIQGGDP 74
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 49.1 bits (116), Expect = 1e-09
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
K++GR++ LF +VVPKT ENF TGE G+KG+ FHRVIKDFMIQGGDF
Sbjct: 19 KDVGRIVIGLFGNVVPKTVENFVALATGEK-----GYGYKGSIFHRVIKDFMIQGGDF 71
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 48.7 bits (115), Expect = 2e-09
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 4 PTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
P GT ++GR++F LF VPKT++NFR+ C ++ ++FHR+I +FMIQ
Sbjct: 12 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-----YRESTFHRIIPNFMIQ 66
Query: 64 GGDFVN 69
GGDF
Sbjct: 67 GGDFTR 72
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 48.7 bits (115), Expect = 2e-09
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKDFMIQGGDFV 68
GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+I FM QGGD
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 69 N 69
N
Sbjct: 75 N 75
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic)
{Caenorhabditis elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 48.3 bits (114), Expect = 2e-09
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
K GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR+I +FMIQGGDF
Sbjct: 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF 74
Query: 68 VN 69
Sbjct: 75 TR 76
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 46.8 bits (110), Expect = 8e-09
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+ +GR++ LF + VPKT ENF+Q +GE G+KG+ FHRVI++FMIQGGDF N
Sbjct: 17 EPVGRVVIGLFGNDVPKTVENFKQLASGEN-----GFGYKGSIFHRVIRNFMIQGGDFTN 71
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo
sapiens) [TaxId: 9606]}
Length = 161
Score = 46.0 bits (108), Expect = 2e-08
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFV 68
K GR+ L +DVVP T+ENFR CT E FKG+SFHR+I FM QGGDF
Sbjct: 12 NKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-----FKGSSFHRIIPQFMCQGGDFT 66
Query: 69 N 69
N
Sbjct: 67 N 67
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 42.5 bits (99), Expect = 3e-07
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 11 EIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
++G + E+F + PKT ENF C + + FHR IK FM+Q GD
Sbjct: 8 DVGDIKIEVFCERTPKTCENFLALCASNYYNGCI--------FHRNIKGFMVQTGDP 56
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 41.4 bits (96), Expect = 8e-07
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
G ++ + F D P+T +NF +C F + FHRVI FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQ 51
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 39.5 bits (91), Expect = 5e-06
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72
G + EL P + +NF + F + +FHRVI FMIQGG F
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQMQ 65
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 36.8 bits (84), Expect = 5e-05
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 12 IGRMIFELFADVVPKTSENFRQFC 35
+G + LF KT +NF
Sbjct: 10 MGDIHISLFYKECKKTVQNFSVHS 33
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and
WD repeat-containing protein 1, PPWD1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 36.5 bits (83), Expect = 5e-05
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71
+G + +LF PKT ENF + + G +FHR+IK FMIQ GD
Sbjct: 18 MGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGDPTGTG 69
Query: 72 M 72
M
Sbjct: 70 M 70
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 32.9 bits (74), Expect = 0.001
Identities = 12/56 (21%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 13 GRMIFELFADVVPKTSENFRQFCT-GEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G EL+ PKT NF C G + +GG
Sbjct: 26 GDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKS 81
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 23.7 bits (51), Expect = 2.8
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 7 TPTKEIGRMIFELFADVVPKTSENFRQFCT 36
T+E EL + R+
Sbjct: 119 QATRESLSYARELLNTSFIRNRPILRKTAV 148
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal
domain {Cyanobacteria (Arthrospira maxima) [TaxId:
129910]}
Length = 174
Score = 23.6 bits (51), Expect = 3.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 9 TKEIGRMIF--ELFADVVPKTSENFRQFCT 36
T + R IF L ADVVP T F+Q
Sbjct: 3 TIDTARSIFPETLAADVVPATIARFKQLSA 32
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 21.9 bits (46), Expect = 9.7
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 51 ASFHRVIKDFMIQGGDFVNVSML 73
R + G + +
Sbjct: 8 GGVTRHVPLIEPLPGRRIPLVEF 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.144 0.440
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,452
Number of extensions: 11052
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 25
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)