RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11625
(314 letters)
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 61.3 bits (149), Expect = 3e-13
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 215 SNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
+ +E+RRR +INN + +L +I ++ + S K IL ++Q +++
Sbjct: 7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMEST--KSGQSKGGILSKASDYIQELRQS 62
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 57.2 bits (138), Expect = 1e-11
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 215 SNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
+ E+ RR R+ L+EL SLI ++ + KA +E ++++++Q+
Sbjct: 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQ-NVSAAPSKATTVEAACRYIRHLQQN 60
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 53.3 bits (128), Expect = 4e-10
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
+E++RR I + + L+ + + K +A IL+ +++Q ++R+
Sbjct: 8 ALERKRRDHIKDSFHSLRDSV------PSLQGEKASRAQILDKATEYIQYMRRK 55
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 51.5 bits (123), Expect = 2e-09
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 215 SNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
+ +EKR R+ IN+ + ELK L +KL K+ +L + +++ +Q
Sbjct: 8 TAHNAIEKRYRSSINDKIIELKDL-------VVGTEAKLNKSAVLRKAIDYIRFLQHS 58
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 46.4 bits (110), Expect = 1e-07
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
MEK RRA + L +LK L+ S+ +L H++ ++
Sbjct: 7 EMEKNRRAHLRLSLEKLKGLVPL-----GPDSSRHTTLSLLTKAKLHIKKLEDS 55
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 45.7 bits (108), Expect = 3e-07
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
++E++RR + L+ I + + K K IL+ ++ +VQ +
Sbjct: 12 VLERQRRNELKRSFFALRDQIP-----ELENNEKAPKVVILKKATAYILSVQAE 60
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 44.9 bits (106), Expect = 3e-07
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
+ E+RR +++N LK + +L K +IL +++++ +Q
Sbjct: 18 MRERRRLSKVNEAFETLKRST------SSNPNQRLPKVEILRNAIRYIEGLQAL 65
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 55
Score = 40.2 bits (94), Expect = 1e-05
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 281 DPTVL-QKFKS-GFGDCAVEINRYISRLDGLDTE 312
D L ++S GF +C E+ RY+S ++GLD
Sbjct: 4 DAHALAMDYRSLGFRECLAEVARYLSIIEGLDAS 37
Score = 32.1 bits (73), Expect = 0.008
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 6 GVKSRLLNHLNSCVS 20
++ RL++HLN+ S
Sbjct: 39 PLRVRLVSHLNNYAS 53
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 37.8 bits (88), Expect = 7e-05
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 225 RARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQ 272
R+ IN+ + ELK L+ +K+ K+ +L + +++ +Q+
Sbjct: 1 RSSINDKIIELKDLV-------MGTDAKMHKSGVLRKAIDYIKYLQQV 41
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 301
Score = 29.0 bits (64), Expect = 0.66
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 23/118 (19%)
Query: 163 TKAFSSKPSYFSPYTNESSLLMKVPPYHQAEPCSSSILIITALNTVLIWIFQSNKP---- 218
++ S Y + + + P ++ + A VL IF
Sbjct: 187 SRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTES-DVWAYGVVLWEIFSYGLQPYYG 245
Query: 219 ---------IMEKRRRARINNCLNELKSLILEAMRKDPAR-------HSKLEKADILE 260
+ + A NC EL +L+ K PA H L++ + E
Sbjct: 246 MAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQR--MCE 301
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 29.0 bits (64), Expect = 0.79
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQ 273
I R NC L SL+ + DP+ + E+ L + ++
Sbjct: 222 IENGERLPMPPNCPPTLYSLMTKCWAYDPS-----RRPRFTEL-KAQLSTILEEE 270
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 28.6 bits (63), Expect = 0.90
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 217 KPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNVQRQQLSV 276
+ + + R + NC +E+ L+ + R+ P + + L + ++ +
Sbjct: 237 EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI------LVSLNRMLEERKTY 290
Query: 277 AVASDPTVLQKFKSGFGDCAVE 298
+ T+ +KF DC+ E
Sbjct: 291 ---VNTTLYEKFTYAGIDCSAE 309
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 28.2 bits (62), Expect = 1.3
Identities = 12/124 (9%), Positives = 37/124 (29%), Gaps = 7/124 (5%)
Query: 164 KAFSSKPSYFSPYTNESSLLMKVPPYHQAEPCSSSILIITALNTVLIWIFQSNKPIMEKR 223
++ + K + + TN L K + +K + +
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEK-- 268
Query: 224 RRARINNCLNELKSLILEAMRKDPARHSKLEKADILEM-TVKHLQNVQRQQLSVAVASDP 282
++ +L+ E + + +L ++ + + HL++ + + D
Sbjct: 269 ----LSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDE 324
Query: 283 TVLQ 286
+
Sbjct: 325 QLCW 328
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
MoaA {Staphylococcus aureus [TaxId: 1280]}
Length = 327
Score = 27.8 bits (60), Expect = 1.6
Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 170 PSYFSPYTNESSLLMKVPPYHQAEPCSSSILIITALNTVLIWIFQSNKPIMEKRRRARIN 229
+ + + + + Q+ + + +++ +F + + R
Sbjct: 235 VAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLF-ATVDGFNVKAFIRSG 293
Query: 230 NCLNELKSLILEAMRKDPARHSKLEKAD 257
ELK + R+S A
Sbjct: 294 VTDEELKEQFKALWQIRDDRYSDERTAQ 321
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 27.8 bits (61), Expect = 1.6
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 18/137 (13%)
Query: 138 LSPHNAEVTSTSTTQDNVFKVPSLQTKAFSSKPSYFSPYTNESSLLMKVPPYHQAEPCSS 197
L+ N + + + + F L + Y + + L P SS
Sbjct: 135 LAARNVLLVNRHYAKISDF---GLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSS 191
Query: 198 SILIITALNTVLIWIFQSNKP-------------IMEKRRRARINNCLNELKSLILEAMR 244
+ + + + I + +R C EL +L+ +
Sbjct: 192 RSDV-WSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWI 250
Query: 245 KDPA-RHSKLEKADILE 260
R L +
Sbjct: 251 YKWEDRPDFLTVEQRMR 267
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 2.1
Identities = 5/51 (9%), Positives = 18/51 (35%)
Query: 209 LIWIFQSNKPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADIL 259
+ + I R ++ + + + +A +++AD++
Sbjct: 146 FVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEPIKRADVV 196
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 27.4 bits (60), Expect = 2.3
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPAR 249
+++ RR + C + L ++L+
Sbjct: 247 LLQGRRLLQPEYCPDPLYEVMLKCWHPKAEM 277
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 299
Score = 27.4 bits (60), Expect = 2.5
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQN 268
I + R +C + L L+L+ +KD K I+ K ++N
Sbjct: 246 IEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKF--GQIVNTLDKMIRN 293
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 26.7 bits (58), Expect = 3.8
Identities = 9/135 (6%), Positives = 34/135 (25%), Gaps = 17/135 (12%)
Query: 151 TQDNVFKVPSLQT-KAFSSKPSYFSPYTNESSLLMKVPPYHQAEPCSSSILIITALNTVL 209
K+ K ++ + + + + + + +
Sbjct: 145 KTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQS-DVWSYGVTV 203
Query: 210 IWIFQSNKP-------------IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKA 256
+ + + R + C ++ ++++ D K
Sbjct: 204 WELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR-- 261
Query: 257 DILEMTVKHLQNVQR 271
+++ K ++ QR
Sbjct: 262 ELIIEFSKMARDPQR 276
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 207
Score = 26.3 bits (57), Expect = 4.6
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 20 SGLQQLTPFSLPSSTTAPPPPVTLPPAPS----LLEDVNN 55
SG+ ++T + LP++ P P L+ D+
Sbjct: 2 SGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQR 41
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping
enzyme), N-terminal domain {Chlorella virus PBCV-1
[TaxId: 10506]}
Length = 228
Score = 26.3 bits (57), Expect = 4.6
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 116 EHKKPKSPPPSPTSSTDGDVVYLSPHNAEVTSTS--------TTQDNVFKVPSLQTKAFS 167
+HK P+ P P+P S D L + V+ + T+ FKV ++ +A
Sbjct: 40 DHKFPRLPGPNPVSIERKDFEKLKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAM- 98
Query: 168 SKPSYFSPYTNESSLLMKVPPYHQAEPCSSSILIITALNTVLIWIFQ---SNKPIMEKRR 224
Y P+ N +L + + + + + S + R
Sbjct: 99 --TVYLLPFKNIPRVLFQGSIFDGELCVDIVEKKFAFVLFDAVVVSGVTVSQMDLAS--R 154
Query: 225 RARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVK 264
+ L E K++ + LE I++ +K
Sbjct: 155 FFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTIIKDHLK 194
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 26.2 bits (57), Expect = 4.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPAR 249
+ R R +NC EL L+ ++ P
Sbjct: 223 LERGYRMVRPDNCPEELYQLMRLCWKERPED 253
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 26.2 bits (57), Expect = 4.8
Identities = 4/51 (7%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNV 269
I + R R + ++ +++ + + + ++ +V
Sbjct: 214 IAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKIL------LSNILDV 258
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 26.2 bits (57), Expect = 5.3
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 26 TPFSLPSSTTAPPPPVTLPPAP 47
PF P TA P +L PAP
Sbjct: 317 EPF--PEIATASGPLPSLAPAP 336
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 6.2
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPAR 249
+ + R C E+ L+ D
Sbjct: 223 LEKGERMGCPAGCPREMYDLMNLCWTYDVEN 253
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 283
Score = 26.0 bits (56), Expect = 6.6
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 217 KPIMEKRRRARINNCLNELKSLILEAMRKDPA-RHSKLEKADILEMTVKH 265
K I + R +C + + L+++ +++ A R + IL+ ++
Sbjct: 224 KAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 273
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 26.0 bits (56), Expect = 6.6
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 217 KPIMEKRRRARINNCLNELKSLILEAMRKDPARHSKLEKADILEMTVKHLQNV 269
+ + E R + E+ +L+ +P++ + V+HL N+
Sbjct: 248 RRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL------VEHLGNL 294
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 25.9 bits (56), Expect = 7.0
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 219 IMEKRRRARINNCLNELKSLILEAMRKDPA-RHSKLEKADILE 260
E R R +C ++ +++++ P R + + D L
Sbjct: 228 DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLL 270
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 25.8 bits (56), Expect = 7.9
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 26 TPFSLPSSTTAPPPPVTLPPAP 47
TPF PS T P P ++ P
Sbjct: 320 TPF--PSLVTLPGPATSVARIP 339
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 25.1 bits (55), Expect = 9.1
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 22 LQQLTPFSLPSSTTAPPPPVTLPPAPSLLEDVNNNEAS 59
+ QL P L + P +TLPP P ++ S
Sbjct: 3 MNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPS 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.127 0.359
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,056,401
Number of extensions: 44695
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 32
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)