BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11626
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 201/322 (62%), Gaps = 11/322 (3%)
Query: 280 LHFLDDPKYRK-SFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 338
+ L+ K R+ FI + +K YGF+GLDLA++FP + LG W IKK T
Sbjct: 98 IDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFT 157
Query: 339 GP--KDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMI 396
G D + LH+E FT L+R++K + RA+ FLLS +VLP+VN T YFD+P++ +D +
Sbjct: 158 GDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFV 217
Query: 397 TLHAYDFRTPQRNPKEADYSAPLHFVYG---RVPHQNANAMVRWFIEHGVELQKLVLGIP 453
L +DF TP RNP+EADYSAP++ G R+ H NA+ V +++ G K+ LG+
Sbjct: 218 NLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVA 277
Query: 454 TFGRSWLLEESSHKSGIPPLV-ADGAGEKGTITKEEGLLSYAEICPQLVSITNA--QASP 510
T+G +W L + S G+P + G +G +++ GLLSYAEIC +L + N + +
Sbjct: 278 TYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNE 337
Query: 511 SLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIID 570
S LR+ DP +R G A+R D ++ + G WVS+++P++A KA+YA++ LGGVA+ D
Sbjct: 338 SPLRRVSDPTKRFGGIAYRPVDGQITE--GIWVSYDDPDSASNKAAYARVKNLGGVALFD 395
Query: 571 LSLDDFRGMCNSNKFPILRAAR 592
LS DDFRG C+ +K+PILRA +
Sbjct: 396 LSYDDFRGQCSGDKYPILRAIK 417
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 149/264 (56%), Gaps = 32/264 (12%)
Query: 31 FISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQI 90
+ G K+ +L+ AL C+HLVYG+AG+ + S+++ LD K++ F ++
Sbjct: 13 YTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGE-NLQAYSMNENLDIYKHQ----FSEV 67
Query: 91 TALKTFQPNLNIMLSVGGFED--DDDKEKYLEVLDDPKYRK-SFIETTVAALKKYGFNGL 147
T+LK P+L ++LSVGG D D KY+++L+ K R+ FI + +K YGF+GL
Sbjct: 68 TSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGL 127
Query: 148 DLAWEFPVVTEKHESYTLGSIWHKIKKTVTGP--KDDNPTLHREHFTLLIREMKAAFRAE 205
DLA++FP + LG W IKK TG D + LH+E FT L+R++K + RA+
Sbjct: 128 DLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRAD 187
Query: 206 NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFR 265
FLLS +VLP+VN T YFD+P++ +D + L +DFL
Sbjct: 188 GFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFL---------------------- 225
Query: 266 TPQRNPKEADYSAPLHFLDDPKYR 289
TP RNP+EADYSAP++ D K R
Sbjct: 226 TPARNPEEADYSAPIYHPDGSKDR 249
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 157/320 (49%), Gaps = 63/320 (19%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++F+ + + L+KY F+GLDL WE+P GS +P +
Sbjct: 95 RQTFVNSAIRFLRKYSFDGLDLDWEYP-----------GS-------------QGSPAVD 130
Query: 349 REHFTLLIREMKAAFRAE-------NFLLSASVLPHVNYT-VYFDVPSITQHLDMITLHA 400
+E FT L++++ AF+ E LLSA+V Y ++V I Q+LD + L A
Sbjct: 131 KERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMA 190
Query: 401 YDFRTPQRNPKEADYSAPLHFVY---GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGR 457
YDF K +++PL+ G N +A V+ ++E G KL+LG+PT+GR
Sbjct: 191 YDFHGSWE--KVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMPTYGR 248
Query: 458 SWLLEESSH-KSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQ 516
S+ L SS + G P A G+G G TKE G+L+Y E+C + A+ ++ Q
Sbjct: 249 SFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVC------SWKGATKQRIQDQ 299
Query: 517 EDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+ P Y FR D + WV F++ E+ K SY K GLGG + L LDDF
Sbjct: 300 KVP------YIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Query: 577 RGM-CNSNKFPILRAARTQF 595
G CN ++P+++ R +
Sbjct: 345 AGFSCNQGRYPLIQTLRQEL 364
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 46/216 (21%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G A+ P++L P S+CTHL+Y FAG+++ +L T + + L+++ LK
Sbjct: 16 GEARFLPKDLDP--SLCTHLIYAFAGMTN----------HQLSTTEWNDETLYQEFNGLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +L++GG+ + +K+ +++ R++F+ + + L+KY F+GLDL WE+P
Sbjct: 64 KMNPKLKTLLAIGGW--NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA-------ENF 207
GS +P + +E FT L++++ AF+ E
Sbjct: 122 -----------GS-------------QGSPAVDKERFTTLVQDLANAFQQEAQTSGKERL 157
Query: 208 LLSASVLPHVNYT-VYFDVPSITQHLDMITLHAYDF 242
LLSA+V Y ++V I Q+LD + L AYDF
Sbjct: 158 LLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDF 193
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 157/320 (49%), Gaps = 63/320 (19%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++F+ + + L+KY F+GLDL WE+P GS +P +
Sbjct: 95 RQTFVNSAIRFLRKYSFDGLDLDWEYP-----------GS-------------QGSPAVD 130
Query: 349 REHFTLLIREMKAAFRAE-------NFLLSASVLPHVNYT-VYFDVPSITQHLDMITLHA 400
+E FT L++++ AF+ E LLSA+V Y ++V I Q+LD + L A
Sbjct: 131 KERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMA 190
Query: 401 YDFRTPQRNPKEADYSAPLHFVY---GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGR 457
YDF K +++PL+ G N +A V+ +++ G KL+LG+PT+GR
Sbjct: 191 YDFHGSWE--KVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGR 248
Query: 458 SWLLEESSH-KSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQ 516
S+ L SS + G P A G+G G TKE G+L+Y E+C + A+ ++ Q
Sbjct: 249 SFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVC------SWKGATKQRIQDQ 299
Query: 517 EDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+ P Y FR D + WV F++ E+ K SY K GLGG + L LDDF
Sbjct: 300 KVP------YIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Query: 577 RGM-CNSNKFPILRAARTQF 595
G CN ++P+++ R +
Sbjct: 345 AGFSCNQGRYPLIQTLRQEL 364
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 46/216 (21%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G A+ P++L P S+CTHL+Y FAG+++ +L T + + L+++ LK
Sbjct: 16 GEARFLPKDLDP--SLCTHLIYAFAGMTN----------HQLSTTEWNDETLYQEFNGLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +L++GG+ + +K+ +++ R++F+ + + L+KY F+GLDL WE+P
Sbjct: 64 KMNPKLKTLLAIGGW--NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA-------ENF 207
GS +P + +E FT L++++ AF+ E
Sbjct: 122 -----------GS-------------QGSPAVDKERFTTLVQDLANAFQQEAQTSGKERL 157
Query: 208 LLSASVLPHVNYT-VYFDVPSITQHLDMITLHAYDF 242
LLSA+V Y ++V I Q+LD + L AYDF
Sbjct: 158 LLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDF 193
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 157/320 (49%), Gaps = 63/320 (19%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++F+ + + L+KY F+GLDL WE+P GS +P +
Sbjct: 95 RQTFVNSAIRFLRKYSFDGLDLDWEYP-----------GS-------------QGSPAVD 130
Query: 349 REHFTLLIREMKAAFRAE-------NFLLSASVLPHVNYT-VYFDVPSITQHLDMITLHA 400
+E FT L++++ AF+ E LLSA+V Y ++V I Q+LD + L A
Sbjct: 131 KERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMA 190
Query: 401 YDFRTPQRNPKEADYSAPLHFVY---GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGR 457
YDF K +++PL+ G N +A V+ +++ G KL+LG+PT+GR
Sbjct: 191 YDFHGSWE--KVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGR 248
Query: 458 SWLLEESSH-KSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQ 516
S+ L SS + G P A G+G G TKE G+L+Y E+C + A+ ++ Q
Sbjct: 249 SFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVC------SWKGATKQRIQDQ 299
Query: 517 EDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+ P Y FR D + WV F++ E+ K SY K GLGG + L LDDF
Sbjct: 300 KVP------YIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Query: 577 RGM-CNSNKFPILRAARTQF 595
G CN ++P+++ R +
Sbjct: 345 AGFSCNQGRYPLIQTLRQEL 364
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 46/216 (21%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G A+ P++L P S+CTHL+Y FAG+++ +L T + + L+++ LK
Sbjct: 16 GEARFLPKDLDP--SLCTHLIYAFAGMTN----------HQLSTTEWNDETLYQEFNGLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +L++GG+ + +K+ +++ R++F+ + + L+KY F+GLDL WE+P
Sbjct: 64 KMNPKLKTLLAIGGW--NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA-------ENF 207
GS +P + +E FT L++++ AF+ E
Sbjct: 122 -----------GS-------------QGSPAVDKERFTTLVQDLANAFQQEAQTSGKERL 157
Query: 208 LLSASVLPHVNYT-VYFDVPSITQHLDMITLHAYDF 242
LLSA+V Y ++V I Q+LD + L AYDF
Sbjct: 158 LLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDF 193
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 157/320 (49%), Gaps = 63/320 (19%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++F+ + + L+KY F+GLDL WE+P GS +P +
Sbjct: 95 RQTFVNSAIRFLRKYSFDGLDLDWEYP-----------GS-------------QGSPAVD 130
Query: 349 REHFTLLIREMKAAFRAE-------NFLLSASVLPHVNYT-VYFDVPSITQHLDMITLHA 400
+E FT L++++ AF+ E LLSA+V Y ++V I Q+LD + L A
Sbjct: 131 KERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMA 190
Query: 401 YDFRTPQRNPKEADYSAPLHFVY---GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGR 457
YDF K +++PL+ G N +A V+ +++ G KL+LG+PT+GR
Sbjct: 191 YDFHGSWE--KVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGR 248
Query: 458 SWLLEESSH-KSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQ 516
S+ L SS + G P A G+G G TKE G+L+Y E+C + A+ ++ Q
Sbjct: 249 SFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVC------SWKGATKQRIQDQ 299
Query: 517 EDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+ P Y FR D + WV F++ E+ K SY K GLGG + L LDDF
Sbjct: 300 KVP------YIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Query: 577 RGM-CNSNKFPILRAARTQF 595
G CN ++P+++ R +
Sbjct: 345 AGFSCNQGRYPLIQTLRQEL 364
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 46/216 (21%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G A+ P++L P S+CTHL+Y FAG+++ +L T + + L+++ LK
Sbjct: 16 GEARFLPKDLDP--SLCTHLIYAFAGMTN----------HQLSTTEWNDETLYQEFNGLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +L++GG+ + +K+ +++ R++F+ + + L+KY F+GLDL WE+P
Sbjct: 64 KMNPKLKTLLAIGGW--NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA-------ENF 207
GS +P + +E FT L++++ AF+ E
Sbjct: 122 -----------GS-------------QGSPAVDKERFTTLVQDLANAFQQEAQTSGKERL 157
Query: 208 LLSASVLPHVNYT-VYFDVPSITQHLDMITLHAYDF 242
LLSA+V Y ++V I Q+LD + L AYDF
Sbjct: 158 LLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDF 193
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 157/320 (49%), Gaps = 63/320 (19%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++F+ + + L+KY F+GLDL WE+P GS +P +
Sbjct: 95 RQTFVNSAIRFLRKYSFDGLDLDWEYP-----------GS-------------QGSPAVD 130
Query: 349 REHFTLLIREMKAAFRAE-------NFLLSASVLPHVNYT-VYFDVPSITQHLDMITLHA 400
+E FT L++++ AF+ E LLSA+V Y ++V I Q+LD + L A
Sbjct: 131 KERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMA 190
Query: 401 YDFRTPQRNPKEADYSAPLHFVY---GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGR 457
YDF K +++PL+ G N +A V+ +++ G KL+LG+PT+GR
Sbjct: 191 YDFHGSWE--KVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGR 248
Query: 458 SWLLEESSH-KSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQ 516
S+ L SS + G P A G+G G TKE G+L+Y E+C + A+ ++ Q
Sbjct: 249 SFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVC------SWKGATKQRIQDQ 299
Query: 517 EDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+ P Y FR D + WV F++ E+ K SY K GLGG + L LDDF
Sbjct: 300 KVP------YIFR--DNQ-------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Query: 577 RGM-CNSNKFPILRAARTQF 595
G CN ++P+++ R +
Sbjct: 345 AGFSCNQGRYPLIQTLRQEL 364
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 46/216 (21%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G A+ P++L P S+CTHL+Y FAG+++ +L T + + L+++ LK
Sbjct: 16 GEARFLPKDLDP--SLCTHLIYAFAGMTN----------HQLSTTEWNDETLYQEFNGLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +L++GG+ + +K+ +++ R++F+ + + L+KY F+GLDL WE+P
Sbjct: 64 KMNPKLKTLLAIGGW--NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA-------ENF 207
GS +P + +E FT L++++ AF+ E
Sbjct: 122 -----------GS-------------QGSPAVDKERFTTLVQDLANAFQQEAQTSGKERL 157
Query: 208 LLSASVLPHVNYT-VYFDVPSITQHLDMITLHAYDF 242
LLSA+V Y ++V I Q+LD + L AYDF
Sbjct: 158 LLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDF 193
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 142/315 (45%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GWRD------ 125
Query: 349 REHFTLLIREMKAAF------RAENFLLSASVLP-HVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVY--GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + +PL G NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGGWRG--TVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSY 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L SS + G P G G G TKE+G+L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSSTRVGAP---ISGPGIPGQFTKEKGILAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAIK 355
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
PNL +LSVGG+ + E++ ++ + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPNLKTLLSVGGW--NFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GWRD------KRHLTTLVKEMKAEFVREAQAGTEQLL 152
Query: 209 LSASVLP-HVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 141/315 (44%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GRRD------ 125
Query: 349 REHFTLLIREMKAAFR------AENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVY--GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + + +PL G NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGAWR--QTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSF 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L S G P G G G TKE+G+L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSKTDGGAP---ISGPGIPGRFTKEKGILAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAVK 355
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 101/215 (46%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +LSVGG+ + E++ + + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPKLKTLLSVGGW--NFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR------AENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GRRD------KRHLTALVKEMKAEFAREAQAGTERLL 152
Query: 209 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 141/315 (44%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GRRD------ 125
Query: 349 REHFTLLIREMKAAFR------AENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVYGRVPHQ--NANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + + +PL + NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGAWR--QTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSF 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L S G P G G G TKE+G+L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSKTDGGAP---ISGPGIPGRFTKEKGILAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAVK 355
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +LSVGG+ + E++ ++ + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPKLKTLLSVGGW--NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR------AENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GRRD------KRHLTALVKEMKAEFAREAQAGTERLL 152
Query: 209 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 141/315 (44%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GRRD------ 125
Query: 349 REHFTLLIREMKAAF------RAENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVYGRVPHQ--NANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + + +PL + NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGAWR--QTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSF 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L S G P G G G TKE+G+L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSKTDVGAP---VSGPGVPGRFTKEKGILAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAVK 355
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 101/215 (46%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +LSVGG+ + E++ + + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPKLKTLLSVGGW--NFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GRRD------KRHLTTLVKEMKAEFIREAQAGTEQLL 152
Query: 209 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 141/315 (44%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GRRD------ 125
Query: 349 REHFTLLIREMKAAFR------AENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVYGRVPHQ--NANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + + +PL + NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGAWR--QTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSF 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L S G P G G G TKE+G+L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSKTDVGAP---ISGPGIPGRFTKEKGILAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAVK 355
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +LSVGG+ + E++ ++ + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPKLKTLLSVGGW--NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR------AENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GRRD------KRHLTALVKEMKAEFAREAQAGTERLL 152
Query: 209 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 155/348 (44%), Gaps = 75/348 (21%)
Query: 256 MITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 315
++++ ++F PQR K A + + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 72 LLSVGGWNF-GPQRFSKIASKT---------QSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 316 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFL 369
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GRRD------KRHLTTLVKEMKAEFIREAQAGTEQLL 152
Query: 370 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPH 428
LSA+V + +D+ I++HLD I+L YDF R + + +PL
Sbjct: 153 LSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWR--QTVGHHSPLFRGQEDASS 210
Query: 429 Q--NANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITK 486
+ NA+ V + + G KLV+GIPTFG+S+ L S G P G G G TK
Sbjct: 211 RFSNADYAVSYMLRLGAPANKLVMGIPTFGKSFTLASSKTDVGAP---VSGPGIPGQFTK 267
Query: 487 EEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFE 546
E+G+L+Y EIC L T + R Q+ P G WV+++
Sbjct: 268 EKGILAYYEICDFLQGATTHR-----FRDQQVPYATKGN---------------QWVAYD 307
Query: 547 EPETAGYKASYAKLAGLGGVAIIDLSLDDFRG-MCNSN-KFPILRAAR 592
+ E+ KA Y K L G + L LDDFRG C N FP+ A +
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVK 355
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
PNL +LSVGG+ + +++ ++ + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPNLKTLLSVGGW--NFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GRRD------KRHLTTLVKEMKAEFIREAQAGTEQLL 152
Query: 209 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 141/315 (44%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GRRD------ 125
Query: 349 REHFTLLIREMKAAF------RAENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVYGRVPHQ--NANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + + +PL + NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGAWR--QTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSF 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L S G P G G G TKE+G+L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSKTDVGAP---VSGPGIPGRFTKEKGILAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAVK 355
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYTFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P L +LSVGG+ + E++ ++ + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPKLKTLLSVGGW--NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GRRD------KRHLTTLVKEMKAEFIREAQAGTEQLL 152
Query: 209 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 139/315 (44%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GWRD------ 125
Query: 349 REHFTLLIREMKAAF------RAENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVY--GRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + +PL G NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGGWRG--TVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSY 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L S G P G G G TKE+G L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSKTDVGAP---ISGPGIPGQFTKEKGTLAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAIK 355
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
PNL +LSVGG+ + E++ ++ + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPNLKTLLSVGGW--NFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GWRD------KRHLTTLVKEMKAEFVREAQAGTEQLL 152
Query: 209 LSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 140/315 (44%), Gaps = 65/315 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLWP-----------------------GWRD------ 125
Query: 349 REHFTLLIREMKAAF------RAENFLLSASVLP-HVNYTVYFDVPSITQHLDMITLHAY 401
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+L Y
Sbjct: 126 KRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 402 DFRTPQRNPKEADYSAPLHFVYGRVPHQ--NANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
DF R + + +PL + NA+ V + + G KLV+GIPTFGRS+
Sbjct: 186 DFHGAWR--QTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSY 243
Query: 460 LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L S G P G G G TK +G+L+Y EIC L T + R Q+ P
Sbjct: 244 TLASSKTDVGAP---ISGPGIPGRFTKWKGILAYYEICDFLHGATTHR-----FRDQQVP 295
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG- 578
G WV++++ E+ KA Y K L G + L LDDFRG
Sbjct: 296 YATKGN---------------QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGT 340
Query: 579 MCNSN-KFPILRAAR 592
C N FP+ A +
Sbjct: 341 FCGQNLTFPLTSAIK 355
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 50/215 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G P+ + P L CTH++Y FA IS++ E+DT + L+ + LK
Sbjct: 16 GDGSCFPDAIDPFL--CTHVIYSFANISNN----------EIDTWEWNDVTLYDTLNTLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
PNL +LSVGG+ + +++ ++ + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 64 NRNPNLKTLLSVGGW--NYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFL 208
G +D + H T L++EMKA F E L
Sbjct: 122 -----------------------GWRD------KRHLTTLVKEMKAEFVREAQAGTEQLL 152
Query: 209 LSASVLP-HVNYTVYFDVPSITQHLDMITLHAYDF 242
LSA+V + +D+ I++HLD I+L YDF
Sbjct: 153 LSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 139/321 (43%), Gaps = 76/321 (23%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GRRD------ 125
Query: 349 REHFTLLIREMKAAFRAE------NFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAY 401
++HFT LI+EMKA F E LLSA++ V +D+ I+QHLD I++ Y
Sbjct: 126 KQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTY 185
Query: 402 DFRTPQRNP--------KEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIP 453
DF R + + ++P F N + V + + G KLV+GIP
Sbjct: 186 DFHGAWRGTTGHHSPLFRGQEDASPDRF-------SNTDYAVGYMLRLGAPASKLVMGIP 238
Query: 454 TFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLL 513
TFGRS+ L S G P G G G TKE G L+Y EIC L T + +
Sbjct: 239 TFGRSFTLASSETGVGAP---ISGPGIPGRFTKEAGTLAYYEICDFLRGATVHR-----I 290
Query: 514 RKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSL 573
Q+ P G WV +++ E+ K Y K L G + L L
Sbjct: 291 LGQQVPYATKGN---------------QWVGYDDQESVKSKVQYLKDRQLAGAMVWALDL 335
Query: 574 DDFRG-MCNSN-KFPILRAAR 592
DDF+G C + +FP+ A +
Sbjct: 336 DDFQGSFCGQDLRFPLTNAIK 356
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 48/200 (24%)
Query: 50 MCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGF 109
+CTH++Y FA IS+ +DT + L+ + LK PNL +LSVGG+
Sbjct: 29 LCTHIIYSFANISND----------HIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGGW 78
Query: 110 EDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIW 169
+ +++ ++ + + R++FI++ L+ +GF+GLDLAW +P
Sbjct: 79 --NFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP--------------- 121
Query: 170 HKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE------NFLLSASV-LPHVNYTVY 222
G +D ++HFT LI+EMKA F E LLSA++ V
Sbjct: 122 --------GRRD------KQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTIDSS 167
Query: 223 FDVPSITQHLDMITLHAYDF 242
+D+ I+QHLD I++ YDF
Sbjct: 168 YDIAKISQHLDFISIMTYDF 187
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 135/323 (41%), Gaps = 64/323 (19%)
Query: 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPK 341
+D R FI + + L+ + F+GLD++W +P E
Sbjct: 89 MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQKE---------------------- 126
Query: 342 DDNPTLHREHFTLLIREMKAAFRA-------ENFLLSASVLPHVNYT-VYFDVPSITQHL 393
HFT+LI E+ AF+ E LL+A V + V + + L
Sbjct: 127 -------NTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDL 179
Query: 394 DMITLHAYDFRTPQRNPKEADYSAPLHFVY---GRVPHQNANAMVRWFIEHGVELQKLVL 450
D I L ++DF P +++PL + G + N V ++I G+ +K+V+
Sbjct: 180 DFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVM 239
Query: 451 GIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASP 510
GIPT+G S+ L + G P A G G G IT+ G L+Y EIC L A
Sbjct: 240 GIPTYGHSFTLASAETTVGAP---ASGPGAAGPITESSGFLAYYEICQFL-----KGAKI 291
Query: 511 SLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIID 570
+ L+ Q+ P G WV +++ ++ K + K LGG I
Sbjct: 292 TRLQDQQVPYAVKGN---------------QWVGYDDVKSMETKVQFLKNLNLGGAMIWS 336
Query: 571 LSLDDFRG-MCNSNKFPILRAAR 592
+ +DDF G CN +P+++A +
Sbjct: 337 IDMDDFTGKSCNQGPYPLVQAVK 359
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 52/226 (23%)
Query: 37 AKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTF 96
K PE + P L C+HL+Y FA I + +K + DK++ L++ I +LKT
Sbjct: 19 GKFTPENIDPFL--CSHLIYSFASIEN---------NKVIIKDKSE-VMLYQTINSLKTK 66
Query: 97 QPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVV 156
P L I+LS+GG+ + + ++D R FI + + L+ + F+GLD++W +P
Sbjct: 67 NPKLKILLSIGGYLFGS--KGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQ 124
Query: 157 TEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR-------AENFLL 209
E HFT+LI E+ AF+ E LL
Sbjct: 125 KE-----------------------------NTHFTVLIHELAEAFQKDFTKSTKERLLL 155
Query: 210 SASVLPHVNYT-VYFDVPSITQHLDMITLHAYDF-LYFDVPSITQH 253
+A V + V + + LD I L ++DF ++ P IT H
Sbjct: 156 TAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGH 201
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 150/315 (47%), Gaps = 61/315 (19%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P+ R+ FI++ + L++Y F+GL+L W++P + PKD
Sbjct: 92 PQNRQIFIQSVIRFLRQYNFDGLNLDWQYP------------------GSRGSPPKD--- 130
Query: 346 TLHREHFTLLIREMKAAFRAEN-------FLLSASVLPHVNYT-VYFDVPSITQHLDMIT 397
+ F++L++EM+ AF E+ LL+++ ++ + +P ++Q LD I
Sbjct: 131 ---KHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQ 187
Query: 398 LHAYDFRTPQRNPKEADYSAPLH---FVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPT 454
+ YD P+ ++PL+ + G+ N ++++ ++ +HG +KL++G P
Sbjct: 188 VMTYDLHDPKDG--YTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPA 245
Query: 455 FGRSWLLEESSHKSGI-PPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLL 513
+G +++L + S K+GI P ++ G G T E GLL+Y E+C + N A+
Sbjct: 246 YGHTFILSDPS-KTGIGAPTIS--TGPPGKYTDESGLLAYYEVC----TFLNEGATEVWD 298
Query: 514 RKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSL 573
QE P YA++ + WV ++ + KA + K LGG + L +
Sbjct: 299 APQEVP------YAYQGNE---------WVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDM 343
Query: 574 DDFRG-MCNSNKFPI 587
DDF G C+ FP+
Sbjct: 344 DDFSGSFCHQRHFPL 358
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 56/230 (24%)
Query: 41 PEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNL 100
P + P L CTHL+Y FAG+ ++ E+ + ++ + LK L
Sbjct: 22 PGNIDPCL--CTHLIYAFAGMQNN----------EITYTHEQDLRDYEALNGLKDKNTEL 69
Query: 101 NIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKH 160
+L++GG++ + ++ P+ R+ FI++ + L++Y F+GL+L W++P
Sbjct: 70 KTLLAIGGWKFG--PAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYP------ 121
Query: 161 ESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYT 220
+ PKD + F++L++EM+ AF E +
Sbjct: 122 ------------GSRGSPPKD------KHLFSVLVKEMRKAFEEE--------------S 149
Query: 221 VYFDVPSITQHLDMITLHAYDFLY--FDVPSITQHLDMITLHAYDFRTPQ 268
V D+P + L D + + +P ++Q LD I + YD P+
Sbjct: 150 VEKDIPRLL--LTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPK 197
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 67/326 (20%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 342
+ P+ R++FI + + L++Y F+GLD WE+P GS
Sbjct: 93 VSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP-----------GS-------------R 128
Query: 343 DNPTLHREHFTLLIREMKAAFRAE-------NFLLSASVLPHV-NYTVYFDVPSITQHLD 394
+P + FT+L++EM+ AF E +++A+V + N +++P ++Q+LD
Sbjct: 129 GSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLD 188
Query: 395 MITLHAYDFR------TPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKL 448
I + YD T + +P Y P G + N + ++ ++ ++G +KL
Sbjct: 189 YIHVMTYDLHGSWEGYTGENSPL---YKYPTD--TGSNAYLNVDYVMNYWKDNGAPAEKL 243
Query: 449 VLGIPTFGRSWLLEESSHKS-GIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQ 507
++G PT+G +++L S+ G P GAG G KE G+ +Y EIC L +
Sbjct: 244 IVGFPTYGHNFILSNPSNTGIGAP---TSGAGPAGPYAKESGIWAYYEICTFLKN----G 296
Query: 508 ASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVA 567
A+ QE P G WV ++ ++ KA + K GG
Sbjct: 297 ATQGWDAPQEVPYAYQGN---------------VWVGYDNIKSFDIKAQWLKHNKFGGAM 341
Query: 568 IIDLSLDDFRG-MCNSNKFPILRAAR 592
+ + LDDF G CN KFP++ +
Sbjct: 342 VWAIDLDDFTGTFCNQGKFPLISTLK 367
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 46/216 (21%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G + P+++ P L CTHL+Y FAG+ ++ E+ T + L++ LK
Sbjct: 20 GLGRFMPDDINPCL--CTHLIYAFAGMQNN----------EITTIEWNDVTLYQAFNGLK 67
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
L +L++GG+ + + ++ P+ R++FI + + L++Y F+GLD WE+P
Sbjct: 68 NKNSQLKTLLAIGGW--NFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP 125
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE-------NF 207
GS +P + FT+L++EM+ AF E
Sbjct: 126 -----------GS-------------RGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRL 161
Query: 208 LLSASVLPHV-NYTVYFDVPSITQHLDMITLHAYDF 242
+++A+V + N +++P ++Q+LD I + YD
Sbjct: 162 MVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDL 197
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 146/323 (45%), Gaps = 61/323 (18%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 342
+ P+ R++FI + + L++Y F+GLD WE+P GS
Sbjct: 89 VSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP-----------GS-------------R 124
Query: 343 DNPTLHREHFTLLIREMKAAFRAE-------NFLLSASVLPHV-NYTVYFDVPSITQHLD 394
+P + FT+L++EM+ AF E +++A+V + N +++P ++Q+LD
Sbjct: 125 GSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLD 184
Query: 395 MITLHAYDFRTPQRNPKEADYSAPLHFV---YGRVPHQNANAMVRWFIEHGVELQKLVLG 451
I + YD ++PL+ G + N + ++ ++ ++G +KL++G
Sbjct: 185 YIHVMTYDLHGSWEG--YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVG 242
Query: 452 IPTFGRSWLLEESSHKS-GIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASP 510
PT+G +++L S+ G P GAG G KE G+ +Y EIC + A+
Sbjct: 243 FPTYGHNFILSNPSNTGIGAP---TSGAGPAGPYAKESGIWAYYEIC----TFLKNGATQ 295
Query: 511 SLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIID 570
QE P YA+ + WV ++ ++ KA + K GG +
Sbjct: 296 GWDAPQEVP------YAY---------QGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWA 340
Query: 571 LSLDDFRG-MCNSNKFPILRAAR 592
+ LDDF G CN KFP++ +
Sbjct: 341 IDLDDFTGTFCNQGKFPLISTLK 363
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 46/216 (21%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G + P+++ P L CTHL+Y FAG+ ++ E+ T + L++ LK
Sbjct: 16 GLGRFMPDDINPCL--CTHLIYAFAGMQNN----------EITTIEWNDVTLYQAFNGLK 63
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
L +L++GG+ + + ++ P+ R++FI + + L++Y F+GLD WE+P
Sbjct: 64 NKNSQLKTLLAIGGW--NFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP 121
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE-------NF 207
GS +P + FT+L++EM+ AF E
Sbjct: 122 -----------GS-------------RGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRL 157
Query: 208 LLSASVLPHV-NYTVYFDVPSITQHLDMITLHAYDF 242
+++A+V + N +++P ++Q+LD I + YD
Sbjct: 158 MVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDL 193
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 49/282 (17%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P RKSFI++++ ++ GF+GLDL WE+P+ + LG
Sbjct: 89 PNSRKSFIDSSIRLARQLGFHGLDLDWEYPL--SAADMTNLG------------------ 128
Query: 346 TLHREHFTLLIREMKAAFRAENFLLSASV--LPHVNYTVYFDVPSITQHLDMITLHAYDF 403
TL E T + E + + RA LL+A+V P VN + + V S+ ++LD I L AYDF
Sbjct: 129 TLLNEWRTAINTEARNSGRAA-LLLTAAVSNSPRVN-GLNYPVESLARNLDWINLMAYDF 186
Query: 404 RTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEE 463
P +P + + A L + V H + + + +I+ GV +KLVLGIP +G +W L
Sbjct: 187 YGPNWSPSQTNSHAQL---FDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 464 SSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRL 523
++ I L A AG+ ++G ++Y I +V + + +
Sbjct: 244 AN----IHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATI---------V 290
Query: 524 GTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGG 565
G Y + ++ W+S+++ +T K +Y K GL G
Sbjct: 291 GDYCYSGSN---------WISYDDTQTVRNKVNYVKGRGLLG 323
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 36/197 (18%)
Query: 49 SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITA-LKTFQPNLNIMLSVG 107
++ THL FA ++ L++ + + +N+ + F+Q T+ ++ P++ LS+
Sbjct: 23 TLFTHLFCAFADLN-------PQLNQLIISPENQ--DSFRQFTSTVQRKNPSVKTFLSIA 73
Query: 108 GFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 167
G + Y + P RKSFI++++ ++ GF+GLDL WE+P+ + LG
Sbjct: 74 GGRAN--STAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPL--SAADMTNLG- 128
Query: 168 IWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASV--LPHVNYTVYFDV 225
TL E T + E + + RA LL+A+V P VN + + V
Sbjct: 129 -----------------TLLNEWRTAINTEARNSGRAA-LLLTAAVSNSPRVN-GLNYPV 169
Query: 226 PSITQHLDMITLHAYDF 242
S+ ++LD I L AYDF
Sbjct: 170 ESLARNLDWINLMAYDF 186
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 49/282 (17%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P RKSFI++++ ++ GF+GLDL W++P+ + LG
Sbjct: 89 PNSRKSFIDSSIRLARQLGFHGLDLDWQYPL--SAADMTNLG------------------ 128
Query: 346 TLHREHFTLLIREMKAAFRAENFLLSASV--LPHVNYTVYFDVPSITQHLDMITLHAYDF 403
TL E T + E + + RA LL+A+V P VN + + V S+ ++LD I L AYDF
Sbjct: 129 TLLNEWRTAINTEARNSGRAA-LLLTAAVSNSPRVN-GLNYPVESLARNLDWINLMAYDF 186
Query: 404 RTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEE 463
P +P + + A L + V H + + + +I+ GV +KLVLGIP +G +W L
Sbjct: 187 YGPNWSPSQTNSHAQL---FDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 464 SSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRL 523
++ I L A AG+ ++G ++Y I +V + + +
Sbjct: 244 AN----IHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATI---------V 290
Query: 524 GTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGG 565
G Y + ++ W+S+++ +T K +Y K GL G
Sbjct: 291 GDYCYSGSN---------WISYDDTQTVRNKVNYVKGRGLLG 323
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 36/197 (18%)
Query: 49 SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITA-LKTFQPNLNIMLSVG 107
++ THL FA ++ L++ + + +N+ + F+Q T+ ++ P++ LS+
Sbjct: 23 TLFTHLFCAFADLN-------PQLNQLIISPENQ--DSFRQFTSTVQRKNPSVKTFLSIA 73
Query: 108 GFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 167
G + Y + P RKSFI++++ ++ GF+GLDL W++P+ + LG
Sbjct: 74 GGRAN--STAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPL--SAADMTNLG- 128
Query: 168 IWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASV--LPHVNYTVYFDV 225
TL E T + E + + RA LL+A+V P VN + + V
Sbjct: 129 -----------------TLLNEWRTAINTEARNSGRAA-LLLTAAVSNSPRVN-GLNYPV 169
Query: 226 PSITQHLDMITLHAYDF 242
S+ ++LD I L AYDF
Sbjct: 170 ESLARNLDWINLMAYDF 186
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 126/307 (41%), Gaps = 50/307 (16%)
Query: 274 ADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKI 333
AD +A +P RKSFI++++ + YGF+GLDL WE+P + E G
Sbjct: 78 ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP--SSATEMTNFG------ 129
Query: 334 KKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVN-YTVYFDVPSITQH 392
TL RE + ++ E ++ + LL+A+V N Y+V + V ++
Sbjct: 130 ------------TLLREWRSAVVAEASSSGKPR-LLLAAAVFYSNNYYSVLYPVSAVASS 176
Query: 393 LDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGI 452
LD + L AYDF P + P + +A R +I+ G+ +K VLG
Sbjct: 177 LDWVNLMAYDFYGPGWSRVTGP---PAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGF 233
Query: 453 PTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSL 512
P +G +W L ++ S P G +G + Y +I +V S
Sbjct: 234 PYYGYAWRLTNANSHSYYAPTT-------GAAISPDGSIGYGQIRKFIVDNGATTVYNST 286
Query: 513 LRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572
+ +G Y + + W+ +++ ++ K YAK GL G +
Sbjct: 287 V---------VGDYCYAGTN---------WIGYDDNQSIVTKVRYAKQRGLLGYFSWHVG 328
Query: 573 LDDFRGM 579
DD G+
Sbjct: 329 ADDNSGL 335
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 32/195 (16%)
Query: 49 SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGG 108
S+ THL FA D + ++ + + F Q + P++ +LS+GG
Sbjct: 24 SLFTHLFCAFA------DLNSQTNQVTVSSANQPKFSTFTQTVQRR--NPSVKTLLSIGG 75
Query: 109 FEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSI 168
DK Y + +P RKSFI++++ + YGF+GLDL WE+P + E G
Sbjct: 76 --GIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP--SSATEMTNFG-- 129
Query: 169 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVN-YTVYFDVPS 227
TL RE + ++ E ++ + LL+A+V N Y+V + V +
Sbjct: 130 ----------------TLLREWRSAVVAEASSSGKPR-LLLAAAVFYSNNYYSVLYPVSA 172
Query: 228 ITQHLDMITLHAYDF 242
+ LD + L AYDF
Sbjct: 173 VASSLDWVNLMAYDF 187
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 131/306 (42%), Gaps = 53/306 (17%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R+ F + V L+KY F+G+DL WE+PV G + K+ P+D
Sbjct: 148 REVFANSAVDFLRKYNFDGVDLDWEYPVS---------GGLDGNSKR----PED------ 188
Query: 349 REHFTLLIREMK------AAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 402
++++TLL+ +++ A + +LL+ + Y ++ I +D I + YD
Sbjct: 189 KQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANTELAKIAAIVDWINIMTYD 248
Query: 403 FRTPQRNPKEADYSAPLHF----VYGRVPHQ---NANAMVRWFIEHGVELQKLVLGIPTF 455
F + K + ++APL++ VP N A + ++ GV KLVLG+P +
Sbjct: 249 FNGAWQ--KISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFY 306
Query: 456 GRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRK 515
GR W + + G GT E G + ++ ++ R
Sbjct: 307 GRGW--DGCAQAGNGQYQTCTGGSSVGTW--EAGSFDFYDLEANYINKN------GYTRY 356
Query: 516 QEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDD 575
D + Y + ++K+ +S+++ E+ GYK +Y K GLGG +LS D
Sbjct: 357 WNDTAKV--PYLYNASNKRF-------ISYDDAESVGYKTAYIKSKGLGGAMFWELSGDR 407
Query: 576 FRGMCN 581
+ + N
Sbjct: 408 NKTLQN 413
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Query: 87 FKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNG 146
Q+ LK PNL ++SVGG+ + ++ +V R+ F + V L+KY F+G
Sbjct: 110 INQLNKLKQTNPNLKTIISVGGWTWSN---RFSDVAATAATREVFANSAVDFLRKYNFDG 166
Query: 147 LDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMK------A 200
+DL WE+PV G + K+ P+D ++++TLL+ +++
Sbjct: 167 VDLDWEYPVS---------GGLDGNSKR----PED------KQNYTLLLSKIREKLDAAG 207
Query: 201 AFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A + +LL+ + Y ++ I +D I + YDF
Sbjct: 208 AVDGKKYLLTIASGASATYAANTELAKIAAIVDWINIMTYDF 249
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 116/293 (39%), Gaps = 63/293 (21%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
RK+F +T V L+ GF+GLD+ WE+P ++ + L L
Sbjct: 115 RKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVL--------------------LL 154
Query: 349 REHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTP-- 406
RE T L A ++FLL+ + + + + Q LD L AYD+
Sbjct: 155 REVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFS 214
Query: 407 -----QRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLL 461
Q N D S PL + N + + GV K+VLG+P +GRS+
Sbjct: 215 SLSGHQANVYN-DTSNPLSTPF------NTQTALDLYRAGGVPANKIVLGMPLYGRSFAN 267
Query: 462 EESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQR 521
+ K P G G + E G+ Y + PQ A A+ +L
Sbjct: 268 TDGPGK----PYNGVGQG-----SWENGVWDYKAL-PQ------AGATEHVLPD------ 305
Query: 522 RLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574
+ +Y++ +K L +S++ P+ A K+ Y K GLGG D S D
Sbjct: 306 IMASYSYDATNKFL-------ISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 35/212 (16%)
Query: 41 PEELKPALSMCTHLVYGFAGIS-DSGDYHIKSLDKEL------DTDKNKGKELF---KQI 90
P++L + TH++Y FA + ++G+ ++ ++ D+ + G ++ KQ+
Sbjct: 23 PQDLP--VERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQL 80
Query: 91 TALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLA 150
LK NL ++LS+GG+ + RK+F +T V L+ GF+GLD+
Sbjct: 81 YLLKKQNRNLKVLLSIGGWTY---SPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDID 137
Query: 151 WEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLS 210
WE+P ++ + L L RE T L A ++FLL+
Sbjct: 138 WEYPENDQQANDFVL--------------------LLREVRTALDSYSAANAGGQHFLLT 177
Query: 211 ASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
+ + + + Q LD L AYD+
Sbjct: 178 VASPAGPDKIKVLHLKDMDQQLDFWNLMAYDY 209
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 78 TDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDD----KEKYLEVLDDPKYRKSFIE 133
T+ K +++ ++TALK P+L IM S+GG+ +D Y+ + P R F +
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQ 125
Query: 134 TTVAALKKYGFNGLDLAWEFPVVTE 158
+ V +K YGF+G+D+ WE+P E
Sbjct: 126 SCVRIMKDYGFDGVDINWEYPQAAE 150
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 118/332 (35%), Gaps = 75/332 (22%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P R F ++ V +K YGF+G+D+ WE+P E + + ++
Sbjct: 117 PASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE-------------VDGFIAALQEIRT 163
Query: 346 TLHREHFT----LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
L+++ T L ++ A F LS Y + I LD I L Y
Sbjct: 164 LLNQQTITDGRQALPYQLTIAGAGGAFFLS---------RYYSKLAQIVAPLDYINLMTY 214
Query: 402 DFRTPQRNPKE------ADYSAPLHFVYGRVPHQNANAMVRW------------------ 437
D P D + P + R AN W
Sbjct: 215 DLAGPWEKVTNHQAALFGDAAGPTFYNALR----EANLGWSWEELTRAFPSPFSLTVDAA 270
Query: 438 ----FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSY 493
+ GV K+V+G+P +GR+ + S +G GE + + L+
Sbjct: 271 VQQHLMMEGVPSAKIVMGVPFYGRA--FKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG- 327
Query: 494 AEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAF-RLADKKLKQEY------GTWVSFE 546
C + V P + ++ Q G Y + RL + K K Y G +V+++
Sbjct: 328 ---CEECVR----DKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYD 380
Query: 547 EPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+ E+ YKA Y K LGGV L D+ G
Sbjct: 381 DAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 78 TDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDD----KEKYLEVLDDPKYRKSFIE 133
T+ K +++ ++TALK P+L IM S+GG+ +D Y+ + P R F +
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQ 125
Query: 134 TTVAALKKYGFNGLDLAWEFPVVTE 158
+ V +K YGF+G+D+ WE+P E
Sbjct: 126 SCVRIMKDYGFDGVDINWEYPQAAE 150
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 118/332 (35%), Gaps = 75/332 (22%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P R F ++ V +K YGF+G+D+ WE+P E + + ++
Sbjct: 117 PASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAE-------------VDGFIAALQEIRT 163
Query: 346 TLHREHFT----LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
L+++ T L ++ A F LS Y + I LD I L Y
Sbjct: 164 LLNQQTITDGRQALPYQLTIAGAGGAFFLS---------RYYSKLAQIVAPLDYINLMTY 214
Query: 402 DFRTPQRNPKE------ADYSAPLHFVYGRVPHQNANAMVRW------------------ 437
D P D + P + R AN W
Sbjct: 215 DLAGPWEKVTNHQAALFGDAAGPTFYNALR----EANLGWSWEELTRAFPSPFSLTVDAA 270
Query: 438 ----FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSY 493
+ GV K+V+G+P +GR+ + S +G GE + + L+
Sbjct: 271 VQQHLMMEGVPSAKIVMGVPFYGRA--FKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG- 327
Query: 494 AEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAF-RLADKKLKQEY------GTWVSFE 546
C + V P + ++ Q G Y + RL + K K Y G +V+++
Sbjct: 328 ---CEECVR----DKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYD 380
Query: 547 EPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+ E+ YKA Y K LGGV L D+ G
Sbjct: 381 DAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 78 TDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDD----KEKYLEVLDDPKYRKSFIE 133
T+ K +++ ++TALK P+L IM S+GG+ +D Y+ + P R F +
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQ 125
Query: 134 TTVAALKKYGFNGLDLAWEFPVVTE 158
+ V +K YGF+G+D+ WE+P E
Sbjct: 126 SCVRIMKDYGFDGVDIDWEYPQAAE 150
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 116/334 (34%), Gaps = 79/334 (23%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P R F ++ V +K YGF+G+D+ WE+P E + + ++
Sbjct: 117 PASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE-------------VDGFIAALQEIRT 163
Query: 346 TLHREHFT----LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
L+++ T L ++ A F LS Y + I LD I L Y
Sbjct: 164 LLNQQTITDGRQALPYQLTIAGAGGAFFLS---------RYYSKLAQIVAPLDYINLMTY 214
Query: 402 DFRTPQRNPKE------ADYSAPLHFVYGRVPHQNANAMVRW------------------ 437
D P D + P + R AN W
Sbjct: 215 DLAGPWEKVTNHQAALFGDAAGPTFYNALR----EANLGWSWEELTRAFPSPFSLTVDAA 270
Query: 438 ----FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSY 493
+ GV K+V+G+P +GR++ V+ G G + + G Y
Sbjct: 271 VQQHLMMEGVPSAKIVMGVPFYGRAF------------KGVSGGNGGQYSSHSTPGEDPY 318
Query: 494 AEICPQLVSITNA--QASPSLLRKQEDPQRRLGTYAF-RLADKKLKQEY------GTWVS 544
LV P + ++ Q G Y + RL + K K Y G +V+
Sbjct: 319 PSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVT 378
Query: 545 FEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+++ E+ YKA Y K LGGV L D+ G
Sbjct: 379 YDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 78 TDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDD----KEKYLEVLDDPKYRKSFIE 133
T+ K +++ ++TALK P+L IM S+GG+ +D Y+ + P R F +
Sbjct: 65 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQ 124
Query: 134 TTVAALKKYGFNGLDLAWEFPVVTE 158
+ V +K YGF+G+D+ WE+P E
Sbjct: 125 SCVRIMKDYGFDGVDIDWEYPQAAE 149
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 116/334 (34%), Gaps = 79/334 (23%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P R F ++ V +K YGF+G+D+ WE+P E + + ++
Sbjct: 116 PASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAE-------------VDGFIAALQEIRT 162
Query: 346 TLHREHFT----LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
L+++ T L ++ A F LS Y + I LD I L Y
Sbjct: 163 LLNQQTITDGRQALPYQLTIAGAGGAFFLS---------RYYSKLAQIVAPLDYINLMTY 213
Query: 402 DFRTPQRNPKE------ADYSAPLHFVYGRVPHQNANAMVRW------------------ 437
D P D + P + R AN W
Sbjct: 214 DLAGPWEKVTNHQAALFGDAAGPTFYNALR----EANLGWSWEELTRAFPSPFSLTVDAA 269
Query: 438 ----FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSY 493
+ GV K+V+G+P +GR++ V+ G G + + G Y
Sbjct: 270 VQQHLMMEGVPSAKIVMGVPFYGRAF------------KGVSGGNGGQYSSHSTPGEDPY 317
Query: 494 AEICPQLVSITNA--QASPSLLRKQEDPQRRLGTYAF-RLADKKLKQEY------GTWVS 544
LV P + ++ Q G Y + RL + K K Y G +V+
Sbjct: 318 PSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVT 377
Query: 545 FEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+++ E+ YKA Y K LGGV L D+ G
Sbjct: 378 YDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 411
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 78 TDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDD----KEKYLEVLDDPKYRKSFIE 133
T+ K +++ ++TALK P+L IM S+GG+ +D Y+ + P R F +
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQ 125
Query: 134 TTVAALKKYGFNGLDLAWEFPVVTE 158
+ V +K YGF+G+D+ WE+P E
Sbjct: 126 SCVRIMKDYGFDGVDIDWEYPQAAE 150
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 118/332 (35%), Gaps = 75/332 (22%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P R F ++ V +K YGF+G+D+ WE+P E + + ++
Sbjct: 117 PASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAE-------------VDGFIAALQEIRT 163
Query: 346 TLHREHFT----LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
L+++ T L ++ A F LS Y + I LD I L Y
Sbjct: 164 LLNQQTITDGRQALPYQLTIAGAGGAFFLS---------RYYSKLAQIVAPLDYINLMTY 214
Query: 402 DFRTPQRNPKE------ADYSAPLHFVYGRVPHQNANAMVRW------------------ 437
D P D + P + R AN W
Sbjct: 215 DLAGPWEKVTNHQAALFGDAAGPTFYNALR----EANLGWSWEELTRAFPSPFSLTVDAA 270
Query: 438 ----FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSY 493
+ GV K+V+G+P +GR+ + S +G GE + + L+
Sbjct: 271 VQQHLMMEGVPSAKIVMGVPFYGRA--FKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG- 327
Query: 494 AEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAF-RLADKKLKQEY------GTWVSFE 546
C + V P + ++ Q G Y + RL + K K Y G +V+++
Sbjct: 328 ---CEECVR----DKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYD 380
Query: 547 EPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+ E+ YKA Y K LGGV L D+ G
Sbjct: 381 DAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 78 TDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDD----KEKYLEVLDDPKYRKSFIE 133
T+ K +++ ++TALK P+L IM S+GG+ +D Y+ + P R F +
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQ 125
Query: 134 TTVAALKKYGFNGLDLAWEFPVVTE 158
+ V +K YGF+G+D+ W++P E
Sbjct: 126 SCVRIMKDYGFDGVDIDWQYPQAAE 150
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 116/334 (34%), Gaps = 79/334 (23%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P R F ++ V +K YGF+G+D+ W++P E + + ++
Sbjct: 117 PASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAE-------------VDGFIAALQEIRT 163
Query: 346 TLHREHFT----LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
L+++ T L ++ A F LS Y + I LD I L Y
Sbjct: 164 LLNQQTITDGRQALPYQLTIAGAGGAFFLS---------RYYSKLAQIVAPLDYINLMTY 214
Query: 402 DFRTPQRNPKE------ADYSAPLHFVYGRVPHQNANAMVRW------------------ 437
D P D + P + R AN W
Sbjct: 215 DLAGPWEKVTNHQAALFGDAAGPTFYNALR----EANLGWSWEELTRAFPSPFSLTVDAA 270
Query: 438 ----FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSY 493
+ GV K+V+G+P +GR++ V+ G G + + G Y
Sbjct: 271 VQQHLMMEGVPSAKIVMGVPFYGRAF------------KGVSGGNGGQYSSHSTPGEDPY 318
Query: 494 AEICPQLVSITNA--QASPSLLRKQEDPQRRLGTYAF-RLADKKLKQEY------GTWVS 544
LV P + ++ Q G Y + RL + K K Y G +V+
Sbjct: 319 PSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVT 378
Query: 545 FEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+++ E+ YKA Y K LGGV L D+ G
Sbjct: 379 YDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 116/293 (39%), Gaps = 63/293 (21%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
RK+F +T V L+ GF+GLD+ WE+P ++ + L L
Sbjct: 153 RKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVL--------------------LL 192
Query: 349 REHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTP-- 406
+E T L A ++FLL+ + + + + Q LD L AYD+
Sbjct: 193 KEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFS 252
Query: 407 -----QRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLL 461
Q N D S PL + N + + GV K+VLG+P +GRS+
Sbjct: 253 SLSGHQANVYN-DTSNPLSTPF------NTQTALDLYRAGGVPANKIVLGMPLYGRSFAN 305
Query: 462 EESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQR 521
+ K P G G + E G+ Y + PQ A A+ +L
Sbjct: 306 TDGPGK----PYNGVGQG-----SWENGVWDYKAL-PQ------AGATEHVLPD------ 343
Query: 522 RLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574
+ +Y++ +K L +S++ P+ A K+ Y K GLGG D S D
Sbjct: 344 IMASYSYDATNKFL-------ISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 37/246 (15%)
Query: 9 SKDTRMEDHLSKDQYHIHSNLYFISSGT--AKVGPEELKPALSMCTHLVYGFAGIS-DSG 65
++DT D ++ S +YF++ P++L + TH++Y FA + ++G
Sbjct: 27 NRDTSSTDLEARASSGYRSVVYFVNWAIYGRNHNPQDLP--VERLTHVLYAFANVRPETG 84
Query: 66 DYHIKSLDKEL------DTDKNKGKELF---KQITALKTFQPNLNIMLSVGGFEDDDDKE 116
+ ++ ++ D+ + G ++ KQ+ LK NL ++LS+GG+
Sbjct: 85 EVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTY---SP 141
Query: 117 KYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 176
+ RK+F +T V L+ GF+GLD+ WE+P ++ + L
Sbjct: 142 NFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVL----------- 190
Query: 177 TGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMIT 236
L +E T L A ++FLL+ + + + + Q LD
Sbjct: 191 ---------LLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKDMDQQLDFWN 241
Query: 237 LHAYDF 242
L AYD+
Sbjct: 242 LMAYDY 247
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 78 TDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDD----KEKYLEVLDDPKYRKSFIE 133
T+ K +++ ++TALK P+L IM S+GG+ +D Y+ + P R F +
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQ 125
Query: 134 TTVAALKKYGFNGLDLAWEFPVVTE 158
+ V +K YGF+G+++ WE+P E
Sbjct: 126 SCVRIMKDYGFDGVNIDWEYPQAAE 150
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 118/332 (35%), Gaps = 75/332 (22%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
P R F ++ V +K YGF+G+++ WE+P E + + ++
Sbjct: 117 PASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAE-------------VDGFIAALQEIRT 163
Query: 346 TLHREHFT----LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
L+++ T L ++ A F LS Y + I LD I L Y
Sbjct: 164 LLNQQTITDGRQALPYQLTIAGAGGAFFLS---------RYYSKLAQIVAPLDYINLMTY 214
Query: 402 DFRTPQRNPKE------ADYSAPLHFVYGRVPHQNANAMVRW------------------ 437
D P D + P + R AN W
Sbjct: 215 DLAGPWEKVTNHQAALFGDAAGPTFYNALR----EANLGWSWEELTRAFPSPFSLTVDAA 270
Query: 438 ----FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSY 493
+ GV K+V+G+P +GR+ + S +G GE + + L+
Sbjct: 271 VQQHLMMEGVPSAKIVMGVPFYGRA--FKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVG- 327
Query: 494 AEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAF-RLADKKLKQEY------GTWVSFE 546
C + V P + ++ Q G Y + RL + K K Y G +V+++
Sbjct: 328 ---CEECVR----DKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYD 380
Query: 547 EPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+ E+ YKA Y K LGGV L D+ G
Sbjct: 381 DAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 44/229 (19%)
Query: 30 YFISSGTAKVGP--EELKPALSMCTHLVYGF------------AGISDSGDYHIKSLDKE 75
YF G GP + K + THL Y F A + D H L +
Sbjct: 31 YFNGGGDVTAGPGGDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLSPK 90
Query: 76 LDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETT 135
+ D +++ AL+ P+L ++LSVGG+ + + R FI +
Sbjct: 91 VQAD-------LQKLPALRKQNPDLKVLLSVGGW----GARGFSGAAATAESRAVFIRSA 139
Query: 136 VAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLI 195
+++YG +G+DL WEFPV W + + P D R++FT L+
Sbjct: 140 QKIIQQYGLDGIDLDWEFPV----------NGAWGLV---ASQPAD------RDNFTALL 180
Query: 196 REMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLY 244
+ ++ A + + A + + DV ++ L+ I L YD Y
Sbjct: 181 KSLREAVGEQKLVTIAVGANAESPKSWVDVKAVAPVLNYINLXTYDXAY 229
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 38/299 (12%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R FI + +++YG +G+DL WEFPV W + + P D
Sbjct: 132 RAVFIRSAQKIIQQYGLDGIDLDWEFPV----------NGAWGLV---ASQPAD------ 172
Query: 349 REHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQR 408
R++FT L++ ++ A + + A + + DV ++ L+ I L YD +
Sbjct: 173 RDNFTALLKSLREAVGEQKLVTIAVGANAESPKSWVDVKAVAPVLNYINLXTYDXAYGTQ 232
Query: 409 NPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKS 468
Y + +A+ +V ++ G++ + LGI +GR + + + +
Sbjct: 233 YFNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPSQXNLGIGFYGR---VPKRAVEP 289
Query: 469 GIPPLVADGAGEKGTITK----EEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLG 524
GI AD + +T+ + + +A + L T + + + + DPQ+R
Sbjct: 290 GIDWTKAD--AQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYNDIVGKLLNDPQKRFT 347
Query: 525 TY--------AFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDD 575
+ + + K + +S+E P + KA Y K GL G + DD
Sbjct: 348 EHWDDEAKVPWLSVQSAEGKPLFA--LSYENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 116/292 (39%), Gaps = 61/292 (20%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
R +F +T V +K +GF+G+D+ WE+P + L + ++++ + D +
Sbjct: 130 RATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVL--LLQRVRQEL----DSYSATY 183
Query: 349 RE--HFTLLIREMKAAFRAENFLLS--ASVLPHVNYTVYFDVPSITQHLDMITLHAYDFR 404
HF L I L+ SVL ++N Y D ++ H +
Sbjct: 184 ANGYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNINLMAY----DYAGSWDSVSGHQTNLY 239
Query: 405 TPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEES 464
NP +S A V +I GV K++LG+P +GR+++ +
Sbjct: 240 PSTSNPSSTPFS--------------TKAAVDAYIAAGVPASKIILGMPIYGRAFVGTDG 285
Query: 465 SHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVS--ITNAQASPSLLRKQEDPQRR 522
K P G G + E G+ Y ++ P+ + IT++ A
Sbjct: 286 PGK----PYSTIGEG-----SWESGIWDY-KVLPKAGATVITDSAAG------------- 322
Query: 523 LGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574
TY++ + + + +S++ P+ K SYAK GLGG + S D
Sbjct: 323 -ATYSYDSSSRTM-------ISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 24/160 (15%)
Query: 13 RMEDHLSKDQYHIHSN----LYFISSGTAKVGPEELKPA---LSMCTHLVYGFA-----G 60
RMED S D + +YF + G + +PA S H++Y F G
Sbjct: 5 RMEDLASTDLSTRATGSINAVYFTNWG---IYGRNFQPADLQASKILHVLYSFMNLRVDG 61
Query: 61 ISDSGDYHIKSLDKELDTDK-----NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDK 115
SGD + L+K D KQ+ LK +L IMLS+GG+
Sbjct: 62 TVYSGDTYAD-LEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTW---S 117
Query: 116 EKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 155
+ R +F +T V +K +GF+G+D+ WE+P
Sbjct: 118 TNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPA 157
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 66/244 (27%)
Query: 25 IHSNLYFISSGTAKVG--PEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDK-- 80
S +YF++ G P++LK TH++Y FA I SG+ ++ D DTDK
Sbjct: 3 FRSVVYFVNWAIYGRGHNPQDLKA--DQFTHILYAFANIRPSGEVYLS--DTWADTDKHY 58
Query: 81 ---------NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDP----KY 127
N KQ+ LK NL +LS+GG+ Y P +
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWT-------YSPNFKTPASTEEG 111
Query: 128 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 187
RK F +T++ +K GF+G+D+ WE+P EK +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDINWEYP-EDEKQAN------------------------- 145
Query: 188 REHFTLLIREMKAAFRA--------ENFLLS-ASVLPHVNYTVYFDVPSITQHLDMITLH 238
F LL++ + A A + FLL+ AS NY + + ++LD L
Sbjct: 146 --DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLM 202
Query: 239 AYDF 242
AYDF
Sbjct: 203 AYDF 206
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 117/304 (38%), Gaps = 85/304 (27%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
RK F +T++ +K GF+G+D+ WE+P EK +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDINWEYPE-DEKQAN------------------------- 145
Query: 349 REHFTLLIREMKAAFRA--------ENFLLS-ASVLPHVNYTVYFDVPSITQHLDMITLH 399
F LL++ + A A + FLL+ AS NY + + ++LD L
Sbjct: 146 --DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLM 202
Query: 400 AYDFRTPQRNPKEADYSAPLHFVYGRV--PHQ---NANAMVRWFIEHGVELQKLVLGIPT 454
AYDF S + V+ P +++ V+ +I+ GV K+VLG+P
Sbjct: 203 AYDFSGSWDK-----VSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPL 257
Query: 455 FGRSWLLEESSHKSGIPPLVADGAGEK----GTITKEEGLLSYAEICPQLVSITNAQASP 510
+GR++ DG G G + E G+ Y ++ Q +T +
Sbjct: 258 YGRAF-------------ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTELEDIA 304
Query: 511 SLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIID 570
+ +Y++ + L +S++ + AG KA Y G+GG +
Sbjct: 305 A-------------SYSYDKNKRYL-------ISYDTVKIAGKKAEYITKNGMGGGMWWE 344
Query: 571 LSLD 574
S D
Sbjct: 345 SSSD 348
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 66/244 (27%)
Query: 25 IHSNLYFISSGTAKVG--PEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDK-- 80
S +YF++ G P++LK TH++Y FA I SG+ ++ D DTDK
Sbjct: 3 FRSVVYFVNWAIYGRGHNPQDLKA--DQFTHILYAFANIRPSGEVYLS--DTWADTDKHY 58
Query: 81 ---------NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDP----KY 127
N KQ+ LK NL +LS+GG+ Y P +
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWT-------YSPNFKTPASTEEG 111
Query: 128 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 187
RK F +T++ +K GF+G+D+ WE+P EK +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDIDWEYP-EDEKQAN------------------------- 145
Query: 188 REHFTLLIREMKAAFRA--------ENFLLS-ASVLPHVNYTVYFDVPSITQHLDMITLH 238
F LL++ + A A + FLL+ AS NY + + ++LD L
Sbjct: 146 --DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLM 202
Query: 239 AYDF 242
AYDF
Sbjct: 203 AYDF 206
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 117/304 (38%), Gaps = 85/304 (27%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
RK F +T++ +K GF+G+D+ WE+P EK +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDIDWEYPE-DEKQAN------------------------- 145
Query: 349 REHFTLLIREMKAAFRA--------ENFLLS-ASVLPHVNYTVYFDVPSITQHLDMITLH 399
F LL++ + A A + FLL+ AS NY + + ++LD L
Sbjct: 146 --DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLM 202
Query: 400 AYDFRTPQRNPKEADYSAPLHFVYGRV--PHQ---NANAMVRWFIEHGVELQKLVLGIPT 454
AYDF S + V+ P +++ V+ +I+ GV K+VLG+P
Sbjct: 203 AYDFSGSWDK-----VSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPL 257
Query: 455 FGRSWLLEESSHKSGIPPLVADGAGEK----GTITKEEGLLSYAEICPQLVSITNAQASP 510
+GR++ DG G G + E G+ Y ++ Q +T +
Sbjct: 258 YGRAF-------------ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTELEDIA 304
Query: 511 SLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIID 570
+ +Y++ + L +S++ + AG KA Y G+GG +
Sbjct: 305 A-------------SYSYDKNKRYL-------ISYDTVKIAGKKAEYITKNGMGGGMWWE 344
Query: 571 LSLD 574
S D
Sbjct: 345 SSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 66/244 (27%)
Query: 25 IHSNLYFISSGTAKVG--PEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDK-- 80
S +YF++ G P++LK TH++Y FA I SG+ ++ D DTDK
Sbjct: 3 FRSVVYFVNWAIYGRGHNPQDLKA--DQFTHILYAFANIRPSGEVYLS--DTWADTDKHY 58
Query: 81 ---------NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDP----KY 127
N KQ+ LK NL +LS+GG+ Y P +
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWT-------YSPNFKTPASTEEG 111
Query: 128 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 187
RK F +T++ +K GF+G+D+ W++P EK +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDIDWQYP-EDEKQAN------------------------- 145
Query: 188 REHFTLLIREMKAAFRA--------ENFLLS-ASVLPHVNYTVYFDVPSITQHLDMITLH 238
F LL++ + A A + FLL+ AS NY + + ++LD L
Sbjct: 146 --DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLM 202
Query: 239 AYDF 242
AYDF
Sbjct: 203 AYDF 206
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 117/304 (38%), Gaps = 85/304 (27%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
RK F +T++ +K GF+G+D+ W++P EK +
Sbjct: 112 RKKFADTSLKLMKDLGFDGIDIDWQYPE-DEKQAN------------------------- 145
Query: 349 REHFTLLIREMKAAFRA--------ENFLLS-ASVLPHVNYTVYFDVPSITQHLDMITLH 399
F LL++ + A A + FLL+ AS NY + + ++LD L
Sbjct: 146 --DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLM 202
Query: 400 AYDFRTPQRNPKEADYSAPLHFVYGRV--PHQ---NANAMVRWFIEHGVELQKLVLGIPT 454
AYDF S + V+ P +++ V+ +I+ GV K+VLG+P
Sbjct: 203 AYDFSGSWDK-----VSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPL 257
Query: 455 FGRSWLLEESSHKSGIPPLVADGAGEK----GTITKEEGLLSYAEICPQLVSITNAQASP 510
+GR++ DG G G + E G+ Y ++ Q +T +
Sbjct: 258 YGRAF-------------ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTELEDIA 304
Query: 511 SLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIID 570
+ +Y++ + L +S++ + AG KA Y G+GG +
Sbjct: 305 A-------------SYSYDKNKRYL-------ISYDTVKIAGKKAEYITKNGMGGGMWWE 344
Query: 571 LSLD 574
S D
Sbjct: 345 SSSD 348
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 99/253 (39%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+AWEFP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIAGQFMS 465
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 40/182 (21%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202
F+G+D+AWEFP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIAWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRA-- 321
Query: 203 RAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAY 262
L SV Y + +I+ D I AY+ +D I L +Y
Sbjct: 322 ----MLDQLSVETGRKYEL---TSAISAGKDKIDKVAYNV-------AQNSMDHIFLMSY 367
Query: 263 DF 264
DF
Sbjct: 368 DF 369
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 99/253 (39%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ WEFP K + LGS
Sbjct: 278 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP--GGKGANPNLGS------- 328
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKA------AFRAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A A + L++++ + V Y V
Sbjct: 329 ----PQDG------ETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNV- 377
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 378 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 418
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 419 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 475
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 476 IVDYRQIASQFMS 488
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 42/172 (24%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 250 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 305
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA-- 200
F+G+D+ WEFP K + LGS P+D E + LL++E++A
Sbjct: 306 FFDGVDIDWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRAML 346
Query: 201 ----AFRAENFLLSASV------LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A + L++++ + V Y V +D I L +YDF
Sbjct: 347 DQLSAETGRKYELTSAISAGKDKIDKVAYNV------AQNSMDHIFLMSYDF 392
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 99/253 (39%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ WEFP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKA------AFRAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLTQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIASQFMS 465
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 42/172 (24%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA-- 200
F+G+D+ WEFP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRAML 323
Query: 201 ----AFRAENFLLSASV------LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A + L++++ + V Y V +D I L +YDF
Sbjct: 324 DQLSAETGRKYELTSAISAGKDKIDKVAYNV------AQNSMDHIFLMSYDF 369
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 99/253 (39%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ WEFP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKA------AFRAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLTQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIASQFMS 465
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 42/172 (24%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA-- 200
F+G+D+ WEFP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRAML 323
Query: 201 ----AFRAENFLLSASV------LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A + L++++ + V Y V +D I L +YDF
Sbjct: 324 DQLSAETGRKYELTSAISAGKDKIDKVAYNV------AQNSMDHIFLMSYDF 369
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ WEFP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIAGQFMS 465
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 40/182 (21%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202
F+G+D+ WEFP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRA-- 321
Query: 203 RAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAY 262
L SV Y + +I+ D I AY+ +D I L +Y
Sbjct: 322 ----MLDQLSVETGRKYEL---TSAISAGKDKIDKVAYNV-------AQNSMDHIFLMSY 367
Query: 263 DF 264
DF
Sbjct: 368 DF 369
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ WEFP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSTETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIAGQFMS 465
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 42/172 (24%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202
F+G+D+ WEFP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRAML 323
Query: 203 ------RAENFLLSASV------LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
+ L++++ + V Y V +D I L +YDF
Sbjct: 324 DQLSTETGRKYELTSAISAGKDKIDKVAYNV------AQNSMDHIFLMSYDF 369
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 126/341 (36%), Gaps = 58/341 (17%)
Query: 268 QRNP--------KEADYSAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVT 318
QRNP S P + D K R +F+ + LK + F +G+D+ WEFP
Sbjct: 240 QRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGG 299
Query: 319 EKHESYTLGSIWHKIKKTVTGPKDDNPT---LHREHFTLLIREMKAAFRAENFLLSASVL 375
P +D P L RE +++ E++A + L++++
Sbjct: 300 GAAAD-------------KGDPVNDGPAYIALMRE-LRVMLDELEAE-TGRTYELTSAIG 344
Query: 376 PHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNP---KEADYSA----PLHFVYGRV-- 426
+ D Q++D I YDF N + A Y P G V
Sbjct: 345 VGYDKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDE 404
Query: 427 -------PHQNANAMVRWFIEHGVELQKLVLGIPTFGRSW-LLEESSHKSGIPPLVADGA 478
P A+ ++ + GV KLVLG +GR W + + P+
Sbjct: 405 NGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTAT 464
Query: 479 GE-KGTITK---EEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKK 534
G+ KG+ + E+G++ Y I ++ N + G A A
Sbjct: 465 GKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGIN----------GFEYGYDAQAEAPWV 514
Query: 535 LKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDD 575
+ G ++F++ + K +YAK GL G+ ++ D+
Sbjct: 515 WNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K + + ALK P+L I+ S+GG D ++ D K R +F+ + LK +
Sbjct: 229 KGNYAMLMALKQRNPDLKIIPSIGGGTLSDPFYDFV----DKKNRDTFVASVKKFLKTWK 284
Query: 144 F-NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP---TLHREHFTLLIREMK 199
F +G+D+ WEFP P +D P L RE +++ E++
Sbjct: 285 FYDGVDIDWEFPGGGGAAAD-------------KGDPVNDGPAYIALMRE-LRVMLDELE 330
Query: 200 AAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A + L++++ + D Q++D I YDF
Sbjct: 331 AE-TGRTYELTSAIGVGYDKIEDVDYADAVQYMDYIFAMTYDF 372
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 122/324 (37%), Gaps = 50/324 (15%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P + D K R +F+ + LK + F +G+D+ WEFP
Sbjct: 257 SDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAAD------------ 304
Query: 336 TVTGPKDDNPT---LHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQH 392
P +D P L RE +++ E++A + L++++ + D Q+
Sbjct: 305 -KGDPVNDGPAYIALMRE-LRVMLDELEAE-TGRTYELTSAIGVGYDKIEDVDYADAVQY 361
Query: 393 LDMITLHAYDFRTPQRNP---KEADYSA----PLHFVYGRV---------PHQNANAMVR 436
+D I YDF N + A Y P G V P A+ ++
Sbjct: 362 MDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQ 421
Query: 437 WFIEHGVELQKLVLGIPTFGRSW-LLEESSHKSGIPPLVADGAGE-KGTITK---EEGLL 491
+ GV KLVLG +GR W + + P+ G+ KG+ + E+G++
Sbjct: 422 LLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVI 481
Query: 492 SYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETA 551
Y I ++ N + G A A + G ++F++ +
Sbjct: 482 DYKGIKSFMLGANNTGIN----------GFEYGYDAQAEAPWVWNRSTGELITFDDHRSV 531
Query: 552 GYKASYAKLAGLGGVAIIDLSLDD 575
K +YAK GL G+ ++ D+
Sbjct: 532 LAKGNYAKSLGLAGLFSWEIDADN 555
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 23/163 (14%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K + + ALK P+L I+ S+GG+ D ++ D K R +F+ + LK +
Sbjct: 229 KGNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFV----DKKNRDTFVASVKKFLKTWK 284
Query: 144 F-NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP---TLHREHFTLLIREMK 199
F +G+D+ WEFP P +D P L RE +++ E++
Sbjct: 285 FYDGVDIDWEFPGGGGAAAD-------------KGDPVNDGPAYIALMRE-LRVMLDELE 330
Query: 200 AAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A + L++++ + D Q++D I YDF
Sbjct: 331 AE-TGRTYELTSAIGVGYDKIEDVDYADAVQYMDYIFAMTYDF 372
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ W+FP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIAGQFMS 465
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 40/182 (21%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202
F+G+D+ W+FP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWQFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRA-- 321
Query: 203 RAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAY 262
L SV Y + +I+ D I AY+ +D I L +Y
Sbjct: 322 ----MLDQLSVETGRKYEL---TSAISAGKDKIDKVAYNV-------AQNSMDHIFLMSY 367
Query: 263 DF 264
DF
Sbjct: 368 DF 369
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ WEFP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L ++DF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSFDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIAGQFMS 465
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 24/118 (20%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 200
F+G+D+ WEFP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRA 321
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 97/253 (38%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ W FP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWLFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +YDF Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYDF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIASQFMS 465
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 40/182 (21%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202
F+G+D+ W FP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWLFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRA-- 321
Query: 203 RAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAY 262
L SV Y + +I+ D I AY+ +D I L +Y
Sbjct: 322 ----MLDQLSVETGRKYEL---TSAISAGKDKIDKVAYNV-------AQNSMDHIFLMSY 367
Query: 263 DF 264
DF
Sbjct: 368 DF 369
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 97/253 (38%), Gaps = 69/253 (27%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P F+ D R F+ + L+ + F +G+D+ WEFP K + LGS
Sbjct: 255 SDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP--GGKGANPNLGS------- 305
Query: 336 TVTGPKDDNPTLHREHFTLLIREMKAAF------RAENFLLSASV------LPHVNYTVY 383
P+D E + LL++E++A + L++++ + V Y V
Sbjct: 306 ----PQDG------ETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNV- 354
Query: 384 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRW------ 437
+D I L +Y F Y A F + HQ A W
Sbjct: 355 -----AQNSMDHIFLMSYAF-----------YGA---FDLKNLGHQTALNAPAWKPDTAY 395
Query: 438 --------FIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEG 489
+ GV+ K+V+G +GR W + +++ IP KGT E G
Sbjct: 396 TTVNGVNALLAQGVKPGKIVVGTAMYGRGW-TGVNGYQNNIPFTGTATGPVKGTW--ENG 452
Query: 490 LLSYAEICPQLVS 502
++ Y +I Q +S
Sbjct: 453 IVDYRQIAGQFMS 465
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 24/118 (20%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K F Q+ ALK P+L I+ S+GG+ D + D R F+ + L+ +
Sbjct: 227 KGNFGQLMALKQAHPDLKILPSIGGWTLSDP----FFFMGDKVKRDRFVGSVKEFLQTWK 282
Query: 144 -FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 200
F+G+D+ WEFP K + LGS P+D E + LL++E++A
Sbjct: 283 FFDGVDIDWEFP--GGKGANPNLGS-----------PQDG------ETYVLLMKELRA 321
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 121/324 (37%), Gaps = 50/324 (15%)
Query: 277 SAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335
S P + D K R +F+ + LK + F +G+D+ W FP
Sbjct: 257 SDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAAD------------ 304
Query: 336 TVTGPKDDNPT---LHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQH 392
P +D P L RE +++ E++A + L++++ + D Q+
Sbjct: 305 -KGDPVNDGPAYIALMRE-LRVMLDELEAE-TGRTYELTSAIGVGYDKIEDVDYADAVQY 361
Query: 393 LDMITLHAYDFRTPQRNP---KEADYSA----PLHFVYGRV---------PHQNANAMVR 436
+D I YDF N + A Y P G V P A+ ++
Sbjct: 362 MDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQ 421
Query: 437 WFIEHGVELQKLVLGIPTFGRSW-LLEESSHKSGIPPLVADGAGE-KGTITK---EEGLL 491
+ GV KLVLG +GR W + + P+ G+ KG+ + E+G++
Sbjct: 422 LLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVI 481
Query: 492 SYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETA 551
Y I ++ N + G A A + G ++F++ +
Sbjct: 482 DYKGIKSFMLGANNTGIN----------GFEYGYDAQAEAPWVWNRSTGELITFDDHRSV 531
Query: 552 GYKASYAKLAGLGGVAIIDLSLDD 575
K +YAK GL G+ ++ D+
Sbjct: 532 LAKGNYAKSLGLAGLFSWEIDADN 555
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K + + ALK P+L I+ S+GG+ D ++ D K R +F+ + LK +
Sbjct: 229 KGNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFV----DKKNRDTFVASVKKFLKTWK 284
Query: 144 F-NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP---TLHREHFTLLIREMK 199
F +G+D+ W FP P +D P L RE +++ E++
Sbjct: 285 FYDGVDIDWMFPGGGGAAAD-------------KGDPVNDGPAYIALMRE-LRVMLDELE 330
Query: 200 AAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A + L++++ + D Q++D I YDF
Sbjct: 331 AE-TGRTYELTSAIGVGYDKIEDVDYADAVQYMDYIFAMTYDF 372
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 103/284 (36%), Gaps = 64/284 (22%)
Query: 305 FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 364
F+G+D+ WE+P + ++ R +F L+ E +
Sbjct: 175 FDGIDIDWEWPGTNSGLAGNGVDTV-----------------NDRANFKALLAEFRKQLD 217
Query: 365 A------ENFLLSASVLPHVNYTV---YFDVPSITQHLDMITLHAYDFRTPQRNPKEADY 415
A + ++LSA LP + +D P+ + LD ++ YD NP +
Sbjct: 218 AYGSTNNKKYVLSA-FLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAW-NPTLTGH 275
Query: 416 SAPLHF--VYGRVPHQ--NANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIP 471
A L+ R P + +A+ V+ ++ G++ ++L LG+ +GR W
Sbjct: 276 QANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWT----------- 324
Query: 472 PLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLA 531
G K + P + A + + D + LGT + A
Sbjct: 325 -------GAK-------------NVSPWGPATDGAPGTYETANEDYDKLKTLGTDHYDAA 364
Query: 532 DKKLKQEYGT-WVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574
+ GT W S++ T K Y GLGG +LS D
Sbjct: 365 TGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGD 408
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 42 EELKPALSM--CTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPN 99
E L P + TH+ FA + G +I + K +++ + TA K N
Sbjct: 18 ESLFPTIEWKYLTHINASFARVKADGTLNINPVRKRIESVRE---------TAHK---HN 65
Query: 100 LNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWE 152
+ I++S+ + ++ ++DPK RK I+ +A K+Y +G D+ +E
Sbjct: 66 VKILISLA----KNSPGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYE 114
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 65/219 (29%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 342
++DPK RK I+ +A K+Y +G D+ +E Y
Sbjct: 84 INDPKARKELIQQIIAFTKEYKLDGFDI---------DYEEY------------------ 116
Query: 343 DNPTLHREHFTLLIREMKAAFRAENFLLSASVLPH-VNYTVYFDVPSITQHLDMITLHAY 401
DN + + R + A + +N L + +V +NY ++ Q+ D I L +Y
Sbjct: 117 DNWDKNFPSLLVFARGLYLA-KEKNXLXTCAVNSRWLNYGTEWE-----QYFDYINLXSY 170
Query: 402 DFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVR----WFIEHGVELQKLVLGIPTFGR 457
D P V H + + V+ W + K+V G+P +G
Sbjct: 171 DRGAFTDKP---------------VQHASYDDFVKDLKYWNEQCRASKSKIVGGLPFYGY 215
Query: 458 SWLLEESSHK----------SGIPPLVADGAGEKGTITK 486
SW EES SGI + + A +K I K
Sbjct: 216 SW--EESLQGAVDDVRGIRYSGILKHLGNEAADKDNIGK 252
>pdb|3N13|A Chain A, Crystal Stricture Of D143a Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHE 161
++LS+GG + + +L D + FI + + + KYGF+G+D+A E + ++
Sbjct: 75 VVLSIGG-------QNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIALESGIYLNGND 127
Query: 162 S 162
+
Sbjct: 128 T 128
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 89 QITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLD 148
QI+A+K+ PN+ + +S+GG + ++ D + + + + +++Y +G+D
Sbjct: 65 QISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVD-SWVSNAVTSLTRIIQRYNLDGID 123
Query: 149 LAWEFPVVTEKHE-SYTLGSIWHKIKK 174
+ +E T+K+ + +G + +KK
Sbjct: 124 IDYEHFQNTDKNTFAECIGRLITTLKK 150
>pdb|3SK9|A Chain A, Crystal Structure Of The Thermus Thermophilus Cas3 Hd
Domain
pdb|3SKD|A Chain A, Crystal Structure Of The Thermus Thermophilus Cas3 Hd
Domain In The Presence Of Ni2+
Length = 265
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 457 RSWLLEESSHKSG--IPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLR 514
R WLLEE + G +PP +G + + L S+A+ + PSL
Sbjct: 170 RRWLLEEVFRRLGAPLPPSQGNGEARPEAVLRVMALASFADWV---------ASDPSLFP 220
Query: 515 KQEDPQRRLGTY---AFRLADKKLKQ 537
DP+R G Y A RLA + L +
Sbjct: 221 YGRDPRR--GDYLKEALRLAQEALNR 244
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 55 VYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDD 112
V G + + +Y +K ++K+ +++ +F+++ L Q N NI+ + FEDD
Sbjct: 29 VQGAVSLQNGKEYAVKIIEKQAGHSRSR---VFREVETLYQCQGNKNILELIEFFEDD 83
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHE 161
++LS+GG + + +L D + FI + + + KYGF+G+D+ E + ++
Sbjct: 75 VVLSIGG-------QNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLESGIYLNGND 127
Query: 162 S 162
+
Sbjct: 128 T 128
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 35/185 (18%)
Query: 79 DKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAA 138
++ K K L L L LS+GG+ + E+ D R +F+E
Sbjct: 189 NQEKAKGLLGGFRLLHEADKELEFSLSIGGWSM---SGLFSEIAKDEILRTNFVEGIKDF 245
Query: 139 LKKYG-FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIRE 197
+++ F+ LD+ WE+P GSI G + N +F +LI++
Sbjct: 246 FQRFPMFSHLDIDWEYP-----------GSI---------GAGNPNSPDDGANFAILIQQ 285
Query: 198 MKAA--FRAENFLLSASVLPHVNYTVYFDVPSITQHLDM----ITLHAYDFLYFDVPSIT 251
+ A + +++S P D +I +D I L YDF ++
Sbjct: 286 ITDAKISNLKGISIASSADP-----AKIDAANIPALMDAGVTGINLMTYDFFTLGDGKLS 340
Query: 252 QHLDM 256
H ++
Sbjct: 341 HHTNI 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,105,850
Number of Sequences: 62578
Number of extensions: 851211
Number of successful extensions: 2167
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1784
Number of HSP's gapped (non-prelim): 182
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)