Query psy11625
Match_columns 314
No_of_seqs 188 out of 536
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 23:27:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h10_A ARYL hydrocarbon recept 99.7 3.8E-17 1.3E-21 126.3 4.8 58 210-271 6-63 (73)
2 1a0a_A BHLH, protein (phosphat 99.7 3.2E-17 1.1E-21 123.1 3.9 59 213-272 2-60 (63)
3 4h10_B Circadian locomoter out 99.6 1.1E-15 3.8E-20 117.8 3.3 55 212-273 7-61 (71)
4 1an4_A Protein (upstream stimu 99.4 6.4E-15 2.2E-19 110.0 -0.3 60 212-273 4-63 (65)
5 1am9_A Srebp-1A, protein (ster 99.4 1.7E-13 5.7E-18 107.3 5.2 56 211-273 4-59 (82)
6 4ati_A MITF, microphthalmia-as 99.3 3.8E-13 1.3E-17 111.9 3.9 59 211-273 25-83 (118)
7 1hlo_A Protein (transcription 99.2 8.9E-12 3.1E-16 96.6 5.2 57 211-273 10-66 (80)
8 1nkp_B MAX protein, MYC proto- 99.2 5.7E-12 1.9E-16 98.1 4.1 55 213-273 2-56 (83)
9 4f3l_A Mclock, circadian locom 99.1 2.4E-11 8.2E-16 114.4 3.7 55 211-272 10-64 (361)
10 4f3l_B BMAL1B; BHLH, PAS, circ 99.1 4.6E-11 1.6E-15 114.0 5.6 57 211-271 11-67 (387)
11 3u5v_A Protein MAX, transcript 99.1 2.4E-10 8.1E-15 88.8 6.7 58 211-273 3-61 (76)
12 1nkp_A C-MYC, MYC proto-oncoge 99.0 1E-10 3.5E-15 92.8 4.3 57 212-273 5-61 (88)
13 1nlw_A MAD protein, MAX dimeri 98.8 2.7E-09 9.2E-14 83.4 3.7 55 214-273 2-56 (80)
14 1mdy_A Protein (MYOD BHLH doma 98.6 2.8E-08 9.5E-13 75.7 3.8 57 210-272 9-65 (68)
15 2ql2_B Neurod1, neurogenic dif 98.6 4E-08 1.4E-12 73.0 4.1 55 213-272 2-56 (60)
16 2lfh_A DNA-binding protein inh 98.4 6.8E-08 2.3E-12 74.0 1.3 48 219-271 20-67 (68)
17 2db7_A Hairy/enhancer-OF-split 98.2 3.8E-07 1.3E-11 68.9 2.1 30 283-312 14-44 (64)
18 4ath_A MITF, microphthalmia-as 98.0 2.1E-06 7E-11 68.0 2.8 45 225-273 4-48 (83)
19 4aya_A DNA-binding protein inh 97.7 2.5E-05 8.7E-10 63.4 4.0 62 222-293 34-95 (97)
20 2db7_A Hairy/enhancer-OF-split 96.5 0.00081 2.8E-08 50.6 1.8 21 3-23 41-63 (64)
21 3axj_B TRAX, translin associat 39.7 88 0.003 29.2 7.9 73 224-300 47-125 (298)
22 2k42_B Espfu; WAsp, GBD, autoi 32.8 20 0.00069 24.1 1.7 15 5-19 5-19 (36)
23 2pmr_A Uncharacterized protein 23.5 1.1E+02 0.0038 23.9 4.7 69 225-302 6-77 (87)
24 2kxc_B ESPF-like protein; IRTK 20.2 1.1E+02 0.0036 21.8 3.5 15 6-20 4-18 (48)
No 1
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.66 E-value=3.8e-17 Score=126.25 Aligned_cols=58 Identities=31% Similarity=0.490 Sum_probs=51.7
Q ss_pred HHHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy11625 210 IWIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQR 271 (314)
Q Consensus 210 ~~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~ 271 (314)
...||.+|.++|||||+|||++|++|+.|||.+.. ...|+|||+||++||+|||.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~----~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHT----CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHcccccc----ccccccHHHHHHHHHHHHHHHhc
Confidence 35688899999999999999999999999998753 25799999999999999999853
No 2
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.66 E-value=3.2e-17 Score=123.14 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=53.2
Q ss_pred hhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHh
Q psy11625 213 FQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272 (314)
Q Consensus 213 RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~q 272 (314)
||.+|.++||+||+|||.+|++|+.|||.+...+. ...|++||+|||+||+||+.||++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~-~~~k~sKa~iL~~Ai~YIk~Lq~~ 60 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccc-cCCcccHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999876542 257999999999999999999875
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=117.78 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=50.0
Q ss_pred HhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 212 IFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 212 ~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
.+|.+|.++|||||++||++|.+|+.|||. ...|+||++||++||+||+.|+++.
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-------~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-------CCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCC-------CCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 477889999999999999999999999984 2479999999999999999998864
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=6.4e-15 Score=109.97 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=51.2
Q ss_pred HhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 212 IFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 212 ~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
.||..|.++||+||++||++|.+|+.|||.+.... ...|++||+||++||+||+.|+++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~--~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMES--TKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCS--STTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCccccc--ccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999753221 1358999999999999999998763
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.40 E-value=1.7e-13 Score=107.27 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=51.0
Q ss_pred HHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 211 WIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 211 ~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
..||..|.++||+||++||++|.+|+.|||.+ ..|++||+||++||+||+.|+.+.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-------~~k~~Ka~IL~~Ai~YI~~Lq~~~ 59 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSN 59 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999962 479999999999999999998764
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.34 E-value=3.8e-13 Score=111.92 Aligned_cols=59 Identities=31% Similarity=0.468 Sum_probs=46.3
Q ss_pred HHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 211 WIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 211 ~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
..+|.+|.++|||||++||++|.+|+.|||.+.+. ..|++||+||++||+||+.|+++.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~ 83 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQ 83 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999976432 368999999999999999998763
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.22 E-value=8.9e-12 Score=96.58 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=51.2
Q ss_pred HHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 211 WIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 211 ~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
..+|..|.++||+||+.||.+|++|+.|||.+. ..|++|++||.+||+||+.|+++.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 66 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999742 368999999999999999998753
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.22 E-value=5.7e-12 Score=98.06 Aligned_cols=55 Identities=20% Similarity=0.397 Sum_probs=49.7
Q ss_pred hhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 213 FQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 213 RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
||..|..+||+||++||++|++|+.+||.+. ..|++|++||.+||+||+.|+.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 56 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999742 368999999999999999998653
No 9
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.11 E-value=2.4e-11 Score=114.40 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=42.2
Q ss_pred HHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHh
Q psy11625 211 WIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272 (314)
Q Consensus 211 ~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~q 272 (314)
..+|.+|.++|||||+|||..|.+|+.|||. ..+|||||+||++||.|||.++..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-------~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCS-------SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-------CCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4567789999999999999999999999992 257999999999999999998754
No 10
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.11 E-value=4.6e-11 Score=113.96 Aligned_cols=57 Identities=30% Similarity=0.475 Sum_probs=50.6
Q ss_pred HHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy11625 211 WIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQR 271 (314)
Q Consensus 211 ~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~ 271 (314)
..+|.+|.++|||||+|||..|.+|+.|||.+.. ...||||++||++||.|||.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~----~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----CSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCc----cccccCHHHHHHHHHHHHHHhhc
Confidence 4567889999999999999999999999998632 25899999999999999999873
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.06 E-value=2.4e-10 Score=88.79 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=45.7
Q ss_pred HHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchh-hHHHHHHHHHHHHHHHHHhh
Q psy11625 211 WIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKL-EKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 211 ~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKl-EKAdILE~TV~yLk~Lq~qq 273 (314)
..||..|..+||+||+.||+++++|+.+||.+... .|. .|++||..||+||+.|+++-
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~-----~K~~sK~~IL~~AieYI~~Lq~~l 61 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKS-----DKAQTKLLILQQAVQVILGLEQQV 61 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCc-----cccccHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999975432 344 79999999999999998763
No 12
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.05 E-value=1e-10 Score=92.77 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=50.7
Q ss_pred HhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 212 IFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 212 ~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
.++..|.++||+||+.||++|..|+.+||... ...|++|++||..|++||+.|+.+.
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-----~~~K~sK~~iL~~A~~YI~~L~~~~ 61 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELE-----NNEKAPKVVILKKATAYILSVQAEE 61 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGT-----TCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999742 1469999999999999999998764
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.79 E-value=2.7e-09 Score=83.36 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=47.7
Q ss_pred hhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 214 QSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 214 K~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
+..|..+||+||+.||.||+.|+.+||... ...|+.|++||..|++||+.|+.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~-----~~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGP-----DSSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCS-----SSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999531 2578999999999999999998753
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.59 E-value=2.8e-08 Score=75.69 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=49.6
Q ss_pred HHHhhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHh
Q psy11625 210 IWIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272 (314)
Q Consensus 210 ~~~RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~q 272 (314)
...|+..+...||+|+..||+.|+.|+.+||.. + ..|+.|++||.++++||+.|+..
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~----~--~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSN----P--NQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC----T--TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC----C--CCCCCHHHHHHHHHHHHHHHHHH
Confidence 346777899999999999999999999999952 1 46999999999999999999763
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.57 E-value=4e-08 Score=73.02 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=47.5
Q ss_pred hhhccchHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHh
Q psy11625 213 FQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272 (314)
Q Consensus 213 RK~~k~liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~q 272 (314)
|+..+..-||+|+..||++++.|+.+||.. ....|+.|.+||.++++||+.|+..
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~-----~~~~klSKi~tLr~Ai~YI~~L~~~ 56 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCY-----SKTQKLSKIETLRLAKNYIWALSEI 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSC-----CSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCC-----CCcCcCCHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999953 1257999999999999999999764
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.38 E-value=6.8e-08 Score=73.97 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy11625 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQR 271 (314)
Q Consensus 219 liEKRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~ 271 (314)
.-||+|+..||++|+.||.+||.. ....||.|.|||.++++||+.||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~-----p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGV-----PRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCC-----CTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCccHHHHHHHHHHHHHHHHc
Confidence 458889999999999999999963 125799999999999999999974
No 17
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=98.22 E-value=3.8e-07 Score=68.91 Aligned_cols=30 Identities=37% Similarity=0.883 Sum_probs=26.9
Q ss_pred hHHhhHHH-HHHHHHHHHhhccccCCCCCCC
Q psy11625 283 TVLQKFKS-GFGDCAVEINRYISRLDGLDTE 312 (314)
Q Consensus 283 ~~~~~f~~-Gf~~C~~EV~rFLs~~eg~d~~ 312 (314)
....+|++ ||++|+.||.|||+.+||+|++
T Consensus 14 ~~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~ 44 (64)
T 2db7_A 14 ALAMDYRSLGFRECLAEVARYLSIIEGLDAS 44 (64)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCCcc
Confidence 34579995 9999999999999999999976
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.03 E-value=2.1e-06 Score=68.04 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=39.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh
Q psy11625 225 RARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273 (314)
Q Consensus 225 ReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq 273 (314)
|..||+.+.+|..|||.+.. ...|+.|+.||..||+||+.||+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~----~~~k~nKg~IL~ksvdYI~~Lq~e~ 48 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSND----PDMRWNKGTILKASVDYIRKLQREQ 48 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCC----TTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhHHHhhhhhhccCCCCCC----cccCcchHHHHHHHHHHHHHHHHHH
Confidence 78999999999999997532 2579999999999999999998654
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.69 E-value=2.5e-05 Score=63.39 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=41.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhhhhhcccCChhHHhhHHHHHH
Q psy11625 222 KRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQLSVAVASDPTVLQKFKSGFG 293 (314)
Q Consensus 222 KRRReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq~~~~~~~~~~~~~~f~~Gf~ 293 (314)
+.|=..||++|+.||.+||... ...||-|.|||.++++||+.|+.--. ..+.....|.+||.
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p-----~~kKLSKIETLRlAi~YI~~Lq~~L~-----~~~~~~~~~~~g~~ 95 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIP-----QNKKVSKMEILQHVIDYILDLQIALD-----SHLKPSFLVQSGDI 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC-----SSSCCCHHHHHHHHHHHHHHHHHHHH-----TTTSTTCC------
T ss_pred HHHHHHHHHHHHHHHHHCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHh-----cCCCCcchhhcCcc
Confidence 4455779999999999999631 25799999999999999999976421 11222235778875
No 20
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=96.55 E-value=0.00081 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.9
Q ss_pred cchH--HHHHHHHHHHhhhcccc
Q psy11625 3 WNKG--VKSRLLNHLNSCVSGLQ 23 (314)
Q Consensus 3 ~n~~--VR~RLL~HLasC~~~i~ 23 (314)
||+. +|+|||+||++|+++++
T Consensus 41 ~d~~d~~r~rLl~HL~~~~~~~e 63 (64)
T 2db7_A 41 LDASDPLRVRLVSHLNNYASQRE 63 (64)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHHhhccC
Confidence 5665 99999999999999874
No 21
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=39.72 E-value=88 Score=29.15 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHHHhHHHHHHH---HHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhh---hhhcccCChhHHhhHHHHHHHHHH
Q psy11625 224 RRARINNCLNELKSL---ILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ---LSVAVASDPTVLQKFKSGFGDCAV 297 (314)
Q Consensus 224 RReRIN~sL~eLk~L---lp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq---~~~~~~~~~~~~~~f~~Gf~~C~~ 297 (314)
|||||-+.-..+-.+ +...++.- ...+-++.+||+.+-..|+.+..+. +...+. ....-+|..+|+.|++
T Consensus 47 ~RErIikisRdIt~~Sk~~If~Lhr~--~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~--~~~~y~y~~~~s~~lQ 122 (298)
T 3axj_B 47 RHERIVKLSRDITIESKRIIFLLHSI--DSRKQNKEKVLEEARQRLNKLIAVNFRAVALELR--DQDVYQFRSSYSPGLQ 122 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--CSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHTT--TSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccCHHHHHhccCHHHH
Confidence 678876665554333 22223321 1124568899999999998886632 322222 1123468888888888
Q ss_pred HHh
Q psy11625 298 EIN 300 (314)
Q Consensus 298 EV~ 300 (314)
|..
T Consensus 123 E~V 125 (298)
T 3axj_B 123 EFI 125 (298)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 22
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=32.78 E-value=20 Score=24.11 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHhhh
Q psy11625 5 KGVKSRLLNHLNSCV 19 (314)
Q Consensus 5 ~~VR~RLL~HLasC~ 19 (314)
+-|.|||..|||.--
T Consensus 5 PpIAQaLk~HLAaye 19 (36)
T 2k42_B 5 PDVAQRLMQHLAEHG 19 (36)
T ss_dssp SSHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHh
Confidence 458999999999753
No 23
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=23.48 E-value=1.1e+02 Score=23.85 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHhhhhhcccCCh---hHHhhHHHHHHHHHHHHhh
Q psy11625 225 RARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQLSVAVASDP---TVLQKFKSGFGDCAVEINR 301 (314)
Q Consensus 225 ReRIN~sL~eLk~Llp~~~~~~~~~~sKlEKAdILE~TV~yLk~Lq~qq~~~~~~~~~---~~~~~f~~Gf~~C~~EV~r 301 (314)
+|||.+.+.-|+.-|-..... + .. -.-.+|++|+-.|+++-.---. ..|. -..-.|-.|+-++ ..+..
T Consensus 6 ~Eki~kYi~~leeaL~~i~~~-~--l~-~~a~~~l~mA~~Y~~Da~~fl~----kGD~v~Ala~isYa~GwLDA-lR~~~ 76 (87)
T 2pmr_A 6 RERIEKDLELLEKNLMEMKSI-K--LS-DDEEAVVERALNYRDDSVYYLE----KGDHITSFGCITYAHGLLDS-LRMLH 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-C--CC-HHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHHHHcccc-c--ch-HHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH-HHHhc
Confidence 678888888888777653210 0 00 1335899999999997421110 0111 1123677788888 33333
Q ss_pred c
Q psy11625 302 Y 302 (314)
Q Consensus 302 F 302 (314)
|
T Consensus 77 ~ 77 (87)
T 2pmr_A 77 R 77 (87)
T ss_dssp T
T ss_pred c
Confidence 3
No 24
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=20.23 E-value=1.1e+02 Score=21.83 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhc
Q psy11625 6 GVKSRLLNHLNSCVS 20 (314)
Q Consensus 6 ~VR~RLL~HLasC~~ 20 (314)
-|.|+|..|||.---
T Consensus 4 piaQaLk~HLAAye~ 18 (48)
T 2kxc_B 4 DVAQRLMQHLAEHGI 18 (48)
T ss_pred cHHHHHHHHHHHHhh
Confidence 589999999998754
Done!