Query psy11626
Match_columns 596
No_of_seqs 267 out of 2196
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:28:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02873 GH18_IDGF The IDGF's ( 100.0 1.1E-77 2.4E-82 646.3 41.0 409 21-595 1-413 (413)
2 cd02872 GH18_chitolectin_chito 100.0 1E-68 2.2E-73 570.7 36.0 356 22-595 1-362 (362)
3 KOG2806|consensus 100.0 3.3E-61 7.2E-66 520.0 33.2 367 15-595 47-420 (432)
4 COG3325 ChiA Chitinase [Carboh 100.0 8E-61 1.7E-65 492.3 29.1 365 19-595 37-436 (441)
5 cd02878 GH18_zymocin_alpha Zym 100.0 2.1E-59 4.5E-64 494.5 33.0 333 22-574 2-345 (345)
6 smart00636 Glyco_18 Glycosyl h 100.0 5.8E-58 1.3E-62 482.8 33.3 326 22-574 2-334 (334)
7 cd02879 GH18_plant_chitinase_c 100.0 8.6E-58 1.9E-62 473.1 31.8 287 21-579 4-298 (299)
8 cd06548 GH18_chitinase The GH1 100.0 5.2E-58 1.1E-62 480.3 30.1 309 22-574 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 5.1E-52 1.1E-56 438.4 28.2 341 20-574 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 2E-50 4.3E-55 422.4 25.9 305 21-576 4-312 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 1.5E-47 3.2E-52 405.2 32.0 272 89-581 68-346 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 4.3E-46 9.4E-51 389.0 27.7 284 48-577 23-308 (313)
13 cd06545 GH18_3CO4_chitinase Th 100.0 1.1E-42 2.3E-47 352.5 26.3 252 22-591 1-253 (253)
14 cd06549 GH18_trifunctional GH1 100.0 8.3E-42 1.8E-46 353.7 27.8 275 48-577 21-296 (298)
15 cd00598 GH18_chitinase-like Th 100.0 8.5E-33 1.8E-37 271.9 22.3 151 22-216 1-151 (210)
16 cd06544 GH18_narbonin Narbonin 100.0 1.3E-30 2.9E-35 262.1 23.1 140 38-215 12-155 (253)
17 cd06546 GH18_CTS3_chitinase GH 100.0 1.9E-29 4.2E-34 255.1 22.1 148 22-213 2-150 (256)
18 COG3858 Predicted glycosyl hyd 100.0 2.9E-29 6.3E-34 258.5 21.4 236 115-578 179-414 (423)
19 cd02871 GH18_chitinase_D-like 100.0 3.5E-27 7.6E-32 246.0 26.4 153 20-213 1-155 (312)
20 cd06542 GH18_EndoS-like Endo-b 99.8 7.1E-20 1.5E-24 185.9 16.0 176 22-242 3-178 (255)
21 cd06543 GH18_PF-ChiA-like PF-C 99.8 2.2E-19 4.8E-24 184.6 13.6 154 49-244 24-183 (294)
22 cd02877 GH18_hevamine_XipI_cla 99.8 3.2E-18 7E-23 174.8 21.2 123 50-213 24-162 (280)
23 KOG2091|consensus 99.8 1E-17 2.2E-22 165.9 23.7 308 15-573 74-383 (392)
24 cd06542 GH18_EndoS-like Endo-b 99.6 1.8E-14 3.8E-19 146.4 19.8 126 283-457 83-208 (255)
25 cd02873 GH18_IDGF The IDGF's ( 99.4 1.1E-12 2.3E-17 142.1 11.5 116 186-333 166-281 (413)
26 COG3469 Chitinase [Carbohydrat 99.4 1.6E-12 3.4E-17 125.8 11.0 191 12-266 18-214 (332)
27 cd06543 GH18_PF-ChiA-like PF-C 99.3 6.9E-11 1.5E-15 121.9 16.2 96 283-406 83-184 (294)
28 cd06548 GH18_chitinase The GH1 99.2 5.4E-11 1.2E-15 125.0 8.0 104 189-316 155-261 (322)
29 cd02876 GH18_SI-CLP Stabilin-1 99.1 2.7E-10 5.8E-15 119.6 9.5 101 188-333 133-236 (318)
30 cd02872 GH18_chitolectin_chito 99.1 6.3E-10 1.4E-14 118.9 11.2 80 222-334 170-251 (362)
31 cd02878 GH18_zymocin_alpha Zym 99.1 5.7E-10 1.2E-14 118.3 10.2 110 188-335 138-250 (345)
32 COG3325 ChiA Chitinase [Carboh 99.0 1.2E-09 2.6E-14 114.3 9.6 68 282-368 145-212 (441)
33 cd02875 GH18_chitobiase Chitob 99.0 1.9E-09 4.1E-14 114.7 10.4 71 222-332 169-239 (358)
34 cd06549 GH18_trifunctional GH1 98.9 2.9E-09 6.2E-14 110.7 7.3 66 281-375 81-146 (298)
35 cd06545 GH18_3CO4_chitinase Th 98.8 1.9E-08 4.1E-13 102.1 11.4 64 282-375 77-140 (253)
36 cd02879 GH18_plant_chitinase_c 98.8 1.1E-08 2.3E-13 106.4 9.5 69 281-377 85-160 (299)
37 cd06544 GH18_narbonin Narbonin 98.8 3E-08 6.5E-13 100.3 10.9 128 285-459 94-221 (253)
38 PF00704 Glyco_hydro_18: Glyco 98.7 2.2E-08 4.8E-13 105.7 7.9 116 188-337 138-255 (343)
39 cd02874 GH18_CFLE_spore_hydrol 98.7 4.1E-08 8.9E-13 102.8 9.7 71 218-333 155-225 (313)
40 smart00636 Glyco_18 Glycosyl h 98.7 3.2E-08 6.9E-13 104.5 6.9 69 281-376 84-157 (334)
41 cd06546 GH18_CTS3_chitinase GH 98.5 6E-07 1.3E-11 91.2 12.0 118 283-454 91-217 (256)
42 KOG2806|consensus 98.5 1.4E-07 3E-12 102.9 7.3 119 188-337 189-308 (432)
43 cd02871 GH18_chitinase_D-like 98.5 8.5E-07 1.9E-11 92.8 10.7 138 283-455 89-248 (312)
44 cd00598 GH18_chitinase-like Th 98.2 3.7E-06 8.1E-11 82.4 7.7 46 245-310 159-204 (210)
45 cd06547 GH85_ENGase Endo-beta- 98.0 2.4E-05 5.3E-10 82.4 8.6 86 90-205 51-138 (339)
46 COG3469 Chitinase [Carbohydrat 97.9 4.8E-05 1E-09 74.5 8.2 133 289-454 119-266 (332)
47 COG3858 Predicted glycosyl hyd 97.8 2.7E-05 5.7E-10 82.0 6.6 69 281-378 184-252 (423)
48 KOG4701|consensus 97.8 0.0015 3.3E-08 67.5 17.5 191 50-319 52-259 (568)
49 cd02877 GH18_hevamine_XipI_cla 97.5 0.00056 1.2E-08 70.4 9.7 122 284-455 89-229 (280)
50 PF02638 DUF187: Glycosyl hydr 97.1 0.0024 5.2E-08 66.8 10.2 150 284-457 134-299 (311)
51 PF03644 Glyco_hydro_85: Glyco 97.1 0.001 2.2E-08 69.5 7.3 85 90-204 47-133 (311)
52 PF11340 DUF3142: Protein of u 96.9 0.01 2.2E-07 56.3 11.5 83 287-401 23-107 (181)
53 PF02638 DUF187: Glycosyl hydr 96.8 0.0029 6.3E-08 66.2 7.6 120 123-264 134-263 (311)
54 cd06547 GH85_ENGase Endo-beta- 96.6 0.0086 1.9E-07 63.3 9.4 128 281-460 79-216 (339)
55 PF11340 DUF3142: Protein of u 96.2 0.023 4.9E-07 54.0 8.5 84 124-240 22-107 (181)
56 TIGR01370 cysRS possible cyste 96.2 0.27 5.7E-06 51.4 17.2 187 88-370 85-300 (315)
57 PF13200 DUF4015: Putative gly 95.8 0.93 2E-05 47.4 18.9 106 285-405 119-230 (316)
58 PF03644 Glyco_hydro_85: Glyco 95.4 0.036 7.7E-07 58.0 7.0 122 282-458 76-209 (311)
59 KOG2091|consensus 95.3 0.042 9.1E-07 56.0 6.8 55 188-243 205-264 (392)
60 PF13200 DUF4015: Putative gly 94.9 0.2 4.4E-06 52.3 10.8 98 130-241 124-227 (316)
61 PF14883 GHL13: Hypothetical g 92.6 8.4 0.00018 39.6 17.0 129 50-206 30-184 (294)
62 cd02810 DHOD_DHPD_FMN Dihydroo 89.4 7.3 0.00016 40.1 13.6 89 84-215 83-171 (289)
63 cd04740 DHOD_1B_like Dihydroor 88.7 6.6 0.00014 40.6 12.8 88 84-214 75-162 (296)
64 PRK07259 dihydroorotate dehydr 87.5 7.8 0.00017 40.2 12.4 87 85-214 78-165 (301)
65 PF02065 Melibiase: Melibiase; 86.4 12 0.00026 40.6 13.3 35 283-317 162-196 (394)
66 PLN02495 oxidoreductase, actin 83.6 17 0.00037 39.3 12.8 57 84-157 98-154 (385)
67 cd04733 OYE_like_2_FMN Old yel 83.6 3.7 8.1E-05 43.5 7.8 69 127-215 147-225 (338)
68 cd04734 OYE_like_3_FMN Old yel 82.6 17 0.00037 38.6 12.4 75 126-217 138-219 (343)
69 TIGR00542 hxl6Piso_put hexulos 82.5 28 0.00061 35.5 13.7 66 285-374 85-153 (279)
70 PF13199 Glyco_hydro_66: Glyco 82.2 8.8 0.00019 43.4 10.4 64 284-366 238-302 (559)
71 PRK13209 L-xylulose 5-phosphat 82.1 25 0.00055 35.8 13.2 66 285-374 90-158 (283)
72 TIGR03234 OH-pyruv-isom hydrox 81.4 25 0.00055 35.2 12.7 60 290-373 83-142 (254)
73 cd06595 GH31_xylosidase_XylS-l 80.7 6.7 0.00015 40.6 8.3 33 283-315 128-160 (292)
74 KOG4701|consensus 80.0 7 0.00015 41.2 7.9 87 350-455 164-257 (568)
75 cd06592 GH31_glucosidase_KIAA1 79.8 9.2 0.0002 39.9 9.0 34 283-316 134-167 (303)
76 PF14871 GHL6: Hypothetical gl 79.6 5.3 0.00011 36.4 6.2 66 84-151 43-132 (132)
77 PRK09997 hydroxypyruvate isome 79.0 34 0.00073 34.5 12.7 60 290-373 84-143 (258)
78 cd06591 GH31_xylosidase_XylS X 78.6 8.1 0.00018 40.6 8.2 35 282-316 127-161 (319)
79 PRK12677 xylose isomerase; Pro 78.3 65 0.0014 34.8 15.2 55 132-213 33-87 (384)
80 cd00019 AP2Ec AP endonuclease 78.1 40 0.00086 34.3 13.1 22 133-154 13-34 (279)
81 PRK08318 dihydropyrimidine deh 78.0 35 0.00076 37.3 13.3 82 86-202 86-167 (420)
82 PF01261 AP_endonuc_2: Xylose 77.7 14 0.00031 35.2 9.2 66 292-380 72-138 (213)
83 cd02930 DCR_FMN 2,4-dienoyl-Co 77.6 35 0.00075 36.4 12.8 113 84-215 76-213 (353)
84 PRK13210 putative L-xylulose 5 77.4 56 0.0012 33.1 14.0 66 285-374 85-153 (284)
85 KOG2331|consensus 77.1 7.7 0.00017 41.7 7.3 78 98-205 123-201 (526)
86 cd02940 DHPD_FMN Dihydropyrimi 77.0 47 0.001 34.5 13.3 83 85-202 85-167 (299)
87 cd04738 DHOD_2_like Dihydrooro 76.4 37 0.0008 35.8 12.5 82 85-203 116-197 (327)
88 PF13199 Glyco_hydro_66: Glyco 76.2 6.8 0.00015 44.3 7.1 65 122-205 237-302 (559)
89 cd06602 GH31_MGAM_SI_GAA This 75.3 9.3 0.0002 40.5 7.6 35 282-316 133-167 (339)
90 PRK01060 endonuclease IV; Prov 75.1 62 0.0014 32.8 13.6 24 132-155 14-37 (281)
91 PRK05286 dihydroorotate dehydr 72.3 69 0.0015 34.0 13.4 71 98-203 136-206 (344)
92 PRK09856 fructoselysine 3-epim 72.3 65 0.0014 32.5 12.8 65 285-373 81-148 (275)
93 cd06600 GH31_MGAM-like This fa 71.6 16 0.00035 38.3 8.3 35 282-316 128-162 (317)
94 PRK13523 NADPH dehydrogenase N 71.1 29 0.00063 36.8 10.1 67 84-152 80-164 (337)
95 PRK14582 pgaB outer membrane N 70.9 25 0.00054 40.8 10.1 98 50-152 347-467 (671)
96 COG1649 Uncharacterized protei 70.4 6.7 0.00014 42.6 5.1 121 124-265 180-310 (418)
97 PRK07565 dihydroorotate dehydr 70.0 70 0.0015 33.8 12.7 79 84-203 87-165 (334)
98 PF14871 GHL6: Hypothetical gl 70.0 62 0.0013 29.4 10.6 31 282-312 102-132 (132)
99 cd04724 Tryptophan_synthase_al 67.7 1.4E+02 0.003 30.0 14.7 44 356-402 118-162 (242)
100 PLN03231 putative alpha-galact 67.5 67 0.0014 34.4 11.8 29 287-315 159-187 (357)
101 TIGR01037 pyrD_sub1_fam dihydr 67.0 49 0.0011 34.2 10.7 87 86-215 78-166 (300)
102 cd06594 GH31_glucosidase_YihQ 67.0 17 0.00037 38.1 7.3 34 282-315 134-167 (317)
103 cd02932 OYE_YqiM_FMN Old yello 66.9 22 0.00047 37.6 8.1 71 127-216 152-231 (336)
104 cd04741 DHOD_1A_like Dihydroor 66.8 1E+02 0.0022 32.0 12.9 89 84-215 74-166 (294)
105 cd06599 GH31_glycosidase_Aec37 66.7 23 0.00049 37.2 8.2 34 282-315 136-169 (317)
106 PF00834 Ribul_P_3_epim: Ribul 66.5 61 0.0013 31.7 10.6 42 354-402 96-137 (201)
107 cd06601 GH31_lyase_GLase GLase 66.1 21 0.00045 37.8 7.8 32 284-316 104-135 (332)
108 PRK14581 hmsF outer membrane N 65.9 97 0.0021 36.1 13.5 96 50-151 347-466 (672)
109 cd06589 GH31 The enzymes of gl 65.1 19 0.0004 36.7 7.0 29 289-317 91-119 (265)
110 PF14883 GHL13: Hypothetical g 64.6 1E+02 0.0023 31.8 12.0 162 254-455 81-263 (294)
111 PF00724 Oxidored_FMN: NADH:fl 64.3 34 0.00073 36.3 9.0 87 127-224 147-234 (341)
112 cd02803 OYE_like_FMN_family Ol 64.0 62 0.0013 33.8 10.9 24 128-152 140-163 (327)
113 cd06593 GH31_xylosidase_YicI Y 63.5 29 0.00064 36.1 8.3 33 283-316 129-161 (308)
114 TIGR00736 nifR3_rel_arch TIM-b 63.3 1.7E+02 0.0036 29.3 13.6 85 88-215 59-143 (231)
115 cd02929 TMADH_HD_FMN Trimethyl 62.6 39 0.00084 36.3 9.1 70 127-216 148-227 (370)
116 cd04735 OYE_like_4_FMN Old yel 61.8 26 0.00057 37.3 7.6 73 126-217 141-226 (353)
117 cd04747 OYE_like_5_FMN Old yel 61.6 58 0.0013 34.9 10.1 26 127-153 142-167 (361)
118 PF10566 Glyco_hydro_97: Glyco 61.5 60 0.0013 33.4 9.7 46 293-370 108-153 (273)
119 cd04739 DHOD_like Dihydroorota 61.3 1.1E+02 0.0025 32.1 12.2 53 84-155 85-137 (325)
120 TIGR01036 pyrD_sub2 dihydrooro 60.6 1.4E+02 0.0031 31.5 12.9 76 93-203 128-203 (335)
121 PF02065 Melibiase: Melibiase; 60.4 28 0.0006 37.8 7.5 74 122-214 162-235 (394)
122 COG1649 Uncharacterized protei 60.3 19 0.00042 39.1 6.2 112 285-402 180-308 (418)
123 PRK09989 hypothetical protein; 60.0 1.9E+02 0.004 29.0 13.2 60 290-373 84-143 (258)
124 PF14885 GHL15: Hypothetical g 59.9 9.7 0.00021 31.4 3.0 42 107-150 32-74 (79)
125 PF14488 DUF4434: Domain of un 59.0 1.6E+02 0.0035 27.7 13.1 95 50-156 33-133 (166)
126 cd06604 GH31_glucosidase_II_Ma 57.7 33 0.00071 36.3 7.5 33 283-316 129-161 (339)
127 PF14587 Glyco_hydr_30_2: O-Gl 56.6 16 0.00034 39.3 4.7 77 124-214 149-225 (384)
128 PRK12568 glycogen branching en 56.3 1.7E+02 0.0038 34.4 13.4 30 282-311 379-408 (730)
129 TIGR01515 branching_enzym alph 55.0 1.4E+02 0.0031 34.3 12.6 30 283-312 267-296 (613)
130 TIGR02631 xylA_Arthro xylose i 53.7 2.6E+02 0.0056 30.2 13.6 50 135-213 37-88 (382)
131 smart00518 AP2Ec AP endonuclea 53.7 2.4E+02 0.0053 28.3 13.0 50 134-211 14-63 (273)
132 TIGR00742 yjbN tRNA dihydrouri 53.6 1.3E+02 0.0028 31.6 11.0 72 97-203 52-123 (318)
133 cd02801 DUS_like_FMN Dihydrour 50.3 80 0.0017 30.9 8.6 74 95-203 50-123 (231)
134 PRK02506 dihydroorotate dehydr 49.5 95 0.0021 32.5 9.3 80 84-203 77-157 (310)
135 KOG1552|consensus 49.5 43 0.00094 33.9 6.3 50 396-459 89-139 (258)
136 KOG2331|consensus 49.4 54 0.0012 35.5 7.2 60 279-366 142-201 (526)
137 PF02057 Glyco_hydro_59: Glyco 48.8 24 0.00052 40.5 4.8 86 86-208 114-203 (669)
138 COG1306 Uncharacterized conser 48.6 49 0.0011 34.2 6.5 99 130-244 196-300 (400)
139 cd04733 OYE_like_2_FMN Old yel 47.7 97 0.0021 32.7 9.1 93 289-401 148-258 (338)
140 CHL00200 trpA tryptophan synth 46.8 2.3E+02 0.005 28.9 11.3 67 293-400 108-175 (263)
141 cd02933 OYE_like_FMN Old yello 46.5 87 0.0019 33.2 8.5 69 127-216 150-228 (338)
142 PLN02899 alpha-galactosidase 46.0 2.6E+02 0.0057 32.1 12.3 28 288-315 192-219 (633)
143 cd04735 OYE_like_4_FMN Old yel 45.9 1.6E+02 0.0034 31.4 10.4 105 289-403 143-259 (353)
144 cd04734 OYE_like_3_FMN Old yel 45.7 1.1E+02 0.0024 32.5 9.1 100 288-401 139-251 (343)
145 PRK05402 glycogen branching en 44.7 1.7E+02 0.0036 34.6 11.2 31 282-312 375-405 (726)
146 PRK08255 salicylyl-CoA 5-hydro 44.2 64 0.0014 38.2 7.8 71 127-217 549-629 (765)
147 PRK13125 trpA tryptophan synth 43.9 2.9E+02 0.0063 27.6 11.5 44 356-402 118-161 (244)
148 PRK11815 tRNA-dihydrouridine s 43.1 84 0.0018 33.2 7.7 70 98-202 63-132 (333)
149 PF00834 Ribul_P_3_epim: Ribul 42.6 1E+02 0.0022 30.1 7.7 66 135-241 72-137 (201)
150 cd06591 GH31_xylosidase_XylS X 42.1 1.3E+02 0.0029 31.5 9.0 35 122-156 128-162 (319)
151 PRK13523 NADPH dehydrogenase N 42.0 1.5E+02 0.0032 31.5 9.3 25 289-314 141-165 (337)
152 PLN02411 12-oxophytodienoate r 41.9 76 0.0017 34.4 7.3 78 127-216 163-241 (391)
153 PRK12313 glycogen branching en 41.8 3.4E+02 0.0074 31.4 13.0 30 283-312 281-310 (633)
154 TIGR02402 trehalose_TreZ malto 41.6 82 0.0018 35.7 7.8 67 84-151 159-245 (542)
155 PRK10550 tRNA-dihydrouridine s 41.1 99 0.0021 32.4 7.8 80 99-214 62-141 (312)
156 PF02055 Glyco_hydro_30: O-Gly 40.9 1E+02 0.0022 34.6 8.2 104 87-207 156-270 (496)
157 PRK10550 tRNA-dihydrouridine s 40.0 76 0.0016 33.3 6.7 90 292-400 77-169 (312)
158 PRK08745 ribulose-phosphate 3- 39.4 2.9E+02 0.0063 27.4 10.4 43 353-402 100-142 (223)
159 PRK14706 glycogen branching en 39.1 1E+02 0.0023 35.7 8.2 28 123-150 279-306 (639)
160 cd02931 ER_like_FMN Enoate red 38.6 1.3E+02 0.0029 32.4 8.5 77 126-215 147-227 (382)
161 TIGR00737 nifR3_yhdG putative 37.6 94 0.002 32.5 7.1 71 98-203 61-131 (319)
162 cd06603 GH31_GANC_GANAB_alpha 37.4 91 0.002 33.0 7.0 34 283-316 129-164 (339)
163 PF07476 MAAL_C: Methylasparta 37.4 1.7E+02 0.0036 29.2 7.9 102 285-443 87-190 (248)
164 PLN02447 1,4-alpha-glucan-bran 37.2 2.8E+02 0.006 32.9 11.2 116 129-311 250-390 (758)
165 PRK14705 glycogen branching en 37.2 3.1E+02 0.0068 34.4 12.1 31 283-313 876-906 (1224)
166 PRK10426 alpha-glucosidase; Pr 37.0 1.1E+02 0.0024 35.4 8.0 33 282-314 331-363 (635)
167 TIGR02402 trehalose_TreZ malto 36.9 2.1E+02 0.0045 32.5 10.1 26 287-312 220-245 (542)
168 TIGR02103 pullul_strch alpha-1 36.7 71 0.0015 38.4 6.5 31 123-153 469-499 (898)
169 cd02810 DHOD_DHPD_FMN Dihydroo 36.3 1.2E+02 0.0026 31.0 7.5 83 293-400 113-197 (289)
170 cd06598 GH31_transferase_CtsZ 36.0 1.4E+02 0.0031 31.1 8.1 32 283-315 134-165 (317)
171 cd02911 arch_FMN Archeal FMN-b 35.8 4.1E+02 0.009 26.4 11.0 84 89-214 64-147 (233)
172 COG0296 GlgB 1,4-alpha-glucan 34.9 4.5E+02 0.0098 30.4 12.2 34 280-313 272-305 (628)
173 PF00290 Trp_syntA: Tryptophan 34.6 5.1E+02 0.011 26.4 16.7 74 358-452 131-205 (259)
174 COG1501 Alpha-glucosidases, fa 34.4 5.3E+02 0.011 30.7 13.1 35 283-317 384-418 (772)
175 PRK12568 glycogen branching en 34.4 1.3E+02 0.0028 35.4 8.0 29 122-150 380-408 (730)
176 cd02801 DUS_like_FMN Dihydrour 33.0 1.1E+02 0.0024 30.0 6.4 23 294-316 70-92 (231)
177 COG1902 NemA NADH:flavin oxido 32.8 1.2E+02 0.0027 32.5 7.0 90 127-227 147-238 (363)
178 PF07745 Glyco_hydro_53: Glyco 32.7 5.2E+02 0.011 27.4 11.6 59 290-367 109-167 (332)
179 PRK10605 N-ethylmaleimide redu 30.8 1.1E+02 0.0025 32.7 6.4 79 126-216 156-235 (362)
180 PRK12313 glycogen branching en 30.6 1.1E+02 0.0025 35.3 6.8 28 123-150 282-309 (633)
181 PTZ00170 D-ribulose-5-phosphat 30.4 3.3E+02 0.0071 27.0 9.2 41 359-402 106-148 (228)
182 COG1306 Uncharacterized conser 30.3 2.4E+02 0.0052 29.4 8.1 96 294-405 199-300 (400)
183 TIGR01370 cysRS possible cyste 29.9 1.6E+02 0.0034 31.0 7.0 95 285-400 142-236 (315)
184 PRK10785 maltodextrin glucosid 29.8 9E+02 0.02 27.8 14.3 32 282-313 301-337 (598)
185 cd02929 TMADH_HD_FMN Trimethyl 29.6 2.6E+02 0.0056 30.0 8.9 101 289-400 149-259 (370)
186 PF01055 Glyco_hydro_31: Glyco 29.5 1.8E+02 0.0038 31.9 7.8 34 283-316 149-182 (441)
187 PRK05402 glycogen branching en 28.9 1.5E+02 0.0033 35.0 7.5 29 122-150 376-404 (726)
188 cd06600 GH31_MGAM-like This fa 28.7 2.2E+02 0.0048 29.8 8.1 34 122-155 129-162 (317)
189 PF08869 XisI: XisI protein; 28.7 33 0.00072 30.2 1.5 26 433-458 78-104 (111)
190 cd04722 TIM_phosphate_binding 28.5 4.6E+02 0.01 24.0 10.1 49 136-217 77-125 (200)
191 PRK14706 glycogen branching en 28.5 6.3E+02 0.014 29.4 12.3 30 283-312 278-307 (639)
192 PF02449 Glyco_hydro_42: Beta- 28.4 7.4E+02 0.016 26.3 12.6 53 349-403 208-262 (374)
193 COG0167 PyrD Dihydroorotate de 28.3 7.2E+02 0.016 26.1 11.5 79 85-203 80-161 (310)
194 TIGR03849 arch_ComA phosphosul 28.2 1.6E+02 0.0036 29.5 6.5 52 84-150 40-91 (237)
195 COG5309 Exo-beta-1,3-glucanase 28.0 6.8E+02 0.015 25.8 11.1 131 183-402 146-283 (305)
196 cd02931 ER_like_FMN Enoate red 28.0 2.7E+02 0.0058 30.0 8.7 76 288-376 148-227 (382)
197 cd04740 DHOD_1B_like Dihydroor 27.9 5.8E+02 0.013 26.1 11.0 59 295-377 106-164 (296)
198 PF14639 YqgF: Holliday-juncti 27.7 3E+02 0.0065 25.5 7.8 42 93-152 59-104 (150)
199 cd04747 OYE_like_5_FMN Old yel 27.3 4.2E+02 0.0092 28.4 10.0 25 289-314 143-167 (361)
200 TIGR03852 sucrose_gtfA sucrose 27.2 1.5E+02 0.0033 32.9 6.7 60 123-210 163-228 (470)
201 TIGR02104 pulA_typeI pullulana 27.1 1.3E+02 0.0029 34.6 6.5 30 123-152 292-321 (605)
202 cd02932 OYE_YqiM_FMN Old yello 26.6 3.9E+02 0.0085 28.1 9.6 25 289-314 153-177 (336)
203 PRK08255 salicylyl-CoA 5-hydro 25.6 3.6E+02 0.0078 32.0 9.9 24 289-313 550-573 (765)
204 cd02933 OYE_like_FMN Old yello 25.5 3.4E+02 0.0074 28.7 8.8 25 289-314 151-175 (338)
205 cd06522 GH25_AtlA-like AtlA is 25.4 3.3E+02 0.0071 26.1 8.0 22 135-156 79-103 (192)
206 PF01487 DHquinase_I: Type I 3 25.3 6.4E+02 0.014 24.6 14.8 57 85-152 41-97 (224)
207 PF01207 Dus: Dihydrouridine s 25.2 97 0.0021 32.4 4.6 82 94-213 48-129 (309)
208 cd06589 GH31 The enzymes of gl 25.2 3E+02 0.0065 27.8 8.1 50 89-157 71-120 (265)
209 PLN02960 alpha-amylase 24.8 2.2E+02 0.0047 34.2 7.6 29 122-150 528-556 (897)
210 PRK05474 xylose isomerase; Pro 24.8 9.6E+02 0.021 26.4 15.5 66 124-212 72-138 (437)
211 PRK10605 N-ethylmaleimide redu 24.5 4.3E+02 0.0094 28.2 9.5 97 289-401 158-271 (362)
212 TIGR02082 metH 5-methyltetrahy 24.4 8.1E+02 0.017 30.8 12.7 156 103-313 343-509 (1178)
213 PLN02960 alpha-amylase 24.4 8.7E+02 0.019 29.4 12.4 31 282-312 527-557 (897)
214 COG1908 FrhD Coenzyme F420-red 24.2 1.3E+02 0.0028 27.0 4.3 45 132-205 80-124 (132)
215 PLN02763 hydrolase, hydrolyzin 24.2 2.3E+02 0.0051 34.5 7.9 33 283-316 306-338 (978)
216 PRK13840 sucrose phosphorylase 24.1 2.2E+02 0.0048 31.9 7.3 28 122-150 166-193 (495)
217 PLN03244 alpha-amylase; Provis 24.1 2.4E+02 0.0053 33.5 7.7 66 83-150 439-531 (872)
218 PRK08005 epimerase; Validated 23.7 2E+02 0.0044 28.3 6.2 67 295-402 72-138 (210)
219 COG0042 tRNA-dihydrouridine sy 23.1 1.8E+02 0.0039 30.6 6.1 63 131-212 80-142 (323)
220 PF05990 DUF900: Alpha/beta hy 23.0 4.5E+02 0.0097 26.1 8.7 85 89-203 7-91 (233)
221 COG4724 Endo-beta-N-acetylgluc 23.0 1.4E+02 0.003 32.1 5.1 86 89-202 131-219 (553)
222 PLN02411 12-oxophytodienoate r 22.9 2.4E+02 0.0052 30.5 7.2 76 289-376 164-240 (391)
223 PF05913 DUF871: Bacterial pro 22.8 1.8E+02 0.0039 31.2 6.0 56 132-217 16-71 (357)
224 cd02803 OYE_like_FMN_family Ol 22.8 5.6E+02 0.012 26.5 9.9 102 289-402 140-251 (327)
225 PF14885 GHL15: Hypothetical g 22.4 77 0.0017 26.1 2.5 27 286-312 49-75 (79)
226 PF01207 Dus: Dihydrouridine s 22.1 92 0.002 32.5 3.7 90 291-400 66-159 (309)
227 cd06595 GH31_xylosidase_XylS-l 21.9 3.5E+02 0.0077 27.8 8.0 34 122-155 128-161 (292)
228 KOG0183|consensus 21.5 5.2E+02 0.011 25.5 8.2 91 49-141 64-175 (249)
229 cd07321 Extradiol_Dioxygenase_ 21.5 1.1E+02 0.0023 25.1 3.1 30 116-145 7-36 (77)
230 PF04914 DltD_C: DltD C-termin 21.4 2.8E+02 0.0061 25.1 6.2 57 87-149 38-95 (130)
231 PF07476 MAAL_C: Methylasparta 21.4 4.7E+02 0.01 26.2 8.0 86 124-244 87-174 (248)
232 PRK09856 fructoselysine 3-epim 21.3 8.2E+02 0.018 24.3 11.2 98 85-211 47-147 (275)
233 PRK07259 dihydroorotate dehydr 20.8 8.6E+02 0.019 24.9 10.7 58 295-376 108-166 (301)
234 COG2342 Predicted extracellula 20.6 2.2E+02 0.0048 29.3 5.8 61 131-209 127-187 (300)
235 PF07745 Glyco_hydro_53: Glyco 20.6 8E+02 0.017 26.0 10.3 196 98-313 70-295 (332)
236 PF12876 Cellulase-like: Sugar 20.3 1.7E+02 0.0036 24.2 4.2 50 187-240 36-88 (88)
No 1
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.1e-77 Score=646.32 Aligned_cols=409 Identities=48% Similarity=0.871 Sum_probs=333.1
Q ss_pred CceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCc
Q psy11626 21 DQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNL 100 (596)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~l 100 (596)
.++|||++|++||.+.++|.|++||+.+++||||+|||+.|+++ ++.+...+++.+.. ...++++.+||++||++
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~-~~~~~~~~~~~~~~----~~~~~~~~~lk~~~p~l 75 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDAD-TYKIKSLNEDLDLD----KSHYRAITSLKRKYPHL 75 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCC-CCEEEecCcccchh----hhHHHHHHHHHhhCCCC
Confidence 36899999999999999999999998777899999999999943 56777767666654 57899999999999999
Q ss_pred eEEEEEcCCCCCCC---hhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhccccccc
Q psy11626 101 NIMLSVGGFEDDDD---KEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 177 (596)
Q Consensus 101 kvllsiGG~~~~~~---s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
|||||||||+.... +..|+.++++++.|++||++|++||++|+|||||||||||...+....+++|+.|+.||+.+.
T Consensus 76 KvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~ 155 (413)
T cd02873 76 KVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFT 155 (413)
T ss_pred eEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccc
Confidence 99999999986321 467999999999999999999999999999999999999987654444567777877766554
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCccccccccccc
Q psy11626 178 GPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMI 257 (596)
Q Consensus 178 g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~ 257 (596)
|+..
T Consensus 156 g~~~---------------------------------------------------------------------------- 159 (413)
T cd02873 156 GDSV---------------------------------------------------------------------------- 159 (413)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 4310
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccc
Q psy11626 258 TLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 337 (596)
Q Consensus 258 ~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~ 337 (596)
T Consensus 160 -------------------------------------------------------------------------------- 159 (413)
T cd02873 160 -------------------------------------------------------------------------------- 159 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCC
Q psy11626 338 TGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSA 417 (596)
Q Consensus 338 ~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~a 417 (596)
.++..++|+++|+.||+|||++|++.+++|+++|++.......||+++|+++|||||||+||+|++|..+..++|+|
T Consensus 160 ---~~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~a 236 (413)
T cd02873 160 ---VDEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNSTWYFDVPAIANNVDFVNLATFDFLTPERNPEEADYTA 236 (413)
T ss_pred ---cCCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchhccccCHHHHhhcCCEEEEEEecccCCCCCCCccCcCC
Confidence 01112446666666666666666666667777666543333468999999999999999999999998877899999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCC-cccCCCCCCCCccCCCCcchHHHH
Q psy11626 418 PLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPP-LVADGAGEKGTITKEEGLLSYAEI 496 (596)
Q Consensus 418 PL~~~~~~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~-~~~~g~~~~g~~t~~~g~l~Y~~i 496 (596)
||+......+..||+.+|++|+++|+|++|||||||+|||.|++.+.....|.+. +.+.|++.+|+++.++|.++|.||
T Consensus 237 pL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei 316 (413)
T cd02873 237 PIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEI 316 (413)
T ss_pred ccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHH
Confidence 9997654445679999999999999999999999999999999987654445443 346788999999999999999999
Q ss_pred hhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCCCC
Q psy11626 497 CPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576 (596)
Q Consensus 497 ~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD~ 576 (596)
|..+....+..|....|+.+||+..+.++|+|...+++ ..+++||+|||++|++.|++||+++||||+|+|++++||+
T Consensus 317 ~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~--~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~ 394 (413)
T cd02873 317 CSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADEN--GEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDF 394 (413)
T ss_pred HHhhccCccccccccceeEeecccccccceEEeccccC--CCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 99876543222333346778898765568998754321 2347899999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHhhc
Q psy11626 577 RGMCNSNKFPILRAARTQF 595 (596)
Q Consensus 577 ~g~c~~~~~pLl~ai~~~l 595 (596)
+|.|+.++||||+||+..|
T Consensus 395 ~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 395 RGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred CCCcCCCCChHHHHHHhhC
Confidence 9999878999999999875
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1e-68 Score=570.68 Aligned_cols=356 Identities=35% Similarity=0.647 Sum_probs=303.1
Q ss_pred ceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCce
Q psy11626 22 QYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLN 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lk 101 (596)
++|||++|++||.+.+.|.|++|| .++||||+|+|+.++.+|++. ..+++.|.. ...++++.+||++||++|
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~--~~~~Thv~y~f~~i~~~g~~~--~~~~~~d~~----~~~~~~~~~lk~~~p~lk 72 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENID--PFLCTHIIYAFAGLNPDGNII--ILDEWNDID----LGLYERFNALKEKNPNLK 72 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCC--cccCCEEEEeeEEECCCCCEE--ecCchhhhh----hhHHHHHHHHHhhCCCce
Confidence 479999999999999999999999 578999999999999777544 445555544 788999999999999999
Q ss_pred EEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCC
Q psy11626 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 181 (596)
Q Consensus 102 vllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 181 (596)
||+|||||..+ +..|+.++++++.|++||++|++++++|||||||||||+|...+
T Consensus 73 vlisiGG~~~~--~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~----------------------- 127 (362)
T cd02872 73 TLLAIGGWNFG--SAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRG----------------------- 127 (362)
T ss_pred EEEEEcCCCCC--cchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCC-----------------------
Confidence 99999999874 56899999999999999999999999999999999999997642
Q ss_pred CCCccchHHHHHHHHHHHHHhhhc--CcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCccccccccccccc
Q psy11626 182 DNPTLHREHFTLLIREMKAAFRAE--NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITL 259 (596)
Q Consensus 182 ~~~~~d~~~~~~ll~~Lr~~l~~~--~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~ 259 (596)
.+++|+++|+.||++||++|++. +++||+++|+...
T Consensus 128 -~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av~~~~~----------------------------------------- 165 (362)
T cd02872 128 -GPPEDKENFVTLLKELREAFEPEAPRLLLTAAVSAGKE----------------------------------------- 165 (362)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEecCChH-----------------------------------------
Confidence 11247888888888888888876 6777777653210
Q ss_pred ccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccC
Q psy11626 260 HAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTG 339 (596)
Q Consensus 260 ~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g 339 (596)
T Consensus 166 -------------------------------------------------------------------------------- 165 (362)
T cd02872 166 -------------------------------------------------------------------------------- 165 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCC
Q psy11626 340 PKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPL 419 (596)
Q Consensus 340 ~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL 419 (596)
.....||+++|.+++|||+||+||+|++|. ..++|+|||
T Consensus 166 ---------------------------------------~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~--~~~g~~spl 204 (362)
T cd02872 166 ---------------------------------------TIDAAYDIPEISKYLDFINVMTYDFHGSWE--GVTGHNSPL 204 (362)
T ss_pred ---------------------------------------HHhhcCCHHHHhhhcceEEEecccCCCCCC--CCCCCCCCC
Confidence 012358999999999999999999999997 468999999
Q ss_pred CCCCCC---CCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCC-CCCCCCcccCCCCCCCCccCCCCcchHHH
Q psy11626 420 HFVYGR---VPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSH-KSGIPPLVADGAGEKGTITKEEGLLSYAE 495 (596)
Q Consensus 420 ~~~~~~---~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~-~~g~~~~~~~g~~~~g~~t~~~g~l~Y~~ 495 (596)
++.+.. ....+++.+|++|++.|+|++||+||||+|||+|++.+..+ ..|.| ..|++.+|+++.++|.++|.|
T Consensus 205 ~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~---~~g~~~~g~~~~~~g~~~y~e 281 (362)
T cd02872 205 YAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLVLGIPTYGRSFTLASPSNTGVGAP---ASGPGTAGPYTREAGFLAYYE 281 (362)
T ss_pred CCCCCCccccccccHHHHHHHHHHcCCCHHHeEeccccccceeeecCCccCCCCCc---cCCCCCCCCCcCCCccchHHH
Confidence 986522 24578999999999999999999999999999999987653 23444 577888888999999999999
Q ss_pred HhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCCC
Q psy11626 496 ICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDD 575 (596)
Q Consensus 496 i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD 575 (596)
||+.+ .. +++..||+.. .++|.|+. ++||+|||++|++.|++||+++||||+++|+|++||
T Consensus 282 i~~~~-~~--------~~~~~~D~~~-~~~y~~~~---------~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD 342 (362)
T cd02872 282 ICEFL-KS--------GWTVVWDDEQ-KVPYAYKG---------NQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDD 342 (362)
T ss_pred HHHhh-cC--------CcEEEEeCCc-ceeEEEEC---------CEEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCc
Confidence 99987 33 2578899865 47898763 689999999999999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHhhc
Q psy11626 576 FRGMCNSNKFPILRAARTQF 595 (596)
Q Consensus 576 ~~g~c~~~~~pLl~ai~~~l 595 (596)
++|.||.++|||++||++.|
T Consensus 343 ~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 343 FRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred CCCccCCCCCcHHHHHHHhC
Confidence 99999977999999999876
No 3
>KOG2806|consensus
Probab=100.00 E-value=3.3e-61 Score=520.02 Aligned_cols=367 Identities=28% Similarity=0.465 Sum_probs=298.2
Q ss_pred cccccCCceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHh
Q psy11626 15 EDHLSKDQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94 (596)
Q Consensus 15 ~~~~s~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk 94 (596)
+.+.++...|+++.|.+|+.+.....+.+++ +++|||++|||+.++.+|...+.. +.. . .........+|
T Consensus 47 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~--~~~~TH~vfafa~~~~~~~~~~~~-~~~---~----~~f~~~~~~~k 116 (432)
T KOG2806|consen 47 EEFTAQNTVCEKSIVGYYPSRIGPETLEDQD--PLKCTHLVYAFAKMKRVGYVVFCG-ART---M----NRFSSYNQTAK 116 (432)
T ss_pred ccccCccccccceeEEEeCCCCCCCCccccC--hhhcCcceEEEeeecccccEEecc-chh---h----hhhHHHHHHHH
Confidence 4445578889999999999877678888888 578999999999999777655433 221 0 34556666789
Q ss_pred hhCCCceEEEEEcCC-CCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCC-cCccccccccccchhcc
Q psy11626 95 TFQPNLNIMLSVGGF-EDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV-VTEKHESYTLGSIWHKI 172 (596)
Q Consensus 95 ~~~p~lkvllsiGG~-~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~-~~~~~~~~~~~~~~~~~ 172 (596)
++||+||+|+||||| .. +..|+.++++++.|++||+||++||++|+|||||||||||. ..
T Consensus 117 ~~n~~vK~llSIGG~~~n---s~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~--------------- 178 (432)
T KOG2806|consen 117 SSNPTVKVMISIGGSHGN---SGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTP--------------- 178 (432)
T ss_pred hhCCCceEEEEecCCCCC---ccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCch---------------
Confidence 999999999999999 55 78999999999999999999999999999999999999995 21
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccc
Q psy11626 173 KKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQ 252 (596)
Q Consensus 173 ~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~ 252 (596)
.|+.+|..|++|||++|.++....
T Consensus 179 -------------~d~~~~~~~i~elr~~~~~~~~~~------------------------------------------- 202 (432)
T KOG2806|consen 179 -------------SDQLEFSRFIQELRSAFARETLKS------------------------------------------- 202 (432)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHhhcc-------------------------------------------
Confidence 378999999999999998652100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceec
Q psy11626 253 HLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHK 332 (596)
Q Consensus 253 ~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~ 332 (596)
T Consensus 203 -------------------------------------------------------------------------------- 202 (432)
T KOG2806|consen 203 -------------------------------------------------------------------------------- 202 (432)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCc-CcccccChhhHhhhccEeEEecccCCCCCCCCC
Q psy11626 333 IKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHV-NYTVYFDVPSITQHLDMITLHAYDFRTPQRNPK 411 (596)
Q Consensus 333 ~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~-~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~ 411 (596)
.+...+++++.+++.. ....+||+++|.+++||||||+|||||+|+++.
T Consensus 203 ------------------------------~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~ 252 (432)
T KOG2806|consen 203 ------------------------------PDTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPC 252 (432)
T ss_pred ------------------------------CCccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCC
Confidence 0000122222222222 355689999999999999999999999999888
Q ss_pred CCCCCCCCCCCCC-CCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCC-ccCCCC
Q psy11626 412 EADYSAPLHFVYG-RVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGT-ITKEEG 489 (596)
Q Consensus 412 ~~g~~aPL~~~~~-~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~-~t~~~g 489 (596)
.+||+|||+.... ..+..||+.+|++|++.|.||+||+||||+|||.|++.+.+...+. ...+++.+++ .+..+|
T Consensus 253 ~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~gip~yg~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~g 329 (432)
T KOG2806|consen 253 FTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLALPFYGRSWQLLEDSRSSAA---PPFGQAAPVSMRSKGGG 329 (432)
T ss_pred cCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEEEecceehhhhcCCcCCCCC---ccCCCcccCccccccCc
Confidence 8999999998653 4567899999999999999999999999999999999986654222 2455666665 566889
Q ss_pred cchHHHHhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Q psy11626 490 LLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAII 569 (596)
Q Consensus 490 ~l~Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W 569 (596)
.++|.|||....+.+ ...||+.++ .+|+|+. + +++||+|||++|+++|++||++++|||||+|
T Consensus 330 ~ls~~ei~~~~~~~~---------~~~~d~~~~-~~Y~~~~-~------~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW 392 (432)
T KOG2806|consen 330 YMSYPEICERKINTG---------VTHWDEETQ-TPYLYNI-P------YDQWVTYENERSIHIKADYAKDEGLGGVAIW 392 (432)
T ss_pred eeeHHHHHHHhcccC---------CceecCCce-eeeEEec-C------CCeEEecCCHHHHHHHHHHHHhcCCceEEEE
Confidence 999999999766543 567898776 5999985 2 3899999999999999999999999999999
Q ss_pred eCCCCCCCCC-CC-CCCchHHHHHHhhc
Q psy11626 570 DLSLDDFRGM-CN-SNKFPILRAARTQF 595 (596)
Q Consensus 570 ~l~~DD~~g~-c~-~~~~pLl~ai~~~l 595 (596)
++++||++|. |+ ..++|++.++.+.+
T Consensus 393 ~vd~DD~~~~~~~~~~~~~~~~~~~~~~ 420 (432)
T KOG2806|consen 393 NIDQDDESGSLLNAALSRPQTCSICLKN 420 (432)
T ss_pred eccCCCCCCccccccccccceeeccccc
Confidence 9999999998 55 37899998887654
No 4
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-61 Score=492.27 Aligned_cols=365 Identities=22% Similarity=0.329 Sum_probs=278.4
Q ss_pred cCCceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCce-----------------EEecCCcccccccc
Q psy11626 19 SKDQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDY-----------------HIKSLDKELDTDKN 81 (596)
Q Consensus 19 s~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~-----------------~~~~~~~~~d~~~~ 81 (596)
...++.||.+|+.|.. ..|.|.+|| ++++|||+|||+.|..+|.. ...-.++|.+.
T Consensus 37 ~~rvvgYY~sWs~~d~--~~y~~~DIp--~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~--- 109 (441)
T COG3325 37 QFKVVGYYTSWSQYDR--QDYFPGDIP--LDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDP--- 109 (441)
T ss_pred CceEEEEecccccCCC--cccccccCC--HHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeecccccc---
Confidence 4667789999999986 589999999 78999999999999977731 11112344432
Q ss_pred chhhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccc
Q psy11626 82 KGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHE 161 (596)
Q Consensus 82 ~~~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~ 161 (596)
.++.+..|..||+++|++|+++|||||+. |..|+.++.+.+.|++|++|+++||++|+|||||||||||+..+.
T Consensus 110 -~~G~~~~L~~lk~~~~d~k~l~SIGGWs~---S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~-- 183 (441)
T COG3325 110 -LKGHFGALFDLKATYPDLKTLISIGGWSD---SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGD-- 183 (441)
T ss_pred -ccchHHHHHHHhhhCCCceEEEeeccccc---CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCC--
Confidence 27899999999999999999999999999 899999999999999999999999999999999999999987642
Q ss_pred ccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccc
Q psy11626 162 SYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 241 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd 241 (596)
.++..+++|.++|+.||++||++|+..+.
T Consensus 184 -----------------~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~---------------------------------- 212 (441)
T COG3325 184 -----------------AGNCGRPKDKANYVLLLQELRKKLDKAGV---------------------------------- 212 (441)
T ss_pred -----------------CCCCCCcccHHHHHHHHHHHHHHHhhccc----------------------------------
Confidence 11125567888899999999888876530
Q ss_pred cccCCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCc
Q psy11626 242 FLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKH 321 (596)
Q Consensus 242 ~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~ 321 (596)
T Consensus 213 -------------------------------------------------------------------------------- 212 (441)
T COG3325 213 -------------------------------------------------------------------------------- 212 (441)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecc
Q psy11626 322 ESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401 (596)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~Y 401 (596)
+ +-+.|+||+|.|+........+..+++++|||||+|||
T Consensus 213 -------------------------e----------------dgr~Y~LTiA~~as~~~l~~~~~~~~~~~vDyiNiMTY 251 (441)
T COG3325 213 -------------------------E----------------DGRHYQLTIAAPASKDKLEGLNHAEIAQYVDYINIMTY 251 (441)
T ss_pred -------------------------c----------------cCceEEEEEecCCchhhhhcccHHHHHHHHhhhheeee
Confidence 0 01248888888888877778899999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCC----CCCCH------HHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCC
Q psy11626 402 DFRTPQRNPKEADYSAPLHFVYGRV----PHQNA------NAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIP 471 (596)
Q Consensus 402 D~~~~~~~~~~~g~~aPL~~~~~~~----~~~sv------~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~ 471 (596)
||||.|.+ .+|||||||..+... ..+.+ ...++.....++||+|||||+|+|||.|...+......++
T Consensus 252 Df~G~Wn~--~~Gh~a~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~ 329 (441)
T COG3325 252 DFHGAWNE--TLGHHAALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCP 329 (441)
T ss_pred eccccccc--ccccccccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCC
Confidence 99999995 799999999754111 11222 2355555567799999999999999999998765531011
Q ss_pred Cc-ccCCC--CCCCCccCCCCcc--hHH---HHhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEE
Q psy11626 472 PL-VADGA--GEKGTITKEEGLL--SYA---EICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWV 543 (596)
Q Consensus 472 ~~-~~~g~--~~~g~~t~~~g~l--~Y~---~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~i 543 (596)
.. ....+ -..|. ..++.+ +|. .+-..... ..++.++||+.. .+||+|+. ++++||
T Consensus 330 ~~~q~~~n~g~~~Gt--w~a~n~~~~~~~~~~l~~n~~~-------~~g~~~~~d~~a-~apyL~n~-------~~~vFi 392 (441)
T COG3325 330 GLYQGLDNSGIPKGT--WEAGNGDKDYGKAYDLDANNAG-------KNGYERYWDDVA-KAPYLYNP-------EKGVFI 392 (441)
T ss_pred CcccccCCCCCCCCc--ccccccCccchhhccccccccC-------CCCeeEeccccc-ccceeecC-------CCCeEE
Confidence 10 00111 12222 322222 221 22221111 245799999864 58999985 458999
Q ss_pred EeCCHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCCCCCchHHHHHHhhc
Q psy11626 544 SFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRGMCNSNKFPILRAARTQF 595 (596)
Q Consensus 544 sydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD~~g~c~~~~~pLl~ai~~~l 595 (596)
||||++|+++|++||++++|||+|+|++++| ...-|++|+++.|
T Consensus 393 SyDd~rSvkaK~eYv~~n~LGG~m~We~sgD--------~n~~llna~~~~l 436 (441)
T COG3325 393 SYDDPRSVKAKAEYVADNNLGGMMFWEISGD--------ENGVLLNAVNEGL 436 (441)
T ss_pred EccCCcchhhHHHHHhhcCccceEEEEecCC--------cchhHHHHhhccc
Confidence 9999999999999999999999999999999 1234999998875
No 5
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.1e-59 Score=494.51 Aligned_cols=333 Identities=19% Similarity=0.326 Sum_probs=249.9
Q ss_pred ceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCce
Q psy11626 22 QYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLN 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lk 101 (596)
.+|||++|+++|++ ..+.|++|| .++||||+|+|+.++.+|++.+. +. .+.+.++.++| ++|
T Consensus 2 ~v~Y~~~w~~~r~~-~~~~~~~i~--~~~~THi~yaf~~~~~~g~l~~~--~~---------~~~~~~~~~~k----~lk 63 (345)
T cd02878 2 NIAYFEAYNLDRPC-LNMDVTQID--TSKYTHIHFAFANITSDFSVDVS--SV---------QEQFSDFKKLK----GVK 63 (345)
T ss_pred EEEEEChhhcCCCC-CCCCHhHCC--cccCCEEEEEeEeecCCCeEeec--cc---------HHHHHHHHhhc----CcE
Confidence 57999999999986 489999999 67899999999999977765542 11 45667777665 399
Q ss_pred EEEEEcCCCCCCC---hhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccC
Q psy11626 102 IMLSVGGFEDDDD---KEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTG 178 (596)
Q Consensus 102 vllsiGG~~~~~~---s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g 178 (596)
||||||||..+.. ...|+.++ ++++|++||++|++++++|||||||||||||...+.. |
T Consensus 64 vllsiGG~~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~-----------------~ 125 (345)
T cd02878 64 KILSFGGWDFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIP-----------------G 125 (345)
T ss_pred EEEEEeCCCCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCC-----------------C
Confidence 9999999987321 02588888 9999999999999999999999999999999764210 0
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccc
Q psy11626 179 PKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMIT 258 (596)
Q Consensus 179 ~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~ 258 (596)
.+ ...++|+++|+.||++||++|+
T Consensus 126 ~~-~~~~~d~~n~~~ll~elr~~l~------------------------------------------------------- 149 (345)
T cd02878 126 IP-AGDPDDGKNYLEFLKLLKSKLP------------------------------------------------------- 149 (345)
T ss_pred CC-CCChHHHHHHHHHHHHHHHHhC-------------------------------------------------------
Confidence 00 0012345555555555555554
Q ss_pred cccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceeccccccc
Q psy11626 259 LHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 338 (596)
Q Consensus 259 ~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~ 338 (596)
T Consensus 150 -------------------------------------------------------------------------------- 149 (345)
T cd02878 150 -------------------------------------------------------------------------------- 149 (345)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCC
Q psy11626 339 GPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAP 418 (596)
Q Consensus 339 g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aP 418 (596)
+ +++||+++++.......||+++|.+++|||+||+||+||+|+.+ +.+++|
T Consensus 150 --------------------------~-~~~ls~a~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~--~~~~~p 200 (345)
T cd02878 150 --------------------------S-GKSLSIAAPASYWYLKGFPIKDMAKYVDYIVYMTYDLHGQWDYG--NKWASP 200 (345)
T ss_pred --------------------------c-CcEEEEEcCCChhhhcCCcHHHHHhhCcEEEEEeecccCCcCcc--CCcCCC
Confidence 3 34555555544333456899999999999999999999999853 456666
Q ss_pred CCCCCC----CCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCC-CCCCCcccCCCC---CCCCccCCCCc
Q psy11626 419 LHFVYG----RVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHK-SGIPPLVADGAG---EKGTITKEEGL 490 (596)
Q Consensus 419 L~~~~~----~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~-~g~~~~~~~g~~---~~g~~t~~~g~ 490 (596)
...... .....+++.+|++|++.|+|++|||||||+|||.|++.++.+. .+.| +.|++ .+|+++...|.
T Consensus 201 ~~p~~~~~~~~~~~~~~~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p---~~g~~~~~~~g~~~~~~g~ 277 (345)
T cd02878 201 GCPAGNCLRSHVNKTETLDALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCT---FTGPGSGAEAGRCTCTAGY 277 (345)
T ss_pred CCCcccccccCCCchhHHHHHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCc---ccCCCCCCCCCCCCCchhh
Confidence 332111 1122358899999999999999999999999999999886653 3444 45554 45677788888
Q ss_pred chHHHHhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEe
Q psy11626 491 LSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIID 570 (596)
Q Consensus 491 l~Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~ 570 (596)
+.|.+||..+.... .++.+||+... ++|.... ..+||+|||++|++.|++||+++||||+|+|+
T Consensus 278 ~~~~e~~~~~~~~~-------~~~~~~d~~~~-~~y~~~~--------~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ 341 (345)
T cd02878 278 GAISEIEIIDISKS-------KNKRWYDTDSD-SDILVYD--------DDQWVAYMSPATKAARIEWYKGLNFGGTSDWA 341 (345)
T ss_pred hhHHHHHHHHhccC-------CCcEEEecCCC-ccEEEEc--------CCEEEEcCCHHHHHHHHHHHHhCCCceEEEee
Confidence 88999998654321 25788998655 5665332 15899999999999999999999999999999
Q ss_pred CCCC
Q psy11626 571 LSLD 574 (596)
Q Consensus 571 l~~D 574 (596)
|++|
T Consensus 342 ld~~ 345 (345)
T cd02878 342 VDLQ 345 (345)
T ss_pred ccCC
Confidence 9987
No 6
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=5.8e-58 Score=482.85 Aligned_cols=326 Identities=35% Similarity=0.608 Sum_probs=273.0
Q ss_pred ceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCce
Q psy11626 22 QYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLN 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lk 101 (596)
+.|||++|+.++ ..|.+++|| +++||||+|+|+.++++|++.+. ++..+ ...+.++.+||+++|++|
T Consensus 2 ~~~Y~~~w~~~~---~~~~~~~~~--~~~~thv~~~~~~~~~~g~~~~~--~~~~~------~~~~~~~~~l~~~~~~~k 68 (334)
T smart00636 2 VVGYFTNWGVYG---RNFPVDDIP--ASKLTHIIYAFANIDPDGTVTIG--DEWAD------IGNFGQLKALKKKNPGLK 68 (334)
T ss_pred EEEEECchhccC---CCCChhHCC--cccCcEEEEeeeeeCCCCCEeeC--Ccchh------hhhHHHHHHHHHhCCCCE
Confidence 679999998665 469999999 67899999999999987776544 33322 146778999999999999
Q ss_pred EEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCC
Q psy11626 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 181 (596)
Q Consensus 102 vllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 181 (596)
||+|||||.. +..|+.++.+++.|++|+++|++++++|||||||||||+|...+
T Consensus 69 vl~svgg~~~---s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~----------------------- 122 (334)
T smart00636 69 VLLSIGGWTE---SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARG----------------------- 122 (334)
T ss_pred EEEEEeCCCC---CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCc-----------------------
Confidence 9999999987 68999999999999999999999999999999999999997531
Q ss_pred CCCccchHHHHHHHHHHHHHhhhc-----CcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccc
Q psy11626 182 DNPTLHREHFTLLIREMKAAFRAE-----NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDM 256 (596)
Q Consensus 182 ~~~~~d~~~~~~ll~~Lr~~l~~~-----~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~ 256 (596)
.|+++|+.||++||++|++. +++||+++++....
T Consensus 123 ----~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v~~~~~~------------------------------------- 161 (334)
T smart00636 123 ----DDRENYTALLKELREALDKEGAEGKGYLLTIAVPAGPDK------------------------------------- 161 (334)
T ss_pred ----cHHHHHHHHHHHHHHHHHHhcccCCceEEEEEecCChHH-------------------------------------
Confidence 26789999999999999863 67777776543210
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceeccccc
Q psy11626 257 ITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKT 336 (596)
Q Consensus 257 ~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~ 336 (596)
T Consensus 162 -------------------------------------------------------------------------------- 161 (334)
T smart00636 162 -------------------------------------------------------------------------------- 161 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccC-hhhHhhhccEeEEecccCCCCCCCCCCCCC
Q psy11626 337 VTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFD-VPSITQHLDMITLHAYDFRTPQRNPKEADY 415 (596)
Q Consensus 337 ~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d-~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~ 415 (596)
....++ +++|.+++|||+||+||+|++|+. .+||
T Consensus 162 -------------------------------------------~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~--~~g~ 196 (334)
T smart00636 162 -------------------------------------------IDKGYGDLPAIAKYLDFINLMTYDFHGAWSN--PTGH 196 (334)
T ss_pred -------------------------------------------HHhhhhhHHHHHhhCcEEEEeeeccCCCCCC--CCCC
Confidence 011356 589999999999999999999985 6899
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCC-CCCCCcccCCCCCCCCccCCCCcchHH
Q psy11626 416 SAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHK-SGIPPLVADGAGEKGTITKEEGLLSYA 494 (596)
Q Consensus 416 ~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~-~g~~~~~~~g~~~~g~~t~~~g~l~Y~ 494 (596)
+|||++........+++.+|++|++.|+|++|||||||+||+.|++.+..+. .|+| +.|++.+|+++.++|.++|.
T Consensus 197 ~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YG~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~y~ 273 (334)
T smart00636 197 NAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGIPFYGRGWTLVDGSNNGPGAP---FTGPATGGPGTWEGGVVDYR 273 (334)
T ss_pred CCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEeeccccCccccCCCCcCCCCCc---ccCCCCCCCCCCcccchhHH
Confidence 9999986533346789999999999999999999999999999999876542 2444 67888888889999999999
Q ss_pred HHhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCC
Q psy11626 495 EICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574 (596)
Q Consensus 495 ~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~D 574 (596)
+||+.+ + +...||+.+ .++|.|.+ .+++||+|||++|++.|++||+++||||||+|+|++|
T Consensus 274 ei~~~~---~--------~~~~~d~~~-~~~y~~~~-------~~~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 274 EICKLL---G--------ATVVWDDTA-KAPYAYNP-------GTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHhhc---C--------cEEEEcCCC-ceeEEEEC-------CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999875 1 377889874 57999874 1268999999999999999999999999999999987
No 7
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=8.6e-58 Score=473.08 Aligned_cols=287 Identities=29% Similarity=0.510 Sum_probs=233.3
Q ss_pred CceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHH-HHhhhCCC
Q psy11626 21 DQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQIT-ALKTFQPN 99 (596)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~-~lk~~~p~ 99 (596)
...|||.+|+ ++|.|++|| .++||||+|||+.++.++ +.+...+.. ...+..+. .+|+++|+
T Consensus 4 ~~~~Y~~~w~------~~~~~~~i~--~~~~THi~yaf~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~k~~~~~ 66 (299)
T cd02879 4 VKGGYWPAWS------EEFPPSNID--SSLFTHLFYAFADLDPST-YEVVISPSD--------ESEFSTFTETVKRKNPS 66 (299)
T ss_pred EEEEEECCCC------CCCChhHCC--cccCCEEEEEEEEecCCC-CEEeecccc--------HHHHHHHHHHHHHhCCC
Confidence 3568898887 579999999 578999999999999544 344332211 34455554 68899999
Q ss_pred ceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCC
Q psy11626 100 LNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGP 179 (596)
Q Consensus 100 lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~ 179 (596)
+|||||||||+.+ +..|+.++++++.|++||++|++++++|||||||||||+|...
T Consensus 67 lkvlisiGG~~~~--s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~---------------------- 122 (299)
T cd02879 67 VKTLLSIGGGGSD--SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQ---------------------- 122 (299)
T ss_pred CeEEEEEeCCCCC--CchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCCh----------------------
Confidence 9999999999874 5799999999999999999999999999999999999999643
Q ss_pred CCCCCccchHHHHHHHHHHHHHhhh-------cCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccc
Q psy11626 180 KDDNPTLHREHFTLLIREMKAAFRA-------ENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQ 252 (596)
Q Consensus 180 ~~~~~~~d~~~~~~ll~~Lr~~l~~-------~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~ 252 (596)
+|+++|+.||++||++|++ .+++||+++++.....
T Consensus 123 ------~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av~~~~~~~-------------------------------- 164 (299)
T cd02879 123 ------VEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPILF-------------------------------- 164 (299)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeecccchhhc--------------------------------
Confidence 3789999999999999984 3566666654321100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceec
Q psy11626 253 HLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHK 332 (596)
Q Consensus 253 ~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~ 332 (596)
T Consensus 165 -------------------------------------------------------------------------------- 164 (299)
T cd02879 165 -------------------------------------------------------------------------------- 164 (299)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCC
Q psy11626 333 IKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKE 412 (596)
Q Consensus 333 ~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~ 412 (596)
.......||+++|.++||||+||+||+||+|... .
T Consensus 165 --------------------------------------------~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~-~ 199 (299)
T cd02879 165 --------------------------------------------LSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESN-T 199 (299)
T ss_pred --------------------------------------------cccccccCCHHHHHhhCCEEEEEeecccCCCCCC-C
Confidence 0001235788999999999999999999999864 5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcch
Q psy11626 413 ADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLS 492 (596)
Q Consensus 413 ~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~ 492 (596)
++|+|||+..+ ...+++.+|++|++.|+|++|||||||+|||.|++
T Consensus 200 ~~~~a~l~~~~---~~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr~~~~------------------------------- 245 (299)
T cd02879 200 TGPAAALYDPN---SNVSTDYGIKSWIKAGVPAKKLVLGLPLYGRAWTL------------------------------- 245 (299)
T ss_pred CCCCCcCCCCC---CCCCHHHHHHHHHHcCCCHHHEEEEeccccccccc-------------------------------
Confidence 78999998642 45789999999999999999999999999999974
Q ss_pred HHHHhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCC
Q psy11626 493 YAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572 (596)
Q Consensus 493 Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~ 572 (596)
||+. ..++|.+.. ++||+|||++|++.|++||+++||||+|+|+|+
T Consensus 246 ------------------------~D~~-~~~~y~~~~---------~~wi~ydd~~Si~~K~~~a~~~~lgGv~~W~l~ 291 (299)
T cd02879 246 ------------------------YDTT-TVSSYVYAG---------TTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVG 291 (299)
T ss_pred ------------------------cCCC-cceEEEEEC---------CEEEEeCCHHHHHHHHHHHHhCCCCeEEEEEee
Confidence 1222 235787763 689999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy11626 573 LDDFRGM 579 (596)
Q Consensus 573 ~DD~~g~ 579 (596)
+||..+.
T Consensus 292 ~Dd~~~~ 298 (299)
T cd02879 292 YDDNNWL 298 (299)
T ss_pred cCCcccc
Confidence 9998653
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=5.2e-58 Score=480.29 Aligned_cols=309 Identities=28% Similarity=0.464 Sum_probs=247.5
Q ss_pred ceeEeeeeeeecCCCCCCCCC-CcCCCCCcccEEEEEEEEecCCCceEEecCCcccc-----------ccccchhhhHHH
Q psy11626 22 QYHIHSNLYFISSGTAKVGPE-ELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELD-----------TDKNKGKELFKQ 89 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~-~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d-----------~~~~~~~~~~~~ 89 (596)
++|||++|+.|+.+ +.+. +|| .++||||+|||+.|+++|.... ..+.+.+ ...+...+.+++
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~--~~~~THl~yaf~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIP--ADKLTHINYAFADIDGDGGVVT-SDDEAADEAAQSVDGGADTDDQPLKGNFGQ 74 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCC--hhHCcEEEEEeeeEcCCCCeEc-cChhhhhhccccCCcccccCCccchhHHHH
Confidence 47999999999964 3455 698 5789999999999997775433 2221110 011123678999
Q ss_pred HHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccch
Q psy11626 90 ITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIW 169 (596)
Q Consensus 90 ~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~ 169 (596)
+.+||+++|++|||+|||||+. +..|+.++++++.|++|+++|++|+++|||||||||||||...+.
T Consensus 75 ~~~lk~~~p~lkvl~siGG~~~---s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~---------- 141 (322)
T cd06548 75 LRKLKQKNPHLKILLSIGGWTW---SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGA---------- 141 (322)
T ss_pred HHHHHHhCCCCEEEEEEeCCCC---CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCC----------
Confidence 9999999999999999999987 689999999999999999999999999999999999999976431
Q ss_pred hcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCccc
Q psy11626 170 HKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPS 249 (596)
Q Consensus 170 ~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~ 249 (596)
.++...++|+++|+.||++||++|++.+..
T Consensus 142 ---------~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~----------------------------------------- 171 (322)
T cd06548 142 ---------PGNVARPEDKENFTLLLKELREALDALGAE----------------------------------------- 171 (322)
T ss_pred ---------CCCCCChhHHHHHHHHHHHHHHHHHHhhhc-----------------------------------------
Confidence 000112346667777777777666543100
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccc
Q psy11626 250 ITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSI 329 (596)
Q Consensus 250 ~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~ 329 (596)
T Consensus 172 -------------------------------------------------------------------------------- 171 (322)
T cd06548 172 -------------------------------------------------------------------------------- 171 (322)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCC
Q psy11626 330 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRN 409 (596)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~ 409 (596)
..++++||+++++.......+++++|.++||||+||+||+|++|+
T Consensus 172 ----------------------------------~~~~~~Ls~av~~~~~~~~~~~~~~l~~~vD~vnlMtYD~~g~w~- 216 (322)
T cd06548 172 ----------------------------------TGRKYLLTIAAPAGPDKLDKLEVAEIAKYLDFINLMTYDFHGAWS- 216 (322)
T ss_pred ----------------------------------cCCceEEEEEccCCHHHHhcCCHHHHhhcCCEEEEEEeeccCCCC-
Confidence 012589999999887666678899999999999999999999998
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCC
Q psy11626 410 PKEADYSAPLHFVYG-RVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEE 488 (596)
Q Consensus 410 ~~~~g~~aPL~~~~~-~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~ 488 (596)
..+||+|||+..+. +....+++.+|++|++.|+|++|||||||+|||.|++
T Consensus 217 -~~~g~~spL~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------- 268 (322)
T cd06548 217 -NTTGHHSNLYASPADPPGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------- 268 (322)
T ss_pred -CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC---------------------------
Confidence 46899999997642 2356799999999999999999999999999999873
Q ss_pred CcchHHHHhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEE
Q psy11626 489 GLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAI 568 (596)
Q Consensus 489 g~l~Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~ 568 (596)
+...||+.+. ++|.|+. ..++||+|||++|++.|++||+++||||+|+
T Consensus 269 ------------------------~~~~~D~~~~-~~y~~~~-------~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~ 316 (322)
T cd06548 269 ------------------------YTRYWDEVAK-APYLYNP-------STKTFISYDDPRSIKAKADYVKDKGLGGVMF 316 (322)
T ss_pred ------------------------cEEEEcCCcc-eeEEEeC-------CCCeEEEeCCHHHHHHHHHHHHhcCCccEEE
Confidence 1456777554 7888863 2378999999999999999999999999999
Q ss_pred EeCCCC
Q psy11626 569 IDLSLD 574 (596)
Q Consensus 569 W~l~~D 574 (596)
|++++|
T Consensus 317 W~l~~D 322 (322)
T cd06548 317 WELSGD 322 (322)
T ss_pred EeccCC
Confidence 999987
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=5.1e-52 Score=438.41 Aligned_cols=341 Identities=33% Similarity=0.572 Sum_probs=265.3
Q ss_pred CCceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecC-CccccccccchhhhHHHHHHHhhhCC
Q psy11626 20 KDQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSL-DKELDTDKNKGKELFKQITALKTFQP 98 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~-~~~~d~~~~~~~~~~~~~~~lk~~~p 98 (596)
+.+.|||.+|..++.+ .|.+++|| +++||||+|+|+.++.++....... ....+ .....++.+.++|+++|
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~--~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 72 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIP--WSKCTHIVYAFAGIDPNGNLNYPWNFDDDND----GDSSGFKNLKELKAKNP 72 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSH--TTTESEEEEEEEEEETTTTEEEGTTTECSST----THHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCC--cccCCEEEEEeeeecCCCceecccccccccC----ccccchhHHHHHHhhcc
Confidence 3578999999887766 68899998 5789999999999998777643100 00011 12677888889999999
Q ss_pred CceEEEEEcCCCCCCChh-hhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhccccccc
Q psy11626 99 NLNIMLSVGGFEDDDDKE-KYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 177 (596)
Q Consensus 99 ~lkvllsiGG~~~~~~s~-~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
++|||+|||||.. +. .|..++.+++.|++|+++|+++|++|||||||||||+|...+.
T Consensus 73 ~~kvllsigg~~~---~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~------------------ 131 (343)
T PF00704_consen 73 GVKVLLSIGGWGM---SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGD------------------ 131 (343)
T ss_dssp T-EEEEEEEETTS---SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSS------------------
T ss_pred CceEEEEeccccc---cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeecccccc------------------
Confidence 9999999999988 55 9999999999999999999999999999999999999976521
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCccccccccccc
Q psy11626 178 GPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMI 257 (596)
Q Consensus 178 g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~ 257 (596)
+.++++|..||++||++|++..
T Consensus 132 -------~~~~~~~~~~l~~L~~~l~~~~--------------------------------------------------- 153 (343)
T PF00704_consen 132 -------PQDKDNYTAFLKELRKALKRAN--------------------------------------------------- 153 (343)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred -------chhhhhhhhhhhhhhhhhcccc---------------------------------------------------
Confidence 1367888888888888887630
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccc
Q psy11626 258 TLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 337 (596)
Q Consensus 258 ~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~ 337 (596)
T Consensus 154 -------------------------------------------------------------------------------- 153 (343)
T PF00704_consen 154 -------------------------------------------------------------------------------- 153 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCC
Q psy11626 338 TGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSA 417 (596)
Q Consensus 338 ~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~a 417 (596)
.+ . +++.||+++|+.......+++++|.+++|||+||+||++++|+. .++|++
T Consensus 154 -----------------------~~-~-~~~~ls~a~p~~~~~~~~~~~~~l~~~vD~v~~m~yD~~~~~~~--~~~~~~ 206 (343)
T PF00704_consen 154 -----------------------RS-G-KGYILSVAVPPSPDYYDKYDYKELAQYVDYVNLMTYDYHGPWSD--VTGPNA 206 (343)
T ss_dssp -----------------------HH-H-STSEEEEEEECSHHHHTTHHHHHHHTTSSEEEEETTSSSSTTSS--BETTSS
T ss_pred -----------------------cc-c-ceeEEeeccccccccccccccccccccccccccccccCCCCccc--cccccc
Confidence 00 0 13455555554444444458999999999999999999999886 789999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcchHHHHh
Q psy11626 418 PLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEIC 497 (596)
Q Consensus 418 PL~~~~~~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~Y~~i~ 497 (596)
||+.........+++.++++|+..|+|++||+||||+||+.|++.+......... .. ..++..+..+|.++|.++|
T Consensus 207 ~l~~~~~~~~~~~~~~~v~~~~~~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~ 282 (343)
T PF00704_consen 207 PLYDSSWDSNYYSVDSAVQYWIKAGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGP--AY--WSPGKGTKNAGILSYYELC 282 (343)
T ss_dssp SSSHTTTSGTSSSHHHHHHHHHHTTSTGGGEEEEEESEEEEEESSSSTTSTTTBB--EE--SEETTTTSBTTEEEHHHHH
T ss_pred ccccCCccCCCceeeeehhhhccccCChhheeecCCcccccceecCCcCCCCCCc--cc--ccccccccCCCccccccch
Confidence 9987643235678999999999999999999999999999999987654321111 00 2345567888999999999
Q ss_pred hhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCC
Q psy11626 498 PQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574 (596)
Q Consensus 498 ~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~D 574 (596)
......+ +...||+. ..++|.+... .++||+|||++|+++|++|++++||||+++|+|++|
T Consensus 283 ~~~~~~~--------~~~~~d~~-~~~~y~~~~~-------~~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 283 ALLKSNG--------YTVQWDDT-AQAPYAYNDD-------KKHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp HHTHHTT--------EEEEEETT-TTEEEEEETT-------TTEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred hhcccCC--------cceEEeec-ccceEEEecC-------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 9875332 46778876 5688988752 379999999999999999999999999999999987
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=2e-50 Score=422.45 Aligned_cols=305 Identities=19% Similarity=0.275 Sum_probs=236.3
Q ss_pred CceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCc
Q psy11626 21 DQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNL 100 (596)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~l 100 (596)
.+.|||++|..+ .+.+.+++ .++||||+|+|+.++++|...... + ..+.+ . ..+.++|+++|++
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~--~~~lthv~~~f~~i~~~g~~~~~~-~-~~~~~----~---~~~~~lk~~~~~l 67 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKF--AAKFTHVSPVWLQIKRKGNKFVIE-G-THDID----K---GWIEEVRKANKNI 67 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHH--hccCCEecceEEEEecCCCeeeee-c-Ccchh----h---HHHHHHHhhCCCc
Confidence 467899988543 47788888 679999999999999766422111 1 11111 1 2456789999999
Q ss_pred eEE--EEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeee-ccCCCcCccccccccccchhccccccc
Q psy11626 101 NIM--LSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLA-WEFPVVTEKHESYTLGSIWHKIKKTVT 177 (596)
Q Consensus 101 kvl--lsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiD-wE~p~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
||| +++|||+. ..|+.++++++.|++||+++++++++||||||||| ||+|...+
T Consensus 68 kvlp~i~~gg~~~----~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~------------------- 124 (318)
T cd02876 68 KILPRVLFEGWSY----QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYG------------------- 124 (318)
T ss_pred EEEeEEEECCCCH----HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccC-------------------
Confidence 999 77899975 47999999999999999999999999999999999 99997542
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCccccccccccc
Q psy11626 178 GPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMI 257 (596)
Q Consensus 178 g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~ 257 (596)
.++|+++|+.||++||++|+++++.|++++++....
T Consensus 125 ------~~~d~~~~~~~l~el~~~l~~~~~~l~~~v~~~~~~-------------------------------------- 160 (318)
T cd02876 125 ------VPDKRKELIQLVIHLGETLHSANLKLILVIPPPREK-------------------------------------- 160 (318)
T ss_pred ------CHHHHHHHHHHHHHHHHHHhhcCCEEEEEEcCcccc--------------------------------------
Confidence 135789999999999999988888888887653210
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccc
Q psy11626 258 TLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 337 (596)
Q Consensus 258 ~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~ 337 (596)
T Consensus 161 -------------------------------------------------------------------------------- 160 (318)
T cd02876 161 -------------------------------------------------------------------------------- 160 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCC
Q psy11626 338 TGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSA 417 (596)
Q Consensus 338 ~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~a 417 (596)
+ ........||+++|++++|||+||+||+|++ ..+||+|
T Consensus 161 ----~---------------------------------~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~----~~~g~~a 199 (318)
T cd02876 161 ----G---------------------------------NQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP----QRPGPNA 199 (318)
T ss_pred ----c---------------------------------cccccccccCHHHHHhhccEEEEEeeccCCC----CCCCCCC
Confidence 0 0001123589999999999999999999987 3579999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHcC-CCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcchHHHH
Q psy11626 418 PLHFVYGRVPHQNANAMVRWFIEHG-VELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEI 496 (596)
Q Consensus 418 PL~~~~~~~~~~sv~~~v~~~~~~G-vp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~Y~~i 496 (596)
||++ ++.+|++|++.| +|++|||||||+|||.|++.+. + ++.+ | ..|.++
T Consensus 200 pl~~---------v~~~v~~~~~~~~vp~~KlvlGip~YG~~w~~~~~----~------------~~~~---~-~~~~~~ 250 (318)
T cd02876 200 PLSW---------VRSCLELLLPESGKKRAKILLGLNFYGNDYTLPGG----G------------GAIT---G-SEYLKL 250 (318)
T ss_pred CcHH---------HHHHHHHHHhcCCCCHHHeEEeccccccccccCCC----C------------ceee---h-HHHHHH
Confidence 9974 899999999987 9999999999999999987530 0 0101 1 245555
Q ss_pred hhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCCCC
Q psy11626 497 CPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576 (596)
Q Consensus 497 ~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD~ 576 (596)
|.. .+ ++..||++....+|.|...+ .++||+|||++|++.|++||+++|| |+|+|+|++++.
T Consensus 251 ~~~---~~--------~~~~~d~~~~~~~~~y~~~~------~~~~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~lg~~~~ 312 (318)
T cd02876 251 LKS---NK--------PKLQWDEKSAEHFFEYKNKG------GKHAVFYPTLKSIQLRLDLAKELGT-GISIWELGQGLD 312 (318)
T ss_pred HHh---cC--------CCceeccCCCcceEEEecCC------CcEEEEeCCHHHHHHHHHHHHHcCC-cEEEEcccCCch
Confidence 543 21 36788987666678887531 3789999999999999999999999 999999999874
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.5e-47 Score=405.24 Aligned_cols=272 Identities=19% Similarity=0.312 Sum_probs=204.5
Q ss_pred HHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccc
Q psy11626 89 QITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSI 168 (596)
Q Consensus 89 ~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~ 168 (596)
+++..+++ +++||+++ |++.. .++.+++.|++||+++++++++|||||||||||+|...+
T Consensus 68 ~~~~~A~~-~~v~v~~~-~~~~~--------~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~---------- 127 (358)
T cd02875 68 ELLCYAHS-KGVRLVLK-GDVPL--------EQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKG---------- 127 (358)
T ss_pred HHHHHHHH-cCCEEEEE-CccCH--------HHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCC----------
Confidence 45554444 49999987 33322 468899999999999999999999999999999997532
Q ss_pred hhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhc--CcEEEEEecCCcccccccchhhhhcccceeeeeccccccCC
Q psy11626 169 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE--NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFD 246 (596)
Q Consensus 169 ~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~--~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~ 246 (596)
++|+++|+.||++||++|++. +++||++++
T Consensus 128 ----------------~~d~~~~t~llkelr~~l~~~~~~~~Lsvav~-------------------------------- 159 (358)
T cd02875 128 ----------------SPEYYALTELVKETTKAFKKENPGYQISFDVA-------------------------------- 159 (358)
T ss_pred ----------------cchHHHHHHHHHHHHHHHhhcCCCcEEEEEEe--------------------------------
Confidence 136788888999988888765 455665553
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCcccccc
Q psy11626 247 VPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTL 326 (596)
Q Consensus 247 ~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~ 326 (596)
T Consensus 160 -------------------------------------------------------------------------------- 159 (358)
T cd02875 160 -------------------------------------------------------------------------------- 159 (358)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcC-c-ccccChhhHhhhccEeEEecccCC
Q psy11626 327 GSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVN-Y-TVYFDVPSITQHLDMITLHAYDFR 404 (596)
Q Consensus 327 ~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~-~-~~~~d~~~i~~~vD~i~vM~YD~~ 404 (596)
..+. . ...||+++|++++|||+||+||+|
T Consensus 160 -------------------------------------------------~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h 190 (358)
T cd02875 160 -------------------------------------------------WSPSCIDKRCYDYTGIADASDFLVVMDYDEQ 190 (358)
T ss_pred -------------------------------------------------cCcccccccccCHHHHHhhCCEeeEEeeccc
Confidence 2111 1 124899999999999999999999
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCC
Q psy11626 405 TP-QRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGT 483 (596)
Q Consensus 405 ~~-~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~ 483 (596)
++ |++++.++++||+. +++.+|++|+..|+|++|||||||+|||.|++.+.....+... ....|...++
T Consensus 191 ~~~w~~~~~~g~~ap~~---------~v~~~v~~~~~~gvp~~KLvLGip~YGr~w~~~~~~~~~~~~~-~~~~p~~g~~ 260 (358)
T cd02875 191 SQIWGKECIAGANSPYS---------QTLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNGNLEDVVCT-IPKVPFRGAN 260 (358)
T ss_pred CCCCCCCCCCCCCCCch---------hHHHHHHHHHHcCCCHHHeEEEeCCCCCceeCCCCcccCcccC-CCCCCcCCCC
Confidence 75 66556788999975 4899999999999999999999999999999876542111000 0011111122
Q ss_pred ccC-CCCcchHHHHhhhhccCCccCCCCCCceeccCcccccceee-EecccccccCCCCEEEEeCCHHHHHHHHHHHHHc
Q psy11626 484 ITK-EEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYA-FRLADKKLKQEYGTWVSFEEPETAGYKASYAKLA 561 (596)
Q Consensus 484 ~t~-~~g~l~Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~-~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~ 561 (596)
++. ..+.++|.+||..+...+ +...||+..+ ++|. |.+.++ ..+||+|||++|++.|++||+++
T Consensus 261 ~~~~~g~~i~Y~ei~~~~~~~~--------~~~~wD~~~~-~py~~y~d~~g-----~~~~V~ydD~~Si~~K~~~a~~~ 326 (358)
T cd02875 261 CSDAAGRQIPYSEIMKQINSSI--------GGRLWDSEQK-SPFYNYKDKQG-----NLHQVWYDNPQSLSIKVAYAKNL 326 (358)
T ss_pred CcCCCCCccCHHHHHHHHhcCC--------Cceeeccccc-cceEEEecCCC-----cEEEEEeCCHHHHHHHHHHHHhC
Confidence 232 234789999999875532 3677888754 6765 443222 25799999999999999999999
Q ss_pred CCceEEEEeCCCCCCCCCCC
Q psy11626 562 GLGGVAIIDLSLDDFRGMCN 581 (596)
Q Consensus 562 gLgGv~~W~l~~DD~~g~c~ 581 (596)
||||+|+|+|++||++|.|.
T Consensus 327 gL~Gv~iW~ld~dD~~g~~~ 346 (358)
T cd02875 327 GLKGIGMWNGDLLDYSGLPI 346 (358)
T ss_pred CCCeEEEEeccccccCCCch
Confidence 99999999999999999985
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=4.3e-46 Score=389.04 Aligned_cols=284 Identities=21% Similarity=0.348 Sum_probs=222.7
Q ss_pred CCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCceEEEEEcCCCCC-CChhhhhhhcCCHH
Q psy11626 48 LSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDD-DDKEKYLEVLDDPK 126 (596)
Q Consensus 48 ~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lkvllsiGG~~~~-~~s~~f~~~~~~~~ 126 (596)
.+++|||++.++.++.+|.+. .. ...+++...+++ ++|||++||||..+ .++..|+.++++++
T Consensus 23 ~~~lt~v~p~w~~~~~~g~~~--~~-------------~~~~~~~~a~~~-~~kv~~~i~~~~~~~~~~~~~~~~l~~~~ 86 (313)
T cd02874 23 APYLTYIAPFWYGVDADGTLT--GL-------------PDERLIEAAKRR-GVKPLLVITNLTNGNFDSELAHAVLSNPE 86 (313)
T ss_pred cCCCCEEEEEEEEEcCCCCCC--CC-------------CCHHHHHHHHHC-CCeEEEEEecCCCCCCCHHHHHHHhcCHH
Confidence 468999999999999777632 11 112455544554 99999999999721 01678999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcC
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAEN 206 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~ 206 (596)
.|++|+++|++++++|||||||||||++... |+++|+.||++||++|++++
T Consensus 87 ~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~-----------------------------d~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 87 ARQRLINNILALAKKYGYDGVNIDFENVPPE-----------------------------DREAYTQFLRELSDRLHPAG 137 (313)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccCCHH-----------------------------HHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999998543 68999999999999999888
Q ss_pred cEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCCh
Q psy11626 207 FLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDP 286 (596)
Q Consensus 207 ~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~ 286 (596)
++|+++++|......
T Consensus 138 ~~lsv~~~p~~~~~~----------------------------------------------------------------- 152 (313)
T cd02874 138 YTLSTAVVPKTSADQ----------------------------------------------------------------- 152 (313)
T ss_pred cEEEEEecCcccccc-----------------------------------------------------------------
Confidence 999988765321000
Q ss_pred HHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccC
Q psy11626 287 KYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE 366 (596)
Q Consensus 287 ~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~ 366 (596)
T Consensus 153 -------------------------------------------------------------------------------- 152 (313)
T cd02874 153 -------------------------------------------------------------------------------- 152 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCC
Q psy11626 367 NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQ 446 (596)
Q Consensus 367 ~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp~~ 446 (596)
.......||+++|++++|||+||+||+|++|+ .+||+||+.+ ++..+++++ .|+|++
T Consensus 153 ----------~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~---~~gp~a~~~~---------~~~~~~~~~-~gvp~~ 209 (313)
T cd02874 153 ----------FGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGG---PPGPVAPIGW---------VERVLQYAV-TQIPRE 209 (313)
T ss_pred ----------ccccccccCHHHHHhhCCEEEEEEeccCCCCC---CCCccCChHH---------HHHHHHHHH-hcCCHH
Confidence 00122358999999999999999999999976 4689999863 677787765 889999
Q ss_pred cEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcchHHHHhhhhccCCccCCCCCCceeccCccccccee
Q psy11626 447 KLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTY 526 (596)
Q Consensus 447 KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y 526 (596)
||+||||+|||.|++.+.. ....+.++|.++|+.+...+ +...||+.+. ++|
T Consensus 210 KlvlGip~YG~~w~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~-~~~ 261 (313)
T cd02874 210 KILLGIPLYGYDWTLPYKK-------------------GGKASTISPQQAINLAKRYG--------AEIQYDEEAQ-SPF 261 (313)
T ss_pred HEEEeecccccccccCCCC-------------------CcCccccCHHHHHHHHHHcC--------CCeEECcccC-CCc
Confidence 9999999999999975311 01234578888888776543 4678898755 554
Q ss_pred -eEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCCCCC
Q psy11626 527 -AFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFR 577 (596)
Q Consensus 527 -~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD~~ 577 (596)
.|...++ ..+||+|||++|++.|++|++++||||+++|+|++||..
T Consensus 262 ~~y~~~~g-----~~~~v~y~d~~Si~~K~~~~~~~~lgGv~iW~lg~dD~~ 308 (313)
T cd02874 262 FRYVDEQG-----RRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLEDPQ 308 (313)
T ss_pred EEEEeCCC-----CEEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCCcc
Confidence 4443222 368999999999999999999999999999999999964
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.1e-42 Score=352.53 Aligned_cols=252 Identities=24% Similarity=0.367 Sum_probs=200.5
Q ss_pred ceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCce
Q psy11626 22 QYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLN 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lk 101 (596)
++|||.+|..+. ..++++| .++||||+|+|+.++++|++.+.. . ...+..+.+..++ +++|
T Consensus 1 vigyy~~w~~~~-----~~~~~~~--~~~lThv~~~f~~i~~~G~l~~~~--~---------~~~~~~~~~~~~~-~~~k 61 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTID--FSKLTHINLAFANPDANGTLNANP--V---------RSELNSVVNAAHA-HNVK 61 (253)
T ss_pred CEEEeCCccccc-----CCcccCC--hhhCCeEEEEEEEECCCCeEEecC--c---------HHHHHHHHHHHHh-CCCE
Confidence 468898886543 3688998 679999999999999888766532 1 2233344443333 5999
Q ss_pred EEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCC
Q psy11626 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 181 (596)
Q Consensus 102 vllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 181 (596)
||+|||||.. ..|+.++++++.|++|+++|++++++|||||||||||+|...
T Consensus 62 vl~sigg~~~----~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~------------------------ 113 (253)
T cd06545 62 ILISLAGGSP----PEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT------------------------ 113 (253)
T ss_pred EEEEEcCCCC----CcchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc------------------------
Confidence 9999999976 347779999999999999999999999999999999998532
Q ss_pred CCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCccccccccccccccc
Q psy11626 182 DNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHA 261 (596)
Q Consensus 182 ~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~ 261 (596)
+++|..|+++||++|++.+++||+++++...
T Consensus 114 ------~~~~~~fv~~Lr~~l~~~~~~lt~av~~~~~------------------------------------------- 144 (253)
T cd06545 114 ------FGDYLVFIRALYAALKKEGKLLTAAVSSWNG------------------------------------------- 144 (253)
T ss_pred ------HhHHHHHHHHHHHHHhhcCcEEEEEccCccc-------------------------------------------
Confidence 5789999999999999888888888753210
Q ss_pred ccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCC
Q psy11626 262 YDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPK 341 (596)
Q Consensus 262 yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~ 341 (596)
T Consensus 145 -------------------------------------------------------------------------------- 144 (253)
T cd06545 145 -------------------------------------------------------------------------------- 144 (253)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCC
Q psy11626 342 DDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHF 421 (596)
Q Consensus 342 ~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~ 421 (596)
.+...++.+++|||+||+||+||+|.. ..++++||+.
T Consensus 145 -----------------------------------------~~~~~~~~~~vD~i~vMtYD~~g~~~~-~~~g~~a~~~- 181 (253)
T cd06545 145 -----------------------------------------GAVSDSTLAYFDFINIMSYDATGPWWG-DNPGQHSSYD- 181 (253)
T ss_pred -----------------------------------------ccccHHHHhhCCEEEEEcCcCCCCCCC-CCCCCCCchH-
Confidence 001135567899999999999999964 2468888875
Q ss_pred CCCCCCCCCHHHHHHHHHHcCC-CCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcchHHHHhhhh
Q psy11626 422 VYGRVPHQNANAMVRWFIEHGV-ELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQL 500 (596)
Q Consensus 422 ~~~~~~~~sv~~~v~~~~~~Gv-p~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~Y~~i~~~~ 500 (596)
.++..+++|+..|+ |++||+||||+|||.|.
T Consensus 182 --------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~---------------------------------------- 213 (253)
T cd06545 182 --------DAVNDLNYWNERGLASKDKLVLGLPFYGYGFY---------------------------------------- 213 (253)
T ss_pred --------hHHHHHHHHHHcCCCCHHHEEEEeCCcccccc----------------------------------------
Confidence 37899999999998 99999999999999661
Q ss_pred ccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCC
Q psy11626 501 VSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRGMC 580 (596)
Q Consensus 501 ~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD~~g~c 580 (596)
|+.+.+++.|+++++++ +||+|+|++++|..
T Consensus 214 --------------------------------------------~~~~~~~~~~~~~~~~~-~gG~~~w~~~~d~~---- 244 (253)
T cd06545 214 --------------------------------------------YNGIPTIRNKVAFAKQN-YGGVMIWELSQDAS---- 244 (253)
T ss_pred --------------------------------------------CCCHHHHHHHHHHHHHh-cCeEEEEeccCCCC----
Confidence 33445699999999999 99999999999984
Q ss_pred CCCCchHHHHH
Q psy11626 581 NSNKFPILRAA 591 (596)
Q Consensus 581 ~~~~~pLl~ai 591 (596)
..+.|+.||
T Consensus 245 --~~~~l~~~~ 253 (253)
T cd06545 245 --GENSLLNAI 253 (253)
T ss_pred --CCcchhhcC
Confidence 344688775
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=8.3e-42 Score=353.72 Aligned_cols=275 Identities=17% Similarity=0.191 Sum_probs=205.8
Q ss_pred CCcccEEEEEEEEec-CCCceEEecCCccccccccchhhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHH
Q psy11626 48 LSMCTHLVYGFAGIS-DSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPK 126 (596)
Q Consensus 48 ~~~~Thviyafa~v~-~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~ 126 (596)
..++|||+..+..+. ++|.+.... + ......+.++|+++|-++++.+++|+..+ +..|+.++++++
T Consensus 21 ~~~l~~vsP~W~~~~~~~g~l~~~~-d----------~~~~~~~~~~k~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~ 87 (298)
T cd06549 21 APRLDWLVPEWLNLTGPEGRIDVFV-D----------PQGVAIIAAAKAHPKVLPLVQNISGGAWD--GKNIARLLADPS 87 (298)
T ss_pred hccCCEEeceeEEEecCCCceeccC-C----------hHHHHHHHHHHcCCceeEEEEecCCCCCC--HHHHHHHhcCHH
Confidence 457999999999997 566654311 1 22333456677777889999999987664 567999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcC
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAEN 206 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~ 206 (596)
.|++|+++|++++++|||||||||||++... |+++|+.||++||++|++.+
T Consensus 88 ~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~-----------------------------d~~~~~~fl~eL~~~l~~~~ 138 (298)
T cd06549 88 ARAKFIANIAAYLERNQADGIVLDFEELPAD-----------------------------DLPKYVAFLSELRRRLPAQG 138 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEecCCCChh-----------------------------HHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999987432 67888888888888888777
Q ss_pred cEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCCh
Q psy11626 207 FLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDP 286 (596)
Q Consensus 207 ~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~ 286 (596)
++||++||+..
T Consensus 139 ~~lsv~v~~~~--------------------------------------------------------------------- 149 (298)
T cd06549 139 KQLTVTVPADE--------------------------------------------------------------------- 149 (298)
T ss_pred cEEEEEecCCC---------------------------------------------------------------------
Confidence 77777765321
Q ss_pred HHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccC
Q psy11626 287 KYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE 366 (596)
Q Consensus 287 ~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~ 366 (596)
T Consensus 150 -------------------------------------------------------------------------------- 149 (298)
T cd06549 150 -------------------------------------------------------------------------------- 149 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCC
Q psy11626 367 NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQ 446 (596)
Q Consensus 367 ~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp~~ 446 (596)
..+|+++|.+++|+|+||+||+|+++.. .+|.||+. .++..+++. ..|+|++
T Consensus 150 ---------------~~~d~~~l~~~~D~v~lMtYD~~~~~~~---~gp~a~~~---------~~~~~~~~~-~~~vp~~ 201 (298)
T cd06549 150 ---------------ADWNLKALARNADKLILMAYDEHYQGGA---PGPIASQD---------WFESNLAQA-VKKLPPE 201 (298)
T ss_pred ---------------CCCCHHHHHHhCCEEEEEEeccCCCCCC---CCCCCChh---------hHHHHHHHH-HhCCCHH
Confidence 1367889999999999999999987653 35555543 356666664 4789999
Q ss_pred cEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcchHHHHhhhhccCCccCCCCCCceeccCccccccee
Q psy11626 447 KLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTY 526 (596)
Q Consensus 447 KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y 526 (596)
|||||||+|||.|++.... . .++..+....+...+ ....||+......|
T Consensus 202 KlvlGip~YG~~w~~~~~~--------------~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 250 (298)
T cd06549 202 KLIVALGSYGYDWTKGGNT--------------K---------AISSEAAWLLAAHAS--------AAVKFDDKASNATY 250 (298)
T ss_pred HEEEEecccCccccCCCCC--------------c---------ccCHHHHHHHHHHcC--------CcceecccccCCce
Confidence 9999999999999864210 0 112233333233222 14456665554556
Q ss_pred eEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCCCCC
Q psy11626 527 AFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFR 577 (596)
Q Consensus 527 ~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD~~ 577 (596)
.|...++ ..++|+|||++|++.|+++|+++||+|+++|+|++||..
T Consensus 251 ~~~~~~g-----~~h~Vw~~d~~Sl~~K~~~a~~~~l~Gva~W~lg~ed~~ 296 (298)
T cd06549 251 FFYDDEG-----VSHEVWMLDAVTLFNQLKAVQRLGPAGVALWRLGSEDPG 296 (298)
T ss_pred EEEcCCC-----cEEEEEeccHHHHHHHHHHHHHcCCCcEEEEeccCCCCC
Confidence 6654333 267889999999999999999999999999999999863
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=8.5e-33 Score=271.89 Aligned_cols=151 Identities=32% Similarity=0.649 Sum_probs=121.2
Q ss_pred ceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCce
Q psy11626 22 QYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLN 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lk 101 (596)
+.|||.+|..++.+. +..++ .++||||+|+|+.++.+|.... ..+. .. ......+.++++++|++|
T Consensus 1 vv~y~~~w~~~~~~~----~~~~~--~~~~thvi~~f~~v~~~~~~~~-~~~~---~~----~~~~~~i~~l~~~~~g~k 66 (210)
T cd00598 1 VICYYDGWSSGRGPD----PTDIP--LSLCTHIIYAFAEISSDGSLNL-FGDK---SE----EPLKGALEELASKKPGLK 66 (210)
T ss_pred CEEEEccccccCCCC----hhhCC--cccCCEEEEeeEEECCCCCEec-ccCc---cc----HHHHHHHHHHHHhCCCCE
Confidence 468999998776432 67777 5789999999999997776433 1111 11 456677888888889999
Q ss_pred EEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCC
Q psy11626 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 181 (596)
Q Consensus 102 vllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 181 (596)
||+|||||.. +..| .++.+++.|++|++++++++++|+|||||||||+|.....
T Consensus 67 v~~sigg~~~---~~~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~---------------------- 120 (210)
T cd00598 67 VLISIGGWTD---SSPF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN---------------------- 120 (210)
T ss_pred EEEEEcCCCC---CCCc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----------------------
Confidence 9999999987 3445 8899999999999999999999999999999999976420
Q ss_pred CCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCC
Q psy11626 182 DNPTLHREHFTLLIREMKAAFRAENFLLSASVLPH 216 (596)
Q Consensus 182 ~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~ 216 (596)
.++++|+.||++||++|++++++||+++++.
T Consensus 121 ----~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~ 151 (210)
T cd00598 121 ----SDRENFITLLRELRSALGAANYLLTIAVPAS 151 (210)
T ss_pred ----cHHHHHHHHHHHHHHHhcccCcEEEEEecCC
Confidence 2578999999999999988888888887653
No 16
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.97 E-value=1.3e-30 Score=262.12 Aligned_cols=140 Identities=15% Similarity=0.304 Sum_probs=104.1
Q ss_pred CCCCCCcCCCCCcccEEEEEEE-EecC---CCceEEecCCccccccccchhhhHHHHHHHhhhCCCceEEEEEcCCCCCC
Q psy11626 38 KVGPEELKPALSMCTHLVYGFA-GISD---SGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDD 113 (596)
Q Consensus 38 ~~~~~~i~~~~~~~Thviyafa-~v~~---~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lkvllsiGG~~~~~ 113 (596)
..++++||.....||||||||| ..+. .++..+.. ..+.+ ...++++.+||+++|++|||||||||+...
T Consensus 12 ~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~lK~~~p~lKvllSiGG~~~~~ 84 (253)
T cd06544 12 GVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNP---YWDTE----NLTPEAVKSIKAQHPNVKVVISIGGRGVQN 84 (253)
T ss_pred CccccccCCCCCeeEEEEEEeeeecccccCCCCCcccc---ccCcc----ccCHHHHHHHHHhCCCcEEEEEeCCCCCCC
Confidence 4679999954444999999999 3332 11222211 11222 457889999999999999999999999742
Q ss_pred ChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHH
Q psy11626 114 DKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTL 193 (596)
Q Consensus 114 ~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 193 (596)
+..+....+....|++|++|+++||++|||||||||||+|.. |+++|+.
T Consensus 85 -~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~------------------------------d~~~f~~ 133 (253)
T cd06544 85 -NPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFPA------------------------------DPDTFVE 133 (253)
T ss_pred -CccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCCc------------------------------CHHHHHH
Confidence 123333445555677889999999999999999999999842 5799999
Q ss_pred HHHHHHHHhhhcCcEEEEEecC
Q psy11626 194 LIREMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 194 ll~~Lr~~l~~~~~~ls~av~~ 215 (596)
|+++||++|++.++++.++++|
T Consensus 134 ll~~l~~~l~~~~~lt~a~vap 155 (253)
T cd06544 134 CIGQLITELKNNGVIKVASIAP 155 (253)
T ss_pred HHHHHHHHhhhcCCeEEEEecC
Confidence 9999999999888666666654
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.97 E-value=1.9e-29 Score=255.06 Aligned_cols=148 Identities=18% Similarity=0.266 Sum_probs=115.6
Q ss_pred ceeEeeeeeeecCCCCCCCCC-CcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCc
Q psy11626 22 QYHIHSNLYFISSGTAKVGPE-ELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNL 100 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~-~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~l 100 (596)
++|||.+|+..+.......|. .++ .++||||||||+.++.+|++.+.. .+.+.. .....++++.++|+ +++
T Consensus 2 ~v~y~~~~~~~~~~~~~~~~~~~~~--~~~~THvi~af~~i~~~G~l~~~d--~~~~~~--~~~~~~~~i~~~~~--~g~ 73 (256)
T cd06546 2 LVIYYQTTHPSNGDPISSLLLVTEK--GIALTHLIVAALHINDDGNIHLND--HPPDHP--RFTTLWTELAILQS--SGV 73 (256)
T ss_pred EEEEEccEECCCCCcccccccccCC--CCCCceEEEEEEEECCCCeEEECC--CCCCcc--hhhHHHHHHHHHHh--CCC
Confidence 579999998776655443333 444 579999999999999888766543 222111 01356667777765 599
Q ss_pred eEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCC
Q psy11626 101 NIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPK 180 (596)
Q Consensus 101 kvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~ 180 (596)
|||||||||.. ..|+.++++++.|++|+.++++++++|+|||||||||+|..
T Consensus 74 KVllSiGG~~~----~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~------------------------ 125 (256)
T cd06546 74 KVMGMLGGAAP----GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS------------------------ 125 (256)
T ss_pred EEEEEECCCCC----CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC------------------------
Confidence 99999999985 34888889999999999999999999999999999999842
Q ss_pred CCCCccchHHHHHHHHHHHHHhhhcCcEEEEEe
Q psy11626 181 DDNPTLHREHFTLLIREMKAAFRAENFLLSASV 213 (596)
Q Consensus 181 ~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av 213 (596)
.++|..|+++||++|+ ++++||+|+
T Consensus 126 -------~~~~~~ll~~Lr~~~~-~~~~lT~Ap 150 (256)
T cd06546 126 -------LDGIIRLIDRLRSDFG-PDFIITLAP 150 (256)
T ss_pred -------HhHHHHHHHHHHHHhC-CCcEEEECC
Confidence 4689999999999996 467888765
No 18
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=258.52 Aligned_cols=236 Identities=18% Similarity=0.253 Sum_probs=182.4
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHH
Q psy11626 115 KEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLL 194 (596)
Q Consensus 115 s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~l 194 (596)
.+.++.++.++..++++++++++.++.+|+.||.||+|.... .|++.|..|
T Consensus 179 ~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-----------------------------~DR~~yt~f 229 (423)
T COG3858 179 GELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-----------------------------GDRELYTDF 229 (423)
T ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-----------------------------HHHHHHHHH
Confidence 456789999999999999999999999999999999998754 389999999
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCC
Q psy11626 195 IREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEA 274 (596)
Q Consensus 195 l~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~ 274 (596)
++++|++|++.|+.+|+||+|......
T Consensus 230 lR~~r~~l~~~G~~~siAvaakt~~~~----------------------------------------------------- 256 (423)
T COG3858 230 LRQVRDALHSGGYTVSIAVAAKTSDLQ----------------------------------------------------- 256 (423)
T ss_pred HHHHHHHhccCCeEEEEEecCCCCCCc-----------------------------------------------------
Confidence 999999999999999999987542100
Q ss_pred CCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHH
Q psy11626 275 DYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTL 354 (596)
Q Consensus 275 ~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~ 354 (596)
T Consensus 257 -------------------------------------------------------------------------------- 256 (423)
T COG3858 257 -------------------------------------------------------------------------------- 256 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy11626 355 LIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAM 434 (596)
Q Consensus 355 flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~ 434 (596)
.......||+..+.+.+|+|.||+||.|.+|.. .|+.||..+ |+..
T Consensus 257 ----------------------~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG~---PG~vA~i~~---------vr~~ 302 (423)
T COG3858 257 ----------------------VGSWHGAYDYVALGKIADFVILMTYDWHYSGGP---PGPVASIGW---------VRKV 302 (423)
T ss_pred ----------------------CccccchhhhhhhceeeeEEEEEEeccCcCCCC---CCcccCchh---------Hhhh
Confidence 001223588999999999999999999999864 477787764 6788
Q ss_pred HHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcchHHHHhhhhccCCccCCCCCCce
Q psy11626 435 VRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLR 514 (596)
Q Consensus 435 v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~Y~~i~~~~~~~~~~~g~~~~~~ 514 (596)
+++-+.. +|++||+||||+||+.|.+.......+.. . ++..+-..+....+ -+
T Consensus 303 ieya~T~-iP~~Kv~mGip~YGYDW~~~y~~~g~~~~-----------------a-~~~~~~i~ia~~y~--------A~ 355 (423)
T COG3858 303 IEYALTV-IPAEKVMMGIPLYGYDWTLPYDPLGYLAR-----------------A-ISPDEAIDIANRYN--------AT 355 (423)
T ss_pred hhhhhee-cchHHeEEccccccccccCCCCCCcceee-----------------e-cCcchhhhhhcccC--------Cc
Confidence 8877774 99999999999999999986543211110 0 12222111111111 26
Q ss_pred eccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCCCCCCCC
Q psy11626 515 KQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578 (596)
Q Consensus 515 ~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~~DD~~g 578 (596)
.+||...+...|.|.+.. ..+++|+|||.+|++.|.+++|++||.||++|.|++.|.+.
T Consensus 356 Iq~D~~~qsp~F~y~D~e-----g~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~~ 414 (423)
T COG3858 356 IQYDATSQSPFFYYVDKE-----GRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRN 414 (423)
T ss_pred cCcCccccCceEEEEcCC-----CceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchhH
Confidence 779987765455555433 23899999999999999999999999999999999999863
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.96 E-value=3.5e-27 Score=245.96 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=115.8
Q ss_pred CCceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecC--CccccccccchhhhHHHHHHHhhhC
Q psy11626 20 KDQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSL--DKELDTDKNKGKELFKQITALKTFQ 97 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~--~~~~d~~~~~~~~~~~~~~~lk~~~ 97 (596)
|..+|||.+|..++.... +.++.++ +.||||+|||+.++.++...+... +...... .....+++..+|++
T Consensus 1 k~~vgY~~~w~~~~~~~~-~~~~~~~---~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~q~~- 72 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-QDLDDVP---SKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYS---PAEFKADIKALQAK- 72 (312)
T ss_pred CeEEEecCcccCCCCCCC-CCcccCC---CCCCEEEEcceeecCCCceeEeecccCCcccCC---hHHHHHHHHHHHHC-
Confidence 346899999998876553 4566665 579999999999986665443210 0000000 14556677778775
Q ss_pred CCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhccccccc
Q psy11626 98 PNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 177 (596)
Q Consensus 98 p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
++|||||||||... ..+.+++.|++|++++++++++|||||||||||+|....
T Consensus 73 -G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~------------------- 125 (312)
T cd02871 73 -GKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPL------------------- 125 (312)
T ss_pred -CCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccC-------------------
Confidence 89999999999762 247788999999999999999999999999999986542
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEe
Q psy11626 178 GPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASV 213 (596)
Q Consensus 178 g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av 213 (596)
+ ..+++++|+.||++||+++++ +++||+|+
T Consensus 126 ~-----~~~~~~~~~~~lk~lr~~~~~-~~~lT~AP 155 (312)
T cd02871 126 N-----ATPVITNLISALKQLKDHYGP-NFILTMAP 155 (312)
T ss_pred C-----cHHHHHHHHHHHHHHHHHcCC-CeEEEECC
Confidence 1 124789999999999999975 88999874
No 20
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.83 E-value=7.1e-20 Score=185.91 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=128.7
Q ss_pred ceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCce
Q psy11626 22 QYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLN 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lk 101 (596)
.++||.+|.-.- ......+.++|+ .+++|++.++.+..++...+. ... ....+.+..|+++ |+|
T Consensus 3 ~~~y~~~~~~~~-~~~~~~l~~~pd---s~D~v~lf~~~~~~~~~~~~~----~~~------~~~~~~i~~l~~k--G~K 66 (255)
T cd06542 3 SFGYFEVWDDKG-ASLQESLLNLPD---SVDMVSLFAANINLDAATAVQ----FLL------TNKETYIRPLQAK--GTK 66 (255)
T ss_pred EEEEEEecCCcC-cccccccccCCC---cceEEEEcccccCcccccchh----hhh------HHHHHHHHHHhhC--CCE
Confidence 467888886332 234467888984 488998855554422210000 000 3344556667666 999
Q ss_pred EEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCC
Q psy11626 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 181 (596)
Q Consensus 102 vllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 181 (596)
||+|||||.. ...| ....+++.|++|+++|++++++|||||||||||+|..... +
T Consensus 67 Vl~sigg~~~---~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~------------------~--- 121 (255)
T cd06542 67 VLLSILGNHL---GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKN------------------G--- 121 (255)
T ss_pred EEEEECCCCC---CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCC------------------C---
Confidence 9999999987 3455 3467889999999999999999999999999999875311 0
Q ss_pred CCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeecccc
Q psy11626 182 DNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242 (596)
Q Consensus 182 ~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~ 242 (596)
..+.+.++|..|+++||+++++.+++|++++++..... +.+++.+++|+|++|+|+-
T Consensus 122 -~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~~~~~~~~~---~~~~~~~~vDyv~~~~y~~ 178 (255)
T cd06542 122 -TSQPSNEAFVRLIKELRKYMGPTDKLLTIDGYGQALSN---DGEEVSPYVDYVIYQYYGS 178 (255)
T ss_pred -CCcchHHHHHHHHHHHHHHhCcCCcEEEEEecCCchhc---CHHHHHHhCCEEEeeccCC
Confidence 01247899999999999999987899999988755432 6788899999999999885
No 21
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.80 E-value=2.2e-19 Score=184.60 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=115.8
Q ss_pred CcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHH
Q psy11626 49 SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYR 128 (596)
Q Consensus 49 ~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r 128 (596)
..|+||++||+.+..+++....... ..+.. ....+++.+||++ ++||+||+|||... . ...+...|
T Consensus 24 ~g~~~v~lAFi~~~~~~~~~w~g~~-~~~~~----~~~~~~i~~lk~~--G~kViiS~GG~~g~----~---~~~~~~~~ 89 (294)
T cd06543 24 TGVKAFTLAFIVASGGCKPAWGGSY-PLDQG----GWIKSDIAALRAA--GGDVIVSFGGASGT----P---LATSCTSA 89 (294)
T ss_pred cCCCEEEEEEEEcCCCCcccCCCCC-Ccccc----hhHHHHHHHHHHc--CCeEEEEecCCCCC----c---cccCcccH
Confidence 4799999999988755543322110 11111 4567888999988 79999999999872 2 33377899
Q ss_pred HHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcE
Q psy11626 129 KSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFL 208 (596)
Q Consensus 129 ~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ 208 (596)
++|++++.++|++|||||||||||+|..... ...+++..+|++||++++ ++.
T Consensus 90 ~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~--------------------------~~~~~~~~al~~Lq~~~p--~l~ 141 (294)
T cd06543 90 DQLAAAYQKVIDAYGLTHLDFDIEGGALTDT--------------------------AAIDRRAQALALLQKEYP--DLK 141 (294)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeccCCccccc--------------------------hhHHHHHHHHHHHHHHCC--CcE
Confidence 9999999999999999999999999865421 135899999999999984 678
Q ss_pred EEEEecCCccc--ccccchhhhhc----ccceeeeecccccc
Q psy11626 209 LSASVLPHVNY--TVYFDVPSITQ----HLDMITLHAYDFLY 244 (596)
Q Consensus 209 ls~av~~~~~~--~~~~~~~~~~~----~~d~i~~m~Yd~~~ 244 (596)
||+++|..+.. ..++++.+.++ .+|.||||||||+.
T Consensus 142 vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiMtmDyg~ 183 (294)
T cd06543 142 ISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIMTMDYGS 183 (294)
T ss_pred EEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeeeeecCCC
Confidence 88888743332 24566777777 88999999999863
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.80 E-value=3.2e-18 Score=174.83 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=85.9
Q ss_pred cccEEEEEEEEecCCC-ceEEecCCccccccccchhhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHH
Q psy11626 50 MCTHLVYGFAGISDSG-DYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYR 128 (596)
Q Consensus 50 ~~Thviyafa~v~~~g-~~~~~~~~~~~d~~~~~~~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r 128 (596)
.++.|+++|+..-.++ ...+...+...+.....-.....+|..++++ ++|||||||||.. +..| .+++.|
T Consensus 24 ~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIGG~~~---~~~~----~s~~~a 94 (280)
T cd02877 24 NYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIGGAGG---SYSL----SSDADA 94 (280)
T ss_pred CccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEccCCCC---CcCC----CCHHHH
Confidence 5889999999776331 1111111111000000012466677777665 9999999999987 3444 789999
Q ss_pred HHHHHHHHHHH------------HHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHH
Q psy11626 129 KSFIETTVAAL------------KKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIR 196 (596)
Q Consensus 129 ~~f~~si~~~l------------~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~ 196 (596)
++|+++|.+++ .+++|||||||||+|.. .+|..|++
T Consensus 95 ~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~--------------------------------~~~~~l~~ 142 (280)
T cd02877 95 KDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP--------------------------------ENYDALAK 142 (280)
T ss_pred HHHHHHHHHHhCCccccccccccccccccceEEecccCCc--------------------------------cCHHHHHH
Confidence 99999998876 26789999999999752 57899999
Q ss_pred HHHHHhhh---cCcEEEEEe
Q psy11626 197 EMKAAFRA---ENFLLSASV 213 (596)
Q Consensus 197 ~Lr~~l~~---~~~~ls~av 213 (596)
+||+.+++ ++++||+|+
T Consensus 143 ~LR~~~~~~~~~~~~LTaAP 162 (280)
T cd02877 143 RLRSLFASDPSKKYYLTAAP 162 (280)
T ss_pred HHHHHhhcccCCceEEEecc
Confidence 99999976 568888873
No 23
>KOG2091|consensus
Probab=99.80 E-value=1e-17 Score=165.87 Aligned_cols=308 Identities=17% Similarity=0.212 Sum_probs=212.3
Q ss_pred cccccCCceeEeeeeeeecCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhhhHHHHHHHh
Q psy11626 15 EDHLSKDQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94 (596)
Q Consensus 15 ~~~~s~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~lk 94 (596)
.+|....+..|-+.| .+..|.+..|- .+++|||-.-+..+...|+.- ......|.+ ++. +.+++
T Consensus 74 ~r~f~~~vLayVTPW-----Ns~Gydvakif--askft~iSPVW~ql~~qgs~~--~v~G~hdid----~gw---iralR 137 (392)
T KOG2091|consen 74 LRHFGGTVLAYVTPW-----NSHGYDVAKIF--ASKFTYISPVWLQLKDQGSDV--GVYGKHDID----PGW---IRALR 137 (392)
T ss_pred ccccCCceEEEecCc-----CccchhHHHHH--hcccceecchheeehhcCcce--EEeecccCC----hHH---HHHHH
Confidence 345555566665555 45668888887 579999999999998666421 122233444 444 45567
Q ss_pred hhCCCceEEEE--EcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcc
Q psy11626 95 TFQPNLNIMLS--VGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKI 172 (596)
Q Consensus 95 ~~~p~lkvlls--iGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~ 172 (596)
+++++++++.- +--|. +..|..++.+++.|++..+-++++.+++||||+.|+- |+.+
T Consensus 138 k~~~~l~ivPR~~fd~~~----~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlev-----------------wsq~ 196 (392)
T KOG2091|consen 138 KSGKDLHIVPRFYFDEFT----SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEV-----------------WSQL 196 (392)
T ss_pred HhCCCceeeceehhhhcc----chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHH-----------------HHHH
Confidence 88889997633 33444 4688899999999999999999999999999999862 2222
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccc
Q psy11626 173 KKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQ 252 (596)
Q Consensus 173 ~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~ 252 (596)
-+.+ +......|++.|-++|+...+.+-+++||......
T Consensus 197 a~~i----------~d~~al~~v~hl~k~Lhkq~l~~iLvvPp~~~~e~------------------------------- 235 (392)
T KOG2091|consen 197 ADVI----------ADKDALELVEHLGKALHKQELQAILVVPPVIEEEN------------------------------- 235 (392)
T ss_pred HHHH----------hhhHHHHHHHHHHHHHHHhheEEEEEeCCCCcCCC-------------------------------
Confidence 1111 12345667777778887777777777776321100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceec
Q psy11626 253 HLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHK 332 (596)
Q Consensus 253 ~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~ 332 (596)
T Consensus 236 -------------------------------------------------------------------------------- 235 (392)
T KOG2091|consen 236 -------------------------------------------------------------------------------- 235 (392)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCC
Q psy11626 333 IKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKE 412 (596)
Q Consensus 333 ~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~ 412 (596)
|+- ..-..-+++.|.+.+|.+.+||||+.+.. .
T Consensus 236 ------~~~-------------------------------------~~ft~ee~~~L~~~~d~fsLmTYd~s~~~----~ 268 (392)
T KOG2091|consen 236 ------GQL-------------------------------------KFFTPEEFSKLVAVYDGFSLMTYDYSLVQ----G 268 (392)
T ss_pred ------CCc-------------------------------------CcCCHHHHHHHHHhhhheeEEEeeccccc----C
Confidence 000 00112367889999999999999998753 4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEeeecceeeeeeccCCCCCCCCCcccCCCCCCCCccCCCCcch
Q psy11626 413 ADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLS 492 (596)
Q Consensus 413 ~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~~~~~~~~~g~~~~~~~g~~~~g~~t~~~g~l~ 492 (596)
+|++||+.+ ++.++....-...-+.||.|||-|||..|...+. . +.++
T Consensus 269 pg~nap~~w---------i~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gdg-----~------------------~~IT 316 (392)
T KOG2091|consen 269 PGPNAPLEW---------IRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGDG-----G------------------EAIT 316 (392)
T ss_pred CCCCCCHHH---------HHHHHHHhCCccccccceeEeeeccccccccCCC-----C------------------Ccee
Confidence 689999975 6777777644445569999999999999986221 0 1122
Q ss_pred HHHHhhhhccCCccCCCCCCceeccCcccccceeeEecccccccCCCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeCC
Q psy11626 493 YAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572 (596)
Q Consensus 493 Y~~i~~~~~~~~~~~g~~~~~~~~~D~~~~~~~y~~~~~~~~~~~~~~~~isydd~~Sl~~K~~~a~~~gLgGv~~W~l~ 572 (596)
-..-...++... -...||+++....+.|...+. .++-|.|.+..||+.++++|++.| .||++|+++
T Consensus 317 ~~rYL~lLk~~k--------~~~~~Dees~EH~f~~k~n~~-----gkhivfyPTL~Sl~~Ri~lA~~~g-vgISIWe~G 382 (392)
T KOG2091|consen 317 AKRYLQLLKGEK--------SVFKFDEESKEHFFEYKRNDD-----GKHIVFYPTLTSLELRIELARELG-VGISIWEYG 382 (392)
T ss_pred HHHHHHHHhccC--------cceeeccccchhheeeeccCC-----CceEEEecchHhHHHHHHHHHHhC-CceEeeecc
Confidence 222233333322 156788888777888885432 388999999999999999999999 579999998
Q ss_pred C
Q psy11626 573 L 573 (596)
Q Consensus 573 ~ 573 (596)
+
T Consensus 383 q 383 (392)
T KOG2091|consen 383 Q 383 (392)
T ss_pred C
Confidence 7
No 24
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.63 E-value=1.8e-14 Score=146.37 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHH
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAA 362 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~ 362 (596)
..+++.|++|+++++.++++|||||+|||||+|..... ...+.++.+|..|+++||++
T Consensus 83 ~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~----------------------~~~~~~~~~~~~lv~~Lr~~ 140 (255)
T cd06542 83 NLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKN----------------------GTSQPSNEAFVRLIKELRKY 140 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCC----------------------CCCcchHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999863211 01245789999999999999
Q ss_pred hccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcC
Q psy11626 363 FRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHG 442 (596)
Q Consensus 363 l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~G 442 (596)
+++.+++|++++++..... +.+++.+++||+++|+||.++.-.. + .+ .-...|
T Consensus 141 ~~~~~kllt~~~~~~~~~~---~~~~~~~~vDyv~~~~y~~~~~~~~---~-----~~----------------~~~~~g 193 (255)
T cd06542 141 MGPTDKLLTIDGYGQALSN---DGEEVSPYVDYVIYQYYGSSSSSTQ---R-----NW----------------NTNSPK 193 (255)
T ss_pred hCcCCcEEEEEecCCchhc---CHHHHHHhCCEEEeeccCCCCccCC---c-----cc----------------ccccCC
Confidence 9887899999988754322 7899999999999999985433210 0 00 012467
Q ss_pred CCCCcEEEeeeccee
Q psy11626 443 VELQKLVLGIPTFGR 457 (596)
Q Consensus 443 vp~~KLvlGvp~YG~ 457 (596)
+|++|+++|+++++.
T Consensus 194 ~~~~k~i~~~~~~~~ 208 (255)
T cd06542 194 IPPEKMVYTESFEEE 208 (255)
T ss_pred CCHHHceeeeeeecc
Confidence 999999999988863
No 25
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=99.40 E-value=1.1e-12 Score=142.14 Aligned_cols=116 Identities=40% Similarity=0.682 Sum_probs=94.7
Q ss_pred cchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCC
Q psy11626 186 LHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFR 265 (596)
Q Consensus 186 ~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~ 265 (596)
+|+++|+.||++||++|++.+++||++++|.......+|++++++++|+|||||||| |
T Consensus 166 ~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~~~~~d~~~l~~~vD~inlMtYD~----------------------~ 223 (413)
T cd02873 166 EHKEQFTALVRELKNALRPDGLLLTLTVLPHVNSTWYFDVPAIANNVDFVNLATFDF----------------------L 223 (413)
T ss_pred hHHHHHHHHHHHHHHHhcccCcEEEEEecCCchhccccCHHHHhhcCCEEEEEEecc----------------------c
Confidence 589999999999999999999999999987544444578888888888777777776 4
Q ss_pred CCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecc
Q psy11626 266 TPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKI 333 (596)
Q Consensus 266 g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~ 333 (596)
|+|.+|..+++++|++..... .....++..++.+.+.|++--||.++.|. ||+.|+..
T Consensus 224 g~~~~~~~~~~~apL~~~~~~-~~~~~v~~~v~~~~~~gvp~~KlvlGip~---------YGr~w~l~ 281 (413)
T cd02873 224 TPERNPEEADYTAPIYELYER-NPHHNVDYQVKYWLNQGTPASKLNLGIAT---------YGRAWKLT 281 (413)
T ss_pred CCCCCCCccCcCCccCCCccc-cccccHHHHHHHHHHcCCCHHHeEEEEec---------ceeeeEcc
Confidence 667777788999998766433 23357899999999999999999999997 78888754
No 26
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.6e-12 Score=125.78 Aligned_cols=191 Identities=17% Similarity=0.260 Sum_probs=132.1
Q ss_pred ccccccccCCceeEeeeeeee------cCCCCCCCCCCcCCCCCcccEEEEEEEEecCCCceEEecCCccccccccchhh
Q psy11626 12 TRMEDHLSKDQYHIHSNLYFI------SSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKE 85 (596)
Q Consensus 12 ~~~~~~~s~~~~~~~~~~~~~------~~g~~~~~~~~i~~~~~~~Thviyafa~v~~~g~~~~~~~~~~~d~~~~~~~~ 85 (596)
+.|+++.-+-..+|+.||-.- -+....+..++.| +.++.+..+|..-. | ++.+..+..+.+ .+
T Consensus 18 svm~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~---~~ynvv~V~Fmk~~--g--~iptf~P~~~~d----ae 86 (332)
T COG3469 18 SVMPDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTP---RNYNVVTVSFMKGA--G--DIPTFKPYNDPD----AE 86 (332)
T ss_pred hhccccccceEEEeeecccccccccccccceeeeEeccCC---cccceEEEEEeecC--C--CCcccCcCCCCH----HH
Confidence 457888878788999999321 1122345555555 45888999997654 3 344444555554 67
Q ss_pred hHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccccc
Q psy11626 86 LFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTL 165 (596)
Q Consensus 86 ~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~ 165 (596)
+.+++.+|.++ +.-|+||+||... .+.-....-+.|+.+|+.++++|||||+|||.|.-.....
T Consensus 87 Fr~~v~aLnae--GkavllsLGGAdg--------hIeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~------ 150 (332)
T COG3469 87 FRAQVGALNAE--GKAVLLSLGGADG--------HIELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAA------ 150 (332)
T ss_pred HHHHHHHhhcc--CcEEEEEccCccc--------eEEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhc------
Confidence 77888889888 9999999999887 2333344478999999999999999999999997654421
Q ss_pred ccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccC
Q psy11626 166 GSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYF 245 (596)
Q Consensus 166 ~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~ 245 (596)
+ ...-...++|.+|+..+..|.-.-+++.|..+|.... . .|.-+
T Consensus 151 -------------d-------nq~v~p~alk~vk~hyk~~Gk~f~itMAPEfPYl~~~--g---aY~py----------- 194 (332)
T COG3469 151 -------------D-------NQTVIPAALKAVKDHYKNQGKNFFITMAPEFPYLQGW--G---AYIPY----------- 194 (332)
T ss_pred -------------C-------CeeehHHHHHHHHHHHHhcCCceEEEecCCCceecCC--c---ccchH-----------
Confidence 0 1235678899999999887766666677777765431 0 11100
Q ss_pred CcccccccccccccccccCCC
Q psy11626 246 DVPSITQHLDMITLHAYDFRT 266 (596)
Q Consensus 246 ~~~~~~~~~d~~~~~~yd~~g 266 (596)
..+++.++|+++++-|+--|
T Consensus 195 -in~l~~~yD~i~pQlYNqGG 214 (332)
T COG3469 195 -INELRDYYDFIAPQLYNQGG 214 (332)
T ss_pred -HHHHhhHHhhhhHHHhcCCC
Confidence 24567778888888888664
No 27
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.29 E-value=6.9e-11 Score=121.88 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHH
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAA 362 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~ 362 (596)
..+.+.|++|++++.+++.+|++||||||||+|... ..+...++..+|++|+++
T Consensus 83 ~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~--------------------------d~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 83 ATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALT--------------------------DTAAIDRRAQALALLQKE 136 (294)
T ss_pred ccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccc--------------------------cchhHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999987521 112348899999999988
Q ss_pred hccCCcEEEEEEcCCcCcc--cccChhhHhh----hccEeEEecccCCCC
Q psy11626 363 FRAENFLLSASVLPHVNYT--VYFDVPSITQ----HLDMITLHAYDFRTP 406 (596)
Q Consensus 363 l~~~~~~Ls~av~~~~~~~--~~~d~~~i~~----~vD~i~vM~YD~~~~ 406 (596)
+. ++.||+++|..+... ..+++-+.++ .+|+||||+|||+++
T Consensus 137 ~p--~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 137 YP--DLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred CC--CcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeeeeecCCCC
Confidence 84 788999888654322 4567888888 999999999999875
No 28
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=99.16 E-value=5.4e-11 Score=125.00 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=77.9
Q ss_pred HHHH-HHHHHHHHHh--hhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCC
Q psy11626 189 EHFT-LLIREMKAAF--RAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFR 265 (596)
Q Consensus 189 ~~~~-~ll~~Lr~~l--~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~ 265 (596)
..|. +|-++|++.- ..++++||+++++.......++++++++++|+|||||||||
T Consensus 155 ~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~~~l~~~vD~vnlMtYD~~---------------------- 212 (322)
T cd06548 155 TLLLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEVAEIAKYLDFINLMTYDFH---------------------- 212 (322)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCHHHHhhcCCEEEEEEeecc----------------------
Confidence 4444 4445565532 23568999999988776667788888888888888888876
Q ss_pred CCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 266 TPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 266 g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
|+|. ..+|+++|++...........++..++.+.+.|++.-||..+.|.
T Consensus 213 g~w~--~~~g~~spL~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~ 261 (322)
T cd06548 213 GAWS--NTTGHHSNLYASPADPPGGYSVDAAVNYYLSAGVPPEKLVLGVPF 261 (322)
T ss_pred CCCC--CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEEecc
Confidence 4433 357888998755443344567999999999999999999999997
No 29
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.09 E-value=2.7e-10 Score=119.56 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHhhhcCcEEEEEecC--CcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCC
Q psy11626 188 REHFTLLIREMKAAFRAENFLLSASVLP--HVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFR 265 (596)
Q Consensus 188 ~~~~~~ll~~Lr~~l~~~~~~ls~av~~--~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~ 265 (596)
.+-+.+|-++|++.=..--..+...... ...+...+|++++++++|+|||||||+|+
T Consensus 133 ~~~l~el~~~l~~~~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~--------------------- 191 (318)
T cd02876 133 IQLVIHLGETLHSANLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSS--------------------- 191 (318)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCC---------------------
Confidence 4555666677765422223444444433 23344568999999999999999999863
Q ss_pred CCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhC-CCccceeeecCcccCCccccccccceecc
Q psy11626 266 TPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYG-FNGLDLAWEFPVVTEKHESYTLGSIWHKI 333 (596)
Q Consensus 266 g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g-~dGi~ld~e~p~~~~~~~~~~~~~~~~~~ 333 (596)
+ ..+|+++|+. ++++.++.+.+.| ++.-||.++.|. ||+.|...
T Consensus 192 -~----~~~g~~apl~----------~v~~~v~~~~~~~~vp~~KlvlGip~---------YG~~w~~~ 236 (318)
T cd02876 192 -P----QRPGPNAPLS----------WVRSCLELLLPESGKKRAKILLGLNF---------YGNDYTLP 236 (318)
T ss_pred -C----CCCCCCCCcH----------HHHHHHHHHHhcCCCCHHHeEEeccc---------cccccccC
Confidence 1 4578888873 6999999999987 999999999997 77888654
No 30
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.07 E-value=6.3e-10 Score=118.88 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=60.6
Q ss_pred ccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCChH--HHHHHHHHHHHH
Q psy11626 222 YFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPK--YRKSFIETTVAA 299 (596)
Q Consensus 222 ~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~--~r~~~i~~~i~~ 299 (596)
.+|++++.+++|+|||||||+|+ +| ...+|+++|++....+. .....++..+++
T Consensus 170 ~~d~~~l~~~vD~v~vmtYD~~~----------------------~~--~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~ 225 (362)
T cd02872 170 AYDIPEISKYLDFINVMTYDFHG----------------------SW--EGVTGHNSPLYAGSADTGDQKYLNVDYAIKY 225 (362)
T ss_pred cCCHHHHhhhcceEEEecccCCC----------------------CC--CCCCCCCCCCCCCCCCccccccccHHHHHHH
Confidence 46888888888888888888763 32 23578888886554332 234579999999
Q ss_pred HHHhCCCccceeeecCcccCCccccccccceeccc
Q psy11626 300 LKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIK 334 (596)
Q Consensus 300 ~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~ 334 (596)
+.+.|++.-||.++.|. ||+.|+...
T Consensus 226 ~~~~gvp~~KlvlGlp~---------YG~~~~~~~ 251 (362)
T cd02872 226 WLSKGAPPEKLVLGIPT---------YGRSFTLAS 251 (362)
T ss_pred HHHcCCCHHHeEecccc---------ccceeeecC
Confidence 99999999999999997 677777643
No 31
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.05 E-value=5.7e-10 Score=118.30 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCC
Q psy11626 188 REHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTP 267 (596)
Q Consensus 188 ~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~ 267 (596)
..-+.+|-++|++.+ +||+++|+.......||++++++++|+|||||||||+ +
T Consensus 138 ~~ll~elr~~l~~~~-----~ls~a~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g----------------------~ 190 (345)
T cd02878 138 LEFLKLLKSKLPSGK-----SLSIAAPASYWYLKGFPIKDMAKYVDYIVYMTYDLHG----------------------Q 190 (345)
T ss_pred HHHHHHHHHHhCcCc-----EEEEEcCCChhhhcCCcHHHHHhhCcEEEEEeecccC----------------------C
Confidence 344455556677655 5899998876666678999999999999998888764 3
Q ss_pred CCCCCCCCCCCC---cccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccc
Q psy11626 268 QRNPKEADYSAP---LHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKK 335 (596)
Q Consensus 268 ~~~~~~~~~~ap---~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~ 335 (596)
|..+ +++++| .............+++.++.+.+.|++.-||..+.|. ||+.|+....
T Consensus 191 w~~~--~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~~~Gvp~~KlvlGip~---------YGr~~~l~~~ 250 (345)
T cd02878 191 WDYG--NKWASPGCPAGNCLRSHVNKTETLDALSMITKAGVPSNKVVVGVAS---------YGRSFKMADP 250 (345)
T ss_pred cCcc--CCcCCCCCCcccccccCCCchhHHHHHHHHHHcCCCHHHeEEeecc---------ccceeeccCC
Confidence 3211 111111 1000000011234778889999999999999999997 7888876533
No 32
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.2e-09 Score=114.28 Aligned_cols=68 Identities=22% Similarity=0.565 Sum_probs=58.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHH
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 361 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~ 361 (596)
+..+++.|+.|++++|+++++++|||||||||||.+.+.+ ++...+.++++|+.||+|||+
T Consensus 145 ~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~-------------------~~~~~~~d~~ny~~Ll~eLR~ 205 (441)
T COG3325 145 MAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDA-------------------GNCGRPKDKANYVLLLQELRK 205 (441)
T ss_pred hhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCC-------------------CCCCCcccHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999876543 333568899999999999999
Q ss_pred HhccCCc
Q psy11626 362 AFRAENF 368 (596)
Q Consensus 362 ~l~~~~~ 368 (596)
+|+..+.
T Consensus 206 ~LD~a~~ 212 (441)
T COG3325 206 KLDKAGV 212 (441)
T ss_pred HHhhccc
Confidence 9997653
No 33
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=98.98 E-value=1.9e-09 Score=114.72 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=54.3
Q ss_pred ccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHH
Q psy11626 222 YFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALK 301 (596)
Q Consensus 222 ~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~ 301 (596)
.||++++++++|+|||||||+|+ +.|.++..+|+++|+ .+++..++.+.
T Consensus 169 ~yd~~~l~~~vD~v~lMtYD~h~---------------------~~w~~~~~~g~~ap~----------~~v~~~v~~~~ 217 (358)
T cd02875 169 CYDYTGIADASDFLVVMDYDEQS---------------------QIWGKECIAGANSPY----------SQTLSGYNNFT 217 (358)
T ss_pred ccCHHHHHhhCCEeeEEeecccC---------------------CCCCCCCCCCCCCCc----------hhHHHHHHHHH
Confidence 47899999999999999988763 112223456777775 35777788888
Q ss_pred HhCCCccceeeecCcccCCccccccccceec
Q psy11626 302 KYGFNGLDLAWEFPVVTEKHESYTLGSIWHK 332 (596)
Q Consensus 302 ~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~ 332 (596)
+.|++.-||.++.|. ||+.|..
T Consensus 218 ~~gvp~~KLvLGip~---------YGr~w~~ 239 (358)
T cd02875 218 KLGIDPKKLVMGLPW---------YGYDYPC 239 (358)
T ss_pred HcCCCHHHeEEEeCC---------CCCceeC
Confidence 899999999999997 7887863
No 34
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=98.88 E-value=2.9e-09 Score=110.71 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=60.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHH
Q psy11626 281 HFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMK 360 (596)
Q Consensus 281 ~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr 360 (596)
.++++++.|++||++++++++++|||||+||||++. ++++.+|+.||+|||
T Consensus 81 ~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~-----------------------------~~d~~~~~~fl~eL~ 131 (298)
T cd06549 81 RLLADPSARAKFIANIAAYLERNQADGIVLDFEELP-----------------------------ADDLPKYVAFLSELR 131 (298)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC-----------------------------hhHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999863 458899999999999
Q ss_pred HHhccCCcEEEEEEc
Q psy11626 361 AAFRAENFLLSASVL 375 (596)
Q Consensus 361 ~~l~~~~~~Ls~av~ 375 (596)
++|++.+++|+++|+
T Consensus 132 ~~l~~~~~~lsv~v~ 146 (298)
T cd06549 132 RRLPAQGKQLTVTVP 146 (298)
T ss_pred HHhhhcCcEEEEEec
Confidence 999999999999875
No 35
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=98.84 E-value=1.9e-08 Score=102.14 Aligned_cols=64 Identities=31% Similarity=0.531 Sum_probs=58.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHH
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 361 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~ 361 (596)
++++++.|++|+++++.+++++++|||+||||+|.. .+.+|..|+++||+
T Consensus 77 ~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~------------------------------~~~~~~~fv~~Lr~ 126 (253)
T cd06545 77 ALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV------------------------------TFGDYLVFIRALYA 126 (253)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc------------------------------cHhHHHHHHHHHHH
Confidence 678999999999999999999999999999999852 16799999999999
Q ss_pred HhccCCcEEEEEEc
Q psy11626 362 AFRAENFLLSASVL 375 (596)
Q Consensus 362 ~l~~~~~~Ls~av~ 375 (596)
+|++.++.|+++++
T Consensus 127 ~l~~~~~~lt~av~ 140 (253)
T cd06545 127 ALKKEGKLLTAAVS 140 (253)
T ss_pred HHhhcCcEEEEEcc
Confidence 99998999998875
No 36
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=98.83 E-value=1.1e-08 Score=106.44 Aligned_cols=69 Identities=41% Similarity=0.756 Sum_probs=61.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHH
Q psy11626 281 HFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMK 360 (596)
Q Consensus 281 ~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr 360 (596)
.++++++.|++||++++++++++|||||+||||+|.. ++|+.+|+.||+|||
T Consensus 85 ~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~----------------------------~~d~~n~~~ll~elr 136 (299)
T cd02879 85 AMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSS----------------------------QVEMENFGKLLEEWR 136 (299)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCC----------------------------hhHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999852 358999999999999
Q ss_pred HHhcc-------CCcEEEEEEcCC
Q psy11626 361 AAFRA-------ENFLLSASVLPH 377 (596)
Q Consensus 361 ~~l~~-------~~~~Ls~av~~~ 377 (596)
++|+. .+++||+++++.
T Consensus 137 ~~l~~~~~~~~~~~~~ls~av~~~ 160 (299)
T cd02879 137 AAVKDEARSSGRPPLLLTAAVYFS 160 (299)
T ss_pred HHHHHHhhccCCCcEEEEeecccc
Confidence 99983 468999998754
No 37
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=98.79 E-value=3e-08 Score=100.30 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhc
Q psy11626 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 364 (596)
Q Consensus 285 ~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~ 364 (596)
.+..|++|+++++.++++|||||||||||+|. .++.+|+.|++|||++|+
T Consensus 94 ~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~------------------------------~d~~~f~~ll~~l~~~l~ 143 (253)
T cd06544 94 VDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP------------------------------ADPDTFVECIGQLITELK 143 (253)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCceeeecccCC------------------------------cCHHHHHHHHHHHHHHhh
Confidence 34556778999999999999999999999973 367999999999999999
Q ss_pred cCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCC
Q psy11626 365 AENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVE 444 (596)
Q Consensus 365 ~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp 444 (596)
+.++++.+++.|.......+.++.+.+++|+|++|+||+++.+... . ..........|. .++|
T Consensus 144 ~~~~lt~a~vap~~~~~~~~y~~~~~~~~d~id~~~~qfy~~~~~~------~----------~~~~~~~~~~~~-~~~p 206 (253)
T cd06544 144 NNGVIKVASIAPSEDAEQSHYLALYNAYGDYIDYVNYQFYNYGVPT------T----------VAKYVEFYDEVA-NNYP 206 (253)
T ss_pred hcCCeEEEEecCCccccccccHHHHHHhhCceeEEEhhhhCCCCCC------C----------HHHHHHHHHHHH-hCCC
Confidence 9887777777776554133458889999999999999999875410 0 001223445553 5699
Q ss_pred CCcEEEeeecceeee
Q psy11626 445 LQKLVLGIPTFGRSW 459 (596)
Q Consensus 445 ~~KLvlGvp~YG~~~ 459 (596)
++||++|+|++++.|
T Consensus 207 ~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 207 GKKVLASFSTDGEDG 221 (253)
T ss_pred cccEEEEEecCCCcc
Confidence 999999999999755
No 38
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=98.72 E-value=2.2e-08 Score=105.70 Aligned_cols=116 Identities=23% Similarity=0.327 Sum_probs=87.0
Q ss_pred hHHHHH-HHHHHHHHhhhc-CcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCC
Q psy11626 188 REHFTL-LIREMKAAFRAE-NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFR 265 (596)
Q Consensus 188 ~~~~~~-ll~~Lr~~l~~~-~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~ 265 (596)
-..|++ |-++|++...+. +++||+++|+...+...++++.+.+++|+|++|+||++.
T Consensus 138 ~~~~l~~L~~~l~~~~~~~~~~~ls~a~p~~~~~~~~~~~~~l~~~vD~v~~m~yD~~~--------------------- 196 (343)
T PF00704_consen 138 YTAFLKELRKALKRANRSGKGYILSVAVPPSPDYYDKYDYKELAQYVDYVNLMTYDYHG--------------------- 196 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTSEEEEEEECSHHHHTTHHHHHHHTTSSEEEEETTSSSS---------------------
T ss_pred hhhhhhhhhhhhcccccccceeEEeeccccccccccccccccccccccccccccccCCC---------------------
Confidence 455655 445899887664 899999999887776666999999999999999998763
Q ss_pred CCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccc
Q psy11626 266 TPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 337 (596)
Q Consensus 266 g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~ 337 (596)
+|.. .+++++|++....+ .....++..++.+.+.|++--||.++.|. +|+.|.......
T Consensus 197 -~~~~--~~~~~~~l~~~~~~-~~~~~~~~~v~~~~~~g~p~~Kl~lglp~---------yg~~~~~~~~~~ 255 (343)
T PF00704_consen 197 -PWSD--VTGPNAPLYDSSWD-SNYYSVDSAVQYWIKAGVPPSKLVLGLPF---------YGRSWTLVNGSP 255 (343)
T ss_dssp -TTSS--BETTSSSSSHTTTS-GTSSSHHHHHHHHHHTTSTGGGEEEEEES---------EEEEEESSSSTT
T ss_pred -Cccc--ccccccccccCCcc-CCCceeeeehhhhccccCChhheeecCCc---------ccccceecCCcC
Confidence 2222 56777777555444 34557899999999999999999999997 566666654433
No 39
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=98.72 E-value=4.1e-08 Score=102.82 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=54.2
Q ss_pred ccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHH
Q psy11626 218 NYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTV 297 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i 297 (596)
.+...+|++++++++|+||||+||+|+ ++ ..+|+++|+ .++++++
T Consensus 155 ~~~~~~~~~~l~~~vD~v~lm~YD~~~----------------------~~---~~~gp~a~~----------~~~~~~~ 199 (313)
T cd02874 155 NWSGAYDYAAIGKIVDFVVLMTYDWHW----------------------RG---GPPGPVAPI----------GWVERVL 199 (313)
T ss_pred ccccccCHHHHHhhCCEEEEEEeccCC----------------------CC---CCCCccCCh----------HHHHHHH
Confidence 445678999999999999999998863 21 234666665 4677888
Q ss_pred HHHHHhCCCccceeeecCcccCCccccccccceecc
Q psy11626 298 AALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKI 333 (596)
Q Consensus 298 ~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~ 333 (596)
+++. .|++.-||..+.|. ||+.|...
T Consensus 200 ~~~~-~gvp~~KlvlGip~---------YG~~w~~~ 225 (313)
T cd02874 200 QYAV-TQIPREKILLGIPL---------YGYDWTLP 225 (313)
T ss_pred HHHH-hcCCHHHEEEeecc---------cccccccC
Confidence 8776 78999999999997 67777643
No 40
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=98.66 E-value=3.2e-08 Score=104.49 Aligned_cols=69 Identities=41% Similarity=0.820 Sum_probs=60.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHH
Q psy11626 281 HFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMK 360 (596)
Q Consensus 281 ~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr 360 (596)
.++++++.|++|++++++++++++||||+||||+|... ..++.+|+.||++||
T Consensus 84 ~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~---------------------------~~d~~~~~~ll~~lr 136 (334)
T smart00636 84 SMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGAR---------------------------GDDRENYTALLKELR 136 (334)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCC---------------------------ccHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999998531 146889999999999
Q ss_pred HHhcc-----CCcEEEEEEcC
Q psy11626 361 AAFRA-----ENFLLSASVLP 376 (596)
Q Consensus 361 ~~l~~-----~~~~Ls~av~~ 376 (596)
++|++ .+++||+++++
T Consensus 137 ~~l~~~~~~~~~~~lsi~v~~ 157 (334)
T smart00636 137 EALDKEGAEGKGYLLTIAVPA 157 (334)
T ss_pred HHHHHhcccCCceEEEEEecC
Confidence 99996 48999999975
No 41
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=98.54 E-value=6e-07 Score=91.22 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=91.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHH
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAA 362 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~ 362 (596)
.++++.|++|++++++++++++|||+|||||+|. +..+|..|++|||++
T Consensus 91 a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~-------------------------------~~~~~~~ll~~Lr~~ 139 (256)
T cd06546 91 DDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM-------------------------------SLDGIIRLIDRLRSD 139 (256)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC-------------------------------CHhHHHHHHHHHHHH
Confidence 3678899999999999999999999999999984 246899999999999
Q ss_pred hccCCcEEEEEEcCC-----cCcccccChhhHhh----hccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy11626 363 FRAENFLLSASVLPH-----VNYTVYFDVPSITQ----HLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANA 433 (596)
Q Consensus 363 l~~~~~~Ls~av~~~-----~~~~~~~d~~~i~~----~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~ 433 (596)
++. ++.||+|..+. ......+++.++.+ ++||+|+|-||.++.... ..
T Consensus 140 ~~~-~~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~~----------------------~~ 196 (256)
T cd06546 140 FGP-DFIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMSS----------------------PS 196 (256)
T ss_pred hCC-CcEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCccC----------------------HH
Confidence 964 58888875432 12234567777754 999999999997654210 12
Q ss_pred HHHHHHHcCCCCCcEEEeeec
Q psy11626 434 MVRWFIEHGVELQKLVLGIPT 454 (596)
Q Consensus 434 ~v~~~~~~Gvp~~KLvlGvp~ 454 (596)
....|++.++|++||++|+|.
T Consensus 197 ~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 197 DYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred HHHHHHHcCCCcccEEEEEec
Confidence 334466779999999999984
No 42
>KOG2806|consensus
Probab=98.53 E-value=1.4e-07 Score=102.86 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHhhhcCcEEEEEecCCc-ccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCC
Q psy11626 188 REHFTLLIREMKAAFRAENFLLSASVLPHV-NYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRT 266 (596)
Q Consensus 188 ~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~-~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g 266 (596)
++....|.++.+...+...+++++.+++.. .+..+||++++.+++|+||||+||| ||
T Consensus 189 ~elr~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf----------------------~g 246 (432)
T KOG2806|consen 189 QELRSAFARETLKSPDTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDY----------------------YG 246 (432)
T ss_pred HHHHHHHHHHhhccCCccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccc----------------------cC
Confidence 455666666666666555555555555544 4556777777777777777766665 58
Q ss_pred CCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccc
Q psy11626 267 PQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 337 (596)
Q Consensus 267 ~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~ 337 (596)
+|.+|..+|+++|++.......+...++..++++.+.+.+--||+...|. ||+.|++.....
T Consensus 247 pw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~gip~---------yg~~w~~~~~~~ 308 (432)
T KOG2806|consen 247 PWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLALPF---------YGRSWQLLEDSR 308 (432)
T ss_pred CCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEEEec---------ceehhhhcCCcC
Confidence 88888899999999877664455668999999999999999999999997 788888765433
No 43
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=98.46 E-value=8.5e-07 Score=92.83 Aligned_cols=138 Identities=19% Similarity=0.313 Sum_probs=98.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHH
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAA 362 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~ 362 (596)
+++++.|++|+++++.++++++|||||||||+|.... ..++++.+|+.||++||++
T Consensus 89 ~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~------------------------~~~~~~~~~~~~lk~lr~~ 144 (312)
T cd02871 89 LNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPL------------------------NATPVITNLISALKQLKDH 144 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccC------------------------CcHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999986321 1245889999999999999
Q ss_pred hccCCcEEEEEEcCC-cC--------ccccc--ChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q psy11626 363 FRAENFLLSASVLPH-VN--------YTVYF--DVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNA 431 (596)
Q Consensus 363 l~~~~~~Ls~av~~~-~~--------~~~~~--d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv 431 (596)
++. ++.||+|.... .. ....| ...++..++|||+||.||.++.+.-. +... .....+.
T Consensus 145 ~~~-~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~~~-------~~~~---~~~~~~~ 213 (312)
T cd02871 145 YGP-NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGCD-------GQSY---SQGTADF 213 (312)
T ss_pred cCC-CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccccc-------ccCC---ccchhHH
Confidence 975 89999984321 11 11223 36788899999999999988754200 0000 0011123
Q ss_pred HHHHHHHHHcC-----------CCCCcEEEeeecc
Q psy11626 432 NAMVRWFIEHG-----------VELQKLVLGIPTF 455 (596)
Q Consensus 432 ~~~v~~~~~~G-----------vp~~KLvlGvp~Y 455 (596)
..++..++.+| +|++||+||+|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 214 LVALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 34444445555 8999999999974
No 44
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=98.19 E-value=3.7e-06 Score=82.42 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=35.8
Q ss_pred CCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCccce
Q psy11626 245 FDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDL 310 (596)
Q Consensus 245 ~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~l 310 (596)
++..++.+++||+++|+||+--+ .|++ .+...+++++++++.|+-+
T Consensus 159 ~~~~~l~~~vD~v~vm~Ydl~~g----------~~~~----------s~~~k~~~~~~~~~gGv~~ 204 (210)
T cd00598 159 YDVPAIGDYVDFVNVMTYDLVLG----------VPFY----------SLGAKAKYAKQKGLGGVMI 204 (210)
T ss_pred CCHHHHHhhCCEEEEeeeccccc----------chhh----------hHHHHHHHHHHcCCceEEE
Confidence 67788899999999999994311 1222 8889999999999999854
No 45
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=97.95 E-value=2.4e-05 Score=82.43 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHHhhhCCCceEEEEEc-CCCCCCChhhhhhhcCC-HHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccccccc
Q psy11626 90 ITALKTFQPNLNIMLSVG-GFEDDDDKEKYLEVLDD-PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 167 (596)
Q Consensus 90 ~~~lk~~~p~lkvllsiG-G~~~~~~s~~f~~~~~~-~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~ 167 (596)
.+..+++| |||||-.|- -|... ...+..++.+ ++.+.++|+.|+++++.|||||+-||+|.....
T Consensus 51 ~idaAHkn-GV~Vlgti~~e~~~~--~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~---------- 117 (339)
T cd06547 51 WINAAHRN-GVPVLGTFIFEWTGQ--VEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGD---------- 117 (339)
T ss_pred HHHHHHhc-CCeEEEEEEecCCCc--hHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCc----------
Confidence 34445554 999997664 23221 4567788888 999999999999999999999999999987521
Q ss_pred chhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhc
Q psy11626 168 IWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE 205 (596)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~ 205 (596)
+++++++..|+++|+++++++
T Consensus 118 -----------------~~~~~~l~~F~~~L~~~~~~~ 138 (339)
T cd06547 118 -----------------AEKAKRLIAFLRYLKAKLHEN 138 (339)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhhc
Confidence 137899999999999999975
No 46
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=4.8e-05 Score=74.54 Aligned_cols=133 Identities=14% Similarity=0.373 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCC-
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAEN- 367 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~- 367 (596)
.+.|+.+|++++++|||||+|||.|-....- ...+.-.-+.+|.+++..+..|
T Consensus 119 E~~fv~eiirlietyGFDGLDiDLEq~ai~~--------------------------~dnq~v~p~alk~vk~hyk~~Gk 172 (332)
T COG3469 119 EQAFVNEIIRLIETYGFDGLDIDLEQSAILA--------------------------ADNQTVIPAALKAVKDHYKNQGK 172 (332)
T ss_pred HHHHHHHHHHHHHHhCCCccccchhhhhhhh--------------------------cCCeeehHHHHHHHHHHHHhcCC
Confidence 6789999999999999999999999532110 0112234457777777777765
Q ss_pred -cEEEEEEc-CCc-Cccccc-ChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---
Q psy11626 368 -FLLSASVL-PHV-NYTVYF-DVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIE--- 440 (596)
Q Consensus 368 -~~Ls~av~-~~~-~~~~~~-d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~--- 440 (596)
+.||+|-. |.. ....+. -+.++..+.|||+..-|+.-|.-. ..+..++|.... .-.+.+..-+++.
T Consensus 173 ~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~--w~~~~nawi~q~-----nd~~kesfly~~~~sl 245 (332)
T COG3469 173 NFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGN--WVTESNAWIAQN-----NDMVKESFLYYLTFSL 245 (332)
T ss_pred ceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCC--CcCccccccccc-----cHHHHHhHHHHhhhhh
Confidence 55666522 111 111222 266889999999999999776421 123334444322 1123333333332
Q ss_pred -------cCCCCCcEEEeeec
Q psy11626 441 -------HGVELQKLVLGIPT 454 (596)
Q Consensus 441 -------~Gvp~~KLvlGvp~ 454 (596)
..+|.+|+++|+|.
T Consensus 246 anGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 246 ANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred hcCcccceecccceeEEecCC
Confidence 23789999999974
No 47
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=97.85 E-value=2.7e-05 Score=81.98 Aligned_cols=69 Identities=19% Similarity=0.411 Sum_probs=63.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHH
Q psy11626 281 HFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMK 360 (596)
Q Consensus 281 ~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr 360 (596)
.+|.++..+++++++++..++++|+.|+.+|+|.- .+.|++.|..|++++|
T Consensus 184 ~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v-----------------------------~~~DR~~yt~flR~~r 234 (423)
T COG3858 184 LLLNNETAKNRLINNIITLLDARGYRGVNIDFENV-----------------------------GPGDRELYTDFLRQVR 234 (423)
T ss_pred HHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhC-----------------------------CHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999953 3569999999999999
Q ss_pred HHhccCCcEEEEEEcCCc
Q psy11626 361 AAFRAENFLLSASVLPHV 378 (596)
Q Consensus 361 ~~l~~~~~~Ls~av~~~~ 378 (596)
.+|++.|+.+++||+|..
T Consensus 235 ~~l~~~G~~~siAvaakt 252 (423)
T COG3858 235 DALHSGGYTVSIAVAAKT 252 (423)
T ss_pred HHhccCCeEEEEEecCCC
Confidence 999999999999999864
No 48
>KOG4701|consensus
Probab=97.76 E-value=0.0015 Score=67.48 Aligned_cols=191 Identities=15% Similarity=0.203 Sum_probs=111.0
Q ss_pred cccEEEEEEEEec-CCCceEEecCCccccccccch--hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHH
Q psy11626 50 MCTHLVYGFAGIS-DSGDYHIKSLDKELDTDKNKG--KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPK 126 (596)
Q Consensus 50 ~~Thviyafa~v~-~~g~~~~~~~~~~~d~~~~~~--~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~ 126 (596)
.+..|+++|+.-- -+|+..+...+.-.|.+.... -..+..-++..+. .|+|||||+||..++ ..+.+++
T Consensus 52 ~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS-~GiKVlLSLGG~~Gn-------Ys~~~d~ 123 (568)
T KOG4701|consen 52 TYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQS-NGIKVLLSLGGYNGN-------YSLNNDD 123 (568)
T ss_pred ccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHh-cCeEEEEeccCcccc-------eeeccch
Confidence 4667888886322 234545444433333221000 0122333333333 399999999998873 5677788
Q ss_pred HHHHHHHHHHHHHHH----------hCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHH
Q psy11626 127 YRKSFIETTVAALKK----------YGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIR 196 (596)
Q Consensus 127 ~r~~f~~si~~~l~~----------~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~ 196 (596)
..+.|++.+-+..-. -=+||+|||-|--. ...+..|-+
T Consensus 124 dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g~--------------------------------~~~ysaLA~ 171 (568)
T KOG4701|consen 124 DATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKGT--------------------------------NTAYSALAK 171 (568)
T ss_pred hHHHHHHHHHHHhcCCccccCcccchhccceeeeeecCC--------------------------------cchHHHHHH
Confidence 888999988765432 12899999999532 267889999
Q ss_pred HHHHHhhhc--CcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCC
Q psy11626 197 EMKAAFRAE--NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEA 274 (596)
Q Consensus 197 ~Lr~~l~~~--~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~ 274 (596)
.||..|... .+.|+.| |.-++.... +++.|. ..-+||+.++-|+-..
T Consensus 172 ~L~~~Fa~~~r~yYLsaA--PQCP~PD~~----~G~aL~-----------------~~~fDf~~IQFYNN~~-------- 220 (568)
T KOG4701|consen 172 RLLEIFASDPRRYYLSAA--PQCPVPDHT----LGKALS-----------------ENSFDFLSIQFYNNST-------- 220 (568)
T ss_pred HHHHHHccCCceEEeccC--CCCCCCchh----hhhhhh-----------------ccccceEEEEeecCCC--------
Confidence 999999765 4555554 332211100 011000 1234555666655420
Q ss_pred CCCCCcccCC-ChHHHHHHHHHHHHHHHHhCC-CccceeeecCcccC
Q psy11626 275 DYSAPLHFLD-DPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTE 319 (596)
Q Consensus 275 ~~~ap~~~~~-~~~~r~~~i~~~i~~~~~~g~-dGi~ld~e~p~~~~ 319 (596)
++ ....|+...+..+++.+..-. ..++|-.+.|..+.
T Consensus 221 --------CS~SsG~~Q~~fDsW~~ya~~~a~nKn~~lFLGLPg~~~ 259 (568)
T KOG4701|consen 221 --------CSGSSGSRQSTFDAWVEYAEDSAYNKNTSLFLGLPGHQN 259 (568)
T ss_pred --------cccccCcccccHHHHHHHHhhhcccccceEEeeccCCcc
Confidence 01 113467778888888887766 44778888887554
No 49
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=97.46 E-value=0.00056 Score=70.36 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=85.6
Q ss_pred CChHHHHHHHHHHHHHHH------------HhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHH
Q psy11626 284 DDPKYRKSFIETTVAALK------------KYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREH 351 (596)
Q Consensus 284 ~~~~~r~~~i~~~i~~~~------------~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~ 351 (596)
++++.|+.|++++..++. ++++||+|||||+|.. .+
T Consensus 89 ~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~--------------------------------~~ 136 (280)
T cd02877 89 SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP--------------------------------EN 136 (280)
T ss_pred CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc--------------------------------cC
Confidence 678899999999987752 5779999999998751 47
Q ss_pred HHHHHHHHHHHhcc---CCcEEEEEEcCCcCcccccChhhHhh-hccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11626 352 FTLLIREMKAAFRA---ENFLLSASVLPHVNYTVYFDVPSITQ-HLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVP 427 (596)
Q Consensus 352 f~~flkelr~~l~~---~~~~Ls~av~~~~~~~~~~d~~~i~~-~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~ 427 (596)
|..|+++||+.+++ +++.||+|... + ....+....|.. ++|||+||.||..+-- .. .. .
T Consensus 137 ~~~l~~~LR~~~~~~~~~~~~LTaAPq~-~-~~d~~~~~~i~~~~~D~i~vqfYn~~~c~-----~~-----~~-----~ 199 (280)
T cd02877 137 YDALAKRLRSLFASDPSKKYYLTAAPQC-P-YPDASLGDAIATGLFDFIFVQFYNNPCCS-----YA-----SG-----N 199 (280)
T ss_pred HHHHHHHHHHHhhcccCCceEEEecccc-C-CcchhHHHHHccCccCEEEEEEecCcccc-----cc-----cc-----c
Confidence 89999999999986 46899988433 1 122234455654 8999999999964311 00 00 0
Q ss_pred CCCHHHHHHHHHHcCCCC---CcEEEeeecc
Q psy11626 428 HQNANAMVRWFIEHGVEL---QKLVLGIPTF 455 (596)
Q Consensus 428 ~~sv~~~v~~~~~~Gvp~---~KLvlGvp~Y 455 (596)
........+.|... ++. .||+||||..
T Consensus 200 ~~~~~~~~~~w~~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 200 ASGFNFNWDTWTSW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred cchhhhHHHHHHHh-cccCCCceEEEecccC
Confidence 11234556677665 565 8999999864
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.13 E-value=0.0024 Score=66.81 Aligned_cols=150 Identities=17% Similarity=0.273 Sum_probs=94.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCcccee-eecCcccCCccccccccceecccccccCCCCCCCccC-------hHHHHHH
Q psy11626 284 DDPKYRKSFIETTVAALKKYGFNGLDLA-WEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH-------REHFTLL 355 (596)
Q Consensus 284 ~~~~~r~~~i~~~i~~~~~~g~dGi~ld-~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d-------~~~f~~f 355 (596)
..|+.|+..++-+.+++++|.+|||.|| .-||... .| +...+ .....+-+|......++| +.+...|
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~-~g--~~~~~--~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~ 208 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPS-FG--YDFPD--VAAYEKYTGKDPFSSPEDDAWTQWRRDNINNF 208 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEeccccccccc-CC--CCCcc--HHHHHHhcCcCCCCCccchHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 4465321 11 01100 001222333222223455 7899999
Q ss_pred HHHHHHHhccCC--cEEEEEEcCCcC---cccccChhhHh--hhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11626 356 IREMKAAFRAEN--FLLSASVLPHVN---YTVYFDVPSIT--QHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPH 428 (596)
Q Consensus 356 lkelr~~l~~~~--~~Ls~av~~~~~---~~~~~d~~~i~--~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~ 428 (596)
+++|++++++.+ ..++++..+..+ ...+-|...-. .++|||..|.|-..-+. . .
T Consensus 209 V~~i~~~ik~~kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~-------~------------~ 269 (311)
T PF02638_consen 209 VKRIYDAIKAIKPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSH-------F------------T 269 (311)
T ss_pred HHHHHHHHHHhCCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccch-------h------------H
Confidence 999999999875 555554433221 12223444443 57999999999531110 0 1
Q ss_pred CCHHHHHHHHHHcCCCC-CcEEEeeeccee
Q psy11626 429 QNANAMVRWFIEHGVEL-QKLVLGIPTFGR 457 (596)
Q Consensus 429 ~sv~~~v~~~~~~Gvp~-~KLvlGvp~YG~ 457 (596)
...+..+..|.+.-.+. -+|.+|+.+|-.
T Consensus 270 ~~~~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 270 APYEQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 23678888888765553 489999998864
No 51
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.13 E-value=0.001 Score=69.50 Aligned_cols=85 Identities=14% Similarity=0.220 Sum_probs=58.7
Q ss_pred HHHHhhhCCCceEEEEEc-CCCCCCChhhhhhhcC-CHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccccccc
Q psy11626 90 ITALKTFQPNLNIMLSVG-GFEDDDDKEKYLEVLD-DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 167 (596)
Q Consensus 90 ~~~lk~~~p~lkvllsiG-G~~~~~~s~~f~~~~~-~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~ 167 (596)
.+..+++| |||||-.|- .|+.. ...+..++. +++....+|+.++++++-|||||.-|++|.+....
T Consensus 47 widaAHrn-GV~vLGTiife~~~~--~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~--------- 114 (311)
T PF03644_consen 47 WIDAAHRN-GVKVLGTIIFEWGGG--AEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGP--------- 114 (311)
T ss_dssp HHHHHHHT-T--EEEEEEEEEE----HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTG---------
T ss_pred hHHHHHhc-CceEEEEEEecCCch--HHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCch---------
Confidence 34556665 999983332 33332 466778887 88888999999999999999999999999875431
Q ss_pred chhcccccccCCCCCCCccchHHHHHHHHHHHHHhhh
Q psy11626 168 IWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA 204 (596)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~ 204 (596)
.+.+++..|+++||++++.
T Consensus 115 ------------------~~~~~l~~F~~~l~~~~~~ 133 (311)
T PF03644_consen 115 ------------------EDAENLIDFLKYLRKEAHE 133 (311)
T ss_dssp ------------------GGHHHHHHHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHHHhhc
Confidence 2579999999999999986
No 52
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=96.95 E-value=0.01 Score=56.34 Aligned_cols=83 Identities=12% Similarity=0.241 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhC--CCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhc
Q psy11626 287 KYRKSFIETTVAALKKYG--FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 364 (596)
Q Consensus 287 ~~r~~~i~~~i~~~~~~g--~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~ 364 (596)
.....-|.+.+.-++..| +.|+.|||..+. .....|..|+++||+.|.
T Consensus 23 ~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t------------------------------~~L~~Y~~fL~~LR~~LP 72 (181)
T PF11340_consen 23 EQVLARILQLLQRWQAAGNNVAGIQIDFDAAT------------------------------SRLPAYAQFLQQLRQRLP 72 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEecCccc------------------------------cchHHHHHHHHHHHHhCC
Confidence 334444555566666666 699999999654 356899999999999999
Q ss_pred cCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecc
Q psy11626 365 AENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401 (596)
Q Consensus 365 ~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~Y 401 (596)
. ++.||++.-+.-..... -++.+...+|.+.+|+|
T Consensus 73 ~-~~~LSIT~L~dW~~~~~-~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 73 P-DYRLSITALPDWLSSPD-WLNALPGVVDELVLQVY 107 (181)
T ss_pred C-CceEeeEEehhhhcCch-hhhhHhhcCCeeEEEee
Confidence 7 78898876554322221 47788999999999999
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.83 E-value=0.0029 Score=66.20 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeeee-ccCCCcCccccccccccchhcccccccCCCCCCCccc-------hHHHHHH
Q psy11626 123 DDPKYRKSFIETTVAALKKYGFNGLDLA-WEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH-------REHFTLL 194 (596)
Q Consensus 123 ~~~~~r~~f~~si~~~l~~~gfDGvdiD-wE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d-------~~~~~~l 194 (596)
..|+.|+-.++-+.+++++|.+|||.|| .-||.....- .-..-..+++.. |......++| +++...|
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~----~~~~~~~y~~~~-g~~~~~~~~d~~W~~WRr~~I~~~ 208 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGY----DFPDVAAYEKYT-GKDPFSSPEDDAWTQWRRDNINNF 208 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCC----CCccHHHHHHhc-CcCCCCCccchHHHHHHHHHHHHH
Confidence 4678899999999999999999999999 5565432100 000011222221 2111122345 7899999
Q ss_pred HHHHHHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccc--cccccccccccccC
Q psy11626 195 IREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSI--TQHLDMITLHAYDF 264 (596)
Q Consensus 195 l~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~--~~~~d~~~~~~yd~ 264 (596)
+++|++++++.+..+.++++|...+. .+|+-.+.|.... ..++|++.+|.|--
T Consensus 209 V~~i~~~ik~~kP~v~~sisp~g~~~-----------------~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 209 VKRIYDAIKAIKPWVKFSISPFGIWN-----------------SAYDDYYQDWRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHHHHHHHHhCCCCeEEEEeecchh-----------------hhhhheeccHHHHHhcCCccEEEeeeccc
Confidence 99999999986655555554433221 2344344444433 35778888887744
No 54
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=96.64 E-value=0.0086 Score=63.32 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=86.1
Q ss_pred ccCCC-hHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHH
Q psy11626 281 HFLDD-PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREM 359 (596)
Q Consensus 281 ~~~~~-~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkel 359 (596)
.++.+ +..+..+++.++++++.|||||.-||+|.... .++++.++..|+++|
T Consensus 79 ~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~---------------------------~~~~~~~l~~F~~~L 131 (339)
T cd06547 79 DFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELG---------------------------DAEKAKRLIAFLRYL 131 (339)
T ss_pred HHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCC---------------------------cHHHHHHHHHHHHHH
Confidence 35666 88899999999999999999999999996430 246889999999999
Q ss_pred HHHhccCC--cEE----EEEEcCCcC---cccccChhhHhhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11626 360 KAAFRAEN--FLL----SASVLPHVN---YTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQN 430 (596)
Q Consensus 360 r~~l~~~~--~~L----s~av~~~~~---~~~~~d~~~i~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~s 430 (596)
++++++.. .++ +++...... .....+.+-+ +.+|-|.+ .|. |.. .+
T Consensus 132 ~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl-NY~----W~~-------------------~~ 186 (339)
T cd06547 132 KAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL-NYW----WTE-------------------ES 186 (339)
T ss_pred HHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcceeE-ecC----CCc-------------------ch
Confidence 99999853 322 222211111 1111222222 44553322 221 221 13
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeecceeeee
Q psy11626 431 ANAMVRWFIEHGVELQKLVLGIPTFGRSWL 460 (596)
Q Consensus 431 v~~~v~~~~~~Gvp~~KLvlGvp~YG~~~~ 460 (596)
.+.+++.....|..+.+|-+||=..||...
T Consensus 187 l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 187 LERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred HHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 566677777889999999999999988765
No 55
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=96.21 E-value=0.023 Score=54.04 Aligned_cols=84 Identities=10% Similarity=0.195 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHHHHHh-CCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHh
Q psy11626 124 DPKYRKSFIETTVAALKKY-GFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202 (596)
Q Consensus 124 ~~~~r~~f~~si~~~l~~~-gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l 202 (596)
+++..++..+.+.++-..- ..-||.||+..++.. .+.|..|+++||++|
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t~~------------------------------L~~Y~~fL~~LR~~L 71 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAATSR------------------------------LPAYAQFLQQLRQRL 71 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccccc------------------------------hHHHHHHHHHHHHhC
Confidence 4555566666665665443 589999999977543 689999999999999
Q ss_pred hhcCcEEEEEecCCccccccc-chhhhhcccceeeeecc
Q psy11626 203 RAENFLLSASVLPHVNYTVYF-DVPSITQHLDMITLHAY 240 (596)
Q Consensus 203 ~~~~~~ls~av~~~~~~~~~~-~~~~~~~~~d~i~~m~Y 240 (596)
.+ ++-|||+.-+.- ...- -++++.+.+|.+.+|+|
T Consensus 72 P~-~~~LSIT~L~dW--~~~~~~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 72 PP-DYRLSITALPDW--LSSPDWLNALPGVVDELVLQVY 107 (181)
T ss_pred CC-CceEeeEEehhh--hcCchhhhhHhhcCCeeEEEee
Confidence 96 788998876532 2222 37778888888888888
No 56
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=96.21 E-value=0.27 Score=51.45 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=103.4
Q ss_pred HHHHHHhhhCCCceEE--EEEcCCCCCCChhhhhh-----------------------hcCCHHHHHHHHHHHHHHHHHh
Q psy11626 88 KQITALKTFQPNLNIM--LSVGGFEDDDDKEKYLE-----------------------VLDDPKYRKSFIETTVAALKKY 142 (596)
Q Consensus 88 ~~~~~lk~~~p~lkvl--lsiGG~~~~~~s~~f~~-----------------------~~~~~~~r~~f~~si~~~l~~~ 142 (596)
.++.+||+. +.+|+ +|||-++.. ...|.. -..+++-|+-+.+. ++.+.+.
T Consensus 85 ~~i~~Lk~~--g~~viaYlSvGe~E~~--R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~k 159 (315)
T TIGR01370 85 EEIVRAAAA--GRWPIAYLSIGAAEDY--RFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQ 159 (315)
T ss_pred HHHHHHHhC--CcEEEEEEEchhcccc--chhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHc
Confidence 467778765 77777 899986653 122211 12356677766666 6777888
Q ss_pred CCCeeeeecc----CCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcc
Q psy11626 143 GFNGLDLAWE----FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVN 218 (596)
Q Consensus 143 gfDGvdiDwE----~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~ 218 (596)
|||||.+|.- +....+ ...+...+.+..++++|.+.++++...+-+.+-....
T Consensus 160 GfDGvfLD~lDsy~~~~~~~-----------------------~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~e 216 (315)
T TIGR01370 160 GFDGVYLDLIDAFEYWAENG-----------------------DNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEE 216 (315)
T ss_pred CCCeEeeccchhhhhhcccC-----------------------CcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchh
Confidence 9999999953 211110 0112346788999999977666654333332211111
Q ss_pred cccccchhhhhcccceeeeeccccccCCcccccccccccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHH
Q psy11626 219 YTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVA 298 (596)
Q Consensus 219 ~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~ 298 (596)
.... +-..+.+.+|.|+.-+ +. |+.. -...++.|+.++..+.+
T Consensus 217 il~~-~~g~~~~~idgV~~Es-------------------lf-~~~~----------------~~~~e~dr~~~l~~L~~ 259 (315)
T TIGR01370 217 LLRD-DHGGLAATVSGWAVEE-------------------LF-YYAA----------------NRPTEAERQRRLLALYR 259 (315)
T ss_pred hhhc-cccchhhhceEEEecc-------------------eE-EcCC----------------CCCCHHHHHHHHHHHHH
Confidence 1100 0011334444443311 01 1111 12345667888877777
Q ss_pred HHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEE
Q psy11626 299 ALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLL 370 (596)
Q Consensus 299 ~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~L 370 (596)
+. +.|++-+-||.--|..+ ...-...++++.+..++.|+.=
T Consensus 260 ~~-~~G~~Vl~IDY~~~~~~------------------------------~~~n~~~~~~~~~~~~~~Gf~p 300 (315)
T TIGR01370 260 LW-QQGKFVLTVDYVDDGTK------------------------------TNENPARMKDAAEKARAAGLIP 300 (315)
T ss_pred HH-HCCCcEEEEEecCCccc------------------------------chhhHHHHHHHHHHHHHcCCee
Confidence 65 44999888887644311 1122456778888888888643
No 57
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.78 E-value=0.93 Score=47.42 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccceeee-cCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHh
Q psy11626 285 DPKYRKSFIETTVAALKKYGFNGLDLAWE-FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 363 (596)
Q Consensus 285 ~~~~r~~~i~~~i~~~~~~g~dGi~ld~e-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l 363 (596)
++..++-.++ +.+.+.+.|||.|.+|.= ||. .+..+...|. ..............||+..|+++
T Consensus 119 ~~evw~Y~i~-IA~Eaa~~GFdEIqfDYIRFP~-~~~~~~l~y~-------------~~~~~~~r~~aI~~Fl~~a~~~l 183 (316)
T PF13200_consen 119 SKEVWDYNID-IAKEAAKLGFDEIQFDYIRFPD-EGRLSGLDYS-------------ENDTEESRVDAITDFLAYAREEL 183 (316)
T ss_pred CHHHHHHHHH-HHHHHHHcCCCEEEeeeeecCC-CCcccccccC-------------CCCCcchHHHHHHHHHHHHHHHH
Confidence 5566666666 666666889999999976 887 1111111111 11111113578899999999999
Q ss_pred ccCCcEEEEEEcCCcCc-----ccccChhhHhhhccEeEEecccCCC
Q psy11626 364 RAENFLLSASVLPHVNY-----TVYFDVPSITQHLDMITLHAYDFRT 405 (596)
Q Consensus 364 ~~~~~~Ls~av~~~~~~-----~~~~d~~~i~~~vD~i~vM~YD~~~ 405 (596)
+..+..||+.|.+.... .-+=+++.|++++|+|.-|-|==|-
T Consensus 184 ~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh~ 230 (316)
T PF13200_consen 184 HPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSHY 230 (316)
T ss_pred hHcCCCEEEEecccccccCCCCCcCCCHHHHhhhCCEEEeccccccc
Confidence 99999999999865422 2335799999999999999996553
No 58
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=95.41 E-value=0.036 Score=58.02 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=77.0
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHH
Q psy11626 282 FLD-DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMK 360 (596)
Q Consensus 282 ~~~-~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr 360 (596)
++. ++.....+++.++++++-|||||.-|++|.+... ..+...+..|+++|+
T Consensus 76 ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~---------------------------~~~~~~l~~F~~~l~ 128 (311)
T PF03644_consen 76 LLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSG---------------------------PEDAENLIDFLKYLR 128 (311)
T ss_dssp HT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTT---------------------------GGGHHHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCc---------------------------hhHHHHHHHHHHHHH
Confidence 444 5666678899999999999999999999976421 146789999999999
Q ss_pred HHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEecccC-----CCCCCCCCCCCCCCCCCCCCC-----CC-CCC
Q psy11626 361 AAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF-----RTPQRNPKEADYSAPLHFVYG-----RV-PHQ 429 (596)
Q Consensus 361 ~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~-----~~~~~~~~~~g~~aPL~~~~~-----~~-~~~ 429 (596)
+++++ . .-..||=||- ...|.+ ....++.|.+..++ .. ...
T Consensus 129 ~~~~~-~--------------------------~~~~v~WYDs~t~~G~l~~qn-~Ln~~N~~f~~~~d~iFlNY~W~~~ 180 (311)
T PF03644_consen 129 KEAHE-N--------------------------PGSEVIWYDSVTNSGRLSWQN-ELNDKNKPFFDVCDGIFLNYNWNPD 180 (311)
T ss_dssp HHHHH-T---------------------------T-EEEEES-B-SSSSB---S-SS-TTTGGGBES-SEEEE-S--SHH
T ss_pred HHhhc-C--------------------------CCcEEEEeecCCcCCccchHH-HHHhhCcchhhhcceeeEecCCCcc
Confidence 99885 2 1113333443 122332 23344444443331 11 122
Q ss_pred CHHHHHHHHHHcCCCCCcEEEeeecceee
Q psy11626 430 NANAMVRWFIEHGVELQKLVLGIPTFGRS 458 (596)
Q Consensus 430 sv~~~v~~~~~~Gvp~~KLvlGvp~YG~~ 458 (596)
++..+++...+.+.+|.+|-+||=..||.
T Consensus 181 ~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 181 SLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred cHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 47888999999999999999999999997
No 59
>KOG2091|consensus
Probab=95.33 E-value=0.042 Score=55.99 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=32.3
Q ss_pred hHHHH-HHHHHHHHHhhhcCcEEEEEec-CCcccc---cccchhhhhcccceeeeeccccc
Q psy11626 188 REHFT-LLIREMKAAFRAENFLLSASVL-PHVNYT---VYFDVPSITQHLDMITLHAYDFL 243 (596)
Q Consensus 188 ~~~~~-~ll~~Lr~~l~~~~~~ls~av~-~~~~~~---~~~~~~~~~~~~d~i~~m~Yd~~ 243 (596)
.-.++ .+.++|++.=-.. .++--++. +..... ..-+...+...+|.+.+|||||.
T Consensus 205 al~~v~hl~k~Lhkq~l~~-iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s 264 (392)
T KOG2091|consen 205 ALELVEHLGKALHKQELQA-ILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYS 264 (392)
T ss_pred HHHHHHHHHHHHHHhheEE-EEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecc
Confidence 34455 6777776432222 33333333 322222 22367788899999999999986
No 60
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.94 E-value=0.2 Score=52.28 Aligned_cols=98 Identities=16% Similarity=0.269 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCCCeeeeec-cCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcE
Q psy11626 130 SFIETTVAALKKYGFNGLDLAW-EFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFL 208 (596)
Q Consensus 130 ~f~~si~~~l~~~gfDGvdiDw-E~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ 208 (596)
...-.|..-+.+.|||.|.||+ .||... .... +.-+.......-.+....||+..|+++++.+..
T Consensus 124 ~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~-~~~~-------------l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~ 189 (316)
T PF13200_consen 124 DYNIDIAKEAAKLGFDEIQFDYIRFPDEG-RLSG-------------LDYSENDTEESRVDAITDFLAYAREELHPYGVP 189 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEeeeeecCCCC-cccc-------------cccCCCCCcchHHHHHHHHHHHHHHHHhHcCCC
Confidence 4455577778889999999997 577721 1000 001110111113478899999999999999999
Q ss_pred EEEEecCCcccc-----cccchhhhhcccceeeeeccc
Q psy11626 209 LSASVLPHVNYT-----VYFDVPSITQHLDMITLHAYD 241 (596)
Q Consensus 209 ls~av~~~~~~~-----~~~~~~~~~~~~d~i~~m~Yd 241 (596)
||+.|-+...+. .+=+++.+++++|.|.-|-|=
T Consensus 190 vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYP 227 (316)
T PF13200_consen 190 VSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYP 227 (316)
T ss_pred EEEEecccccccCCCCCcCCCHHHHhhhCCEEEecccc
Confidence 999997543322 223555555555555555553
No 61
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=92.62 E-value=8.4 Score=39.58 Aligned_cols=129 Identities=18% Similarity=0.308 Sum_probs=76.3
Q ss_pred cccEEEE-EEEEecCCCceE-EecCCccccccccchhhhHHHHH-HHhhhCCCceEEE--EEcCCCCCCC----------
Q psy11626 50 MCTHLVY-GFAGISDSGDYH-IKSLDKELDTDKNKGKELFKQIT-ALKTFQPNLNIML--SVGGFEDDDD---------- 114 (596)
Q Consensus 50 ~~Thviy-afa~v~~~g~~~-~~~~~~~~d~~~~~~~~~~~~~~-~lk~~~p~lkvll--siGG~~~~~~---------- 114 (596)
++++|++ +|+-.+.+|... +...+..++.. ...+.+++ +|+.+ .++||.. -+=+|.....
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvr----aDlf~rvawql~tr-~~v~VyAWMPvlaf~lp~~~~~~~~~~~~ 104 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVR----ADLFNRVAWQLRTR-AGVKVYAWMPVLAFDLPKVKRADEVRTDR 104 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchH----HHHHHHHHHHHhhh-hCCEEEEeeehhhccCCCcchhhhccccC
Confidence 5778888 888877777544 23345555555 67888887 67765 4899983 3223332110
Q ss_pred --hhhhhhhc-CCHHHHHHHHHHHHHHHHHh-CCCeeee-------eccCCCcCccccccccccchhcccccccCCCCCC
Q psy11626 115 --KEKYLEVL-DDPKYRKSFIETTVAALKKY-GFNGLDL-------AWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 183 (596)
Q Consensus 115 --s~~f~~~~-~~~~~r~~f~~si~~~l~~~-gfDGvdi-------DwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 183 (596)
...+.++. -+++. ++.+.+|-+=|..| .||||=| |+|.|..... +.
T Consensus 105 ~~~~~y~RLSPf~p~~-r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~----------------------~~ 161 (294)
T PF14883_consen 105 PDPDGYRRLSPFDPEA-RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQN----------------------PA 161 (294)
T ss_pred CCCCCceecCCCCHHH-HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccC----------------------hh
Confidence 11122222 13444 46677888878787 8999998 3453222110 00
Q ss_pred CccchHHHHHHHHHHHHHhhhcC
Q psy11626 184 PTLHREHFTLLIREMKAAFRAEN 206 (596)
Q Consensus 184 ~~~d~~~~~~ll~~Lr~~l~~~~ 206 (596)
...-...+..|..+|++..++..
T Consensus 162 ~~~Kt~~Li~ft~eL~~~v~~~r 184 (294)
T PF14883_consen 162 DRQKTRALIDFTMELAAAVRRYR 184 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Confidence 01234678999999999988753
No 62
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.38 E-value=7.3 Score=40.09 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=55.3
Q ss_pred hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccc
Q psy11626 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESY 163 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~ 163 (596)
....+++...++..++..++++|+|... +.++ .+++.+.++|+|+|+|++-.|......
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~~-----------------~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~--- 141 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSSK-----------------EDYV-ELARKIERAGAKALELNLSCPNVGGGR--- 141 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCCH-----------------HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCc---
Confidence 3445555555543357889999998642 1222 245566777999999999888643210
Q ss_pred ccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecC
Q psy11626 164 TLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~ 215 (596)
.-..+.+...++++++|++. ++-|++-+++
T Consensus 142 -------------------~~~~~~~~~~eiv~~vr~~~---~~pv~vKl~~ 171 (289)
T cd02810 142 -------------------QLGQDPEAVANLLKAVKAAV---DIPLLVKLSP 171 (289)
T ss_pred -------------------ccccCHHHHHHHHHHHHHcc---CCCEEEEeCC
Confidence 01124567778888888876 3445554443
No 63
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.69 E-value=6.6 Score=40.63 Aligned_cols=88 Identities=14% Similarity=0.190 Sum_probs=53.9
Q ss_pred hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccc
Q psy11626 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESY 163 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~ 163 (596)
...++.+...+++ .+.+++++|+|... +.|++ ++..+++.|+|+|+|+.-.|.....+
T Consensus 75 ~~~~~~~~~~~~~-~~~p~ivsi~g~~~-----------------~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g--- 132 (296)
T cd04740 75 EAFLEELLPWLRE-FGTPVIASIAGSTV-----------------EEFVE-VAEKLADAGADAIELNISCPNVKGGG--- 132 (296)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEEecCCH-----------------HHHHH-HHHHHHHcCCCEEEEECCCCCCCCCc---
Confidence 3455566555443 47889999997532 34443 44556778999999999888654211
Q ss_pred ccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEec
Q psy11626 164 TLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVL 214 (596)
Q Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~ 214 (596)
. .-..+.+.+.++++++|++. +.-|++-++
T Consensus 133 ---------------~---~~~~~~~~~~eiv~~vr~~~---~~Pv~vKl~ 162 (296)
T cd04740 133 ---------------M---AFGTDPEAVAEIVKAVKKAT---DVPVIVKLT 162 (296)
T ss_pred ---------------c---cccCCHHHHHHHHHHHHhcc---CCCEEEEeC
Confidence 0 00124566778888888776 334444443
No 64
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.50 E-value=7.8 Score=40.25 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=52.8
Q ss_pred hhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeeeeccCCCcCcccccc
Q psy11626 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG-FNGLDLAWEFPVVTEKHESY 163 (596)
Q Consensus 85 ~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~g-fDGvdiDwE~p~~~~~~~~~ 163 (596)
..++.+...+++. +..+++||+|.+. +.|++ ++..++++| +|||+|+.-.|.....
T Consensus 78 ~~~~~~~~~~~~~-~~p~i~si~g~~~-----------------~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~g---- 134 (301)
T PRK07259 78 AFIEEELPWLEEF-DTPIIANVAGSTE-----------------EEYAE-VAEKLSKAPNVDAIELNISCPNVKHG---- 134 (301)
T ss_pred HHHHHHHHHHhcc-CCcEEEEeccCCH-----------------HHHHH-HHHHHhccCCcCEEEEECCCCCCCCC----
Confidence 3445555544332 6789999988532 34443 344567888 9999999987764320
Q ss_pred ccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEec
Q psy11626 164 TLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVL 214 (596)
Q Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~ 214 (596)
|. .-..+.+.+.++++++|++. ++-|++-++
T Consensus 135 --g~---------------~~~~~~~~~~eiv~~vr~~~---~~pv~vKl~ 165 (301)
T PRK07259 135 --GM---------------AFGTDPELAYEVVKAVKEVV---KVPVIVKLT 165 (301)
T ss_pred --cc---------------ccccCHHHHHHHHHHHHHhc---CCCEEEEcC
Confidence 00 01124567788888888876 344554443
No 65
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=86.38 E-value=12 Score=40.59 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCcc
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVV 317 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~ 317 (596)
+++|..|+-+.+.+.+++.++|++.+|+|+.....
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDIT 196 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCC
Confidence 46899999999999999999999999999986543
No 66
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=83.56 E-value=17 Score=39.29 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=41.0
Q ss_pred hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcC
Q psy11626 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVT 157 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~ 157 (596)
+..++.+..+|++.|++.|++||.|... .+.|.. ++..+++.|.|+|+|++-.|...
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s---~~~~~~--------------~a~~~e~~GaD~iELNiSCPn~~ 154 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYN---KDAWEE--------------IIERVEETGVDALEINFSCPHGM 154 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCC---HHHHHH--------------HHHHHHhcCCCEEEEECCCCCCC
Confidence 4566677778877788999999965322 233332 34456778999999999998764
No 67
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.55 E-value=3.7 Score=43.48 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccC---------CCcCccccccccccchhcccccccCCCCCCCccchHH-HHHHHH
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEF---------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREH-FTLLIR 196 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~---------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~-~~~ll~ 196 (596)
..+.|++.+. .+++.|||||+|.-=+ |....+ .+...|+ .+.+.. ..+.|+
T Consensus 147 ~i~~~~~aA~-ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R-------------~D~yGGs-----lenR~rf~~EiI~ 207 (338)
T cd04733 147 VIDRFAHAAR-LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKR-------------TDEYGGS-----LENRARLLLEIYD 207 (338)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEchhhhhHHHHhcCCcCCCC-------------CccCCCC-----HHHHHHHHHHHHH
Confidence 4467777654 5778899999998654 332111 1111122 123333 357888
Q ss_pred HHHHHhhhcCcEEEEEecC
Q psy11626 197 EMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 197 ~Lr~~l~~~~~~ls~av~~ 215 (596)
++|++++ .++.|.+-+.+
T Consensus 208 aIR~avG-~d~~v~vris~ 225 (338)
T cd04733 208 AIRAAVG-PGFPVGIKLNS 225 (338)
T ss_pred HHHHHcC-CCCeEEEEEcH
Confidence 8888875 45677776654
No 68
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=82.59 E-value=17 Score=38.63 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeeeccC-------CCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHH
Q psy11626 126 KYRKSFIETTVAALKKYGFNGLDLAWEF-------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREM 198 (596)
Q Consensus 126 ~~r~~f~~si~~~l~~~gfDGvdiDwE~-------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~L 198 (596)
+-.+.|++.+. .+++-|||||+|+--+ .... .|+=++.+.|+. ++......++++++
T Consensus 138 ~ii~~f~~AA~-ra~~aGfDgVeih~ahGyLl~qFlsp~-----------~N~RtD~yGGsl----enR~r~~~eiv~~i 201 (343)
T cd04734 138 EIIAAFADAAR-RCQAGGLDGVELQAAHGHLIDQFLSPL-----------TNRRTDEYGGSL----ENRMRFLLEVLAAV 201 (343)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhhCCC-----------cCCCCCcCCCCH----HHHhHHHHHHHHHH
Confidence 44567887665 5566899999999732 1211 111111122221 12234567888888
Q ss_pred HHHhhhcCcEEEEEecCCc
Q psy11626 199 KAAFRAENFLLSASVLPHV 217 (596)
Q Consensus 199 r~~l~~~~~~ls~av~~~~ 217 (596)
|++.+ ..+.+.+-+.+..
T Consensus 202 r~~vg-~~~~v~iRl~~~~ 219 (343)
T cd04734 202 RAAVG-PDFIVGIRISGDE 219 (343)
T ss_pred HHHcC-CCCeEEEEeehhh
Confidence 88875 4466666666543
No 69
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=82.49 E-value=28 Score=35.46 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=40.0
Q ss_pred ChHHHHH---HHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHH
Q psy11626 285 DPKYRKS---FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 361 (596)
Q Consensus 285 ~~~~r~~---~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~ 361 (596)
++..|+. .++..++++..-|.+-+-+ +.... +......+...++...++++.+
T Consensus 85 ~~~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~~~~-----------------------~~~~~~~~~~~~~~~~l~~l~~ 140 (279)
T TIGR00542 85 DKAVRQQGLEIMEKAIQLARDLGIRTIQL-AGYDV-----------------------YYEEHDEETRRRFREGLKEAVE 140 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEe-cCccc-----------------------ccCcCCHHHHHHHHHHHHHHHH
Confidence 4566655 4677788888888876643 11100 0011123446777888888888
Q ss_pred HhccCCcEEEEEE
Q psy11626 362 AFRAENFLLSASV 374 (596)
Q Consensus 362 ~l~~~~~~Ls~av 374 (596)
...+.|..|.+-.
T Consensus 141 ~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 141 LAARAQVTLAVEI 153 (279)
T ss_pred HHHHcCCEEEEee
Confidence 8887787776653
No 70
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=82.18 E-value=8.8 Score=43.42 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCc-cChHHHHHHHHHHHHH
Q psy11626 284 DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPT-LHREHFTLLIREMKAA 362 (596)
Q Consensus 284 ~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~d~~~f~~flkelr~~ 362 (596)
.|+.=|.-.+++..+.++..||||+-||= +|. +-..++..+. .. .-...|..||++++++
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq-------------~G~-~~~~~d~~G~-----~i~~l~~~y~~Fi~~~K~~ 298 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQ-------------LGN-RGTVYDYDGN-----KIYDLSDGYASFINAMKEA 298 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE--------------S---EEEEGGTT--------GGECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeec-------------cCC-CCccccCCCC-----CchhhHHHHHHHHHHHHHh
Confidence 46677899999999999999999999993 331 1111221111 23 4578999999999999
Q ss_pred hccC
Q psy11626 363 FRAE 366 (596)
Q Consensus 363 l~~~ 366 (596)
+...
T Consensus 299 ~~~k 302 (559)
T PF13199_consen 299 LPDK 302 (559)
T ss_dssp STTS
T ss_pred CCCC
Confidence 9543
No 71
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.11 E-value=25 Score=35.78 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=39.4
Q ss_pred ChHHHHH---HHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHH
Q psy11626 285 DPKYRKS---FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 361 (596)
Q Consensus 285 ~~~~r~~---~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~ 361 (596)
++..|+. .++..++.+..-|.+-+.+.. ++. +......+....+...+++|.+
T Consensus 90 ~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~-~~~-----------------------~~~~~~~~~~~~~~~~l~~l~~ 145 (283)
T PRK13209 90 DDAVRAQALEIMRKAIQLAQDLGIRVIQLAG-YDV-----------------------YYEQANNETRRRFIDGLKESVE 145 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-ccc-----------------------cccccHHHHHHHHHHHHHHHHH
Confidence 4555544 577788888888888765421 100 0001113345677778888888
Q ss_pred HhccCCcEEEEEE
Q psy11626 362 AFRAENFLLSASV 374 (596)
Q Consensus 362 ~l~~~~~~Ls~av 374 (596)
...+.|..|.+-.
T Consensus 146 ~A~~~GV~i~iE~ 158 (283)
T PRK13209 146 LASRASVTLAFEI 158 (283)
T ss_pred HHHHhCCEEEEee
Confidence 7777776666543
No 72
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=81.39 E-value=25 Score=35.17 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcE
Q psy11626 290 KSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFL 369 (596)
Q Consensus 290 ~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~ 369 (596)
...++..+.++..-|..-+.+-.+.+ +.+....+....+...++++.+...+.|..
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~------------------------~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~ 138 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR------------------------PAGVSPEEARATLVENLRYAADALDRIGLT 138 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC------------------------CCCCCHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 45677888899988888765433211 001111223456667777777777777766
Q ss_pred EEEE
Q psy11626 370 LSAS 373 (596)
Q Consensus 370 Ls~a 373 (596)
|.+-
T Consensus 139 l~lE 142 (254)
T TIGR03234 139 LLIE 142 (254)
T ss_pred EEEE
Confidence 6554
No 73
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=80.69 E-value=6.7 Score=40.64 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecC
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 315 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p 315 (596)
+.+|..++-|.+.+.+.+.+.|+||..+|+.-|
T Consensus 128 ~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 128 LTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQG 160 (292)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCC
Confidence 457889999999999999999999999998644
No 74
>KOG4701|consensus
Probab=80.02 E-value=7 Score=41.23 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhccCC--cEEEEEEc-CCcCcccccChhhH-hhhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCC
Q psy11626 350 EHFTLLIREMKAAFRAEN--FLLSASVL-PHVNYTVYFDVPSI-TQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGR 425 (596)
Q Consensus 350 ~~f~~flkelr~~l~~~~--~~Ls~av~-~~~~~~~~~d~~~i-~~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~ 425 (596)
.+|.+|-+.||+.|...+ |.|++|-. |.+....+ +.| .+..||+.|.=|+-.. | ... ..
T Consensus 164 ~~ysaLA~~L~~~Fa~~~r~yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYNN~~-----C------S~S---sG 226 (568)
T KOG4701|consen 164 TAYSALAKRLLEIFASDPRRYYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYNNST-----C------SGS---SG 226 (568)
T ss_pred chHHHHHHHHHHHHccCCceEEeccCCCCCCCchhhh---hhhhccccceEEEEeecCCC-----c------ccc---cC
Confidence 678999999999998764 55565422 22222111 223 2458999998886310 0 000 00
Q ss_pred CCCCCHHHHHHHHHHcCCCCCc---EEEeeecc
Q psy11626 426 VPHQNANAMVRWFIEHGVELQK---LVLGIPTF 455 (596)
Q Consensus 426 ~~~~sv~~~v~~~~~~Gvp~~K---LvlGvp~Y 455 (596)
....+.+.-+.| ...+.++| |.||+|..
T Consensus 227 ~~Q~~fDsW~~y--a~~~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 227 SRQSTFDAWVEY--AEDSAYNKNTSLFLGLPGH 257 (568)
T ss_pred cccccHHHHHHH--HhhhcccccceEEeeccCC
Confidence 112233443333 23477888 99999854
No 75
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=79.79 E-value=9.2 Score=39.87 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
+.+|+.|+-+.+.+.+++.+.|+||+++|+.-|.
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 167 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEAS 167 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcc
Confidence 5689999999888888888999999999998763
No 76
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=79.61 E-value=5.3 Score=36.36 Aligned_cols=66 Identities=14% Similarity=0.323 Sum_probs=45.6
Q ss_pred hhhHHHHHHHhhhCCCceEE--EEEcCCCCCC------------C----------hhhhhhhcCCHHHHHHHHHHHHHHH
Q psy11626 84 KELFKQITALKTFQPNLNIM--LSVGGFEDDD------------D----------KEKYLEVLDDPKYRKSFIETTVAAL 139 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvl--lsiGG~~~~~------------~----------s~~f~~~~~~~~~r~~f~~si~~~l 139 (596)
...+.+++++.++. |++|+ ++++ |...- + ...+...--+...|+.++..|.+++
T Consensus 43 ~Dllge~v~a~h~~-Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 43 RDLLGEQVEACHER-GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREIL 120 (132)
T ss_pred cCHHHHHHHHHHHC-CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHH
Confidence 34667777755553 99998 4555 43200 0 1225455555678899999999999
Q ss_pred HHhCCCeeeeec
Q psy11626 140 KKYGFNGLDLAW 151 (596)
Q Consensus 140 ~~~gfDGvdiDw 151 (596)
++|.+|||=|||
T Consensus 121 ~~y~~DGiF~D~ 132 (132)
T PF14871_consen 121 DRYDVDGIFFDI 132 (132)
T ss_pred HcCCCCEEEecC
Confidence 999999999997
No 77
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=78.99 E-value=34 Score=34.47 Aligned_cols=60 Identities=8% Similarity=0.028 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcE
Q psy11626 290 KSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFL 369 (596)
Q Consensus 290 ~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~ 369 (596)
...++.++.++++.|.+-|.+-++... ......+....+...++++.+...+.|..
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~~------------------------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKTP------------------------AGFSSEQIHATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCC------------------------CCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 456789999999999887755333210 00011222466777788887777777877
Q ss_pred EEEE
Q psy11626 370 LSAS 373 (596)
Q Consensus 370 Ls~a 373 (596)
|.+-
T Consensus 140 l~lE 143 (258)
T PRK09997 140 LLIE 143 (258)
T ss_pred EEEE
Confidence 6664
No 78
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=78.58 E-value=8.1 Score=40.57 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=30.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
-+.+|.+|+-|.+.+.+.+.+.|+||..+|+.=|.
T Consensus 127 Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 127 DATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPE 161 (319)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 35688889889898889999999999999999765
No 79
>PRK12677 xylose isomerase; Provisional
Probab=78.26 E-value=65 Score=34.83 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEE
Q psy11626 132 IETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA 211 (596)
Q Consensus 132 ~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~ 211 (596)
...++..+.+.||+||.|..+.+..-+. +...-...++++|+.+...|+.+++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~---------------------------~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGA---------------------------TDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCC---------------------------ChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 3457788999999999997553221100 0111224688899999999988776
Q ss_pred Ee
Q psy11626 212 SV 213 (596)
Q Consensus 212 av 213 (596)
..
T Consensus 86 v~ 87 (384)
T PRK12677 86 VT 87 (384)
T ss_pred Ee
Confidence 44
No 80
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=78.14 E-value=40 Score=34.31 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCeeeeeccCC
Q psy11626 133 ETTVAALKKYGFNGLDLAWEFP 154 (596)
Q Consensus 133 ~si~~~l~~~gfDGvdiDwE~p 154 (596)
...++++++.|||||+|.-..+
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~ 34 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNP 34 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCC
Confidence 4577899999999999876544
No 81
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=77.96 E-value=35 Score=37.26 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=50.5
Q ss_pred hHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccccc
Q psy11626 86 LFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTL 165 (596)
Q Consensus 86 ~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~ 165 (596)
.+..+..+++..++..+++||.|... + +.|+ ..+..+++.|+|+|+|+.-.|...... +.
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~g~~~-------------~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~---~~ 145 (420)
T PRK08318 86 NLREIRRVKRDYPDRALIASIMVECN-------------E---EEWK-EIAPLVEETGADGIELNFGCPHGMSER---GM 145 (420)
T ss_pred HHHHHHHHHhhCCCceEEEEeccCCC-------------H---HHHH-HHHHHHHhcCCCEEEEeCCCCCCcccc---CC
Confidence 33445556555556778899987522 1 2222 345556778999999999999732110 01
Q ss_pred ccchhcccccccCCCCCCCccchHHHHHHHHHHHHHh
Q psy11626 166 GSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202 (596)
Q Consensus 166 ~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l 202 (596)
|.. -.++.+.+..+++++|+..
T Consensus 146 g~~---------------~~~~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 146 GSA---------------VGQVPELVEMYTRWVKRGS 167 (420)
T ss_pred ccc---------------ccCCHHHHHHHHHHHHhcc
Confidence 110 1136788889999998875
No 82
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=77.73 E-value=14 Score=35.15 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCccceeee-cCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEE
Q psy11626 292 FIETTVAALKKYGFNGLDLAWE-FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLL 370 (596)
Q Consensus 292 ~i~~~i~~~~~~g~dGi~ld~e-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~L 370 (596)
.+..+++.++..|.+-+.+-.. ++.. ......+..+.+...+++|.+.+.+.|..|
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~-----------------------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSG-----------------------PEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSS-----------------------TTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCceeecCcccccc-----------------------cCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 5667777777877766655522 0000 011123466777778888888888778777
Q ss_pred EEEEcCCcCc
Q psy11626 371 SASVLPHVNY 380 (596)
Q Consensus 371 s~av~~~~~~ 380 (596)
.+-..+....
T Consensus 129 ~lE~~~~~~~ 138 (213)
T PF01261_consen 129 ALENHPGPFS 138 (213)
T ss_dssp EEE-SSSSSS
T ss_pred EEecccCccc
Confidence 6665544433
No 83
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=77.63 E-value=35 Score=36.38 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=56.7
Q ss_pred hhhHHHHHHHhhhCCCceEEEEE--cCCCCCCC-----hh-------hhhhhcCC---HHHHHHHHHHHHHHHHHhCCCe
Q psy11626 84 KELFKQITALKTFQPNLNIMLSV--GGFEDDDD-----KE-------KYLEVLDD---PKYRKSFIETTVAALKKYGFNG 146 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsi--GG~~~~~~-----s~-------~f~~~~~~---~~~r~~f~~si~~~l~~~gfDG 146 (596)
-..++++++.-+++ +.|+++=| +|...... +. .....++. .+-.+.|++.+.. +++-||||
T Consensus 76 i~~~~~l~~~vh~~-g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~-a~~aGfDg 153 (353)
T cd02930 76 AAGHRLITDAVHAE-GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAAL-AREAGYDG 153 (353)
T ss_pred HHHHHHHHHHHHHc-CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCCCE
Confidence 55677777644443 88887655 33321100 00 01111222 1344677776654 56679999
Q ss_pred eeeeccC-------CCcCccccccccccchhcccccccCCCCCCCccc-hHHHHHHHHHHHHHhhhcCcEEEEEecC
Q psy11626 147 LDLAWEF-------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH-REHFTLLIREMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 147 vdiDwE~-------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d-~~~~~~ll~~Lr~~l~~~~~~ls~av~~ 215 (596)
|+|.--+ .... .|+-.+.+.|+- +. .....++++++|++++. ++.|.+-+.+
T Consensus 154 Veih~ahGyLl~qFlsp~-----------~N~RtD~yGGsl-----enR~r~~~eiv~aIR~~vG~-d~~v~iRi~~ 213 (353)
T cd02930 154 VEIMGSEGYLINQFLAPR-----------TNKRTDEWGGSF-----ENRMRFPVEIVRAVRAAVGE-DFIIIYRLSM 213 (353)
T ss_pred EEEecccchHHHHhcCCc-----------cCCCcCccCCCH-----HHHhHHHHHHHHHHHHHcCC-CceEEEEecc
Confidence 9997632 1111 011111121221 22 33457788999998864 4556655544
No 84
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.43 E-value=56 Score=33.12 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=38.1
Q ss_pred ChHHHHH---HHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHH
Q psy11626 285 DPKYRKS---FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 361 (596)
Q Consensus 285 ~~~~r~~---~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~ 361 (596)
++..|+. .++.++..+..-|.+-+.+- .+.. .......+....+...++++.+
T Consensus 85 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~-~~~~-----------------------~~~~~~~~~~~~~~~~l~~l~~ 140 (284)
T PRK13210 85 DPATRERALEIMKKAIRLAQDLGIRTIQLA-GYDV-----------------------YYEEKSEETRQRFIEGLAWAVE 140 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEC-Cccc-----------------------ccccccHHHHHHHHHHHHHHHH
Confidence 4455544 45777778888888777541 1100 0001122345667777777777
Q ss_pred HhccCCcEEEEEE
Q psy11626 362 AFRAENFLLSASV 374 (596)
Q Consensus 362 ~l~~~~~~Ls~av 374 (596)
...+.|..|.+-.
T Consensus 141 ~a~~~gv~l~lE~ 153 (284)
T PRK13210 141 QAAAAQVMLAVEI 153 (284)
T ss_pred HHHHhCCEEEEEe
Confidence 7777787766644
No 85
>KOG2331|consensus
Probab=77.09 E-value=7.7 Score=41.65 Aligned_cols=78 Identities=12% Similarity=0.223 Sum_probs=64.0
Q ss_pred CCceEEE-EEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccc
Q psy11626 98 PNLNIML-SVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 176 (596)
Q Consensus 98 p~lkvll-siGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~ 176 (596)
+||+|+- -|--|..+ ......+++++++-+..++.++++.+-.||||=-|+-|.--..+
T Consensus 123 HGV~vlGTFItEw~eg--~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~------------------ 182 (526)
T KOG2331|consen 123 HGVKVLGTFITEWDEG--KATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLA------------------ 182 (526)
T ss_pred cCceeeeeEEEEeccc--hhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChh------------------
Confidence 3999983 35567654 56778899999999999999999999999999999999654432
Q ss_pred cCCCCCCCccchHHHHHHHHHHHHHhhhc
Q psy11626 177 TGPKDDNPTLHREHFTLLIREMKAAFRAE 205 (596)
Q Consensus 177 ~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~ 205 (596)
...++..|++.|.++++..
T Consensus 183 ----------~i~~l~~F~~~Lt~~~~~~ 201 (526)
T KOG2331|consen 183 ----------KIPNLIQFVSHLTKVLHSS 201 (526)
T ss_pred ----------hCccHHHHHHHHHHHHhhc
Confidence 3678999999999999864
No 86
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=77.00 E-value=47 Score=34.45 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=51.6
Q ss_pred hhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccc
Q psy11626 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYT 164 (596)
Q Consensus 85 ~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~ 164 (596)
...+++..+++..++..+++|+-|... . +.|++ +++.+.+.|+|+|||+.-.|...... +
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~G~~~---~-------------~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~---~ 144 (299)
T cd02940 85 YWLKEIRELKKDFPDKILIASIMCEYN---K-------------EDWTE-LAKLVEEAGADALELNFSCPHGMPER---G 144 (299)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecCCCC---H-------------HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCC---C
Confidence 344555566665556778899977522 1 23333 34455778999999999999863210 0
Q ss_pred cccchhcccccccCCCCCCCccchHHHHHHHHHHHHHh
Q psy11626 165 LGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202 (596)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l 202 (596)
.|.. -..+.+.+..+++.+|+..
T Consensus 145 ~G~~---------------l~~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 145 MGAA---------------VGQDPELVEEICRWVREAV 167 (299)
T ss_pred Cchh---------------hccCHHHHHHHHHHHHHhc
Confidence 1100 1135788888999998865
No 87
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=76.44 E-value=37 Score=35.76 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=50.5
Q ss_pred hhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccc
Q psy11626 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYT 164 (596)
Q Consensus 85 ~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~ 164 (596)
..++++.+++. .+..+++||+|.... . -++.-+.|++.+-.+ .. ..|+|+|+.-.|...+.
T Consensus 116 ~~~~~l~~~~~--~~~plivsi~g~~~~---~-------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~----- 176 (327)
T cd04738 116 AVAKRLKKRRP--RGGPLGVNIGKNKDT---P-------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGL----- 176 (327)
T ss_pred HHHHHHHHhcc--CCCeEEEEEeCCCCC---c-------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCcc-----
Confidence 34444444333 478899999987531 0 112233444444433 22 39999999988875421
Q ss_pred cccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 165 LGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
...++.+.+.++++++|+...
T Consensus 177 ------------------~~~~~~~~~~~iv~av~~~~~ 197 (327)
T cd04738 177 ------------------RDLQGKEALRELLTAVKEERN 197 (327)
T ss_pred ------------------ccccCHHHHHHHHHHHHHHHh
Confidence 012467888999999999875
No 88
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=76.24 E-value=6.8 Score=44.30 Aligned_cols=65 Identities=22% Similarity=0.413 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCc-cchHHHHHHHHHHHH
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPT-LHREHFTLLIREMKA 200 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~d~~~~~~ll~~Lr~ 200 (596)
..++.-|+-.++++.+.++..||||+.||=-.. .+..++. .| ++. .=...|..||+++|+
T Consensus 237 P~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~----------~~~~~d~-----~G----~~i~~l~~~y~~Fi~~~K~ 297 (559)
T PF13199_consen 237 PGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGN----------RGTVYDY-----DG----NKIYDLSDGYASFINAMKE 297 (559)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S------------EEEEGGT-----T-------GGECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHccCCceEeeeccCC----------CCccccC-----CC----CCchhhHHHHHHHHHHHHH
Confidence 356788999999999999999999999993211 0111100 01 111 236899999999999
Q ss_pred Hhhhc
Q psy11626 201 AFRAE 205 (596)
Q Consensus 201 ~l~~~ 205 (596)
+++.+
T Consensus 298 ~~~~k 302 (559)
T PF13199_consen 298 ALPDK 302 (559)
T ss_dssp HSTTS
T ss_pred hCCCC
Confidence 99544
No 89
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=75.33 E-value=9.3 Score=40.53 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=28.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
-+.||.+|+-|-+.+.+++.+.|+||..+|+.-|.
T Consensus 133 Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 133 DFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 35688888888777777788899999999998653
No 90
>PRK01060 endonuclease IV; Provisional
Probab=75.14 E-value=62 Score=32.82 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCeeeeeccCCC
Q psy11626 132 IETTVAALKKYGFNGLDLAWEFPV 155 (596)
Q Consensus 132 ~~si~~~l~~~gfDGvdiDwE~p~ 155 (596)
+...++.+++.|||||+|.-+.|.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~ 37 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQ 37 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCC
Confidence 455788999999999999766553
No 91
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=72.34 E-value=69 Score=34.03 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=46.3
Q ss_pred CCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhccccccc
Q psy11626 98 PNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 177 (596)
Q Consensus 98 p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
.++.|++||+|.... .....-+.|++.+..+ .. +.|+|+|+.-.|...+.
T Consensus 136 ~~~pvivsI~~~~~~----------~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~------------------ 185 (344)
T PRK05286 136 RGIPLGINIGKNKDT----------PLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGL------------------ 185 (344)
T ss_pred CCCcEEEEEecCCCC----------CcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCc------------------
Confidence 478899999985321 0112234444444443 33 49999999998876421
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 178 GPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 178 g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
...++.+.+.++++++|++.+
T Consensus 186 -----~~~~~~~~~~eiv~aVr~~~~ 206 (344)
T PRK05286 186 -----RDLQYGEALDELLAALKEAQA 206 (344)
T ss_pred -----ccccCHHHHHHHHHHHHHHHh
Confidence 012467888999999999886
No 92
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=72.28 E-value=65 Score=32.52 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=38.5
Q ss_pred ChHHHHH---HHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHH
Q psy11626 285 DPKYRKS---FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 361 (596)
Q Consensus 285 ~~~~r~~---~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~ 361 (596)
++..|+. .++..++++..-|.+-+-+-...+. ......+..+.+...+++|.+
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~l~~ 136 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAG------------------------YLTPPNVIWGRLAENLSELCE 136 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCC------------------------CCCCHHHHHHHHHHHHHHHHH
Confidence 4455554 5667788888888887654221110 001112345677778888888
Q ss_pred HhccCCcEEEEE
Q psy11626 362 AFRAENFLLSAS 373 (596)
Q Consensus 362 ~l~~~~~~Ls~a 373 (596)
...+.|..|.+-
T Consensus 137 ~a~~~gv~l~iE 148 (275)
T PRK09856 137 YAENIGMDLILE 148 (275)
T ss_pred HHHHcCCEEEEe
Confidence 888877655443
No 93
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=71.63 E-value=16 Score=38.34 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
-+.+|.+|+-|.+.+.+++.+.|+||..+|+.=|.
T Consensus 128 Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 128 DFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 35688999999888888888999999999998653
No 94
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=71.15 E-value=29 Score=36.81 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=36.8
Q ss_pred hhhHHHHHHHhhhCCCceEEEEE--cCCCCCCC------hh-------hhhhhcCCH---HHHHHHHHHHHHHHHHhCCC
Q psy11626 84 KELFKQITALKTFQPNLNIMLSV--GGFEDDDD------KE-------KYLEVLDDP---KYRKSFIETTVAALKKYGFN 145 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsi--GG~~~~~~------s~-------~f~~~~~~~---~~r~~f~~si~~~l~~~gfD 145 (596)
-..++++++.-+++ +.|+++-| +|...... |. .....++.+ +-.+.|++.. ..+++-|||
T Consensus 80 i~~~r~l~d~vh~~-G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfD 157 (337)
T PRK13523 80 IEGLHKLVTFIHDH-GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAA-VRAKEAGFD 157 (337)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHHcCCC
Confidence 56677777754453 88887655 33321000 00 001112221 3446777755 455668999
Q ss_pred eeeeecc
Q psy11626 146 GLDLAWE 152 (596)
Q Consensus 146 GvdiDwE 152 (596)
||+|.==
T Consensus 158 gVeih~a 164 (337)
T PRK13523 158 VIEIHGA 164 (337)
T ss_pred EEEEccc
Confidence 9999865
No 95
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=70.91 E-value=25 Score=40.76 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=50.9
Q ss_pred cccEEEE-EEEEecCCCceEEec-CCccccccccchhhhHHHHHH-HhhhCCCceEEEEEc--CCCCCCC---hhhh---
Q psy11626 50 MCTHLVY-GFAGISDSGDYHIKS-LDKELDTDKNKGKELFKQITA-LKTFQPNLNIMLSVG--GFEDDDD---KEKY--- 118 (596)
Q Consensus 50 ~~Thviy-afa~v~~~g~~~~~~-~~~~~d~~~~~~~~~~~~~~~-lk~~~p~lkvllsiG--G~~~~~~---s~~f--- 118 (596)
++++|++ +|+.++.+|.....- ....++.. ...|..+.- |+++ .++||..-+. .+..... ...+
T Consensus 347 G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r----~d~f~~~aw~l~~r-~~v~v~AWmp~~~~~~~~~~~~~~~~~~~ 421 (671)
T PRK14582 347 QISTVYLQAFADPDGDGLVKELYFPNRLLPMR----ADLFNRVAWQLRTR-AGVNVYAWMPVLSFDLDPTLPRVKRLDTG 421 (671)
T ss_pred CCCEEEEEeccCCCCCccccccccCccccccc----cCCcCHHHHHHHHh-hCCEEEEeccceeeccCCCcchhhhcccc
Confidence 6888888 888888766543211 11222222 334444333 4433 4899873221 1211000 0000
Q ss_pred -----------hhh-cCCHHHHHHHHHHHHHHHHHhCCCeeeeecc
Q psy11626 119 -----------LEV-LDDPKYRKSFIETTVAALKKYGFNGLDLAWE 152 (596)
Q Consensus 119 -----------~~~-~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE 152 (596)
.++ --+++.|+...+-..++.+.+.||||-||=.
T Consensus 422 ~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 422 EGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred CCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 111 1356666665555666667789999999744
No 96
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.39 E-value=6.7 Score=42.56 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeeeecc--CCCcCccccccccccchhcccccccCCCCCCCcc-----chHHHHHHHH
Q psy11626 124 DPKYRKSFIETTVAALKKYGFNGLDLAWE--FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTL-----HREHFTLLIR 196 (596)
Q Consensus 124 ~~~~r~~f~~si~~~l~~~gfDGvdiDwE--~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----d~~~~~~ll~ 196 (596)
-++.|+-..+-|++++++|..|||.||-- +|...+..+ ++.. -.+ +++-.+++ ..+. -+++-..|++
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~-~~~~--~y~-~et~~~~~--~~~~~w~~WRr~~i~~~v~ 253 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDP-DTVT--LYR-YETGKGPP--SNPDQWTDWRRDNITALVA 253 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCc-hHHH--HHH-hhccCCCC--CCHHHHHHHHHHhHHHHHH
Confidence 35677777778889999999999999932 222211100 0000 000 00000000 1111 1478899999
Q ss_pred HHHHHhhhcCcEEEEEecCC-cccccccchhhhhcccceeeeeccccccCCcccc--cccccccccccccCC
Q psy11626 197 EMKAAFRAENFLLSASVLPH-VNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSI--TQHLDMITLHAYDFR 265 (596)
Q Consensus 197 ~Lr~~l~~~~~~ls~av~~~-~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~--~~~~d~~~~~~yd~~ 265 (596)
.+-...++.+.-+.++++|- ......| +||+.+.|-... ..++|++.+|.|--+
T Consensus 254 ~i~~~VKavKp~v~~svsp~n~~~~~~f---------------~y~~~~qDw~~Wv~~G~iD~l~pqvYr~~ 310 (418)
T COG1649 254 QISQTVKAVKPNVKFSVSPFNPLGSATF---------------AYDYFLQDWRRWVRQGLIDELAPQVYRTL 310 (418)
T ss_pred HHHHHHHhhCCCeEEEEccCCCCCccce---------------ehhhhhhhHHHHHHcccHhhhhhhhhccc
Confidence 99999988665555555552 1111111 677666555443 457888888887544
No 97
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=70.04 E-value=70 Score=33.78 Aligned_cols=79 Identities=15% Similarity=0.287 Sum_probs=47.7
Q ss_pred hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccc
Q psy11626 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESY 163 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~ 163 (596)
+...+.+..++++ .++.++++|+|.+. . .+ ..++..+++.|+|+|+|++-.|.....
T Consensus 87 d~~~~~i~~~~~~-~~~pvi~sI~g~~~----~-------------e~-~~~a~~~~~agad~ielN~scpp~~~~---- 143 (334)
T PRK07565 87 EEYLELIRRAKEA-VDIPVIASLNGSSA----G-------------GW-VDYARQIEQAGADALELNIYYLPTDPD---- 143 (334)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEeccCCH----H-------------HH-HHHHHHHHHcCCCEEEEeCCCCCCCCC----
Confidence 3444555555554 36899999988542 1 22 235555677899999999976543311
Q ss_pred ccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 164 TLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
..|. ...+.+.++++++|+..+
T Consensus 144 ------------~~g~------~~~~~~~eil~~v~~~~~ 165 (334)
T PRK07565 144 ------------ISGA------EVEQRYLDILRAVKSAVS 165 (334)
T ss_pred ------------Cccc------cHHHHHHHHHHHHHhccC
Confidence 0011 123457788888887653
No 98
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=70.00 E-value=62 Score=29.38 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=25.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
..-|...++..++.+-+.+.+|.+||+=+||
T Consensus 102 ~c~ns~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 102 CCLNSPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cCCCccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 3446678887888888888899999998886
No 99
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.70 E-value=1.4e+02 Score=29.95 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhh-hccEeEEeccc
Q psy11626 356 IREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQ-HLDMITLHAYD 402 (596)
Q Consensus 356 lkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~-~vD~i~vM~YD 402 (596)
++++.+.+++.+......+.|..... .+..+.+ ..|+|-+|+..
T Consensus 118 ~~~~~~~~~~~g~~~i~~i~P~T~~~---~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 118 AEEFREAAKEYGLDLIFLVAPTTPDE---RIKKIAELASGFIYYVSRT 162 (242)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHH---HHHHHHhhCCCCEEEEeCC
Confidence 44566667777888888888765432 2456666 78999999863
No 100
>PLN03231 putative alpha-galactosidase; Provisional
Probab=67.48 E-value=67 Score=34.36 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCccceeeecC
Q psy11626 287 KYRKSFIETTVAALKKYGFNGLDLAWEFP 315 (596)
Q Consensus 287 ~~r~~~i~~~i~~~~~~g~dGi~ld~e~p 315 (596)
...+.+.++.++.+-+.|+|=+|+|+-++
T Consensus 159 ~gaq~y~~~~a~~fA~WGVDylK~D~c~~ 187 (357)
T PLN03231 159 EGGKLFIQSLYDQYASWGIDFIKHDCVFG 187 (357)
T ss_pred hhHHHHHHHHHHHHHHhCCCEEeecccCC
Confidence 34578999999999999999999998754
No 101
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=67.00 E-value=49 Score=34.20 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=52.7
Q ss_pred hHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHh--CCCeeeeeccCCCcCcccccc
Q psy11626 86 LFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKY--GFNGLDLAWEFPVVTEKHESY 163 (596)
Q Consensus 86 ~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~--gfDGvdiDwE~p~~~~~~~~~ 163 (596)
..+.+...++.. +..++++|.|.+. +.++ .+++.+.+. ++|+|||+.-.|...+.+
T Consensus 78 ~~~~~~~~~~~~-~~pl~~qi~g~~~-----------------~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g--- 135 (300)
T TIGR01037 78 FLEELKPVREEF-PTPLIASVYGSSV-----------------EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGG--- 135 (300)
T ss_pred HHHHHHHHhccC-CCcEEEEeecCCH-----------------HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCc---
Confidence 344444433332 5679999987542 1222 344445554 499999999988765321
Q ss_pred ccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecC
Q psy11626 164 TLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~ 215 (596)
. .-..+.+...++++++|++. ++.|++-+++
T Consensus 136 ---------------~---~l~~~~~~~~eiv~~vr~~~---~~pv~vKi~~ 166 (300)
T TIGR01037 136 ---------------I---AIGQDPELSADVVKAVKDKT---DVPVFAKLSP 166 (300)
T ss_pred ---------------c---ccccCHHHHHHHHHHHHHhc---CCCEEEECCC
Confidence 0 01125678888999999876 3556666654
No 102
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=66.97 E-value=17 Score=38.13 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeecC
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 315 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p 315 (596)
-+.+|..|+=|.+.+.+++.+.|+||..+|+.-+
T Consensus 134 Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 134 DLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred ecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCC
Confidence 3468899999999999998999999999998743
No 103
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=66.87 E-value=22 Score=37.63 Aligned_cols=71 Identities=15% Similarity=0.302 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccC---------CCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHH
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEF---------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIRE 197 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~---------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~ 197 (596)
-.+.|++.+... ++-|||||+|+--+ |....+...+ -|++.| ......+.+++
T Consensus 152 ii~~~~~aA~~a-~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~y-Ggsl~n----------------r~rf~~eiv~a 213 (336)
T cd02932 152 VVDAFVAAARRA-VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEY-GGSLEN----------------RMRFLLEVVDA 213 (336)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEccccccHHHHhcCCccCCCCccc-CCCHHH----------------HhHHHHHHHHH
Confidence 446777766555 55799999998532 3211111001 122221 23445678888
Q ss_pred HHHHhhhcCcEEEEEecCC
Q psy11626 198 MKAAFRAENFLLSASVLPH 216 (596)
Q Consensus 198 Lr~~l~~~~~~ls~av~~~ 216 (596)
+|++++ .++.|++-+.+.
T Consensus 214 IR~~vG-~d~~v~vri~~~ 231 (336)
T cd02932 214 VRAVWP-EDKPLFVRISAT 231 (336)
T ss_pred HHHHcC-CCceEEEEEccc
Confidence 888885 356777776654
No 104
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.81 E-value=1e+02 Score=31.96 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=54.3
Q ss_pred hhhHHHHHHHhhh--CCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHh--CCCeeeeeccCCCcCcc
Q psy11626 84 KELFKQITALKTF--QPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKY--GFNGLDLAWEFPVVTEK 159 (596)
Q Consensus 84 ~~~~~~~~~lk~~--~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~--gfDGvdiDwE~p~~~~~ 159 (596)
...++++.+++++ .++..+++||+|. . +.+++.+..+.+.. +.|+|||+.-.|...+.
T Consensus 74 ~~~~~~i~~~~~~~~~~~~pvivsi~g~-~-----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~ 135 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS-A-----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK 135 (294)
T ss_pred HHHHHHHHHHhhhccccCCeEEEECCCC-H-----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCc
Confidence 3455566555543 2567889999875 3 23333333333333 79999999999985421
Q ss_pred ccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecC
Q psy11626 160 HESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~ 215 (596)
. . -..|.+.+.++++.+|++.+ .-|++=++|
T Consensus 136 ~---~-------------------~~~~~~~~~~i~~~v~~~~~---iPv~vKl~p 166 (294)
T cd04741 136 P---P-------------------PAYDFDATLEYLTAVKAAYS---IPVGVKTPP 166 (294)
T ss_pred c---c-------------------ccCCHHHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 0 0 11256889999999998864 234554444
No 105
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.74 E-value=23 Score=37.19 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=29.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeecC
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 315 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p 315 (596)
-+.+|.+|+-|.+.+.+.+.+.|+||..+|+.-|
T Consensus 136 Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 136 DFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred cCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 3468889988888888999999999999999855
No 106
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=66.53 E-value=61 Score=31.69 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEeccc
Q psy11626 354 LLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 402 (596)
Q Consensus 354 ~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD 402 (596)
.+++.+|+ .|....+++.|..... .+..+.+.+|+|.||+-+
T Consensus 96 ~~i~~ik~----~g~k~GialnP~T~~~---~~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 96 ETIKYIKE----AGIKAGIALNPETPVE---ELEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp HHHHHHHH----TTSEEEEEE-TTS-GG---GGTTTGCCSSEEEEESS-
T ss_pred HHHHHHHH----hCCCEEEEEECCCCch---HHHHHhhhcCEEEEEEec
Confidence 34444444 5889999998875543 345677889999999965
No 107
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=66.13 E-value=21 Score=37.80 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 284 DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 284 ~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
.+|..|+=| ...++.+.+.|++|+.+|+.=|.
T Consensus 104 tnp~ar~wW-~~~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 104 GRPDVREWW-GNQYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred CCHHHHHHH-HHHHHHHHhCCCceeecCCCCcc
Confidence 477888855 55567777889999999997665
No 108
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=65.91 E-value=97 Score=36.06 Aligned_cols=96 Identities=16% Similarity=0.301 Sum_probs=59.3
Q ss_pred cccEEEE-EEEEecCCCceE-EecCCccccccccchhhhHHHHH-HHhhhCCCceEE--EEEcCCCCCCC----------
Q psy11626 50 MCTHLVY-GFAGISDSGDYH-IKSLDKELDTDKNKGKELFKQIT-ALKTFQPNLNIM--LSVGGFEDDDD---------- 114 (596)
Q Consensus 50 ~~Thviy-afa~v~~~g~~~-~~~~~~~~d~~~~~~~~~~~~~~-~lk~~~p~lkvl--lsiGG~~~~~~---------- 114 (596)
+++||.+ ||+-.+.||..+ +...+..++.. ...|.+++ +|+.+ .+|||. +-+=+|.....
T Consensus 347 ~~~~VyLqafadp~gdg~~~~lYFpnr~lPmr----aDlfnrvawql~tR-~~v~vyAWmpvl~~~l~~~~~~~~~~~~~ 421 (672)
T PRK14581 347 RVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMR----QDLFNRVVWQLASR-PDVEVYAWMPVLAFDMDPSLPRITRIDPK 421 (672)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEecCCcccHH----HhhhhHHHHHHHhh-hCceEEEeeehhhccCCcccchhhhcccc
Confidence 5789988 998888777653 34456666665 67888884 46665 489998 33334432100
Q ss_pred -------hhhhhhhc-CCHHHHHHHHHHHHHHHHHh-CCCeeeeec
Q psy11626 115 -------KEKYLEVL-DDPKYRKSFIETTVAALKKY-GFNGLDLAW 151 (596)
Q Consensus 115 -------s~~f~~~~-~~~~~r~~f~~si~~~l~~~-gfDGvdiDw 151 (596)
...+.++. -+++. ++.+.+|-+=|..| .||||=|+=
T Consensus 422 ~~~~~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 422 TGKTSIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred cCccccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEecc
Confidence 00222222 13333 36677888777777 799998864
No 109
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=65.07 E-value=19 Score=36.72 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeecCcc
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEFPVV 317 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~p~~ 317 (596)
|+-|.+.+.+++.+.|+||.++|+.-|..
T Consensus 91 ~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~ 119 (265)
T cd06589 91 REWWAEVVKKLLVSLGVDGFWTDMGEPSP 119 (265)
T ss_pred HHHHHHHHHHhhccCCCCEEeccCCCCCc
Confidence 55566666667788999999999987653
No 110
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=64.59 E-value=1e+02 Score=31.78 Aligned_cols=162 Identities=16% Similarity=0.242 Sum_probs=89.7
Q ss_pred ccccccccccCCCCCC-CCCCCC---CCCCcccCC-ChHHHHHHHHHHHHHHHHh-CCCccce-------eeecCcccCC
Q psy11626 254 LDMITLHAYDFRTPQR-NPKEAD---YSAPLHFLD-DPKYRKSFIETTVAALKKY-GFNGLDL-------AWEFPVVTEK 320 (596)
Q Consensus 254 ~d~~~~~~yd~~g~~~-~~~~~~---~~ap~~~~~-~~~~r~~~i~~~i~~~~~~-g~dGi~l-------d~e~p~~~~~ 320 (596)
.=|..++++|+..... .+..++ ...-.++.- +|..| +.|.+|-+=+-.| .||||=+ |+|.|.....
T Consensus 81 yAWMPvlaf~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~ 159 (294)
T PF14883_consen 81 YAWMPVLAFDLPKVKRADEVRTDRPDPDGYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQN 159 (294)
T ss_pred EEeeehhhccCCCcchhhhccccCCCCCCceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccC
Confidence 3467788888854211 111111 111111211 34444 4677777777777 7999865 4443321110
Q ss_pred ccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEE--EcC----CcCcccc--cChhhHhhh
Q psy11626 321 HESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSAS--VLP----HVNYTVY--FDVPSITQH 392 (596)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~a--v~~----~~~~~~~--~d~~~i~~~ 392 (596)
+....-...++.|..||++.++.....|-.| +.+ .+....+ =++..+.+.
T Consensus 160 ----------------------~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkTARNiya~pvl~P~se~WfAQnl~~fl~~ 217 (294)
T PF14883_consen 160 ----------------------PADRQKTRALIDFTMELAAAVRRYRPDLKTARNIYAEPVLNPESEAWFAQNLDDFLKA 217 (294)
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHHHHHhCccchhhhcccccccCCcchhhHHHHhHHHHHHh
Confidence 0001223567888899998888764333222 111 1112222 257788888
Q ss_pred ccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEeeecc
Q psy11626 393 LDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTF 455 (596)
Q Consensus 393 vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gvp~~KLvlGvp~Y 455 (596)
-||..+|+.=++-.-. .+...+...++.......+.+|+|+-+...
T Consensus 218 YD~taimAMPymE~~~-----------------~~~~WL~~Lv~~v~~~p~~l~KtvFELQa~ 263 (294)
T PF14883_consen 218 YDYTAIMAMPYMEQAE-----------------DPEQWLAQLVDAVAARPGGLDKTVFELQAV 263 (294)
T ss_pred CCeeheeccchhcccc-----------------CHHHHHHHHHHHHHhcCCcccceEEEEecc
Confidence 8999999876553311 123356777777777777789999887654
No 111
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=64.28 E-value=34 Score=36.31 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHH-HHHHHHHHHHhhhc
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHF-TLLIREMKAAFRAE 205 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~-~~ll~~Lr~~l~~~ 205 (596)
-.+.|++.... +++-|||||+|.=-+-..-.+ =+...+|.=.+.+.|+ .+.+..| .++|+++|++.++
T Consensus 147 ii~~f~~AA~~-A~~AGfDGVEIH~ahGyLl~q----FLSp~~N~RtDeYGGs-----~ENR~Rf~~Eii~aIr~~vg~- 215 (341)
T PF00724_consen 147 IIEDFAQAARR-AKEAGFDGVEIHAAHGYLLSQ----FLSPLTNRRTDEYGGS-----LENRARFLLEIIEAIREAVGP- 215 (341)
T ss_dssp HHHHHHHHHHH-HHHTT-SEEEEEESTTSHHHH----HHSTTT---SSTTSSS-----HHHHHHHHHHHHHHHHHHHTG-
T ss_pred HHHHHHHHHHH-HHHhccCeEeecccchhhhhh----eeeeccCCCchhhhhh-----hchhhHHHHHHHHHHHHHhcC-
Confidence 34567766554 455899999998643110000 0001112212222232 2445555 6678888888874
Q ss_pred CcEEEEEecCCcccccccc
Q psy11626 206 NFLLSASVLPHVNYTVYFD 224 (596)
Q Consensus 206 ~~~ls~av~~~~~~~~~~~ 224 (596)
.+.|.+-+++......++.
T Consensus 216 d~~v~~Rls~~~~~~~g~~ 234 (341)
T PF00724_consen 216 DFPVGVRLSPDDFVEGGIT 234 (341)
T ss_dssp GGEEEEEEETTCSSTTSHH
T ss_pred CceEEEEEeeecccCCCCc
Confidence 5778888877655544443
No 112
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.96 E-value=62 Score=33.81 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhCCCeeeeecc
Q psy11626 128 RKSFIETTVAALKKYGFNGLDLAWE 152 (596)
Q Consensus 128 r~~f~~si~~~l~~~gfDGvdiDwE 152 (596)
.+.|++.+.. +++-|||||+|+--
T Consensus 140 i~~~~~aA~~-a~~aGfDgveih~~ 163 (327)
T cd02803 140 IEDFAAAARR-AKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEcch
Confidence 3566665544 45589999999864
No 113
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=63.53 E-value=29 Score=36.06 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
+.+|..|+-+ .+.++.+.+.|++|.++|+.-+.
T Consensus 129 ftnp~a~~w~-~~~~~~~~~~Gid~~~~D~~e~~ 161 (308)
T cd06593 129 FTNPDACKWY-KDKLKPLLDMGVDCFKTDFGERI 161 (308)
T ss_pred CCCHHHHHHH-HHHHHHHHHhCCcEEecCCCCCC
Confidence 4678888655 45556777899999999998654
No 114
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=63.33 E-value=1.7e+02 Score=29.34 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=50.1
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccccccc
Q psy11626 88 KQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 167 (596)
Q Consensus 88 ~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~ 167 (596)
+++.+++ . +++++++||+.+. +.|. .+...+.+ ++|+|||+--.|...-.. .+.|+
T Consensus 59 ~e~~~~~-~--~~~vivnv~~~~~----ee~~--------------~~a~~v~~-~~d~IdiN~gCP~~~v~~--~g~G~ 114 (231)
T TIGR00736 59 EQIKKAE-S--RALVSVNVRFVDL----EEAY--------------DVLLTIAE-HADIIEINAHCRQPEITE--IGIGQ 114 (231)
T ss_pred HHHHHHh-h--cCCEEEEEecCCH----HHHH--------------HHHHHHhc-CCCEEEEECCCCcHHHcC--CCCch
Confidence 3444554 2 5689999998764 2221 23444544 799999999998743110 11122
Q ss_pred chhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecC
Q psy11626 168 IWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~ 215 (596)
.. ..|.+.+..+++.+|+. +.-||+=+.+
T Consensus 115 ~L---------------l~dp~~l~~iv~av~~~----~~PVsvKiR~ 143 (231)
T TIGR00736 115 EL---------------LKNKELLKEFLTKMKEL----NKPIFVKIRG 143 (231)
T ss_pred hh---------------cCCHHHHHHHHHHHHcC----CCcEEEEeCC
Confidence 11 13567888888888832 4456665544
No 115
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=62.57 E-value=39 Score=36.34 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccC---------CCcCccccccccccchhcccccccCCCCCCCccch-HHHHHHHH
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEF---------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHR-EHFTLLIR 196 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~---------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~-~~~~~ll~ 196 (596)
-.+.|++... .+++-|||||+|.--+ |... +-.+...|+- +.+ .-..++++
T Consensus 148 ii~~f~~AA~-ra~~aGfDgVEih~ahGyLl~QFlSp~~N-------------~RtD~yGGsl-----enR~Rf~~eii~ 208 (370)
T cd02929 148 VRRWYVDAAL-RARDAGFDIVYVYAAHGYLPLQFLLPRYN-------------KRTDEYGGSL-----ENRARFWRETLE 208 (370)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEcccccchHHHhhCcccc-------------CCccccCCCh-----HhhhHHHHHHHH
Confidence 4567887654 5566899999999765 3311 1111122221 223 34467888
Q ss_pred HHHHHhhhcCcEEEEEecCC
Q psy11626 197 EMKAAFRAENFLLSASVLPH 216 (596)
Q Consensus 197 ~Lr~~l~~~~~~ls~av~~~ 216 (596)
++|++.+ .++.|.+-+++.
T Consensus 209 aIr~~vg-~~~~v~vRls~~ 227 (370)
T cd02929 209 DTKDAVG-DDCAVATRFSVD 227 (370)
T ss_pred HHHHHcC-CCceEEEEecHH
Confidence 8888876 356666666553
No 116
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.82 E-value=26 Score=37.33 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeeeccC---------CCcCccccccccccchhcccccccCCCCCCCccchHH-HHHHH
Q psy11626 126 KYRKSFIETTVAALKKYGFNGLDLAWEF---------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREH-FTLLI 195 (596)
Q Consensus 126 ~~r~~f~~si~~~l~~~gfDGvdiDwE~---------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~-~~~ll 195 (596)
.-.+.|+++... +++-|||||+|+--+ |....+ .+...|+ .+.+.. ..+++
T Consensus 141 ~ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R-------------~D~yGGs-----lenR~r~~~eii 201 (353)
T cd04735 141 DIIDAFGEATRR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRR-------------TDEWGGS-----LENRMRFPLAVV 201 (353)
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCC-------------CcccCCc-----HHHHHHHHHHHH
Confidence 344678876655 566899999999532 322111 1111122 133444 46788
Q ss_pred HHHHHHhhh---cCcEEEEEecCCc
Q psy11626 196 REMKAAFRA---ENFLLSASVLPHV 217 (596)
Q Consensus 196 ~~Lr~~l~~---~~~~ls~av~~~~ 217 (596)
+++|++.+. .++.|.+-+.+..
T Consensus 202 ~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 202 KAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHhccccCCCceEEEEECccc
Confidence 999999873 4777888777643
No 117
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.58 E-value=58 Score=34.92 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccC
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEF 153 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~ 153 (596)
-.+.|++.. ..+++-|||||+|.=-+
T Consensus 142 ii~~f~~AA-~~a~~aGfDgVeih~ah 167 (361)
T cd04747 142 VIAAFARAA-ADARRLGFDGIELHGAH 167 (361)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEeccc
Confidence 345777655 45566799999999655
No 118
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=61.48 E-value=60 Score=33.38 Aligned_cols=46 Identities=7% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEE
Q psy11626 293 IETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLL 370 (596)
Q Consensus 293 i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~L 370 (596)
.+...+.+.+.|+.|||+||=- .+.+..+.+..++-+..-+.+++|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~~--------------------------------~d~Q~~v~~y~~i~~~AA~~~Lmv 153 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFMD--------------------------------RDDQEMVNWYEDILEDAAEYKLMV 153 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE--S--------------------------------STSHHHHHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHcCCCEEeeCcCC--------------------------------CCCHHHHHHHHHHHHHHHHcCcEE
Confidence 4899999999999999999851 255677777777766655554443
No 119
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=61.35 E-value=1.1e+02 Score=32.09 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=34.3
Q ss_pred hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCC
Q psy11626 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 155 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~ 155 (596)
+..++++..++++ .+..|++||.|.+. +.| ..++..+++.|+|+|+|+.-.|.
T Consensus 85 ~~~~~~i~~~~~~-~~~pvi~si~g~~~----~~~--------------~~~a~~~~~~gad~iElN~s~~~ 137 (325)
T cd04739 85 EEYLELIRRAKRA-VSIPVIASLNGVSA----GGW--------------VDYARQIEEAGADALELNIYALP 137 (325)
T ss_pred HHHHHHHHHHHhc-cCCeEEEEeCCCCH----HHH--------------HHHHHHHHhcCCCEEEEeCCCCC
Confidence 3455566665543 36789999977432 222 23455667789999999998643
No 120
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=60.62 E-value=1.4e+02 Score=31.50 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=47.6
Q ss_pred HhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcc
Q psy11626 93 LKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKI 172 (596)
Q Consensus 93 lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~ 172 (596)
+++...++.+.+|||+.... ..+..-+.|++.+-.+- + ..|.+.|+.-.|...+.
T Consensus 128 i~~~~~~~~i~vsi~~~~~~----------~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~------------- 182 (335)
T TIGR01036 128 LKRARYKGPIGINIGKNKDT----------PSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGL------------- 182 (335)
T ss_pred HhhccCCCcEEEEEeCCCCC----------CcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCc-------------
Confidence 33334578899999876321 11123345555444443 2 38999999988875421
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 173 KKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 173 ~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
...++.+.+.++++.+|++.+
T Consensus 183 ----------~~~~~~~~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 183 ----------RDLQYKAELRDLLTAVKQEQD 203 (335)
T ss_pred ----------ccccCHHHHHHHHHHHHHHHH
Confidence 112467888999999988876
No 121
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=60.42 E-value=28 Score=37.80 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHH
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAA 201 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~ 201 (596)
+++++.|+-+.+.+.++++++|+|.|-+|+-........ ..+++.++ .....+..++++||++
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~--~~~~~~~~---------------~~~~~~y~l~~~L~~~ 224 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGS--PSLPEGYH---------------RYVLGLYRLLDRLRAR 224 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SS--TTS-GHHH---------------HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCC--CCchHHHH---------------HHHHHHHHHHHHHHHh
Confidence 578889999999999999999999999999865443210 00001110 1223455688888888
Q ss_pred hhhcCcEEEEEec
Q psy11626 202 FRAENFLLSASVL 214 (596)
Q Consensus 202 l~~~~~~ls~av~ 214 (596)
++. .++....+
T Consensus 225 ~P~--v~iE~Css 235 (394)
T PF02065_consen 225 FPD--VLIENCSS 235 (394)
T ss_dssp TTT--SEEEE-BT
T ss_pred CCC--cEEEeccC
Confidence 753 45554443
No 122
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.29 E-value=19 Score=39.12 Aligned_cols=112 Identities=17% Similarity=0.252 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccceee--ecCcccCCccccccccceecccccccCCCCCCCcc-----ChHHHHHHHH
Q psy11626 285 DPKYRKSFIETTVAALKKYGFNGLDLAW--EFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTL-----HREHFTLLIR 357 (596)
Q Consensus 285 ~~~~r~~~i~~~i~~~~~~g~dGi~ld~--e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----d~~~f~~flk 357 (596)
.|..|+-..+-+++.+++|.+|||.+|= -+|...+. ..++.. .+..-+|.....++. .+++-.+||+
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy-~~~~~~-----~y~~et~~~~~~~~~~w~~WRr~~i~~~v~ 253 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGY-DPDTVT-----LYRYETGKGPPSNPDQWTDWRRDNITALVA 253 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCcccc-CchHHH-----HHHhhccCCCCCCHHHHHHHHHHhHHHHHH
Confidence 5778888888888999999999999983 34432221 111110 111112333333333 4678999999
Q ss_pred HHHHHhccCCcEEEEEEcC-C--cCcccccC-----hhhH--hhhccEeEEeccc
Q psy11626 358 EMKAAFRAENFLLSASVLP-H--VNYTVYFD-----VPSI--TQHLDMITLHAYD 402 (596)
Q Consensus 358 elr~~l~~~~~~Ls~av~~-~--~~~~~~~d-----~~~i--~~~vD~i~vM~YD 402 (596)
+|...+++..--+.++|.| + ....-.|+ ...- .-++|++..|.|=
T Consensus 254 ~i~~~VKavKp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 254 QISQTVKAVKPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred HHHHHHHhhCCCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 9999999875545444444 2 11001122 1111 3578999999884
No 123
>PRK09989 hypothetical protein; Provisional
Probab=60.02 E-value=1.9e+02 Score=29.01 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcE
Q psy11626 290 KSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFL 369 (596)
Q Consensus 290 ~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~ 369 (596)
...++.+++..++-|.+-+-+-..+.. . + ....+.......-++++.+.+...+..
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~~~-~--------------------~---~~~~~~~~~~~~~l~~l~~~a~~~gv~ 139 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGVVP-A--------------------G---EDAERYRAVFIDNLRYAADRFAPHGKR 139 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccCCC-C--------------------C---CCHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 356788888889998887754333210 0 0 001122344566667777777777877
Q ss_pred EEEE
Q psy11626 370 LSAS 373 (596)
Q Consensus 370 Ls~a 373 (596)
|.+-
T Consensus 140 l~lE 143 (258)
T PRK09989 140 ILVE 143 (258)
T ss_pred EEEE
Confidence 7654
No 124
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=59.87 E-value=9.7 Score=31.43 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=33.3
Q ss_pred cCCCCCCChhhhhhhcCC-HHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 107 GGFEDDDDKEKYLEVLDD-PKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 107 GG~~~~~~s~~f~~~~~~-~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
|-|.+. ...|.....+ +..|+.+++.|++.+..-.||||-+|
T Consensus 32 ~~W~~~--~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~D 74 (79)
T PF14885_consen 32 SEWPGY--PGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFAD 74 (79)
T ss_pred eecCCC--CceeeeccCCcchHHHHHHHHHHHHHhcCccceeeee
Confidence 556653 4455555555 99999999999999999999999887
No 125
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=58.96 E-value=1.6e+02 Score=27.75 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=52.6
Q ss_pred cccEEEEEEEEecCCCceEEecC-CccccccccchhhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHH
Q psy11626 50 MCTHLVYGFAGISDSGDYHIKSL-DKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYR 128 (596)
Q Consensus 50 ~~Thviyafa~v~~~g~~~~~~~-~~~~d~~~~~~~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r 128 (596)
.|.+||+-+..... ..+..... ..... ......+..+++++.+. |+||++.++-+.. -|. . .+.+..
T Consensus 33 GidtlIlq~~~~~~-~~~yps~~~~~~~~---~~~~d~l~~~L~~A~~~-Gmkv~~Gl~~~~~-----~w~-~-~~~~~~ 100 (166)
T PF14488_consen 33 GIDTLILQWTGYGG-FAFYPSKLSPGGFY---MPPVDLLEMILDAADKY-GMKVFVGLYFDPD-----YWD-Q-GDLDWE 100 (166)
T ss_pred CCcEEEEEEeecCC-cccCCccccCcccc---CCcccHHHHHHHHHHHc-CCEEEEeCCCCch-----hhh-c-cCHHHH
Confidence 58889988776652 21111111 00111 11245777888877775 9999999985422 233 1 444444
Q ss_pred HHHHHHHHHHH-HHhC----CCeeeeeccCCCc
Q psy11626 129 KSFIETTVAAL-KKYG----FNGLDLAWEFPVV 156 (596)
Q Consensus 129 ~~f~~si~~~l-~~~g----fDGvdiDwE~p~~ 156 (596)
..+...|++-+ +.|| |.|--|-.|....
T Consensus 101 ~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~ 133 (166)
T PF14488_consen 101 AERNKQVADELWQRYGHHPSFYGWYIPYEIDDY 133 (166)
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecccCCc
Confidence 33333333333 2354 9999999996543
No 126
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=57.68 E-value=33 Score=36.31 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
+.+|.+|+-|.+ .++.+.+.|+||..+|+.-|.
T Consensus 129 ftnp~a~~ww~~-~~~~~~~~Gvdg~w~D~~Ep~ 161 (339)
T cd06604 129 FTNPKVREWWGS-LYKKFVDLGVDGIWNDMNEPA 161 (339)
T ss_pred CCChHHHHHHHH-HHHHHhhCCCceEeecCCCcc
Confidence 457888886655 445566899999999998664
No 127
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=56.55 E-value=16 Score=39.29 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 124 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 124 ~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
.++.++.|+.=++..++.+.=.||.|++-.|.....- -| ....-+|++ -+.+...+||++|+.+|+
T Consensus 149 k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~-------~W--~~~~QEG~~-----~~~~e~a~vI~~L~~~L~ 214 (384)
T PF14587_consen 149 KPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW-------NW--AGGSQEGCH-----FTNEEQADVIRALDKALK 214 (384)
T ss_dssp -TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS--------G--G--SS-B---------HHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC-------CC--CCCCcCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 4567889999999988888888999998766655321 13 111122332 467888999999999999
Q ss_pred hcCcEEEEEec
Q psy11626 204 AENFLLSASVL 214 (596)
Q Consensus 204 ~~~~~ls~av~ 214 (596)
++++...|+++
T Consensus 215 ~~GL~t~I~~~ 225 (384)
T PF14587_consen 215 KRGLSTKISAC 225 (384)
T ss_dssp HHT-S-EEEEE
T ss_pred hcCCCceEEec
Confidence 99876665543
No 128
>PRK12568 glycogen branching enzyme; Provisional
Probab=56.32 E-value=1.7e+02 Score=34.40 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=27.3
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCcccee
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLA 311 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld 311 (596)
...++..|+.+++++.-+++++++||+-+|
T Consensus 379 N~~~peVr~~li~~a~~Wl~eyhIDG~R~D 408 (730)
T PRK12568 379 NYGRPEVTAYLLGSALEWIEHYHLDGLRVD 408 (730)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCceEEEEc
Confidence 456789999999999999999999999999
No 129
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=55.05 E-value=1.4e+02 Score=34.33 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
..++..|+.+++.+.-+++++++||.-+|.
T Consensus 267 ~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~ 296 (613)
T TIGR01515 267 YGRPEVRNFLVANALYWAEFYHIDGLRVDA 296 (613)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEcC
Confidence 467899999999999999999999999996
No 130
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=53.74 E-value=2.6e+02 Score=30.25 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCeeeeecc--CCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEE
Q psy11626 135 TVAALKKYGFNGLDLAWE--FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSAS 212 (596)
Q Consensus 135 i~~~l~~~gfDGvdiDwE--~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~a 212 (596)
.++.+.+.|||||.|... +|... +.+.-..-+++||+.++..|+.++..
T Consensus 37 ~i~~la~~GfdgVE~~~~dl~P~~~-----------------------------~~~e~~~~~~~lk~~L~~~GL~v~~v 87 (382)
T TIGR02631 37 AVHKLAELGAYGVTFHDDDLIPFGA-----------------------------PPQERDQIVRRFKKALDETGLKVPMV 87 (382)
T ss_pred HHHHHHHhCCCEEEecccccCCCCC-----------------------------ChhHHHHHHHHHHHHHHHhCCeEEEe
Confidence 455688899999999743 22211 11222345789999999999887764
Q ss_pred e
Q psy11626 213 V 213 (596)
Q Consensus 213 v 213 (596)
.
T Consensus 88 ~ 88 (382)
T TIGR02631 88 T 88 (382)
T ss_pred e
Confidence 3
No 131
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=53.72 E-value=2.4e+02 Score=28.29 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEE
Q psy11626 134 TTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA 211 (596)
Q Consensus 134 si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~ 211 (596)
..+..+.+.||++|.|..+.|..... ...-...+++||+.+...++.|++
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKG----------------------------VRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCC----------------------------CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 35677888999999999888744210 001123477788888888876654
No 132
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.62 E-value=1.3e+02 Score=31.64 Aligned_cols=72 Identities=14% Similarity=0.251 Sum_probs=46.3
Q ss_pred CCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccc
Q psy11626 97 QPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTV 176 (596)
Q Consensus 97 ~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~ 176 (596)
.....+.+.|+|.+. +.|++ .+.++.++|||+|||+-=.|...... .+.|+..
T Consensus 52 ~~e~p~~vQl~g~~p-----------------~~~~~-aA~~~~~~g~d~IDlN~GCP~~~v~~--~g~Gs~L------- 104 (318)
T TIGR00742 52 PEESPVALQLGGSDP-----------------NDLAK-CAKIAEKRGYDEINLNVGCPSDRVQN--GNFGACL------- 104 (318)
T ss_pred CCCCcEEEEEccCCH-----------------HHHHH-HHHHHHhCCCCEEEEECCCCHHHhCC--CCeehHh-------
Confidence 346678889988654 22332 45566778999999999888664321 1122211
Q ss_pred cCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 177 TGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 177 ~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
..+.+....+++++|++.+
T Consensus 105 --------l~~p~~~~~iv~av~~~~~ 123 (318)
T TIGR00742 105 --------MGNADLVADCVKAMQEAVN 123 (318)
T ss_pred --------hcCHHHHHHHHHHHHHHhC
Confidence 1356777888899988764
No 133
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=50.33 E-value=80 Score=30.94 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=44.9
Q ss_pred hhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccc
Q psy11626 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKK 174 (596)
Q Consensus 95 ~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~ 174 (596)
....+..++++|+|... +.|++ .+..+++.|||||+|+-=.|....+ ++
T Consensus 50 ~~~~~~p~~~qi~g~~~-----------------~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~-------------~~ 98 (231)
T cd02801 50 RNPEERPLIVQLGGSDP-----------------ETLAE-AAKIVEELGADGIDLNMGCPSPKVT-------------KG 98 (231)
T ss_pred cCccCCCEEEEEcCCCH-----------------HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHh-------------CC
Confidence 34468999999998653 23333 3345566899999999877643211 11
Q ss_pred cccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 175 TVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 175 ~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
...|. -..+......+++++|++.+
T Consensus 99 ~~G~~----l~~~~~~~~eii~~v~~~~~ 123 (231)
T cd02801 99 GAGAA----LLKDPELVAEIVRAVREAVP 123 (231)
T ss_pred Ceeeh----hcCCHHHHHHHHHHHHHhcC
Confidence 11111 11244667788888888775
No 134
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=49.54 E-value=95 Score=32.45 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=52.2
Q ss_pred hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeeeeccCCCcCccccc
Q psy11626 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG-FNGLDLAWEFPVVTEKHES 162 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~g-fDGvdiDwE~p~~~~~~~~ 162 (596)
+..++++.++++..++..+++||-|.+. +.|. .+++.+++.| .|.|+|+.-.|...+..
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~~----~~~~--------------~~a~~~~~~g~ad~iElN~ScPn~~~~~-- 136 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLSP----EETH--------------TILKKIQASDFNGLVELNLSCPNVPGKP-- 136 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCcH----HHHH--------------HHHHHHhhcCCCCEEEEECCCCCCCCcc--
Confidence 4455666666666567889999977653 2332 2233456778 89999999999654210
Q ss_pred cccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 163 YTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
.+ ..|.+.+..+++.+|++.+
T Consensus 137 -~~-------------------g~d~~~~~~i~~~v~~~~~ 157 (310)
T PRK02506 137 -QI-------------------AYDFETTEQILEEVFTYFT 157 (310)
T ss_pred -cc-------------------ccCHHHHHHHHHHHHHhcC
Confidence 00 1256778899999998764
No 135
>KOG1552|consensus
Probab=49.48 E-value=43 Score=33.93 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=27.8
Q ss_pred eEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCC-CCCcEEEeeecceeee
Q psy11626 396 ITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGV-ELQKLVLGIPTFGRSW 459 (596)
Q Consensus 396 i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~Gv-p~~KLvlGvp~YG~~~ 459 (596)
+|||+|||.|.-...+ -.+-. .....++.+.+ |++..- ++++|+| ||+|-
T Consensus 89 ~nv~~~DYSGyG~S~G---~psE~------n~y~Di~avye-~Lr~~~g~~~~Iil----~G~Si 139 (258)
T KOG1552|consen 89 CNVVSYDYSGYGRSSG---KPSER------NLYADIKAVYE-WLRNRYGSPERIIL----YGQSI 139 (258)
T ss_pred ceEEEEecccccccCC---Ccccc------cchhhHHHHHH-HHHhhcCCCceEEE----EEecC
Confidence 6899999998643321 11111 11224555554 454433 7888875 77753
No 136
>KOG2331|consensus
Probab=49.42 E-value=54 Score=35.49 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=48.6
Q ss_pred CcccCCChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHH
Q psy11626 279 PLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIRE 358 (596)
Q Consensus 279 p~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flke 358 (596)
.-.+++++.+-+.-++.++++.+-.||||==|+.|.-. ....-.++..|++.
T Consensus 142 c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i----------------------------~~~~i~~l~~F~~~ 193 (526)
T KOG2331|consen 142 CKEFLATEESVEMTVERLVELARFFGFDGWLINIENKI----------------------------DLAKIPNLIQFVSH 193 (526)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeecc----------------------------ChhhCccHHHHHHH
Confidence 34678888888899999999999999999999999432 22345678889999
Q ss_pred HHHHhccC
Q psy11626 359 MKAAFRAE 366 (596)
Q Consensus 359 lr~~l~~~ 366 (596)
|.+++++.
T Consensus 194 Lt~~~~~~ 201 (526)
T KOG2331|consen 194 LTKVLHSS 201 (526)
T ss_pred HHHHHhhc
Confidence 99998875
No 137
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=48.79 E-value=24 Score=40.54 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=38.9
Q ss_pred hHHHHHHHhhhCCCceEEEE---EcCCCCCCChhhhhhhcCCHHHHHH-HHHHHHHHHHHhCCCeeeeeccCCCcCcccc
Q psy11626 86 LFKQITALKTFQPNLNIMLS---VGGFEDDDDKEKYLEVLDDPKYRKS-FIETTVAALKKYGFNGLDLAWEFPVVTEKHE 161 (596)
Q Consensus 86 ~~~~~~~lk~~~p~lkvlls---iGG~~~~~~s~~f~~~~~~~~~r~~-f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~ 161 (596)
.+.-+.+.|++||++|+.+- -=||-.. .+..-..++..... .++-|...-+.|| +||||--+-.
T Consensus 114 e~~L~~eAKkrNP~ikl~~L~W~~PgW~~~----g~~~~~~~~~~~a~Y~~~wl~ga~~~~g---l~idYvg~~N----- 181 (669)
T PF02057_consen 114 EWWLMAEAKKRNPNIKLYGLPWGFPGWVGN----GWNWPYDNPQLTAYYVVSWLLGAKKTHG---LDIDYVGIWN----- 181 (669)
T ss_dssp HHHHHHHHHHH-TT-EEEEEES-B-GGGGT----TSS-TTSSHHHHHHHHHHHHHHHHHHH--------EE-S-T-----
T ss_pred hhhhHHHHHhhCCCCeEEEeccCCCccccC----CCCCcccchhhhhHHHHHHHHHHHHHhC---CCceEechhh-----
Confidence 34556678999999999843 2245431 11111112222222 2333444446666 5677754321
Q ss_pred ccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcE
Q psy11626 162 SYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFL 208 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ 208 (596)
++..=...++.||.+|+.++|.
T Consensus 182 -------------------------Er~~~~~~ik~lr~~l~~~gy~ 203 (669)
T PF02057_consen 182 -------------------------ERGFDVNYIKWLRKALNSNGYN 203 (669)
T ss_dssp -------------------------TS---HHHHHHHHHHHHHTT-T
T ss_pred -------------------------ccCCChhHHHHHHHHHhhcccc
Confidence 1222246789999999998764
No 138
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=48.65 E-value=49 Score=34.18 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCeeeeecc-CCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcE
Q psy11626 130 SFIETTVAALKKYGFNGLDLAWE-FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFL 208 (596)
Q Consensus 130 ~f~~si~~~l~~~gfDGvdiDwE-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ 208 (596)
+.--+|.+-+.+.|||-|.||+- +|...+. +.-.. ...........+.+..||.--|++|. .-
T Consensus 196 eYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~-----l~~A~--------~~~n~~~m~~~~Al~sfL~yArE~l~---vp 259 (400)
T COG1306 196 EYNVTIAKEAAKFGFDEIQFDYIRFPADGGG-----LDKAL--------NYRNTDNMTKSEALQSFLHYAREELE---VP 259 (400)
T ss_pred hhhHHHHHHHHHcCccceeeeEEEccCCCCc-----hhhhh--------cccccccCChHHHHHHHHHHHHHhcc---cc
Confidence 34456778888999999999984 6765431 11111 11112233345678888888898887 34
Q ss_pred EEEEecCCcccc-----cccchhhhhcccceeeeecccccc
Q psy11626 209 LSASVLPHVNYT-----VYFDVPSITQHLDMITLHAYDFLY 244 (596)
Q Consensus 209 ls~av~~~~~~~-----~~~~~~~~~~~~d~i~~m~Yd~~~ 244 (596)
+|+.+-...+|. .+=+++.+++++|.|.-|.|-=|+
T Consensus 260 IS~DIYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 260 ISADIYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred eEEEeecccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 777765544442 344788888888888888886554
No 139
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.74 E-value=97 Score=32.72 Aligned_cols=93 Identities=13% Similarity=0.226 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeec---------CcccCCccccccccceecccccccCCCCCCCccChHHHH-HHHHH
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEF---------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFT-LLIRE 358 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~---------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~-~flke 358 (596)
.+.|++.. +.+++.|||||+|.... |..-. . .++-. ++.+++..|. ..|++
T Consensus 148 i~~~~~aA-~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~------------R-~D~yG-----GslenR~rf~~EiI~a 208 (338)
T cd04733 148 IDRFAHAA-RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNK------------R-TDEYG-----GSLENRARLLLEIYDA 208 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEchhhhhHHHHhcCCcCCC------------C-CccCC-----CCHHHHHHHHHHHHHH
Confidence 45666654 56788899999999875 32100 0 11111 2345555554 47777
Q ss_pred HHHHhccCCcEEEEEEcCCcCcccccCh-------hhHhhh-ccEeEEecc
Q psy11626 359 MKAAFRAENFLLSASVLPHVNYTVYFDV-------PSITQH-LDMITLHAY 401 (596)
Q Consensus 359 lr~~l~~~~~~Ls~av~~~~~~~~~~d~-------~~i~~~-vD~i~vM~Y 401 (596)
+|+++.. ++.|.+.+.+.......++. +.|.+. +|+|+|..-
T Consensus 209 IR~avG~-d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 209 IRAAVGP-GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred HHHHcCC-CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 7777753 46677766542111122222 233343 788888653
No 140
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=46.78 E-value=2.3e+02 Score=28.89 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEE
Q psy11626 293 IETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA 372 (596)
Q Consensus 293 i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~ 372 (596)
+++-++.+.+.|+||+=|-=+ +.++ ..++.+.+++.|+.+..
T Consensus 108 ~e~F~~~~~~aGvdgviipDL-------------------------------P~ee-------~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDL-------------------------------PYEE-------SDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCC-------------------------------CHHH-------HHHHHHHHHHcCCCEEE
Confidence 455677778899999865433 1112 34666777778888888
Q ss_pred EEcCCcCcccccChhhHhhhcc-EeEEec
Q psy11626 373 SVLPHVNYTVYFDVPSITQHLD-MITLHA 400 (596)
Q Consensus 373 av~~~~~~~~~~d~~~i~~~vD-~i~vM~ 400 (596)
.++|..... .+..+.+.++ ||-+|+
T Consensus 150 lv~PtT~~e---ri~~i~~~a~gFIY~vS 175 (263)
T CHL00200 150 LIAPTSSKS---RIQKIARAAPGCIYLVS 175 (263)
T ss_pred EECCCCCHH---HHHHHHHhCCCcEEEEc
Confidence 888875432 4678899998 999988
No 141
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=46.47 E-value=87 Score=33.21 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccC---------CCcCccccccccccchhcccccccCCCCCCCccchH-HHHHHHH
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEF---------PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHRE-HFTLLIR 196 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~---------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~-~~~~ll~ 196 (596)
-.+.|++.+ ..+++-|||||+|.--+ |... +-.+...|+- +.+. -..++++
T Consensus 150 ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N-------------~R~D~yGGsl-----enR~rf~~eii~ 210 (338)
T cd02933 150 IVADFRQAA-RNAIEAGFDGVEIHGANGYLIDQFLRDGSN-------------KRTDEYGGSI-----ENRARFLLEVVD 210 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEccccchhHHHhcCCccC-------------CCCCcCCCcH-----HHhhhHHHHHHH
Confidence 345677654 55666799999999765 3221 1111222321 2233 4467888
Q ss_pred HHHHHhhhcCcEEEEEecCC
Q psy11626 197 EMKAAFRAENFLLSASVLPH 216 (596)
Q Consensus 197 ~Lr~~l~~~~~~ls~av~~~ 216 (596)
++|++.+.. .|++-+.+.
T Consensus 211 air~~vg~d--~v~vRis~~ 228 (338)
T cd02933 211 AVAEAIGAD--RVGIRLSPF 228 (338)
T ss_pred HHHHHhCCC--ceEEEECcc
Confidence 888888654 366666543
No 142
>PLN02899 alpha-galactosidase
Probab=45.99 E-value=2.6e+02 Score=32.09 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccceeeecC
Q psy11626 288 YRKSFIETTVAALKKYGFNGLDLAWEFP 315 (596)
Q Consensus 288 ~r~~~i~~~i~~~~~~g~dGi~ld~e~p 315 (596)
.-+.|++++.+.+-+.|+|=+|+||-++
T Consensus 192 ~g~a~~~Sla~tfAsWGVDyLKyD~c~~ 219 (633)
T PLN02899 192 AGKAFLRSLYDQYAEWGVDFVKHDCVFG 219 (633)
T ss_pred chhhhhHHHHHHHHHhCCCEEEEcCCCC
Confidence 4467999999999999999999998754
No 143
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.93 E-value=1.6e+02 Score=31.44 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHH-HHHHHHHHHhcc--
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFT-LLIREMKAAFRA-- 365 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~-~flkelr~~l~~-- 365 (596)
.+.|++.... +++.|||||+|...+= |-+..+..-..++-+.. ..++.+++..|. ..++++|+++..
T Consensus 143 i~~f~~aA~~-a~~aGfDgVeih~ahG--------yLl~qFlsp~~N~R~D~-yGGslenR~r~~~eii~~vr~~vg~~~ 212 (353)
T cd04735 143 IDAFGEATRR-AIEAGFDGVEIHGANG--------YLIQQFFSPHSNRRTDE-WGGSLENRMRFPLAVVKAVQEVIDKHA 212 (353)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEccccc--------hHHHHhcCCccCCCCcc-cCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence 4667765544 5668999999997530 00000000000010111 112345566665 477888888873
Q ss_pred -CCcEEEEEEcCCcCccccc------Ch-hhHhhh-ccEeEEecccC
Q psy11626 366 -ENFLLSASVLPHVNYTVYF------DV-PSITQH-LDMITLHAYDF 403 (596)
Q Consensus 366 -~~~~Ls~av~~~~~~~~~~------d~-~~i~~~-vD~i~vM~YD~ 403 (596)
.++.+.+.+.+......+. ++ +.+.+. +|||+|....+
T Consensus 213 ~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 213 DKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred CCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 4677777776543211122 22 233333 79999977543
No 144
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=45.68 E-value=1.1e+02 Score=32.51 Aligned_cols=100 Identities=12% Similarity=0.190 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccceee--ecCcccCCccccccccceecc-cccccCCCCCCCccCh-HHHHHHHHHHHHHh
Q psy11626 288 YRKSFIETTVAALKKYGFNGLDLAW--EFPVVTEKHESYTLGSIWHKI-KKTVTGPKDDNPTLHR-EHFTLLIREMKAAF 363 (596)
Q Consensus 288 ~r~~~i~~~i~~~~~~g~dGi~ld~--e~p~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~d~-~~f~~flkelr~~l 363 (596)
..+.|++... .+++-|||||+|.. +|+..+ +=+-..|- .++-+| +.+.+ ......++++|+++
T Consensus 139 ii~~f~~AA~-ra~~aGfDgVeih~ahGyLl~q-------Flsp~~N~RtD~yGG-----slenR~r~~~eiv~~ir~~v 205 (343)
T cd04734 139 IIAAFADAAR-RCQAGGLDGVELQAAHGHLIDQ-------FLSPLTNRRTDEYGG-----SLENRMRFLLEVLAAVRAAV 205 (343)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEccccchHHHH-------hhCCCcCCCCCcCCC-----CHHHHhHHHHHHHHHHHHHc
Confidence 3466776554 55668999999999 543110 00000000 111112 33444 34445777777776
Q ss_pred ccCCcEEEEEEcCCcCcccccC------h-hhHhhh--ccEeEEecc
Q psy11626 364 RAENFLLSASVLPHVNYTVYFD------V-PSITQH--LDMITLHAY 401 (596)
Q Consensus 364 ~~~~~~Ls~av~~~~~~~~~~d------~-~~i~~~--vD~i~vM~Y 401 (596)
.. .+.+.+.+.+......+.+ + +.|.+. +|+|+|..-
T Consensus 206 g~-~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 206 GP-DFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred CC-CCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 42 4666666665432222222 2 234443 799998543
No 145
>PRK05402 glycogen branching enzyme; Provisional
Probab=44.74 E-value=1.7e+02 Score=34.58 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=27.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
...++..|+.+++++.-+++++++||.-+|-
T Consensus 375 n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~ 405 (726)
T PRK05402 375 NYGRNEVRNFLVANALYWLEEFHIDGLRVDA 405 (726)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcEEEECC
Confidence 4567889999999888888899999999994
No 146
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=44.24 E-value=64 Score=38.24 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeecc---------CCCcCccccccccccchhcccccccCCCCCCCccc-hHHHHHHHH
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWE---------FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH-REHFTLLIR 196 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE---------~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d-~~~~~~ll~ 196 (596)
-.+.|++.+. .+++-|||||+|+-= .|... +-.+...|+- +. .....++++
T Consensus 549 ~i~~f~~aA~-~a~~aGfDgveih~ahGyLl~qFlsp~~N-------------~RtD~yGGsl-----enR~r~~~eiv~ 609 (765)
T PRK08255 549 VRDDFVAAAR-RAAEAGFDWLELHCAHGYLLSSFISPLTN-------------QRTDEYGGSL-----ENRLRYPLEVFR 609 (765)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCCCC-------------CCCCCCCCCH-----HHHhHHHHHHHH
Confidence 4467777665 456689999999865 33321 1111122221 11 233466777
Q ss_pred HHHHHhhhcCcEEEEEecCCc
Q psy11626 197 EMKAAFRAENFLLSASVLPHV 217 (596)
Q Consensus 197 ~Lr~~l~~~~~~ls~av~~~~ 217 (596)
.+|++.+. ++.|++-+.+..
T Consensus 610 ~ir~~~~~-~~~v~~ri~~~~ 629 (765)
T PRK08255 610 AVRAVWPA-EKPMSVRISAHD 629 (765)
T ss_pred HHHHhcCC-CCeeEEEEcccc
Confidence 77777653 677888777643
No 147
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.91 E-value=2.9e+02 Score=27.64 Aligned_cols=44 Identities=2% Similarity=-0.001 Sum_probs=32.4
Q ss_pred HHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEeccc
Q psy11626 356 IREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 402 (596)
Q Consensus 356 lkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD 402 (596)
++++.+.+++.|+...+++.|..... .+..+.+.+|.+.+|+-+
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e---~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDL---LIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHhCCCEEEEEeC
Confidence 44666777778999999998865432 356788889999999753
No 148
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=43.14 E-value=84 Score=33.23 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhccccccc
Q psy11626 98 PNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 177 (596)
Q Consensus 98 p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
....+.+.|+|.+. +.|++ .+..+++.|||||||+--.|...... .+.|+.
T Consensus 63 ~e~p~~vQl~g~~p-----------------~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~--~~~Gs~--------- 113 (333)
T PRK11815 63 EEHPVALQLGGSDP-----------------ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQN--GRFGAC--------- 113 (333)
T ss_pred CCCcEEEEEeCCCH-----------------HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccC--CCeeeH---------
Confidence 35678899998764 23333 34567789999999999888653211 111111
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHh
Q psy11626 178 GPKDDNPTLHREHFTLLIREMKAAF 202 (596)
Q Consensus 178 g~~~~~~~~d~~~~~~ll~~Lr~~l 202 (596)
-..+.+....+++++|++.
T Consensus 114 ------L~~~p~~~~eiv~avr~~v 132 (333)
T PRK11815 114 ------LMAEPELVADCVKAMKDAV 132 (333)
T ss_pred ------HhcCHHHHHHHHHHHHHHc
Confidence 1134567778888888876
No 149
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.65 E-value=1e+02 Score=30.09 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEec
Q psy11626 135 TVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVL 214 (596)
Q Consensus 135 i~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~ 214 (596)
.++.+.+.|.|-|-|.+|-. ++...+++.+|+ .|....+|+.
T Consensus 72 ~i~~~~~~g~~~i~~H~E~~----------------------------------~~~~~~i~~ik~----~g~k~Gialn 113 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHAEAT----------------------------------EDPKETIKYIKE----AGIKAGIALN 113 (201)
T ss_dssp HHHHHHHHT-SEEEEEGGGT----------------------------------TTHHHHHHHHHH----TTSEEEEEE-
T ss_pred HHHHHHhcCCCEEEEcccch----------------------------------hCHHHHHHHHHH----hCCCEEEEEE
Confidence 34445677999999999921 233455655555 5788889988
Q ss_pred CCcccccccchhhhhcccceeeeeccc
Q psy11626 215 PHVNYTVYFDVPSITQHLDMITLHAYD 241 (596)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~d~i~~m~Yd 241 (596)
|..... .++.+.+.+|+|.+|+=+
T Consensus 114 P~T~~~---~~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 114 PETPVE---ELEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp TTS-GG---GGTTTGCCSSEEEEESS-
T ss_pred CCCCch---HHHHHhhhcCEEEEEEec
Confidence 765432 234455667777777654
No 150
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=42.07 E-value=1.3e+02 Score=31.46 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCc
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVV 156 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~ 156 (596)
..+++.|+-|.+.+.+.+.+.|+||+=+|+-.|..
T Consensus 128 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~ 162 (319)
T cd06591 128 ATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEY 162 (319)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCc
Confidence 46788898899999999999999999999977654
No 151
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=41.97 E-value=1.5e+02 Score=31.51 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeec
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEF 314 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~ 314 (596)
.+.|++.. +.+++.|||||+|...+
T Consensus 141 i~~f~~aA-~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 141 VLAFKQAA-VRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 45666644 55567899999999874
No 152
>PLN02411 12-oxophytodienoate reductase
Probab=41.85 E-value=76 Score=34.38 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHH-HHHHHHHHHHhhhc
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHF-TLLIREMKAAFRAE 205 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~-~~ll~~Lr~~l~~~ 205 (596)
-.+.|++... ..++-|||||+|.=-+--.-.+ =+...+|+=.+.+.|+- +.|..| .+.|+++|++.++.
T Consensus 163 ii~~f~~AA~-rA~~AGFDGVEIH~AhGYLl~Q----FLSp~tN~RtDeYGGSl-----ENR~RF~lEIi~aVr~~vg~d 232 (391)
T PLN02411 163 VVEHYRQAAL-NAIRAGFDGIEIHGAHGYLIDQ----FLKDGINDRTDEYGGSI-----ENRCRFLMQVVQAVVSAIGAD 232 (391)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEccccchHHHH----hCCCccCCCCCcCCCCH-----HHHhHHHHHHHHHHHHHcCCC
Confidence 3457777654 4556899999998533100000 00011222122222332 445555 56788888888754
Q ss_pred CcEEEEEecCC
Q psy11626 206 NFLLSASVLPH 216 (596)
Q Consensus 206 ~~~ls~av~~~ 216 (596)
+ |.+-++|.
T Consensus 233 -~-vgvRiS~~ 241 (391)
T PLN02411 233 -R-VGVRVSPA 241 (391)
T ss_pred -e-EEEEEccc
Confidence 4 77777764
No 153
>PRK12313 glycogen branching enzyme; Provisional
Probab=41.80 E-value=3.4e+02 Score=31.40 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
..++..|+.+++.+.-+++++++||.-+|-
T Consensus 281 ~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~ 310 (633)
T PRK12313 281 LGKNEVRSFLISSALFWLDEYHLDGLRVDA 310 (633)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEcC
Confidence 467899999999888888899999999993
No 154
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=41.64 E-value=82 Score=35.75 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=42.8
Q ss_pred hhhHHHHHHHhhhCCCceEEEEE--c--CCCCC---CChhhhh----------hhcCCH---HHHHHHHHHHHHHHHHhC
Q psy11626 84 KELFKQITALKTFQPNLNIMLSV--G--GFEDD---DDKEKYL----------EVLDDP---KYRKSFIETTVAALKKYG 143 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsi--G--G~~~~---~~s~~f~----------~~~~~~---~~r~~f~~si~~~l~~~g 143 (596)
...+++|++..+++ |++|+|=+ . |.... .-...|. --..++ ..|+-+++++.-|+++||
T Consensus 159 ~~e~k~lV~~aH~~-Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 159 PDDLKALVDAAHGL-GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 45677877755554 99999743 1 11000 0000111 012334 888999999999999999
Q ss_pred CCeeeeec
Q psy11626 144 FNGLDLAW 151 (596)
Q Consensus 144 fDGvdiDw 151 (596)
+||+-||=
T Consensus 238 iDGfR~D~ 245 (542)
T TIGR02402 238 FDGLRLDA 245 (542)
T ss_pred CcEEEEeC
Confidence 99999994
No 155
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=41.14 E-value=99 Score=32.42 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccC
Q psy11626 99 NLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTG 178 (596)
Q Consensus 99 ~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g 178 (596)
...+.+.|+|.+. +.|++.+ ..+.+.|||+|||+-=.|...... ++.|+..
T Consensus 62 e~p~~vQl~g~~p-----------------~~~~~aA-~~~~~~g~d~IdiN~GCP~~~v~~--~g~Gs~L--------- 112 (312)
T PRK10550 62 GTLVRIQLLGQYP-----------------QWLAENA-ARAVELGSWGVDLNCGCPSKTVNG--SGGGATL--------- 112 (312)
T ss_pred CCcEEEEeccCCH-----------------HHHHHHH-HHHHHcCCCEEEEeCCCCchHHhc--CCCchHh---------
Confidence 4667888888654 3344433 345668999999999998743211 1112111
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEec
Q psy11626 179 PKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVL 214 (596)
Q Consensus 179 ~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~ 214 (596)
..+.....++++++|++.+. ++-||+-+.
T Consensus 113 ------l~~~~~~~eiv~avr~~~~~-~~pVsvKiR 141 (312)
T PRK10550 113 ------LKDPELIYQGAKAMREAVPA-HLPVTVKVR 141 (312)
T ss_pred ------hcCHHHHHHHHHHHHHhcCC-CcceEEEEE
Confidence 12457788889999988743 345666543
No 156
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=40.93 E-value=1e+02 Score=34.65 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=59.0
Q ss_pred HHHHHHHhhhCCCceEEEEEcC---CCCCCC---hhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccc
Q psy11626 87 FKQITALKTFQPNLNIMLSVGG---FEDDDD---KEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKH 160 (596)
Q Consensus 87 ~~~~~~lk~~~p~lkvllsiGG---~~~~~~---s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~ 160 (596)
+.-|.++++.+|++|++.|-=- |--.+. ......-...++.++.+++=+++|++.|.=-||+|+=--+......
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~ 235 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDN 235 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCG
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCC
Confidence 4455666777889999987621 211100 0011111123467899999999999999999999987555443221
Q ss_pred c----ccccccchhcccccccCCCCCCCccchHHHHHHHHH-HHHHhhhcCc
Q psy11626 161 E----SYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIRE-MKAAFRAENF 207 (596)
Q Consensus 161 ~----~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~-Lr~~l~~~~~ 207 (596)
. +.-=++.| ..+....||+. |+-+|++.++
T Consensus 236 ~~~~~~~~~s~~~-----------------t~~~~~~Fi~~~LgP~l~~~~~ 270 (496)
T PF02055_consen 236 GSDPNYPWPSMGW-----------------TPEEQADFIKNYLGPALRKAGL 270 (496)
T ss_dssp GGSTT-SSC--B-------------------HHHHHHHHHHTHHHHHHTSTT
T ss_pred CCCCCCCCCcCCC-----------------CHHHHHHHHHHHHHHHHHhcCC
Confidence 0 00001222 34677888886 9999988754
No 157
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=39.98 E-value=76 Score=33.29 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEE
Q psy11626 292 FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLS 371 (596)
Q Consensus 292 ~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls 371 (596)
|++ ..+.+.+.|+|+|||+++-|...- .+...|.+ -..+......+++++++++.. ++-||
T Consensus 77 ~~~-aA~~~~~~g~d~IdiN~GCP~~~v--------------~~~g~Gs~---Ll~~~~~~~eiv~avr~~~~~-~~pVs 137 (312)
T PRK10550 77 LAE-NAARAVELGSWGVDLNCGCPSKTV--------------NGSGGGAT---LLKDPELIYQGAKAMREAVPA-HLPVT 137 (312)
T ss_pred HHH-HHHHHHHcCCCEEEEeCCCCchHH--------------hcCCCchH---hhcCHHHHHHHHHHHHHhcCC-CcceE
Confidence 444 344557789999999999986311 00001111 123455667778888887643 35566
Q ss_pred EEEcCCcCc-ccccChhhHhhh--ccEeEEec
Q psy11626 372 ASVLPHVNY-TVYFDVPSITQH--LDMITLHA 400 (596)
Q Consensus 372 ~av~~~~~~-~~~~d~~~i~~~--vD~i~vM~ 400 (596)
+-+...... ....++..+.+. +|.|.|.+
T Consensus 138 vKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 138 VKVRLGWDSGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred EEEECCCCCchHHHHHHHHHHhcCCCEEEECC
Confidence 665543211 112333343332 88888853
No 158
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=39.39 E-value=2.9e+02 Score=27.45 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEeccc
Q psy11626 353 TLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 402 (596)
Q Consensus 353 ~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD 402 (596)
..+++.+|+. |....+++.|..... .+..+.+.+|+|.||+-+
T Consensus 100 ~~~l~~Ir~~----g~k~GlalnP~T~~~---~i~~~l~~vD~VlvMtV~ 142 (223)
T PRK08745 100 HRTIQLIKSH----GCQAGLVLNPATPVD---ILDWVLPELDLVLVMSVN 142 (223)
T ss_pred HHHHHHHHHC----CCceeEEeCCCCCHH---HHHHHHhhcCEEEEEEEC
Confidence 3455555544 777888888765432 345678899999999975
No 159
>PRK14706 glycogen branching enzyme; Provisional
Probab=39.05 E-value=1e+02 Score=35.68 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 123 DDPKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 123 ~~~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
.+++-|+-+++++.-||+++++||+-||
T Consensus 279 ~~~eVr~~l~~~~~~W~~e~~iDG~R~D 306 (639)
T PRK14706 279 GRNEVVMFLIGSALKWLQDFHVDGLRVD 306 (639)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 5788999999999999999999999999
No 160
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=38.55 E-value=1.3e+02 Score=32.38 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeeeccC---CCcCccccccccccchhcccccccCCCCCCCccchH-HHHHHHHHHHHH
Q psy11626 126 KYRKSFIETTVAALKKYGFNGLDLAWEF---PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHRE-HFTLLIREMKAA 201 (596)
Q Consensus 126 ~~r~~f~~si~~~l~~~gfDGvdiDwE~---p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~-~~~~ll~~Lr~~ 201 (596)
+-.+.|++.. ..+++-|||||+|.--+ .-..- +....|+-.+...|+. +.+. -..++|+++|++
T Consensus 147 ~ii~~f~~AA-~ra~~AGfDgVEih~ah~GyLl~qF------LSp~~N~RtDeyGGsl-----enR~rf~~eii~~vr~~ 214 (382)
T cd02931 147 TFVGKFGESA-VIAKEAGFDGVEIHAVHEGYLLDQF------TISLFNKRTDKYGGSL-----ENRLRFAIEIVEEIKAR 214 (382)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEeccccChHHHHh------cCCccCCCCCcCCCCH-----HHHhHHHHHHHHHHHHh
Confidence 4456777755 45566899999999733 20000 0000111111122221 3333 346788888888
Q ss_pred hhhcCcEEEEEecC
Q psy11626 202 FRAENFLLSASVLP 215 (596)
Q Consensus 202 l~~~~~~ls~av~~ 215 (596)
.+ .++.|++-+.+
T Consensus 215 ~g-~~f~v~vri~~ 227 (382)
T cd02931 215 CG-EDFPVSLRYSV 227 (382)
T ss_pred cC-CCceEEEEEec
Confidence 75 45677776654
No 161
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.60 E-value=94 Score=32.50 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=42.6
Q ss_pred CCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhccccccc
Q psy11626 98 PNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 177 (596)
Q Consensus 98 p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
.+..+.+.|+|.+. +.|++ .+..+++.|||||||+--.|...-. +...
T Consensus 61 ~~~p~i~ql~g~~~-----------------~~~~~-aa~~~~~~G~d~IelN~gcP~~~~~--------------~~~~ 108 (319)
T TIGR00737 61 DETPISVQLFGSDP-----------------DTMAE-AAKINEELGADIIDINMGCPVPKIT--------------KKGA 108 (319)
T ss_pred ccceEEEEEeCCCH-----------------HHHHH-HHHHHHhCCCCEEEEECCCCHHHhc--------------CCCc
Confidence 46677899998764 23333 3446678899999999877742110 0111
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 178 GPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 178 g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
|+. -..+.....++++++|++.+
T Consensus 109 Gs~---l~~~~~~~~ei~~~vr~~~~ 131 (319)
T TIGR00737 109 GSA---LLRDPDLIGKIVKAVVDAVD 131 (319)
T ss_pred cch---HhCCHHHHHHHHHHHHhhcC
Confidence 211 01245667788888887764
No 162
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=37.36 E-value=91 Score=32.95 Aligned_cols=34 Identities=9% Similarity=-0.136 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHHHHH--HhCCCccceeeecCc
Q psy11626 283 LDDPKYRKSFIETTVAALK--KYGFNGLDLAWEFPV 316 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~--~~g~dGi~ld~e~p~ 316 (596)
+.+|.+|+-|.+.+.+.+. ..+++|+.+|+.-|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~ 164 (339)
T cd06603 129 FLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPS 164 (339)
T ss_pred CCChhHHHHHHHHHHHHhhcccCCCceEEeccCCcc
Confidence 4578888888777666665 358899999987664
No 163
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=37.36 E-value=1.7e+02 Score=29.24 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhc
Q psy11626 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 364 (596)
Q Consensus 285 ~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~ 364 (596)
|...-..++.++-+.. ...+|-.|-|+-. .+++.=...+++||+.|+
T Consensus 87 d~~~~adYl~~l~~aA-----~P~~L~iEgP~d~----------------------------g~r~~QI~~l~~Lr~~L~ 133 (248)
T PF07476_consen 87 DPDRMADYLAELEEAA-----APFKLRIEGPMDA----------------------------GSREAQIEALAELREELD 133 (248)
T ss_dssp -HHHHHHHHHHHHHHH-----TTS-EEEE-SB------------------------------SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc-----CCCeeeeeCCcCC----------------------------CChHHHHHHHHHHHHHHH
Confidence 3444444555555444 4668889988732 357777889999999999
Q ss_pred cCCcEEEEEEcCCcCcccccChhhHh--hhccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcC
Q psy11626 365 AENFLLSASVLPHVNYTVYFDVPSIT--QHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHG 442 (596)
Q Consensus 365 ~~~~~Ls~av~~~~~~~~~~d~~~i~--~~vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~~~~~~G 442 (596)
+++..+-+.. ..+....-|+..+. +.+|+|.|.+=|+-|= .|+-+++.|-...|
T Consensus 134 ~~g~~v~iVA--DEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi----------------------~ntieAvlyCk~~g 189 (248)
T PF07476_consen 134 RRGINVEIVA--DEWCNTLEDIREFADAKAADMVQIKTPDLGGI----------------------NNTIEAVLYCKEHG 189 (248)
T ss_dssp HCT--EEEEE---TT--SHHHHHHHHHTT-SSEEEE-GGGGSST----------------------HHHHHHHHHHHHTT
T ss_pred hcCCCCeEEe--ehhcCCHHHHHHHHhcCCcCEEEecCCCccch----------------------hhHHHHHHHHHhcC
Confidence 9886665543 33444455677764 4599999999887542 25677777777775
Q ss_pred C
Q psy11626 443 V 443 (596)
Q Consensus 443 v 443 (596)
+
T Consensus 190 v 190 (248)
T PF07476_consen 190 V 190 (248)
T ss_dssp -
T ss_pred C
Confidence 4
No 164
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=37.25 E-value=2.8e+02 Score=32.89 Aligned_cols=116 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCeeee----------eccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHH
Q psy11626 129 KSFIETTVAALKKYGFNGLDL----------AWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREM 198 (596)
Q Consensus 129 ~~f~~si~~~l~~~gfDGvdi----------DwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~L 198 (596)
+.|++.++..|++.|++.|.| .|-|-...--.....+| ..+.|..||+++
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~G--------------------tp~dlk~LVd~a 309 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSG--------------------TPEDLKYLIDKA 309 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccC--------------------CHHHHHHHHHHH
Q ss_pred HHHhhhcCcEEEEEecCCcccccccchhhhhcccceeeeeccccccCCcccccccccccccccccCC-----------CC
Q psy11626 199 KAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFR-----------TP 267 (596)
Q Consensus 199 r~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i~~m~Yd~~~~~~~~~~~~~d~~~~~~yd~~-----------g~ 267 (596)
.++ .|.=.+|+|.-++.+-. +.
T Consensus 310 H~~-----------------------------------------------GI~VilDvV~nH~~~~~~~gl~~fDg~~~~ 342 (758)
T PLN02447 310 HSL-----------------------------------------------GLRVLMDVVHSHASKNTLDGLNGFDGTDGS 342 (758)
T ss_pred HHC-----------------------------------------------CCEEEEEeccccccccccccccccCCCCcc
Q ss_pred CCCCCCCCCCCC----cccCCChHHHHHHHHHHHHHHHHhCCCcccee
Q psy11626 268 QRNPKEADYSAP----LHFLDDPKYRKSFIETTVAALKKYGFNGLDLA 311 (596)
Q Consensus 268 ~~~~~~~~~~ap----~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld 311 (596)
+......+.+.. .....++..|+.+++++.-+++++++||+-+|
T Consensus 343 Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 343 YFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFD 390 (758)
T ss_pred ccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCccccccc
No 165
>PRK14705 glycogen branching enzyme; Provisional
Probab=37.19 E-value=3.1e+02 Score=34.35 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeee
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWE 313 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e 313 (596)
..++..|+.+++++.-++++|++||+-+|--
T Consensus 876 ~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 876 FGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 4678899999999999999999999999973
No 166
>PRK10426 alpha-glucosidase; Provisional
Probab=37.00 E-value=1.1e+02 Score=35.41 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=28.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceeeec
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEF 314 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~ 314 (596)
-+.||..|+=|-+.+.+.+.+.|++|...|+.=
T Consensus 331 Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E 363 (635)
T PRK10426 331 DLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGE 363 (635)
T ss_pred cCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCC
Confidence 356889998888888889999999999999864
No 167
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=36.86 E-value=2.1e+02 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 287 KYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 287 ~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
..|+.+++++..+++++++||.-+|-
T Consensus 220 ~vr~~i~~~~~~W~~e~~iDGfR~D~ 245 (542)
T TIGR02402 220 EVRRYILDNALYWLREYHFDGLRLDA 245 (542)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 78889999999999999999999995
No 168
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=36.68 E-value=71 Score=38.43 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeeeeccC
Q psy11626 123 DDPKYRKSFIETTVAALKKYGFNGLDLAWEF 153 (596)
Q Consensus 123 ~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~ 153 (596)
.++.-|+-+++++.-|+++|++||+-||-..
T Consensus 469 e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~ 499 (898)
T TIGR02103 469 EHRMMAKLIVDSLVVWAKDYKVDGFRFDLMG 499 (898)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEechh
Confidence 4578889999999999999999999999763
No 169
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=36.31 E-value=1.2e+02 Score=31.01 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEE
Q psy11626 293 IETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA 372 (596)
Q Consensus 293 i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~ 372 (596)
...+++.+.+.|+|+++|++.-|..... . .-..+......+++++|+++ ++.+++
T Consensus 113 ~~~~a~~~~~~G~d~ielN~~cP~~~~~---------------------~-~~~~~~~~~~eiv~~vr~~~---~~pv~v 167 (289)
T cd02810 113 YVELARKIERAGAKALELNLSCPNVGGG---------------------R-QLGQDPEAVANLLKAVKAAV---DIPLLV 167 (289)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCCC---------------------c-ccccCHHHHHHHHHHHHHcc---CCCEEE
Confidence 3345666677899999999998763210 0 01123455667778888766 466777
Q ss_pred EEcCCcCcccccChhh-Hhh-hccEeEEec
Q psy11626 373 SVLPHVNYTVYFDVPS-ITQ-HLDMITLHA 400 (596)
Q Consensus 373 av~~~~~~~~~~d~~~-i~~-~vD~i~vM~ 400 (596)
-+.+........++.. +.+ -+|+|.+..
T Consensus 168 Kl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 168 KLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 7665432111122222 222 279998864
No 170
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.97 E-value=1.4e+02 Score=31.13 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecC
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 315 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p 315 (596)
+.||.+|+-|.+.+ +.+.+.|+||..+|+.-|
T Consensus 134 ftnp~a~~w~~~~~-~~~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 134 WFDPAAQAWFHDNY-KKLIDQGVTGWWGDLGEP 165 (317)
T ss_pred CCCHHHHHHHHHHH-HHhhhCCccEEEecCCCc
Confidence 35788887776655 455889999999999755
No 171
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=35.84 E-value=4.1e+02 Score=26.44 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=48.8
Q ss_pred HHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccc
Q psy11626 89 QITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSI 168 (596)
Q Consensus 89 ~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~ 168 (596)
++..++.. +..+.+.|.|.+. +.+ ..++..+.++ .|+|||+-..|...-.. .+.|+.
T Consensus 64 ~~~~~~~~--~~p~~vqi~g~~~-----------------~~~-~~aa~~~~~~-~~~ielN~gCP~~~v~~--~g~G~~ 120 (233)
T cd02911 64 EIKALKDS--NVLVGVNVRSSSL-----------------EPL-LNAAALVAKN-AAILEINAHCRQPEMVE--AGAGEA 120 (233)
T ss_pred HHHHhhcc--CCeEEEEecCCCH-----------------HHH-HHHHHHHhhc-CCEEEEECCCCcHHHhc--CCcchH
Confidence 34445443 6788899987653 122 2344556665 59999999998763110 011111
Q ss_pred hhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEec
Q psy11626 169 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVL 214 (596)
Q Consensus 169 ~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~ 214 (596)
. ..|.+....+++++|+. +.-|++-+.
T Consensus 121 L---------------l~~p~~l~eiv~avr~~----~~pVsvKir 147 (233)
T cd02911 121 L---------------LKDPERLSEFIKALKET----GVPVSVKIR 147 (233)
T ss_pred H---------------cCCHHHHHHHHHHHHhc----CCCEEEEEc
Confidence 1 12467788888888863 455666554
No 172
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=34.92 E-value=4.5e+02 Score=30.41 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=28.8
Q ss_pred cccCCChHHHHHHHHHHHHHHHHhCCCccceeee
Q psy11626 280 LHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWE 313 (596)
Q Consensus 280 ~~~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e 313 (596)
+++..-+..|.-++.++.-++.+|.+||+-+|=-
T Consensus 272 i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV 305 (628)
T COG0296 272 IFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAV 305 (628)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHhCCcceeeehh
Confidence 3445567889999999999999999999999854
No 173
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=34.57 E-value=5.1e+02 Score=26.38 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHhccCCcEEEEEEcCCcCcccccChhhHhhh-ccEeEEecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy11626 358 EMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQH-LDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVR 436 (596)
Q Consensus 358 elr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~-vD~i~vM~YD~~~~~~~~~~~g~~aPL~~~~~~~~~~sv~~~v~ 436 (596)
++++++.+.|+.+..-++|..... .+..|++. -.||-++++- +.||....+.. .+...++
T Consensus 131 ~~~~~~~~~gl~~I~lv~p~t~~~---Ri~~i~~~a~gFiY~vs~~--------GvTG~~~~~~~--------~l~~~i~ 191 (259)
T PF00290_consen 131 ELREAAKKHGLDLIPLVAPTTPEE---RIKKIAKQASGFIYLVSRM--------GVTGSRTELPD--------ELKEFIK 191 (259)
T ss_dssp HHHHHHHHTT-EEEEEEETTS-HH---HHHHHHHH-SSEEEEESSS--------SSSSTTSSCHH--------HHHHHHH
T ss_pred HHHHHHHHcCCeEEEEECCCCCHH---HHHHHHHhCCcEEEeeccC--------CCCCCcccchH--------HHHHHHH
Confidence 566677777877766666654332 24566544 5677776653 35555554432 3566666
Q ss_pred HHHHcCCCCCcEEEee
Q psy11626 437 WFIEHGVELQKLVLGI 452 (596)
Q Consensus 437 ~~~~~Gvp~~KLvlGv 452 (596)
...+.. .-.|++|.
T Consensus 192 ~ik~~~--~~Pv~vGF 205 (259)
T PF00290_consen 192 RIKKHT--DLPVAVGF 205 (259)
T ss_dssp HHHHTT--SS-EEEES
T ss_pred HHHhhc--CcceEEec
Confidence 654443 55566664
No 174
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=34.40 E-value=5.3e+02 Score=30.74 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCcc
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVV 317 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~ 317 (596)
..||..|+=|-+...+.+.+.|++|...|+.=|..
T Consensus 384 Ftnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 384 FTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEP 418 (772)
T ss_pred CCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCcc
Confidence 45788898888888899999999999999987753
No 175
>PRK12568 glycogen branching enzyme; Provisional
Probab=34.36 E-value=1.3e+02 Score=35.37 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
..+++-|+-+++++.-||++|++||+-+|
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~D 408 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVD 408 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEc
Confidence 45778999999999999999999999999
No 176
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.96 E-value=1.1e+02 Score=29.96 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCccceeeecCc
Q psy11626 294 ETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 294 ~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
....+.+++.||||++|+...|.
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~ 92 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPS 92 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCH
Confidence 34555666789999999999875
No 177
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=32.76 E-value=1.2e+02 Score=32.49 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHH-HHHHHHHHHHhhhc
Q psy11626 127 YRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHF-TLLIREMKAAFRAE 205 (596)
Q Consensus 127 ~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~-~~ll~~Lr~~l~~~ 205 (596)
-++.|++.... .++-|||||+|.=-+--.-.+. +....|+=.+...|+- |.+..| .++++++|++.++.
T Consensus 147 ii~~f~~AA~r-A~~AGFDgVEIH~AhGYLi~qF----lsp~tN~RtD~YGGSl-----ENR~Rf~~EVv~aVr~~vg~~ 216 (363)
T COG1902 147 VIEDFARAARR-AKEAGFDGVEIHGAHGYLLSQF----LSPLTNKRTDEYGGSL-----ENRARFLLEVVDAVREAVGAD 216 (363)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEeeccchHHHHh----cCCccCCCCCccCCcH-----HHHHHHHHHHHHHHHHHhCCC
Confidence 34677766554 4458999999984321000000 0000111112222321 344444 56777777777744
Q ss_pred CcEEEEEecCCcc-cccccchhh
Q psy11626 206 NFLLSASVLPHVN-YTVYFDVPS 227 (596)
Q Consensus 206 ~~~ls~av~~~~~-~~~~~~~~~ 227 (596)
+.|.+-+++... ...++++..
T Consensus 217 -~~vg~Rls~~d~~~~~g~~~~e 238 (363)
T COG1902 217 -FPVGVRLSPDDFFDGGGLTIEE 238 (363)
T ss_pred -ceEEEEECccccCCCCCCCHHH
Confidence 567777776554 223444333
No 178
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=32.74 E-value=5.2e+02 Score=27.38 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCC
Q psy11626 290 KSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAEN 367 (596)
Q Consensus 290 ~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~ 367 (596)
..++..+++.+++.|+. .||= +.|+-++.|-+|-.- ...+..+|..|+++-.+++++..
T Consensus 109 ~~yT~~vl~~l~~~G~~---pd~V-----QVGNEin~Gmlwp~g-----------~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 109 YDYTKDVLQALKAAGVT---PDMV-----QVGNEINNGMLWPDG-----------KPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp HHHHHHHHHHHHHTT-----ESEE-----EESSSGGGESTBTTT-----------CTT-HHHHHHHHHHHHHHHHTHS
T ss_pred HHHHHHHHHHHHHCCCC---ccEE-----EeCccccccccCcCC-----------CccCHHHHHHHHHHHHHHHHhcC
Confidence 45677788888887664 3433 234445555555311 14577899999988888888754
No 179
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=30.82 E-value=1.1e+02 Score=32.66 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHH-HHHHHHHHHHhhh
Q psy11626 126 KYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHF-TLLIREMKAAFRA 204 (596)
Q Consensus 126 ~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~-~~ll~~Lr~~l~~ 204 (596)
+-.+.|++.. ..+++-|||||+|.=-+-..-.+ =+...+|.=.+.+.|+- +.+..| .++++++|++.+.
T Consensus 156 ~ii~~f~~AA-~rA~~AGfDGVEIh~ahGyLl~q----FLSp~~N~RtDeYGGsl-----ENR~Rf~~Eiv~aVr~~vg~ 225 (362)
T PRK10605 156 GIVNDFRQAI-ANAREAGFDLVELHSAHGYLLHQ----FLSPSSNQRTDQYGGSV-----ENRARLVLEVVDAGIAEWGA 225 (362)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccccchHHH----hcCCcCCCCCCcCCCcH-----HHHHHHHHHHHHHHHHHcCC
Confidence 3446777765 56666899999998432110000 00011122112222322 344444 5677888888865
Q ss_pred cCcEEEEEecCC
Q psy11626 205 ENFLLSASVLPH 216 (596)
Q Consensus 205 ~~~~ls~av~~~ 216 (596)
. + |.+-+++.
T Consensus 226 ~-~-igvRis~~ 235 (362)
T PRK10605 226 D-R-IGIRISPL 235 (362)
T ss_pred C-e-EEEEECCc
Confidence 4 3 66666664
No 180
>PRK12313 glycogen branching enzyme; Provisional
Probab=30.61 E-value=1.1e+02 Score=35.28 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 123 DDPKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 123 ~~~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
.+++.|+-+++++.-|+++||+||+-||
T Consensus 282 ~~~~vr~~l~~~~~~W~~~~~iDG~R~D 309 (633)
T PRK12313 282 GKNEVRSFLISSALFWLDEYHLDGLRVD 309 (633)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEc
Confidence 4788999999999999999999999999
No 181
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=30.42 E-value=3.3e+02 Score=27.03 Aligned_cols=41 Identities=10% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHhccCCcEEEEEEcCCcCcccccChhhHh--hhccEeEEeccc
Q psy11626 359 MKAAFRAENFLLSASVLPHVNYTVYFDVPSIT--QHLDMITLHAYD 402 (596)
Q Consensus 359 lr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~--~~vD~i~vM~YD 402 (596)
.-+..++.|..+.+++.+..... ++..+. ..+|+|.+|+.+
T Consensus 106 ~l~~ik~~G~~~gval~p~t~~e---~l~~~l~~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 106 VARKIREAGMKVGVAIKPKTPVE---VLFPLIDTDLVDMVLVMTVE 148 (228)
T ss_pred HHHHHHHCCCeEEEEECCCCCHH---HHHHHHccchhhhHHhhhcc
Confidence 33444445778888887654322 234455 678999999876
No 182
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=2.4e+02 Score=29.36 Aligned_cols=96 Identities=13% Similarity=0.209 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCccceeee-cCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEE
Q psy11626 294 ETTVAALKKYGFNGLDLAWE-FPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA 372 (596)
Q Consensus 294 ~~~i~~~~~~g~dGi~ld~e-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~ 372 (596)
-++.+.+.+.|||-|.+|.- ||...++ + .++-.+.+...-+..+.+.+||--.|+.|. .-+|+
T Consensus 199 vtIAKEa~~fGfdEiQFDYIRFP~dg~~--------l-----~~A~~~~n~~~m~~~~Al~sfL~yArE~l~---vpIS~ 262 (400)
T COG1306 199 VTIAKEAAKFGFDEIQFDYIRFPADGGG--------L-----DKALNYRNTDNMTKSEALQSFLHYAREELE---VPISA 262 (400)
T ss_pred HHHHHHHHHcCccceeeeEEEccCCCCc--------h-----hhhhcccccccCChHHHHHHHHHHHHHhcc---cceEE
Confidence 35778888999999999976 8864321 0 001111122222334667778877777776 55777
Q ss_pred EEcCCcC-----cccccChhhHhhhccEeEEecccCCC
Q psy11626 373 SVLPHVN-----YTVYFDVPSITQHLDMITLHAYDFRT 405 (596)
Q Consensus 373 av~~~~~-----~~~~~d~~~i~~~vD~i~vM~YD~~~ 405 (596)
.+....+ ...+=+++.++.+||.|.-|-|--|-
T Consensus 263 DIYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 263 DIYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred EeecccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 7664322 12345789999999999999987553
No 183
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=29.89 E-value=1.6e+02 Score=31.02 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhc
Q psy11626 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 364 (596)
Q Consensus 285 ~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~ 364 (596)
++.-|+-+++. +..+.+.||||+.||.---. .... .+| ...+...+....|+++|.+.++
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy--------------~~~~--~~~---~~~~~~~~~m~~~i~~Ia~~ar 201 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAF--------------EYWA--ENG---DNRPGAAAEMIAFVCEIAAYAR 201 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhh--------------hhhc--ccC---CcchhhHHHHHHHHHHHHHHHH
Confidence 45667767766 67778999999999963110 0000 001 1123456788999999988887
Q ss_pred cCCcEEEEEEcCCcCcccccChhhHhhhccEeEEec
Q psy11626 365 AENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHA 400 (596)
Q Consensus 365 ~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~ 400 (596)
++...+-+.+........ .+-..+...+|.|+.-+
T Consensus 202 ~~~P~~~II~NnG~eil~-~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 202 AQNPQFVIIPQNGEELLR-DDHGGLAATVSGWAVEE 236 (315)
T ss_pred HHCCCEEEEecCchhhhh-ccccchhhhceEEEecc
Confidence 765443332221111111 11123556677776554
No 184
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.77 E-value=9e+02 Score=27.75 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.3
Q ss_pred cCCChHHHHHHHH---HHHHHHHH--hCCCccceeee
Q psy11626 282 FLDDPKYRKSFIE---TTVAALKK--YGFNGLDLAWE 313 (596)
Q Consensus 282 ~~~~~~~r~~~i~---~~i~~~~~--~g~dGi~ld~e 313 (596)
...+|..|+.+++ ++++++.+ +|+||.-||--
T Consensus 301 N~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva 337 (598)
T PRK10785 301 DFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVV 337 (598)
T ss_pred cCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecH
Confidence 4568899999986 57777765 69999999954
No 185
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=29.56 E-value=2.6e+02 Score=30.00 Aligned_cols=101 Identities=9% Similarity=0.025 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHH-HHHHHHHHHhccCC
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFT-LLIREMKAAFRAEN 367 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~-~flkelr~~l~~~~ 367 (596)
.+.|++.. +.+++-|||||+|....-. -+..+..-..++-+.. ..++.+.+..|. ..++++|+++.. +
T Consensus 149 i~~f~~AA-~ra~~aGfDgVEih~ahGy--------Ll~QFlSp~~N~RtD~-yGGslenR~Rf~~eii~aIr~~vg~-~ 217 (370)
T cd02929 149 RRWYVDAA-LRARDAGFDIVYVYAAHGY--------LPLQFLLPRYNKRTDE-YGGSLENRARFWRETLEDTKDAVGD-D 217 (370)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEcccccc--------hHHHhhCccccCCccc-cCCChHhhhHHHHHHHHHHHHHcCC-C
Confidence 46677654 4566789999999987510 0000000000111111 112344444443 467777777653 4
Q ss_pred cEEEEEEcCCcCcc--cccC------h-hhHhhhccEeEEec
Q psy11626 368 FLLSASVLPHVNYT--VYFD------V-PSITQHLDMITLHA 400 (596)
Q Consensus 368 ~~Ls~av~~~~~~~--~~~d------~-~~i~~~vD~i~vM~ 400 (596)
+.|.+.+++..... ...+ + +.|.+.+|+++|-.
T Consensus 218 ~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 218 CAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred ceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 66666666532111 1111 1 23445578888753
No 186
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=29.49 E-value=1.8e+02 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
+.++..|+-|-+.+.+++..+|+||..+|+.-|.
T Consensus 149 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 149 FTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred CCChhHHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 4577888878788888777779999999997555
No 187
>PRK05402 glycogen branching enzyme; Provisional
Probab=28.92 E-value=1.5e+02 Score=34.95 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
..+++.|+-+++++.-||+++|+||+-||
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D 404 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVD 404 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEC
Confidence 45788999999999999999999999999
No 188
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=28.71 E-value=2.2e+02 Score=29.76 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCC
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 155 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~ 155 (596)
..+++.|+-|.+.+..++.+.|+||+=+|+-.|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 4788999999999999998999999999986553
No 189
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=28.68 E-value=33 Score=30.22 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCCCCcEEEee-ecceee
Q psy11626 433 AMVRWFIEHGVELQKLVLGI-PTFGRS 458 (596)
Q Consensus 433 ~~v~~~~~~Gvp~~KLvlGv-p~YG~~ 458 (596)
...+.++++|||++.||||+ |-+-|.
T Consensus 78 gIa~eLve~GVpk~dIVLgF~~P~~R~ 104 (111)
T PF08869_consen 78 GIAEELVEAGVPKEDIVLGFHPPEVRQ 104 (111)
T ss_dssp HHHHHHHHTT--GGGEEETTS-GGGGC
T ss_pred HHHHHHHHcCCCHHHEEEccCCccccc
Confidence 34457889999999999995 444443
No 190
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=28.50 E-value=4.6e+02 Score=23.99 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=34.1
Q ss_pred HHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEecC
Q psy11626 136 VAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLP 215 (596)
Q Consensus 136 ~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~ 215 (596)
..++++.|+|+|.|.-+.+.. ......+++++|+.+ .+..+.+.+.+
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~-------------------------------~~~~~~~~~~i~~~~--~~~~v~~~~~~ 123 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL-------------------------------AREDLELIRELREAV--PDVKVVVKLSP 123 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH-------------------------------HHHHHHHHHHHHHhc--CCceEEEEECC
Confidence 578889999999998876421 133456777888777 35677777765
Q ss_pred Cc
Q psy11626 216 HV 217 (596)
Q Consensus 216 ~~ 217 (596)
..
T Consensus 124 ~~ 125 (200)
T cd04722 124 TG 125 (200)
T ss_pred CC
Confidence 43
No 191
>PRK14706 glycogen branching enzyme; Provisional
Probab=28.47 E-value=6.3e+02 Score=29.37 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
..++..|+.+++++.-+++++++||+-+|-
T Consensus 278 ~~~~eVr~~l~~~~~~W~~e~~iDG~R~Da 307 (639)
T PRK14706 278 YGRNEVVMFLIGSALKWLQDFHVDGLRVDA 307 (639)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 467899999999999999999999999994
No 192
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=28.36 E-value=7.4e+02 Score=26.31 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHhccC--CcEEEEEEcCCcCcccccChhhHhhhccEeEEecccC
Q psy11626 349 REHFTLLIREMKAAFRAE--NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 403 (596)
Q Consensus 349 ~~~f~~flkelr~~l~~~--~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD~ 403 (596)
...+..+++.+++.+++. +..++..+... .....|+.++++.+|++..-.|-.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~--~~~~~d~~~~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDPDHPVTTNFMGS--WFNGIDYFKWAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT-----SS-HHHHGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeCcccc--ccCcCCHHHHHhhCCcceeccccC
Confidence 355666666677666654 44555444332 234578888999999987766643
No 193
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=28.29 E-value=7.2e+02 Score=26.10 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=47.7
Q ss_pred hhHHHHHHHhhhC--CCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeeeeccCCCcCcccc
Q psy11626 85 ELFKQITALKTFQ--PNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG-FNGLDLAWEFPVVTEKHE 161 (596)
Q Consensus 85 ~~~~~~~~lk~~~--p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~g-fDGvdiDwE~p~~~~~~~ 161 (596)
...+++...+.+. .++.+..++++-.. +.| +..+..+++.+ .|.+.|+.-.|...+..
T Consensus 80 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~----~~~--------------~d~~~~~~~~~~ad~ielNiScPnt~g~~- 140 (310)
T COG0167 80 AFLEELKLAKYEGKPIGVNIGKNKGGPSE----EAW--------------ADYARLLEEAGDADAIELNISCPNTPGGR- 140 (310)
T ss_pred HHHHHHHhhhhccCCcCcceEEecCCCcH----HHH--------------HHHHHHHHhcCCCCEEEEEccCCCCCChh-
Confidence 3444444444443 45667777776443 122 23455666667 99999999999866410
Q ss_pred ccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 162 SYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
++ ..+.+.+..+++++|+..+
T Consensus 141 -----~l----------------~~~~e~l~~l~~~vk~~~~ 161 (310)
T COG0167 141 -----AL----------------GQDPELLEKLLEAVKAATK 161 (310)
T ss_pred -----hh----------------ccCHHHHHHHHHHHHhccc
Confidence 00 0256778888888888765
No 194
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=28.25 E-value=1.6e+02 Score=29.54 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=36.2
Q ss_pred hhhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 84 ~~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
+..+++.++|.+++ +++| +.|||-. ..++ .+.-++.-++.++++|||.|+|.
T Consensus 40 ~~~l~eki~la~~~-~V~v--~~GGtl~-------E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS 91 (237)
T TIGR03849 40 RDIVKEKIEMYKDY-GIKV--YPGGTLF-------EIAH-----SKGKFDEYLNECDELGFEAVEIS 91 (237)
T ss_pred HHHHHHHHHHHHHc-CCeE--eCCccHH-------HHHH-----HhhhHHHHHHHHHHcCCCEEEEc
Confidence 45677888877764 7755 6677532 2222 33566777889999999999975
No 195
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=28.05 E-value=6.8e+02 Score=25.79 Aligned_cols=131 Identities=16% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhccccee--eeeccccccCCcccccccccccccc
Q psy11626 183 NPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMI--TLHAYDFLYFDVPSITQHLDMITLH 260 (596)
Q Consensus 183 ~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~~~d~i--~~m~Yd~~~~~~~~~~~~~d~~~~~ 260 (596)
+......++..-|...|.+++..||-.- |.....+....+-+.+.++.|+| |.++|
T Consensus 146 r~~~tasql~~~I~~vrsav~~agy~gp--V~T~dsw~~~~~np~l~~~SDfia~N~~aY-------------------- 203 (305)
T COG5309 146 RNDLTASQLIEYIDDVRSAVKEAGYDGP--VTTVDSWNVVINNPELCQASDFIAANAHAY-------------------- 203 (305)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCCc--eeecccceeeeCChHHhhhhhhhhcccchh--------------------
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCChHHHHH--HHHHHHHHHHHhCCCccceeee---cCcccCCccccccccceecccc
Q psy11626 261 AYDFRTPQRNPKEADYSAPLHFLDDPKYRKS--FIETTVAALKKYGFNGLDLAWE---FPVVTEKHESYTLGSIWHKIKK 335 (596)
Q Consensus 261 ~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~--~i~~~i~~~~~~g~dGi~ld~e---~p~~~~~~~~~~~~~~~~~~~~ 335 (596)
+=.++.+... |+..-++.++.-.=.-+.+-.. +|..
T Consensus 204 ---------------------wd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~------------------ 244 (305)
T COG5309 204 ---------------------WDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTETGWPSD------------------ 244 (305)
T ss_pred ---------------------ccccchhhhhhHHHHHHHHHHHHhcCCCccEEEeeccCCCC------------------
Q ss_pred cccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEEcCCcCcccccChhhHhhhccEeEEeccc
Q psy11626 336 TVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 402 (596)
Q Consensus 336 ~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av~~~~~~~~~~d~~~i~~~vD~i~vM~YD 402 (596)
|+-........++=..+++++-.+|+..|+ |.+.+-+||
T Consensus 245 ---G~~~G~a~pS~anq~~~~~~i~~~~~~~G~-------------------------d~fvfeAFd 283 (305)
T COG5309 245 ---GRTYGSAVPSVANQKIAVQEILNALRSCGY-------------------------DVFVFEAFD 283 (305)
T ss_pred ---CCccCCcCCChhHHHHHHHHHHhhhhccCc-------------------------cEEEeeecc
No 196
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=27.99 E-value=2.7e+02 Score=30.03 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhCCCccceee---ecCcccCCccccccccceecccccccCCCCCCCccChHHHH-HHHHHHHHHh
Q psy11626 288 YRKSFIETTVAALKKYGFNGLDLAW---EFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFT-LLIREMKAAF 363 (596)
Q Consensus 288 ~r~~~i~~~i~~~~~~g~dGi~ld~---e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~-~flkelr~~l 363 (596)
..+.|++.. +.+++-|||||+|.. +|...+ +.....++-+... .++.+++..|+ ..++++|+++
T Consensus 148 ii~~f~~AA-~ra~~AGfDgVEih~ah~GyLl~q----------FLSp~~N~RtDey-GGslenR~rf~~eii~~vr~~~ 215 (382)
T cd02931 148 FVGKFGESA-VIAKEAGFDGVEIHAVHEGYLLDQ----------FTISLFNKRTDKY-GGSLENRLRFAIEIVEEIKARC 215 (382)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEeccccChHHHH----------hcCCccCCCCCcC-CCCHHHHhHHHHHHHHHHHHhc
Confidence 346666655 455567999999998 554211 1000011111111 12344554444 3666777766
Q ss_pred ccCCcEEEEEEcC
Q psy11626 364 RAENFLLSASVLP 376 (596)
Q Consensus 364 ~~~~~~Ls~av~~ 376 (596)
.. ++.|++.+.+
T Consensus 216 g~-~f~v~vri~~ 227 (382)
T cd02931 216 GE-DFPVSLRYSV 227 (382)
T ss_pred CC-CceEEEEEec
Confidence 42 4666666554
No 197
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=27.92 E-value=5.8e+02 Score=26.07 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEE
Q psy11626 295 TTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASV 374 (596)
Q Consensus 295 ~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av 374 (596)
.+.+.+++.|+|+++|++.-|.....| .. --.+......+++++|++. +.-+++-+
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~g------------------~~---~~~~~~~~~eiv~~vr~~~---~~Pv~vKl 161 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGGG------------------MA---FGTDPEAVAEIVKAVKKAT---DVPVIVKL 161 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCc------------------cc---ccCCHHHHHHHHHHHHhcc---CCCEEEEe
Confidence 455566778999999999988643211 00 0123345556677777665 45666666
Q ss_pred cCC
Q psy11626 375 LPH 377 (596)
Q Consensus 375 ~~~ 377 (596)
.+.
T Consensus 162 ~~~ 164 (296)
T cd04740 162 TPN 164 (296)
T ss_pred CCC
Confidence 553
No 198
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=27.72 E-value=3e+02 Score=25.53 Aligned_cols=42 Identities=10% Similarity=0.310 Sum_probs=19.8
Q ss_pred HhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhC----CCeeeeecc
Q psy11626 93 LKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG----FNGLDLAWE 152 (596)
Q Consensus 93 lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~g----fDGvdiDwE 152 (596)
+++++|++ |+|||++. .-+++.+.|.+++.+.. ++.|++-|-
T Consensus 59 i~~~kP~v---I~v~g~~~---------------~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v 104 (150)
T PF14639_consen 59 IEKHKPDV---IAVGGNSR---------------ESRKLYDDVRDIVEELDEDEQMPPIPVVIV 104 (150)
T ss_dssp HHHH--SE---EEE--SST---------------HHHHHHHHHHHHHHHTTB-TTS-B--EEE-
T ss_pred HHHcCCeE---EEEcCCCh---------------hHHHHHHHHHHHHHHhhhcccCCCceEEEE
Confidence 34555775 55688754 22356677777777664 455555443
No 199
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.34 E-value=4.2e+02 Score=28.37 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeec
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEF 314 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~ 314 (596)
.+.|++.. +.+++.|||||+|.-.+
T Consensus 143 i~~f~~AA-~~a~~aGfDgVeih~ah 167 (361)
T cd04747 143 IAAFARAA-ADARRLGFDGIELHGAH 167 (361)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEeccc
Confidence 45666544 55566799999999875
No 200
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=27.20 E-value=1.5e+02 Score=32.92 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeeee-----ccCCCcCccccccccccchhcccccccCCCCCCCccch-HHHHHHHH
Q psy11626 123 DDPKYRKSFIETTVAALKKYGFNGLDLA-----WEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHR-EHFTLLIR 196 (596)
Q Consensus 123 ~~~~~r~~f~~si~~~l~~~gfDGvdiD-----wE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~-~~~~~ll~ 196 (596)
.++ .-..++..|+.+..+.|.||+-|| |+.++..+ .+. ...-++++
T Consensus 163 ~np-~v~e~i~~il~fwl~~GvdgfRLDAv~~l~K~~Gt~c---------------------------~~l~pet~~~l~ 214 (470)
T TIGR03852 163 TSE-TTKRFIRDNLENLAEHGASIIRLDAFAYAVKKLGTND---------------------------FFVEPEIWELLD 214 (470)
T ss_pred CCH-HHHHHHHHHHHHHHHcCCCEEEEecchhhcccCCCCc---------------------------ccCChhHHHHHH
Confidence 444 345666667777778899999999 77665442 122 45778999
Q ss_pred HHHHHhhhcCcEEE
Q psy11626 197 EMKAAFRAENFLLS 210 (596)
Q Consensus 197 ~Lr~~l~~~~~~ls 210 (596)
++|+.+.+.+.+|-
T Consensus 215 ~~r~~~~~~~~~ll 228 (470)
T TIGR03852 215 EVRDILAPTGAEIL 228 (470)
T ss_pred HHHHHhccCCCEEE
Confidence 99998877665443
No 201
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=27.14 E-value=1.3e+02 Score=34.57 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeeeecc
Q psy11626 123 DDPKYRKSFIETTVAALKKYGFNGLDLAWE 152 (596)
Q Consensus 123 ~~~~~r~~f~~si~~~l~~~gfDGvdiDwE 152 (596)
.++..|+-+++++.-|+++||+||+-||--
T Consensus 292 ~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~ 321 (605)
T TIGR02104 292 EREMMRKFIVDSVLYWVKEYNIDGFRFDLM 321 (605)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEech
Confidence 467889999999999999999999999953
No 202
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=26.63 E-value=3.9e+02 Score=28.06 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeec
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEF 314 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~ 314 (596)
.+.|++.+. .+++.|||||+|....
T Consensus 153 i~~~~~aA~-~a~~aGfDgVei~~~~ 177 (336)
T cd02932 153 VDAFVAAAR-RAVEAGFDVIEIHAAH 177 (336)
T ss_pred HHHHHHHHH-HHHHcCCCEEEEcccc
Confidence 455666554 4456799999999753
No 203
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=25.64 E-value=3.6e+02 Score=32.02 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceeee
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWE 313 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e 313 (596)
.+.|++... .+++-|||||+|...
T Consensus 550 i~~f~~aA~-~a~~aGfDgveih~a 573 (765)
T PRK08255 550 RDDFVAAAR-RAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHH-HHHHcCCCEEEEecc
Confidence 455666554 456679999999987
No 204
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.46 E-value=3.4e+02 Score=28.70 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeec
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEF 314 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~ 314 (596)
.+.|++.. +.+++-|||||+|...+
T Consensus 151 i~~f~~aA-~~a~~aGfDgVeih~ah 175 (338)
T cd02933 151 VADFRQAA-RNAIEAGFDGVEIHGAN 175 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 35566544 55666799999999875
No 205
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=25.43 E-value=3.3e+02 Score=26.10 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCe---eeeeccCCCc
Q psy11626 135 TVAALKKYGFNG---LDLAWEFPVV 156 (596)
Q Consensus 135 i~~~l~~~gfDG---vdiDwE~p~~ 156 (596)
.++.++++++.. +-||+|....
T Consensus 79 f~~~~~~~~~~~~~~~~lD~E~~~~ 103 (192)
T cd06522 79 FANTAKSLGLSKNTVMVADMEDSSS 103 (192)
T ss_pred HHHHHHHcCCCCCCceEEEeecCCC
Confidence 344467777652 5689997543
No 206
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=25.26 E-value=6.4e+02 Score=24.56 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=33.7
Q ss_pred hhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeecc
Q psy11626 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWE 152 (596)
Q Consensus 85 ~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE 152 (596)
.....+..|++.- ++++++.+--... .+.| ..+++.|.++. ..+.+.|.|-|||++.
T Consensus 41 ~~~~~l~~lr~~~-~~piI~T~R~~~e---GG~~---~~~~~~~~~ll----~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 41 DISEQLAELRRSL-DLPIIFTVRTKEE---GGRF---QGSEEEYLELL----ERAIRLGPDYIDIELD 97 (224)
T ss_dssp HHHHHHHHHHHHC-TSEEEEE--BGGG---TSSB---SS-HHHHHHHH----HHHHHHTSSEEEEEGG
T ss_pred HHHHHHHHHHHhC-CCCEEEEeccccc---CCCC---cCCHHHHHHHH----HHHHHcCCCEEEEEcc
Confidence 4455666677765 8999999973322 1222 23445555444 4444556999999998
No 207
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=25.24 E-value=97 Score=32.35 Aligned_cols=82 Identities=12% Similarity=0.256 Sum_probs=44.0
Q ss_pred hhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhccc
Q psy11626 94 KTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIK 173 (596)
Q Consensus 94 k~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~ 173 (596)
.......++.+=|+|.+. +.|+ ..+.++.++|+|||||+-=.|...... ++.|+.+=
T Consensus 48 ~~~~~~~p~~~Ql~g~~~-----------------~~~~-~aa~~~~~~~~~~IDlN~GCP~~~v~~--~g~Ga~Ll--- 104 (309)
T PF01207_consen 48 PFLPNERPLIVQLFGNDP-----------------EDLA-EAAEIVAELGFDGIDLNMGCPAPKVTK--GGAGAALL--- 104 (309)
T ss_dssp -GCC-T-TEEEEEE-S-H-----------------HHHH-HHHHHHCCTT-SEEEEEE---SHHHHH--CT-GGGGG---
T ss_pred cccccccceeEEEeeccH-----------------HHHH-HHHHhhhccCCcEEeccCCCCHHHHhc--CCcChhhh---
Confidence 333334577777887543 2222 235567779999999999999764332 33443331
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEEEe
Q psy11626 174 KTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASV 213 (596)
Q Consensus 174 ~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av 213 (596)
.+.+....+++++|++++ .-+|+-+
T Consensus 105 ------------~~p~~~~~iv~~~~~~~~---~pvsvKi 129 (309)
T PF01207_consen 105 ------------KDPDLLAEIVKAVRKAVP---IPVSVKI 129 (309)
T ss_dssp ------------C-HHHHHHHHHHHHHH-S---SEEEEEE
T ss_pred ------------cChHHhhHHHHhhhcccc---cceEEec
Confidence 256888999999998876 4455543
No 208
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.19 E-value=3e+02 Score=27.82 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcC
Q psy11626 89 QITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVT 157 (596)
Q Consensus 89 ~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~ 157 (596)
-+..|+++ ++||++.+- +.. |+-|.+.+.+++.+.|+||+=+|+-.|...
T Consensus 71 ~i~~l~~~--g~~~~~~~~--------P~v---------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 71 MIDELHDN--GVKLVLWID--------PYI---------REWWAEVVKKLLVSLGVDGFWTDMGEPSPG 120 (265)
T ss_pred HHHHHHHC--CCEEEEEeC--------hhH---------HHHHHHHHHHhhccCCCCEEeccCCCCCcC
Confidence 34446765 999999753 111 778888888888899999999999877543
No 209
>PLN02960 alpha-amylase
Probab=24.77 E-value=2.2e+02 Score=34.24 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
..+++-|+-+++++.-||++|++||+-||
T Consensus 528 y~~~eVr~fLlsna~yWl~EyhIDGfR~D 556 (897)
T PLN02960 528 YGDHEVLHFLLSNLNWWVTEYRVDGFQFH 556 (897)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCceeec
Confidence 35688999999999999999999999998
No 210
>PRK05474 xylose isomerase; Provisional
Probab=24.76 E-value=9.6e+02 Score=26.40 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=44.0
Q ss_pred CHHHH-HHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHh
Q psy11626 124 DPKYR-KSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202 (596)
Q Consensus 124 ~~~~r-~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l 202 (596)
++-.+ ++=++..-+|+.+.|+.++-|.=.-....+. +..|...++...++.+++++
T Consensus 72 d~~~~a~~k~d~afe~~~kLg~~~~~FHD~D~~peg~-----------------------s~~E~~~~l~~i~~~~k~~~ 128 (437)
T PRK05474 72 DALDLAKAKADAAFEFFTKLGVPYYCFHDVDVAPEGA-----------------------SLKEYNANLDEIVDYLKEKQ 128 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCeeccCccccCCCCC-----------------------CHHHHHHHHHHHHHHHHHHH
Confidence 44333 3448888999999999998665543333221 01133468899999999999
Q ss_pred hhcCcEEEEE
Q psy11626 203 RAENFLLSAS 212 (596)
Q Consensus 203 ~~~~~~ls~a 212 (596)
+..|..|-..
T Consensus 129 ~~tGikllw~ 138 (437)
T PRK05474 129 AETGVKLLWG 138 (437)
T ss_pred HhhCCeeeee
Confidence 9988655443
No 211
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.48 E-value=4.3e+02 Score=28.23 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccc---eecc-cccccCCCCCCCccChHHHHH-HHHHHHHHh
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSI---WHKI-KKTVTGPKDDNPTLHREHFTL-LIREMKAAF 363 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~---~~~~-~~~~~g~~~~~~~~d~~~f~~-flkelr~~l 363 (596)
.+.|++.. +.+++-|||||+|.-.+= |-+..+ .+|- .++-+ ++.+++..|.. .|+++|+++
T Consensus 158 i~~f~~AA-~rA~~AGfDGVEIh~ahG--------yLl~qFLSp~~N~RtDeYG-----GslENR~Rf~~Eiv~aVr~~v 223 (362)
T PRK10605 158 VNDFRQAI-ANAREAGFDLVELHSAHG--------YLLHQFLSPSSNQRTDQYG-----GSVENRARLVLEVVDAGIAEW 223 (362)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccccc--------chHHHhcCCcCCCCCCcCC-----CcHHHHHHHHHHHHHHHHHHc
Confidence 45566644 666779999999986531 001111 1111 11122 24455555553 666677777
Q ss_pred ccCCcEEEEEEcCCc---CcccccCh--------hhHhhh-ccEeEEecc
Q psy11626 364 RAENFLLSASVLPHV---NYTVYFDV--------PSITQH-LDMITLHAY 401 (596)
Q Consensus 364 ~~~~~~Ls~av~~~~---~~~~~~d~--------~~i~~~-vD~i~vM~Y 401 (596)
... . |.+.+.+.. ....+++. +.|.+. +|+|+|..-
T Consensus 224 g~~-~-igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 224 GAD-R-IGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred CCC-e-EEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 644 3 777776532 11222332 233333 799998753
No 212
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=24.37 E-value=8.1e+02 Score=30.80 Aligned_cols=156 Identities=8% Similarity=0.086 Sum_probs=82.4
Q ss_pred EEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCC
Q psy11626 103 MLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDD 182 (596)
Q Consensus 103 llsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 182 (596)
++-||-..+...+..|..++...+. ..+...+.-+.+.|.|=|||.-+.+...
T Consensus 343 ~~~IGEr~N~~G~k~~~~~i~~~d~--~~a~~~A~~qve~GA~iIDVn~~~~~vd------------------------- 395 (1178)
T TIGR02082 343 FVNIGERTNVAGSKKFRRLIIAEDY--DEALDIAKQQVENGAQILDINVDYGMLD------------------------- 395 (1178)
T ss_pred eEEEeeccchhhhHHHHHHHHcCCH--HHHHHHHHHHHHCCCCEEEECCCCCCCC-------------------------
Confidence 4456654443235777776644321 2222333344577999999998855433
Q ss_pred CCccchHHHHHHHHHHHHHhhhcCcEEEEEecCCcccccccchhhhhc------ccceeeeeccccccCCccccccc---
Q psy11626 183 NPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQ------HLDMITLHAYDFLYFDVPSITQH--- 253 (596)
Q Consensus 183 ~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~av~~~~~~~~~~~~~~~~~------~~d~i~~m~Yd~~~~~~~~~~~~--- 253 (596)
..+.+.+++..|++..+-.+.-||+--. +.+++.. -.+.||=-+-.-..-...++.+.
T Consensus 396 ----~~eem~rvv~~i~~~~~~~~vPlsIDS~---------~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~ 462 (1178)
T TIGR02082 396 ----GVAAMKRFLNLLASEPDISTVPLMLDSS---------EWAVLEAGLKCIQGKCIVNSISLKDGEERFIETAKLIKE 462 (1178)
T ss_pred ----HHHHHHHHHHHHHhccCCCCCeEEEeCC---------cHHHHHHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHH
Confidence 3567788888877632111344555432 1122111 22334432221000000011111
Q ss_pred cc-ccccccccCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHHH-hCCCccceeee
Q psy11626 254 LD-MITLHAYDFRTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKK-YGFNGLDLAWE 313 (596)
Q Consensus 254 ~d-~~~~~~yd~~g~~~~~~~~~~~ap~~~~~~~~~r~~~i~~~i~~~~~-~g~dGi~ld~e 313 (596)
.+ -+.+|+.|-.|. -.+...|-.+.++++..+.+ +|++--+|-+.
T Consensus 463 yga~vV~m~~de~G~---------------p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~D 509 (1178)
T TIGR02082 463 YGAAVVVMAFDEEGQ---------------ARTADRKIEICKRAYNILTEKVGFPPEDIIFD 509 (1178)
T ss_pred hCCCEEEEecCCCCC---------------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 11 234556555442 23456778899999999987 99998888877
No 213
>PLN02960 alpha-amylase
Probab=24.37 E-value=8.7e+02 Score=29.39 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=27.5
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 282 ~~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
.+.++..|+-+++++.-+++++++||+-+|=
T Consensus 527 Ny~~~eVr~fLlsna~yWl~EyhIDGfR~DA 557 (897)
T PLN02960 527 KYGDHEVLHFLLSNLNWWVTEYRVDGFQFHS 557 (897)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCceeecc
Confidence 4567899999999999999999999999983
No 214
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.23 E-value=1.3e+02 Score=26.97 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhc
Q psy11626 132 IETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE 205 (596)
Q Consensus 132 ~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~ 205 (596)
++.+.++|++.|++.--|+|+|.+.. +.+.|+..++++-+.+..-
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa~-----------------------------E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISAA-----------------------------EGEKFAETINEFVERIKEL 124 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEehh-----------------------------hHHHHHHHHHHHHHHHHHh
Confidence 45567789999999999999987654 4678888888887777654
No 215
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=24.22 E-value=2.3e+02 Score=34.48 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccceeeecCc
Q psy11626 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 316 (596)
Q Consensus 283 ~~~~~~r~~~i~~~i~~~~~~g~dGi~ld~e~p~ 316 (596)
+.+|..|+=| ...++.+.+.|+||+.+|+.=|.
T Consensus 306 FTnP~ar~WW-~~~~k~l~d~GVDG~W~DmnEPa 338 (978)
T PLN02763 306 FTNKKTRSWW-ANLVKDFVSNGVDGIWNDMNEPA 338 (978)
T ss_pred CCCHHHHHHH-HHHHHHHhcCCCcEEEccCCCCc
Confidence 4578888855 56666777799999999997664
No 216
>PRK13840 sucrose phosphorylase; Provisional
Probab=24.08 E-value=2.2e+02 Score=31.91 Aligned_cols=28 Identities=4% Similarity=0.021 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeee
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLA 150 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiD 150 (596)
..+|+-|+.+.+ ++.+..+.|.||+-||
T Consensus 166 ~~NP~V~~~i~~-il~fwl~~GVDgfRLD 193 (495)
T PRK13840 166 VHSAAGWEYLMS-ILDRFAASHVTLIRLD 193 (495)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCCEEEEe
Confidence 457777777766 5556667799999999
No 217
>PLN03244 alpha-amylase; Provisional
Probab=24.08 E-value=2.4e+02 Score=33.47 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHhhhCCCceEEEEEc----C---------CCCCCChhhhh--------------hhcCCHHHHHHHHHHH
Q psy11626 83 GKELFKQITALKTFQPNLNIMLSVG----G---------FEDDDDKEKYL--------------EVLDDPKYRKSFIETT 135 (596)
Q Consensus 83 ~~~~~~~~~~lk~~~p~lkvllsiG----G---------~~~~~~s~~f~--------------~~~~~~~~r~~f~~si 135 (596)
...-++.|+...+++ |++|+|=+= + +..+. ...|. -....++-|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~-GI~VILDvV~NH~~~d~~~GL~~fDGt~-~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL-GLLVFLDIVHSYAAADEMVGLSLFDGSN-DCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEecCccCCCccccchhhcCCCc-cceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 356788888866654 999997431 0 11000 00111 1234578899999999
Q ss_pred HHHHHHhCCCeeeee
Q psy11626 136 VAALKKYGFNGLDLA 150 (596)
Q Consensus 136 ~~~l~~~gfDGvdiD 150 (596)
.-||++|++||+-||
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 218
>PRK08005 epimerase; Validated
Probab=23.72 E-value=2e+02 Score=28.33 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEEE
Q psy11626 295 TTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASV 374 (596)
Q Consensus 295 ~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~av 374 (596)
..+..+.+.|.|-+-+-+|-. .+...+++.+|+ .|....+|+
T Consensus 72 ~~i~~~~~~gad~It~H~Ea~----------------------------------~~~~~~l~~Ik~----~G~k~GlAl 113 (210)
T PRK08005 72 RWLPWLAAIRPGWIFIHAESV----------------------------------QNPSEILADIRA----IGAKAGLAL 113 (210)
T ss_pred HHHHHHHHhCCCEEEEcccCc----------------------------------cCHHHHHHHHHH----cCCcEEEEE
Confidence 355666777888888888831 122334444444 478888999
Q ss_pred cCCcCcccccChhhHhhhccEeEEeccc
Q psy11626 375 LPHVNYTVYFDVPSITQHLDMITLHAYD 402 (596)
Q Consensus 375 ~~~~~~~~~~d~~~i~~~vD~i~vM~YD 402 (596)
.|..... .+..+.+.+|+|.||+-+
T Consensus 114 nP~Tp~~---~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 114 NPATPLL---PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CCCCCHH---HHHHHHHhcCEEEEEEec
Confidence 8865432 245567889999999975
No 219
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.05 E-value=1.8e+02 Score=30.63 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEE
Q psy11626 131 FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLS 210 (596)
Q Consensus 131 f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls 210 (596)
.......++.++|+|+|||+-=.|...-. .++.|+.+= .+.+.+..++++++++.+ ..-+|
T Consensus 80 ~l~eaA~~~~~~g~~~IdlN~GCP~~~V~--~~g~Ga~Ll---------------~~p~lv~~iv~a~~~av~--~iPVT 140 (323)
T COG0042 80 LLAEAAKIAEELGADIIDLNCGCPSPKVV--KGGAGAALL---------------KNPELLAEIVKAMVEAVG--DIPVT 140 (323)
T ss_pred HHHHHHHHHHhcCCCEEeeeCCCChHHhc--CCCcchhhc---------------CCHHHHHHHHHHHHHhhC--CCCeE
Confidence 34456778889999999999999976543 233444331 356889999999999986 33444
Q ss_pred EE
Q psy11626 211 AS 212 (596)
Q Consensus 211 ~a 212 (596)
+=
T Consensus 141 VK 142 (323)
T COG0042 141 VK 142 (323)
T ss_pred EE
Confidence 43
No 220
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=23.02 E-value=4.5e+02 Score=26.11 Aligned_cols=85 Identities=13% Similarity=0.336 Sum_probs=51.3
Q ss_pred HHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccc
Q psy11626 89 QITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSI 168 (596)
Q Consensus 89 ~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~ 168 (596)
++.+.-++.++-.+++-|-|++. .|... +....++....+++|+-|=+-||+..... +
T Consensus 7 ~~~~~l~~~~~~~vlvfVHGyn~-----~f~~a----------~~r~aql~~~~~~~~~~i~FsWPS~g~~~-----~-- 64 (233)
T PF05990_consen 7 QLNQRLAKSPDKEVLVFVHGYNN-----SFEDA----------LRRAAQLAHDLGFPGVVILFSWPSDGSLL-----G-- 64 (233)
T ss_pred HHHHHHhhCCCCeEEEEEeCCCC-----CHHHH----------HHHHHHHHHHhCCCceEEEEEcCCCCChh-----h--
Confidence 34443334468999999999987 23321 22244567778899999999999764210 0
Q ss_pred hhcccccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 169 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 169 ~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
+...+ +........|..||+.|++...
T Consensus 65 Y~~d~--------~~a~~s~~~l~~~L~~L~~~~~ 91 (233)
T PF05990_consen 65 YFYDR--------ESARFSGPALARFLRDLARAPG 91 (233)
T ss_pred hhhhh--------hhHHHHHHHHHHHHHHHHhccC
Confidence 11111 1222345678888888877733
No 221
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=23.00 E-value=1.4e+02 Score=32.10 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHHHHhhhCCCceEEEEEc-CCCC-CCChhhhhhhc-CCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCcccccccc
Q psy11626 89 QITALKTFQPNLNIMLSVG-GFED-DDDKEKYLEVL-DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTL 165 (596)
Q Consensus 89 ~~~~lk~~~p~lkvllsiG-G~~~-~~~s~~f~~~~-~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~ 165 (596)
.++...++| ||.|+-.|- -|.. ..+.+-+..|+ .+++-.--|+..++++.+-|||||--|+=|-.+..
T Consensus 131 DVIDaaHrN-GVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~-------- 201 (553)
T COG4724 131 DVIDAAHRN-GVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDV-------- 201 (553)
T ss_pred hhhhhhhcC-CCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCC--------
Confidence 455555665 999885442 1110 00134556665 45555668999999999999999999988854332
Q ss_pred ccchhcccccccCCCCCCCccchHHHHHHHHHHHHHh
Q psy11626 166 GSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202 (596)
Q Consensus 166 ~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l 202 (596)
+++.+++..||..+++.-
T Consensus 202 -------------------~~~a~~M~~f~ly~ke~~ 219 (553)
T COG4724 202 -------------------KPLAEKMRQFMLYSKEYA 219 (553)
T ss_pred -------------------cchHHHHHHHHHHHHhcc
Confidence 246788888888887653
No 222
>PLN02411 12-oxophytodienoate reductase
Probab=22.92 E-value=2.4e+02 Score=30.54 Aligned_cols=76 Identities=14% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHH-HHHHHHHHhccCC
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTL-LIREMKAAFRAEN 367 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~-flkelr~~l~~~~ 367 (596)
.+.|++.. +.+++-|||||+|--.+= |=+..+..-.-++-+... .++.++|..|.. .|+++|+++...
T Consensus 164 i~~f~~AA-~rA~~AGFDGVEIH~AhG--------YLl~QFLSp~tN~RtDeY-GGSlENR~RF~lEIi~aVr~~vg~d- 232 (391)
T PLN02411 164 VEHYRQAA-LNAIRAGFDGIEIHGAHG--------YLIDQFLKDGINDRTDEY-GGSIENRCRFLMQVVQAVVSAIGAD- 232 (391)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccccc--------hHHHHhCCCccCCCCCcC-CCCHHHHhHHHHHHHHHHHHHcCCC-
Confidence 45566654 455668999999986531 000011110011111111 124455555554 566677777654
Q ss_pred cEEEEEEcC
Q psy11626 368 FLLSASVLP 376 (596)
Q Consensus 368 ~~Ls~av~~ 376 (596)
+ |.+.+++
T Consensus 233 ~-vgvRiS~ 240 (391)
T PLN02411 233 R-VGVRVSP 240 (391)
T ss_pred e-EEEEEcc
Confidence 4 7777765
No 223
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=22.84 E-value=1.8e+02 Score=31.19 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEE
Q psy11626 132 IETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA 211 (596)
Q Consensus 132 ~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~ 211 (596)
..+.++.+.++||..|-.-.--|.. |.+.+..-+++|-+..++.++.+.+
T Consensus 16 ~~~yi~~a~~~Gf~~iFTSL~ipe~------------------------------~~~~~~~~~~~l~~~a~~~~~~v~~ 65 (357)
T PF05913_consen 16 NKAYIEKAAKYGFKRIFTSLHIPED------------------------------DPEDYLERLKELLKLAKELGMEVIA 65 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEEE---------------------------------------HHHHHHHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHHCCCCEEECCCCcCCC------------------------------CHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4556778889999999877665532 3567777777787888889999999
Q ss_pred EecCCc
Q psy11626 212 SVLPHV 217 (596)
Q Consensus 212 av~~~~ 217 (596)
-|.|..
T Consensus 66 Disp~~ 71 (357)
T PF05913_consen 66 DISPKV 71 (357)
T ss_dssp EE-CCH
T ss_pred ECCHHH
Confidence 998753
No 224
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.84 E-value=5.6e+02 Score=26.55 Aligned_cols=102 Identities=12% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecc-cccccCCCCCCCccChHHH-HHHHHHHHHHhccC
Q psy11626 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKI-KKTVTGPKDDNPTLHREHF-TLLIREMKAAFRAE 366 (596)
Q Consensus 289 r~~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~d~~~f-~~flkelr~~l~~~ 366 (596)
.+.|++.+ +.+++.|||||+|....... +.. |... -++-+.. ..++.+.+..| ...++++|+++..
T Consensus 140 i~~~~~aA-~~a~~aGfDgveih~~~gyL--------~~q-Flsp~~n~R~d~-yGgs~enr~r~~~eii~avr~~~g~- 207 (327)
T cd02803 140 IEDFAAAA-RRAKEAGFDGVEIHGAHGYL--------LSQ-FLSPYTNKRTDE-YGGSLENRARFLLEIVAAVREAVGP- 207 (327)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEcchhhhH--------HHH-hcCccccCCCcc-cCCCHHHHHHHHHHHHHHHHHHcCC-
Confidence 35555544 44456899999999863210 000 0000 0000000 01123333333 3466667776643
Q ss_pred CcEEEEEEcCCcCcccccC-------hhhHhhh-ccEeEEeccc
Q psy11626 367 NFLLSASVLPHVNYTVYFD-------VPSITQH-LDMITLHAYD 402 (596)
Q Consensus 367 ~~~Ls~av~~~~~~~~~~d-------~~~i~~~-vD~i~vM~YD 402 (596)
++.|.+.+.+.......++ .+.+.+. +|||+|..-+
T Consensus 208 d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 208 DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4677777765432222222 2234333 8999987654
No 225
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=22.36 E-value=77 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccceee
Q psy11626 286 PKYRKSFIETTVAALKKYGFNGLDLAW 312 (596)
Q Consensus 286 ~~~r~~~i~~~i~~~~~~g~dGi~ld~ 312 (596)
+..|..+++.+++.+..-.+|||-+|-
T Consensus 49 ~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 49 PDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred chHHHHHHHHHHHHHhcCccceeeeec
Confidence 899999999999999999999998884
No 226
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=22.06 E-value=92 Score=32.54 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEE
Q psy11626 291 SFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLL 370 (596)
Q Consensus 291 ~~i~~~i~~~~~~g~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~L 370 (596)
..+...++.+...+++||||+++=|...- ..+.....--.+.+....++++++++++ ..+
T Consensus 66 ~~~~~aa~~~~~~~~~~IDlN~GCP~~~v-----------------~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pv 125 (309)
T PF01207_consen 66 EDLAEAAEIVAELGFDGIDLNMGCPAPKV-----------------TKGGAGAALLKDPDLLAEIVKAVRKAVP---IPV 125 (309)
T ss_dssp HHHHHHHHHHCCTT-SEEEEEE---SHHH-----------------HHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEE
T ss_pred HHHHHHHHhhhccCCcEEeccCCCCHHHH-----------------hcCCcChhhhcChHHhhHHHHhhhcccc---cce
Confidence 34555566777789999999999775321 1111111123467788889999998876 445
Q ss_pred EEEEcCCcC--cccccChh-hHhhh-ccEeEEec
Q psy11626 371 SASVLPHVN--YTVYFDVP-SITQH-LDMITLHA 400 (596)
Q Consensus 371 s~av~~~~~--~~~~~d~~-~i~~~-vD~i~vM~ 400 (596)
|+-+-.... .....++- .+.+. ++.|.|.+
T Consensus 126 svKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 126 SVKIRLGWDDSPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp EEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred EEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence 544432221 11122222 23333 88888865
No 227
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.95 E-value=3.5e+02 Score=27.82 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeeeeccCCC
Q psy11626 122 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV 155 (596)
Q Consensus 122 ~~~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~ 155 (596)
..+++.|+-|.+.+.+.+.+.|+||+=+|+-.|.
T Consensus 128 ~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~ 161 (292)
T cd06595 128 LTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGN 161 (292)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 4578889999999999999999999999985443
No 228
>KOG0183|consensus
Probab=21.53 E-value=5.2e+02 Score=25.55 Aligned_cols=91 Identities=24% Similarity=0.292 Sum_probs=49.3
Q ss_pred Cccc-EEEEEEEEecCCCceEEecC-----CccccccccchhhhHHH-HHHHhhhC---CCceEE---EEEcCCCCCC--
Q psy11626 49 SMCT-HLVYGFAGISDSGDYHIKSL-----DKELDTDKNKGKELFKQ-ITALKTFQ---PNLNIM---LSVGGFEDDD-- 113 (596)
Q Consensus 49 ~~~T-hviyafa~v~~~g~~~~~~~-----~~~~d~~~~~~~~~~~~-~~~lk~~~---p~lkvl---lsiGG~~~~~-- 113 (596)
+.+. ||..+|+++++|..+-+.-. ...+.+....+-+.+.+ ++.+|+++ +|.+.+ .-|||...++
T Consensus 64 ~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p 143 (249)
T KOG0183|consen 64 SMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTP 143 (249)
T ss_pred eeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCe
Confidence 3455 99999999997754322110 00011111112334433 55588775 565554 5578877642
Q ss_pred ------ChhhhhhhcCCHHHHHHHHHHHHHHHHH
Q psy11626 114 ------DKEKYLEVLDDPKYRKSFIETTVAALKK 141 (596)
Q Consensus 114 ------~s~~f~~~~~~~~~r~~f~~si~~~l~~ 141 (596)
.++.|+.--.++.-| -.+.+-+||.+
T Consensus 144 ~lyqtePsG~f~ewka~aiGr--~sk~VrEflEK 175 (249)
T KOG0183|consen 144 RLYQTEPSGIFSEWKANAIGR--SSKTVREFLEK 175 (249)
T ss_pred eeEeeCCCcchhhhhcccccc--ccHHHHHHHHH
Confidence 155666555444333 34667788877
No 229
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=21.48 E-value=1.1e+02 Score=25.12 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=26.6
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHHHHhCCC
Q psy11626 116 EKYLEVLDDPKYRKSFIETTVAALKKYGFN 145 (596)
Q Consensus 116 ~~f~~~~~~~~~r~~f~~si~~~l~~~gfD 145 (596)
..|..+..+++.|++|.++=-+++++||+.
T Consensus 7 ~~~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 7 KLLEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 356778899999999999999999999875
No 230
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.41 E-value=2.8e+02 Score=25.12 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=33.4
Q ss_pred HHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhc-CCHHHHHHHHHHHHHHHHHhCCCeeee
Q psy11626 87 FKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVL-DDPKYRKSFIETTVAALKKYGFNGLDL 149 (596)
Q Consensus 87 ~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~-~~~~~r~~f~~si~~~l~~~gfDGvdi 149 (596)
++-++.+.++. |++||+-|==- .+.|..-+ -+.+.|+.+.+.|...++++||.=+|+
T Consensus 38 l~l~L~~~k~~-g~~~lfVi~Pv-----Ng~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 38 LQLLLDVCKEL-GIDVLFVIQPV-----NGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHT-T-EEEEEE---------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHc-CCceEEEecCC-----cHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 34555533332 88888655321 23444444 378999999999999999999966664
No 231
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=21.37 E-value=4.7e+02 Score=26.18 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhh
Q psy11626 124 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFR 203 (596)
Q Consensus 124 ~~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~ 203 (596)
|.+....|+..+.+-.. ..+|-.|.|...+ +++...+.+++||+.|+
T Consensus 87 d~~~~adYl~~l~~aA~-----P~~L~iEgP~d~g----------------------------~r~~QI~~l~~Lr~~L~ 133 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAA-----PFKLRIEGPMDAG----------------------------SREAQIEALAELREELD 133 (248)
T ss_dssp -HHHHHHHHHHHHHHHT-----TS-EEEE-SB--S----------------------------SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcC-----CCeeeeeCCcCCC----------------------------ChHHHHHHHHHHHHHHH
Confidence 55666666666665554 3567889998763 57899999999999999
Q ss_pred hcCcEEEEEecCCcccccccchhhh--hcccceeeeecccccc
Q psy11626 204 AENFLLSASVLPHVNYTVYFDVPSI--TQHLDMITLHAYDFLY 244 (596)
Q Consensus 204 ~~~~~ls~av~~~~~~~~~~~~~~~--~~~~d~i~~m~Yd~~~ 244 (596)
+++..+-+.. ..+....-|+... ++..|+|.+.|=|..+
T Consensus 134 ~~g~~v~iVA--DEWCNT~eDI~~F~da~A~dmVQIKtPDLGg 174 (248)
T PF07476_consen 134 RRGINVEIVA--DEWCNTLEDIREFADAKAADMVQIKTPDLGG 174 (248)
T ss_dssp HCT--EEEEE---TT--SHHHHHHHHHTT-SSEEEE-GGGGSS
T ss_pred hcCCCCeEEe--ehhcCCHHHHHHHHhcCCcCEEEecCCCccc
Confidence 9986666553 2333333355544 4678888888887654
No 232
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.31 E-value=8.2e+02 Score=24.35 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=53.5
Q ss_pred hhHHHHHHHhhhCCCceEEEEEcCCCCCCChhhhhhhcCCHHHHH---HHHHHHHHHHHHhCCCeeeeeccCCCcCcccc
Q psy11626 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRK---SFIETTVAALKKYGFNGLDLAWEFPVVTEKHE 161 (596)
Q Consensus 85 ~~~~~~~~lk~~~p~lkvllsiGG~~~~~~s~~f~~~~~~~~~r~---~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~ 161 (596)
...+++.++.+++ +++|. |++.... .-.|.-...++..|+ .++...+++.+..|..-|-+- |...+.
T Consensus 47 ~~~~~l~~~~~~~-gl~v~-s~~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~---~~~~~~-- 116 (275)
T PRK09856 47 GGIKQIKALAQTY-QMPII-GYTPETN---GYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLIS---AAHAGY-- 116 (275)
T ss_pred hHHHHHHHHHHHc-CCeEE-EecCccc---CcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEc---CCCCCC--
Confidence 4556676655554 89874 5542111 011111223444554 467788889999999988763 211100
Q ss_pred ccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEEEE
Q psy11626 162 SYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA 211 (596)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~ls~ 211 (596)
.....+..+.+...+++|.+...+.|..|.+
T Consensus 117 -------------------~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 117 -------------------LTPPNVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 0011233566777777777777777754443
No 233
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.83 E-value=8.6e+02 Score=24.92 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=35.8
Q ss_pred HHHHHHHHhC-CCccceeeecCcccCCccccccccceecccccccCCCCCCCccChHHHHHHHHHHHHHhccCCcEEEEE
Q psy11626 295 TTVAALKKYG-FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSAS 373 (596)
Q Consensus 295 ~~i~~~~~~g-~dGi~ld~e~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~f~~flkelr~~l~~~~~~Ls~a 373 (596)
.+.+.+++.| +|+++|++.-|.....| .. -..+......+++++|++. ++.+++-
T Consensus 108 ~~a~~~~~aG~~D~iElN~~cP~~~~gg------------------~~---~~~~~~~~~eiv~~vr~~~---~~pv~vK 163 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISCPNVKHGG------------------MA---FGTDPELAYEVVKAVKEVV---KVPVIVK 163 (301)
T ss_pred HHHHHHhccCCcCEEEEECCCCCCCCCc------------------cc---cccCHHHHHHHHHHHHHhc---CCCEEEE
Confidence 3455567888 99999999888643211 00 1123455666777777765 4566666
Q ss_pred EcC
Q psy11626 374 VLP 376 (596)
Q Consensus 374 v~~ 376 (596)
+.+
T Consensus 164 l~~ 166 (301)
T PRK07259 164 LTP 166 (301)
T ss_pred cCC
Confidence 665
No 234
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=20.65 E-value=2.2e+02 Score=29.30 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccchhcccccccCCCCCCCccchHHHHHHHHHHHHHhhhcCcEE
Q psy11626 131 FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLL 209 (596)
Q Consensus 131 f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~l 209 (596)
.+.+-.+=|.+.|||||-||+--+----. |+. | .+.......+.+|+.++++..++.+-++
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD~y~Y~~---------~~~-~--------~~~~~~~k~m~~~i~~i~~~~ra~~~~~ 187 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVDAYWYVE---------WND-R--------ETGVNAAKKMVKFIAAIAEYARAANPLF 187 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeechHHHHH---------Hhc-c--------cccccHHHHHHHHHHHHHHHHHhcCCcE
Confidence 34455566677799999999743320000 000 0 0122357889999999999998876553
No 235
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.57 E-value=8e+02 Score=26.00 Aligned_cols=196 Identities=16% Similarity=0.259 Sum_probs=86.4
Q ss_pred CCceEEEEEcC---CCCCCC---hhhhhhhcCC--HHHHHHHHHHHHHHHHHhCCCeeeeeccCCCcCccccccccccch
Q psy11626 98 PNLNIMLSVGG---FEDDDD---KEKYLEVLDD--PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIW 169 (596)
Q Consensus 98 p~lkvllsiGG---~~~~~~---s~~f~~~~~~--~~~r~~f~~si~~~l~~~gfDGvdiDwE~p~~~~~~~~~~~~~~~ 169 (596)
.|+||||-+.= |.+... ...|..+.-+ .+....+..++++-|+. .|+..||-..+..-. .|=+|
T Consensus 70 ~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~---~G~~pd~VQVGNEin-----~Gmlw 141 (332)
T PF07745_consen 70 AGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA---AGVTPDMVQVGNEIN-----NGMLW 141 (332)
T ss_dssp TT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH---TT--ESEEEESSSGG-----GESTB
T ss_pred CCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCccEEEeCcccc-----ccccC
Confidence 39999998862 322110 2333332111 13334566666666666 557788876665532 22223
Q ss_pred hcccccccCCCCCCCccchHHHHHHHHHHHHHhhh----cCcEEEEEecCCcccccc-c-chhhhhcccceeeeeccccc
Q psy11626 170 HKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA----ENFLLSASVLPHVNYTVY-F-DVPSITQHLDMITLHAYDFL 243 (596)
Q Consensus 170 ~~~~~~~~g~~~~~~~~d~~~~~~ll~~Lr~~l~~----~~~~ls~av~~~~~~~~~-~-~~~~~~~~~d~i~~m~Yd~~ 243 (596)
.. |. ..+-++|..|+++-.++.++ ....|.++-+........ | .+.+..--.|.|-+..|-+-
T Consensus 142 p~------g~-----~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w 210 (332)
T PF07745_consen 142 PD------GK-----PSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFW 210 (332)
T ss_dssp TT------TC-----TT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STT
T ss_pred cC------CC-----ccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCC
Confidence 22 11 34678888888665555554 334444443332211111 1 23333455666666666542
Q ss_pred cCCccccccccc----------ccccccccCCCCC--CCCCCCCCC-CCcccCCChHHHHHHHHHHHHHHHHh---CCCc
Q psy11626 244 YFDVPSITQHLD----------MITLHAYDFRTPQ--RNPKEADYS-APLHFLDDPKYRKSFIETTVAALKKY---GFNG 307 (596)
Q Consensus 244 ~~~~~~~~~~~d----------~~~~~~yd~~g~~--~~~~~~~~~-ap~~~~~~~~~r~~~i~~~i~~~~~~---g~dG 307 (596)
.-....+...+. +|...+|-+.... ..++..+.. .....-.+++.++.|+..+++.+... +--|
T Consensus 211 ~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~G 290 (332)
T PF07745_consen 211 HGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLG 290 (332)
T ss_dssp ST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEE
T ss_pred cchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEE
Confidence 112222222222 2233344443110 011111111 12234557888999999999999884 3344
Q ss_pred cceeee
Q psy11626 308 LDLAWE 313 (596)
Q Consensus 308 i~ld~e 313 (596)
+ +.||
T Consensus 291 v-fYWe 295 (332)
T PF07745_consen 291 V-FYWE 295 (332)
T ss_dssp E-EEE-
T ss_pred E-Eeec
Confidence 3 5676
No 236
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=20.30 E-value=1.7e+02 Score=24.25 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHhhhcC--cEEEEEecCCcccccccchhhhh-cccceeeeecc
Q psy11626 187 HREHFTLLIREMKAAFRAEN--FLLSASVLPHVNYTVYFDVPSIT-QHLDMITLHAY 240 (596)
Q Consensus 187 d~~~~~~ll~~Lr~~l~~~~--~~ls~av~~~~~~~~~~~~~~~~-~~~d~i~~m~Y 240 (596)
..+.+..+++++-+.+++.+ -.||+..... ..-.+..+. +.+|.|.++.|
T Consensus 36 ~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~----~~~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 36 KAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG----DWEDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp TSHHHHHHHHHHHHHHHTT-TTS-EE--B--S-----TTHHHHS--TT-SSEEB-EE
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCcEEeecccC----CHHHHHHhchhcCCEEeeecC
Confidence 46788899999888887743 2344333211 111234444 67777766655
Done!