RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11626
(596 letters)
>gnl|CDD|119352 cd02873, GH18_IDGF, The IDGF's (imaginal disc growth factors) are a
family of growth factors identified in insects that
include at least five members, some of which are encoded
by genes in a tight cluster. The IDGF's have an
eight-stranded alpha/beta barrel fold and are related to
the glycosyl hydrolase family 18 (GH18) chitinases, but
they have an amino acid substitution known to abolish
chitinase catalytic activity. IDGFs may have evolved
from chitinases to gain new functions as growth factors,
interacting with cell surface glycoproteins involved in
growth-promoting processes.
Length = 413
Score = 424 bits (1093), Expect = e-145
Identities = 154/313 (49%), Positives = 207/313 (66%), Gaps = 5/313 (1%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGP-- 340
L+ + R +FI + + LK YGF+GLDLAW+FP K T GS WH KK TG
Sbjct: 100 LESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159
Query: 341 KDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHA 400
D+ H+E FT L+RE+K A R + LL+ +VLPHVN T YFDVP+I ++D + L
Sbjct: 160 VDEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNSTWYFDVPAIANNVDFVNLAT 219
Query: 401 YDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWL 460
+DF TP+RNP+EADY+AP++ +Y R PH N + V++++ G KL LGI T+GR+W
Sbjct: 220 FDFLTPERNPEEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWK 279
Query: 461 LEESSHKSGIPP-LVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDP 519
L + S +G+PP L DG G G TK GLLS+ EIC +L + N + + + LRK DP
Sbjct: 280 LTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDP 339
Query: 520 QRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRGM 579
+R G+YA+R AD+ E+G WVS+E+P+TA KA YAK GLGGVA+ DLSLDDFRG
Sbjct: 340 TKRFGSYAYRPADE--NGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQ 397
Query: 580 CNSNKFPILRAAR 592
C +KFPILR+A+
Sbjct: 398 CTGDKFPILRSAK 410
Score = 281 bits (722), Expect = 3e-89
Identities = 114/256 (44%), Positives = 157/256 (61%), Gaps = 32/256 (12%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G AK+ E+L+PAL CTHLVYG+AGI D+ Y IKSL+++LD DK+ ++ IT+LK
Sbjct: 15 GLAKMSLEDLEPALQFCTHLVYGYAGI-DADTYKIKSLNEDLDLDKS----HYRAITSLK 69
Query: 95 TFQPNLNIMLSVGGFEDDDDK---EKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAW 151
P+L ++LSVGG D D++ EKYL +L+ + R +FI + + LK YGF+GLDLAW
Sbjct: 70 RKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAW 129
Query: 152 EFPVVTEKHESYTLGSIWHKIKKTVTGP--KDDNPTLHREHFTLLIREMKAAFRAENFLL 209
+FP K T GS WH KK TG D+ H+E FT L+RE+K A R + LL
Sbjct: 130 QFPKNKPKKVRGTFGSAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNALRPDGLLL 189
Query: 210 SASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQR 269
+ +VLPHVN T YFDVP+I ++D + L +DF TP+R
Sbjct: 190 TLTVLPHVNSTW----------------------YFDVPAIANNVDFVNLATFDFLTPER 227
Query: 270 NPKEADYSAPLHFLDD 285
NP+EADY+AP++ L +
Sbjct: 228 NPEEADYTAPIYELYE 243
>gnl|CDD|119351 cd02872, GH18_chitolectin_chitotriosidase, This conserved domain
family includes a large number of catalytically inactive
chitinase-like lectins (chitolectins) including YKL-39,
YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic
mammalian chitinase), as well as catalytically active
chitotriosidases. The conserved domain is an
eight-stranded alpha/beta barrel fold belonging to the
family 18 glycosyl hydrolases. The fold has a
pronounced active-site cleft at the C-terminal end of
the beta-barrel. The chitolectins lack a key active
site glutamate (the proton donor required for hydrolytic
activity) but retain highly conserved residues involved
in oligosaccharide binding. Chitotriosidase is a
chitinolytic enzyme expressed in maturing macrophages,
which suggests that it plays a part in antimicrobial
defense. Chitotriosidase hydrolyzes chitotriose, as
well as colloidal chitin to yield chitobiose and is
therefore considered an exochitinase. Chitotriosidase
occurs in two major forms, the large form being
converted to the small form by either RNA or
post-translational processing. Although the small form,
containing the chitinase domain alone, is sufficient for
the chitinolytic activity, the additional C-terminal
chitin-binding domain of the large form plays a role in
processing colloidal chitin. The chitotriosidase gene is
nonessential in humans, as about 35% of the population
are heterozygous and 6% homozygous for an inactivated
form of the gene. HCGP39 is a 39-kDa human cartilage
glycoprotein thought to play a role in connective tissue
remodeling and defense against pathogens.
Length = 362
Score = 192 bits (489), Expect = 1e-55
Identities = 103/316 (32%), Positives = 153/316 (48%), Gaps = 57/316 (18%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
P+ RK+FI++ +A L+KYGF+GLDL WE+P GP +D
Sbjct: 93 SPENRKTFIKSAIAFLRKYGFDGLDLDWEYPG-------------------QRGGPPED- 132
Query: 345 PTLHREHFTLLIREMKAAFRAE--NFLLSASV--LPHVNYTVYFDVPSITQHLDMITLHA 400
+E+F L++E++ AF E LL+A+V Y D+P I+++LD I +
Sbjct: 133 ----KENFVTLLKELREAFEPEAPRLLLTAAVSAGKETIDAAY-DIPEISKYLDFINVMT 187
Query: 401 YDFRTPQRNPKEADYSAPLH---FVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGR 457
YDF +++PL+ G + N + +++++ G +KLVLGIPT+GR
Sbjct: 188 YDFHGS--WEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLVLGIPTYGR 245
Query: 458 SW-LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQ 516
S+ L S+ G P A G G G T+E G L+Y EIC L S
Sbjct: 246 SFTLASPSNTGVGAP---ASGPGTAGPYTREAGFLAYYEICEFLKSGWT--------VVW 294
Query: 517 EDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+D Q+ YA+ K Q WV +++ E+ K Y K GLGG + + LDDF
Sbjct: 295 DDEQK--VPYAY-----KGNQ----WVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343
Query: 577 RGMCNSNKFPILRAAR 592
RG C K+P+L A
Sbjct: 344 RGTCGQGKYPLLNAIN 359
Score = 154 bits (391), Expect = 1e-41
Identities = 72/212 (33%), Positives = 110/212 (51%), Gaps = 39/212 (18%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
G K PE + P L CTH++Y FAG++ D +I LD+ D D L+++ ALK
Sbjct: 14 GNGKFVPENIDPFL--CTHIIYAFAGLNP--DGNIIILDEWNDIDLG----LYERFNALK 65
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
PNL +L++GG+ K+ + P+ RK+FI++ +A L+KYGF+GLDL WE+P
Sbjct: 66 EKNPNLKTLLAIGGWNFGS--AKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYP 123
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE--NFLLSAS 212
GP +D +E+F L++E++ AF E LL+A+
Sbjct: 124 G-------------------QRGGPPED-----KENFVTLLKELREAFEPEAPRLLLTAA 159
Query: 213 V--LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
V Y D+P I+++LD I + YDF
Sbjct: 160 VSAGKETIDAAY-DIPEISKYLDFINVMTYDF 190
>gnl|CDD|214753 smart00636, Glyco_18, Glyco_18 domain.
Length = 334
Score = 181 bits (462), Expect = 3e-52
Identities = 95/302 (31%), Positives = 140/302 (46%), Gaps = 59/302 (19%)
Query: 281 HFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGP 340
L DP RK FI++ V+ LKKYGF+G+D+ WE+P G
Sbjct: 84 SMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYP-----------------------GG 120
Query: 341 KDDNPTLHREHFTLLIREMKAAFRAE-----NFLLSASVLPHVNYT--VYFDVPSITQHL 393
+ D+ RE++T L++E++ A E +LL+ +V + Y D+P+I ++L
Sbjct: 121 RGDD----RENYTALLKELREALDKEGAEGKGYLLTIAVPAGPDKIDKGYGDLPAIAKYL 176
Query: 394 DMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIP 453
D I L YDF NP ++APL+ G N + V++++ GV KLVLGIP
Sbjct: 177 DFINLMTYDFHGAWSNP--TGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGIP 234
Query: 454 TFGRSW-LLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSL 512
+GR W L++ S++ G P G G T E G++ Y EIC L
Sbjct: 235 FYGRGWTLVDGSNNGPGAP---FTGPATGGPGTWEGGVVDYREICKLL-----------G 280
Query: 513 LRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572
D + YA+ WVS+++P + KA Y K GLGGV I +L
Sbjct: 281 ATVVYDDTAK-APYAYNPGTG-------QWVSYDDPRSIKAKADYVKDKGLGGVMIWELD 332
Query: 573 LD 574
D
Sbjct: 333 AD 334
Score = 148 bits (377), Expect = 4e-40
Identities = 77/279 (27%), Positives = 119/279 (42%), Gaps = 69/279 (24%)
Query: 30 YFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQ 89
YF + G S TH++Y FA I D + D+ D F Q
Sbjct: 5 YFTNWGVYGRNFPVDDIPASKLTHIIYAFANID--PDGTVTIGDEWADIGN------FGQ 56
Query: 90 ITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDL 149
+ ALK P L ++LS+GG+ + D + +L DP RK FI++ V+ LKKYGF+G+D+
Sbjct: 57 LKALKKKNPGLKVLLSIGGWTESD---NFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDI 113
Query: 150 AWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE---- 205
WE+P G + D+ RE++T L++E++ A E
Sbjct: 114 DWEYP-----------------------GGRGDD----RENYTALLKELREALDKEGAEG 146
Query: 206 -NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDF 264
+LL+ +V + D Y D+P+I ++LD I L YDF
Sbjct: 147 KGYLLTIAVPAGPDK--------------------IDKGYGDLPAIAKYLDFINLMTYDF 186
Query: 265 RTPQRNPKEADYSAPLHFLDDPKYRKSFIETTVAALKKY 303
NP ++APL+ P + + A+K Y
Sbjct: 187 HGAWSNP--TGHNAPLY--AGPGDPEKY--NVDYAVKYY 219
>gnl|CDD|216071 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.
Length = 325
Score = 145 bits (368), Expect = 5e-39
Identities = 87/305 (28%), Positives = 128/305 (41%), Gaps = 64/305 (20%)
Query: 274 ADYSAPLHFL-DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHK 332
+S L D RK+F ++ + LKKYGF+G+D+ WE+P
Sbjct: 81 WTFSGGFSLLASDDAKRKTFADSIIDFLKKYGFDGIDIDWEYPGGKGD------------ 128
Query: 333 IKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE---NFLLSASVLPHVNYTVYFDVPSI 389
++++T L++E++AA + E +LLSA+V + D+ I
Sbjct: 129 ---------------DKDNYTALLKELRAALKKEAKAGYLLSAAVPAGPDKIDGSDIAKI 173
Query: 390 TQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLV 449
++LD I L YDF +APL+ QN + V+++++ GV KLV
Sbjct: 174 GKYLDFINLMTYDFHGW---SNITGPNAPLYD----GSWQNVDYAVQYYLKAGVPASKLV 226
Query: 450 LGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQAS 509
LGIP +GR W L S G P G T E G+LSY EIC L S
Sbjct: 227 LGIPFYGRGWTLVNGSGNGGGAPA-------PGPGTWEGGILSYKEICALLKSGAGPGY- 278
Query: 510 PSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAII 569
Y ++ +VS+++P + KA Y K GLGGV I
Sbjct: 279 ---------DDTAKAPYIYK---------GKQFVSYDDPRSIKAKAKYVKDKGLGGVMIW 320
Query: 570 DLSLD 574
L D
Sbjct: 321 SLDQD 325
Score = 126 bits (317), Expect = 5e-32
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 39/217 (17%)
Query: 30 YFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQ 89
Y+ G G TH++Y FA I +G + DT+ + K F+Q
Sbjct: 6 YYTQWGNYGEGFPLDDIPTDKLTHIIYAFANIDGNG-----TFGNNADTEDDGLKGCFEQ 60
Query: 90 ITALKTFQ-PNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLD 148
+ LK Q P + ++LS+GG + + D RK+F ++ + LKKYGF+G+D
Sbjct: 61 LKDLKKCQNPGVKVLLSIGG---WTFSGGFSLLASDDAKRKTFADSIIDFLKKYGFDGID 117
Query: 149 LAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE--- 205
+ WE+P ++++T L++E++AA + E
Sbjct: 118 IDWEYPGGKGD---------------------------DKDNYTALLKELRAALKKEAKA 150
Query: 206 NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
+LLSA+V + D+ I ++LD I L YDF
Sbjct: 151 GYLLSAAVPAGPDKIDGSDIAKIGKYLDFINLMTYDF 187
>gnl|CDD|119349 cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family
18) type II chitinases hydrolyze chitin, an abundant
polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc)
which is a major component of the cell wall of fungi and
the exoskeleton of arthropods. Chitinases have been
identified in viruses, bacteria, fungi, protozoan
parasites, insects, and plants. The structure of the
GH18 domain is an eight-stranded beta/alpha barrel with
a pronounced active-site cleft at the C-terminal end of
the beta-barrel. The GH18 family includes
chitotriosidase, chitobiase, hevamine, zymocin-alpha,
narbonin, SI-CLP (stabilin-1 interacting chitinase-like
protein), IDGF (imaginal disc growth factor), CFLE
(cortical fragment-lytic enzyme) spore hydrolase, the
type III and type V plant chitinases, the
endo-beta-N-acetylglucosaminidases, and the
chitolectins. The GH85 (glycosyl hydrolase, family 85)
ENGases (endo-beta-N-acetylglucosaminidases) are closely
related to the GH18 chitinases and are included in this
alignment model.
Length = 210
Score = 112 bits (283), Expect = 1e-28
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 39/212 (18%)
Query: 31 FISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQI 90
+ ++ GP+ LS+CTH++Y FA IS G SL+ D + L +
Sbjct: 4 YYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDG-----SLNLFGDKS---EEPLKGAL 55
Query: 91 TALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLA 150
L + +P L +++S+GG+ D + DP R +F + V+ LK YGF+G+D+
Sbjct: 56 EELASKKPGLKVLISIGGWTDSSPFT----LASDPASRAAFANSLVSFLKTYGFDGVDID 111
Query: 151 WEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLS 210
WE+P RE+F L+RE+++A A N+LL+
Sbjct: 112 WEYPG--------------------------AADNSDRENFITLLRELRSALGAANYLLT 145
Query: 211 ASVLPHV-NYTVYFDVPSITQHLDMITLHAYD 241
+V + +DVP+I ++D + + YD
Sbjct: 146 IAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177
Score = 82.8 bits (205), Expect = 5e-18
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 27/130 (20%)
Query: 274 ADYSAPLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKI 333
S+P DP R +F + V+ LK YGF+G+D+ WE+P
Sbjct: 74 WTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPG----------------- 116
Query: 334 KKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHV-NYTVYFDVPSITQH 392
RE+F L+RE+++A A N+LL+ +V + +DVP+I +
Sbjct: 117 ---------AADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLGYAYDVPAIGDY 167
Query: 393 LDMITLHAYD 402
+D + + YD
Sbjct: 168 VDFVNVMTYD 177
>gnl|CDD|119358 cd02879, GH18_plant_chitinase_class_V, The class V plant chitinases
have a glycosyl hydrolase family 18 (GH18) domain, but
lack the chitin-binding domain present in other GH18
enzymes. The GH18 domain of the class V chitinases has
endochitinase activity in some cases and no catalytic
activity in others. Included in this family is a lectin
found in black locust (Robinia pseudoacacia) bark, which
binds chitin but lacks chitinase activity. Also
included is a chitinase-related receptor-like kinase
(CHRK1) from tobacco (Nicotiana tabacum), with an
N-terminal GH18 domain and a C-terminal kinase domain,
which is thought to be part of a plant signaling
pathway. The GH18 domain of CHRK1 is expressed
extracellularly where it binds chitin but lacks
chitinase activity.
Length = 299
Score = 101 bits (254), Expect = 7e-24
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 44/189 (23%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
DP RK+FI +++ +KYGF+GLDL WEFP +
Sbjct: 89 DPTARKAFINSSIKVARKYGFDGLDLDWEFP----------------------------S 120
Query: 345 PTLHREHFTLLIREMKAAFRAEN-------FLLSASVLPHVNYTVYFD-----VPSITQH 392
+ E+F L+ E +AA + E LL+A+V + D + +I ++
Sbjct: 121 SQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAINKN 180
Query: 393 LDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGI 452
LD + + AYD+ + +A L Y + + + ++ +I+ GV +KLVLG+
Sbjct: 181 LDWVNVMAYDYYGSWESNTTG-PAAAL---YDPNSNVSTDYGIKSWIKAGVPAKKLVLGL 236
Query: 453 PTFGRSWLL 461
P +GR+W L
Sbjct: 237 PLYGRAWTL 245
Score = 80.9 bits (200), Expect = 9e-17
Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 53/220 (24%)
Query: 40 GPEELKPAL---SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTF 96
EE P+ S+ THL Y FA + D Y E+ + E +K
Sbjct: 12 WSEEFPPSNIDSSLFTHLFYAFADL-DPSTY-------EVVISPSDESEFSTFTETVKRK 63
Query: 97 QPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVV 156
P++ +LS+GG D + + DP RK+FI +++ +KYGF+GLDL WEFP
Sbjct: 64 NPSVKTLLSIGG--GGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFP-- 119
Query: 157 TEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAEN-------FLL 209
+ + E+F L+ E +AA + E LL
Sbjct: 120 --------------------------SSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLL 153
Query: 210 SASVLPHVNYTVYFD-----VPSITQHLDMITLHAYDFLY 244
+A+V + D + +I ++LD + + AYD+
Sbjct: 154 TAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYG 193
Score = 32.7 bits (75), Expect = 0.48
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 541 TWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDD 575
TW+ +++ ++ K YAK GL G + DD
Sbjct: 260 TWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDD 294
>gnl|CDD|119365 cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18)
type II chitinases hydrolyze chitin, an abundant polymer
of N-acetylglucosamine and have been identified in
bacteria, fungi, insects, plants, viruses, and protozoan
parasites. The structure of this domain is an
eight-stranded alpha/beta barrel with a pronounced
active-site cleft at the C-terminal end of the
beta-barrel.
Length = 322
Score = 101 bits (253), Expect = 2e-23
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 40/208 (19%)
Query: 52 THLVYGFAGISDSG----------DYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLN 101
TH+ Y FA I G D +S+D DTD K F Q+ LK P+L
Sbjct: 27 THINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQKNPHLK 86
Query: 102 IMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHE 161
I+LS+GG+ + + R F ++ V ++KYGF+G+D+ WE+P
Sbjct: 87 ILLSIGGWTWSGG---FSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPG 143
Query: 162 SYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA------ENFLLSASVLP 215
V P+D +E+FTLL++E++ A A +LL+ + P
Sbjct: 144 -------------NVARPED------KENFTLLLKELREALDALGAETGRKYLLTIAA-P 183
Query: 216 HVNYTV-YFDVPSITQHLDMITLHAYDF 242
+ +V I ++LD I L YDF
Sbjct: 184 AGPDKLDKLEVAEIAKYLDFINLMTYDF 211
Score = 89.6 bits (223), Expect = 1e-19
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
R F ++ V ++KYGF+G+D+ WE+P V P+D
Sbjct: 106 TEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPG-------------NVARPED-- 150
Query: 345 PTLHREHFTLLIREMKAAFRA------ENFLLSASVLPHVNYTV-YFDVPSITQHLDMIT 397
+E+FTLL++E++ A A +LL+ + P + +V I ++LD I
Sbjct: 151 ----KENFTLLLKELREALDALGAETGRKYLLTIAA-PAGPDKLDKLEVAEIAKYLDFIN 205
Query: 398 LHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQN-ANAMVRWFIEHGVELQKLVLGIPTFG 456
L YDF N + + L+ P +A V +++ GV +KLVLG+P +G
Sbjct: 206 LMTYDFHGAWSNT--TGHHSNLYASPADPPGGYSVDAAVNYYLSAGVPPEKLVLGVPFYG 263
Query: 457 RSW 459
R W
Sbjct: 264 RGW 266
Score = 39.9 bits (94), Expect = 0.003
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 540 GTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574
T++S+++P + KA Y K GLGGV +LS D
Sbjct: 288 KTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322
>gnl|CDD|225862 COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism].
Length = 441
Score = 69.4 bits (170), Expect = 2e-12
Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 54/311 (17%)
Query: 284 DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDD 343
D R++F ++ V ++ YGF+G+D+ WE+P PKD
Sbjct: 147 ADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGD-------------AGNCGRPKD- 192
Query: 344 NPTLHREHFTLLIREMKAAF---RAEN---FLLSASVLPHVNYTV-YFDVPSITQHLDMI 396
+ ++ LL++E++ E+ + L+ P + + I Q++D I
Sbjct: 193 -----KANYVLLLQELRKKLDKAGVEDGRHYQLT-IAAPASKDKLEGLNHAEIAQYVDYI 246
Query: 397 TLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNAN----------AMVRWFIEHGVELQ 446
+ YDF + A L+ P N + V
Sbjct: 247 NIMTYDFHGAWNE--TLGHHAALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPS 304
Query: 447 KLVLGIPTFGRSWLLEESSHKSGIPPL--VADGAG-EKGTITKEEGLLSYAEICPQLVSI 503
KLVLG+P +GR W + P L D +G KGT G Y + +
Sbjct: 305 KLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGNGDKDYG----KAYDL 360
Query: 504 TNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGL 563
A + + D + +K G ++S+++P + KA Y L
Sbjct: 361 DANNAGKNGYERYWDDV---AKAPYLYNPEK-----GVFISYDDPRSVKAKAEYVADNNL 412
Query: 564 GGVAIIDLSLD 574
GG+ ++S D
Sbjct: 413 GGMMFWEISGD 423
Score = 65.5 bits (160), Expect = 3e-11
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 43/211 (20%)
Query: 52 THLVYGFAGISDSGDYHIKSLD-------------KELDTDKNKGKELFKQITALKTFQP 98
TH+ Y F I+ G + ELD + K F + LK P
Sbjct: 66 THINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHFGALFDLKATYP 125
Query: 99 NLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTE 158
+L ++S+GG+ D + ++ D R++F ++ V ++ YGF+G+D+ WE+P
Sbjct: 126 DLKTLISIGGWSDSGG---FSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGG 182
Query: 159 KHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF---RAEN---FLLSAS 212
PKD + ++ LL++E++ E+ + L+
Sbjct: 183 D-------------AGNCGRPKD------KANYVLLLQELRKKLDKAGVEDGRHYQLT-I 222
Query: 213 VLPHVNYTV-YFDVPSITQHLDMITLHAYDF 242
P + + I Q++D I + YDF
Sbjct: 223 AAPASKDKLEGLNHAEIAQYVDYINIMTYDF 253
>gnl|CDD|119353 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme
(CFLE) is a peptidoglycan hydrolase involved in
bacterial endospore germination. CFLE is expressed as
an inactive preprotein (called SleB) in the forespore
compartment of sporulating cells. SleB translocates
across the forespore inner membrane and is deposited as
a mature enzyme in the cortex layer of the spore. As
part of a sensory mechanism capable of initiating
germination, CFLE degrades a spore-specific
peptidoglycan constituent called muramic-acid
delta-lactam that comprises the outer cortex. CFLE has
a C-terminal glycosyl hydrolase family 18 (GH18)
catalytic domain as well as two N-terminal LysM
peptidoglycan-binding domains. In addition to SleB,
this family includes YaaH, YdhD, and YvbX from Bacillus
subtilis.
Length = 313
Score = 64.2 bits (157), Expect = 4e-11
Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 96/308 (31%)
Query: 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPK 341
L +P+ R+ I +A KKYG++G+++ +E P+
Sbjct: 81 VLSNPEARQRLINNILALAKKYGYDGVNIDFEN-----------------------VPPE 117
Query: 342 DDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHV------NYTVYFDVPSITQHLDM 395
D RE +T +RE+ + LS +V+P N++ +D +I + +D
Sbjct: 118 D------REAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDF 171
Query: 396 ITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWF---IEHGVEL---QKLV 449
+ L YD+ H+ G P A + W +++ V +K++
Sbjct: 172 VVLMTYDW----------------HWRGG--PPG-PVAPIGWVERVLQYAVTQIPREKIL 212
Query: 450 LGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQAS 509
LGIP +G W L +K G +I+ QA
Sbjct: 213 LGIPLYGYDWTLP---YKKGGKA----------------------------STISPQQAI 241
Query: 510 PSLLRKQEDPQ--RRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVA 567
R + Q + FR D++ ++ V FE+ + K AK GL GV+
Sbjct: 242 NLAKRYGAEIQYDEEAQSPFFRYVDEQGRRH---EVWFEDARSLQAKFELAKEYGLRGVS 298
Query: 568 IIDLSLDD 575
L L+D
Sbjct: 299 YWRLGLED 306
Score = 47.3 bits (113), Expect = 1e-05
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 36/151 (23%)
Query: 99 NLNIMLSVGGFEDDD-DKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVT 157
+ +L + + + D E VL +P+ R+ I +A KKYG++G+++ +E
Sbjct: 58 GVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFEN---- 113
Query: 158 EKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHV 217
P+D RE +T +RE+ + LS +V+P
Sbjct: 114 -------------------VPPED------REAYTQFLRELSDRLHPAGYTLSTAVVPKT 148
Query: 218 ------NYTVYFDVPSITQHLDMITLHAYDF 242
N++ +D +I + +D + L YD+
Sbjct: 149 SADQFGNWSGAYDYAAIGKIVDFVVLMTYDW 179
>gnl|CDD|119354 cd02875, GH18_chitobiase, Chitobiase (also known as
di-N-acetylchitobiase) is a lysosomal glycosidase that
hydrolyzes the reducing-end N-acetylglucosamine from the
chitobiose core of oligosaccharides during the ordered
degradation of asparagine-linked glycoproteins in
eukaryotes. Chitobiase can only do so if the asparagine
that joins the oligosaccharide to protein is previously
removed by a glycosylasparaginase. Chitobiase is
therefore the final step in the lysosomal degradation of
the protein/carbohydrate linkage component of
asparagine-linked glycoproteins. The catalytic domain of
chitobiase is an eight-stranded alpha/beta barrel fold
similar to that of other family 18 glycosyl hydrolases
such as hevamine and chitotriosidase.
Length = 358
Score = 54.0 bits (130), Expect = 9e-08
Identities = 66/326 (20%), Positives = 118/326 (36%), Gaps = 83/326 (25%)
Query: 279 PLHFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVT 338
PL + +P YR +I+ V K +G+++ E P+ E Y
Sbjct: 87 PLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYY-------------- 132
Query: 339 GPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVP----------- 387
T L++E AF+ EN Y + FDV
Sbjct: 133 ------------ALTELVKETTKAFKKENP----------GYQISFDVAWSPSCIDKRCY 170
Query: 388 ---SITQHLDMITLHAYDFRTP-QRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGV 443
I D + + YD ++ A ++P Q + F + G+
Sbjct: 171 DYTGIADASDFLVVMDYDEQSQIWGKECIAGANSP--------YSQTLSGYNN-FTKLGI 221
Query: 444 ELQKLVLGIPTFGRSWLLEESSHKSG---IPPLVADGAGEKGTITKEEGLLSYAEICPQL 500
+ +KLV+G+P +G + + + IP + GA ++ + Y+EI Q+
Sbjct: 222 DPKKLVMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQ---IPYSEIMKQI 278
Query: 501 VSITNAQASPSLLRKQEDPQRRLGTYAFRLADKK--LKQEYGTWVSFEEPETAGYKASYA 558
N+ L ++ + DK+ L Q V ++ P++ K +YA
Sbjct: 279 ----NSSIGGRLWDSEQKS------PFYNYKDKQGNLHQ-----VWYDNPQSLSIKVAYA 323
Query: 559 KLAGLGGVAIIDLSLDDFRGMCNSNK 584
K GL G+ + + L D+ G+ + K
Sbjct: 324 KNLGLKGIGMWNGDLLDYSGLPIAEK 349
Score = 31.6 bits (72), Expect = 1.2
Identities = 30/145 (20%), Positives = 47/145 (32%), Gaps = 44/145 (30%)
Query: 119 LEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTG 178
LE + +P YR +I+ V K +G+++ E P+ E Y
Sbjct: 88 LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYY--------------- 132
Query: 179 PKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLH 238
T L++E AF+ EN Y + FDV +
Sbjct: 133 -----------ALTELVKETTKAFKKENP----------GYQISFDVAWSPSCI------ 165
Query: 239 AYDFLYFDVPSITQHLDMITLHAYD 263
D +D I D + + YD
Sbjct: 166 --DKRCYDYTGIADASDFLVVMDYD 188
>gnl|CDD|119362 cd06545, GH18_3CO4_chitinase, The Bacteroides thetaiotaomicron
protein represented by pdb structure 3CO4 is an
uncharacterized bacterial member of the family 18
glycosyl hydrolases with homologs found in
Flavobacterium, Stigmatella, and Pseudomonas.
Length = 253
Score = 45.5 bits (108), Expect = 3e-05
Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 42/178 (23%)
Query: 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPK 341
L+DP RK+ ++ + + Y +G+D+ E P VT
Sbjct: 77 ALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTF---------------------- 114
Query: 342 DDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 401
+ + IR + AA + E LL+A+V ++ S + D I + +Y
Sbjct: 115 --------GDYLVFIRALYAALKKEGKLLTAAV---SSWNGGAVSDSTLAYFDFINIMSY 163
Query: 402 DFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSW 459
D P +S+ V N + W KLVLG+P +G +
Sbjct: 164 DATGPWWGDNPGQHSSYDDAV---------NDLNYWNERGLASKDKLVLGLPFYGYGF 212
Score = 41.3 bits (97), Expect = 7e-04
Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 49/194 (25%)
Query: 48 LSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVG 107
S TH+ FA +G + + EL++ N N+ I++S+
Sbjct: 20 FSKLTHINLAFANPDANGTLNANPVRSELNSVVNAAH------------AHNVKILISLA 67
Query: 108 GFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 167
G ++ L+DP RK+ ++ + + Y +G+D+ E P VT
Sbjct: 68 G----GSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTF--------- 114
Query: 168 IWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPS 227
+ + IR + AA + E LL+A+V ++ S
Sbjct: 115 ---------------------GDYLVFIRALYAALKKEGKLLTAAV---SSWNGGAVSDS 150
Query: 228 ITQHLDMITLHAYD 241
+ D I + +YD
Sbjct: 151 TLAYFDFINIMSYD 164
>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function
prediction only].
Length = 423
Score = 40.5 bits (95), Expect = 0.002
Identities = 55/305 (18%), Positives = 96/305 (31%), Gaps = 87/305 (28%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 342
L++ + I + L G+ G++ I GP D
Sbjct: 186 LNNETAKNRLINNIITLLDARGYRGVN-----------------------IDFENVGPGD 222
Query: 343 DNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVN-------YTVYFDVPSITQHLDM 395
RE +T +R+++ A + + +S +V + + Y D ++ + D
Sbjct: 223 ------RELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSWHGAY-DYVALGKIADF 275
Query: 396 ITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVE---LQKLVLGI 452
+ L YD+ YS + VR IE+ + +K+++GI
Sbjct: 276 VILMTYDWH----------YSGGPPGPVASIGW------VRKVIEYALTVIPAEKVMMGI 319
Query: 453 PTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSL 512
P +G W L A + + I N +
Sbjct: 320 PLYGYDWTLPYDPLGYLA----------------------RAISPDEAIDIANRYNATI- 356
Query: 513 LRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572
Q D + F DK+ + V FE+ + K K GL GV+ L
Sbjct: 357 ---QYDATSQSPF--FYYVDKEGRYH---EVWFEDARSFQTKLDLIKEYGLRGVSYWVLG 408
Query: 573 LDDFR 577
+D R
Sbjct: 409 QEDPR 413
>gnl|CDD|119357 cd02878, GH18_zymocin_alpha, Zymocin, alpha subunit. Zymocin is a
heterotrimeric enzyme that inhibits yeast cell cycle
progression. The zymocin alpha subunit has a chitinase
activity that is essential for holoenzyme action from
the cell exterior while the gamma subunit contains the
intracellular toxin responsible for G1 phase cell cycle
arrest. The zymocin alpha and beta subunits are thought
to act from the cell's exterior by docking to the cell
wall-associated chitin, thus mediating gamma-toxin
translocation. The alpha subunit has an eight-stranded
TIM barrel fold similar to that of family 18 glycosyl
hydrolases such as hevamine, chitolectin, and
chitobiase.
Length = 345
Score = 39.6 bits (93), Expect = 0.003
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 52 THLVYGFAGISDSGDYHIKSLDKELDTDKNKGK-ELFKQITALKTFQPNLNIMLSVGG-- 108
TH+ + FA I+ D +D + + FK++ +K +LS GG
Sbjct: 29 THIHFAFANITS---------DFSVDVSSVQEQFSDFKKLKGVKK-------ILSFGGWD 72
Query: 109 FEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
F + P R +F V + KY +G+D WE+P
Sbjct: 73 FSTSPSTYQIFRDAVKPANRDTFANNVVNFVNKYNLDGVDFDWEYP 118
Score = 31.9 bits (73), Expect = 0.90
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFP 315
P R +F V + KY +G+D WE+P
Sbjct: 89 PANRDTFANNVVNFVNKYNLDGVDFDWEYP 118
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD).
ChiD, a chitinase found in Bacillus circulans,
hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine
in chitin and chitodextrins. The domain architecture of
ChiD includes a catalytic glycosyl hydrolase family 18
(GH18) domain, a chitin-binding domain, and a
fibronectin type III domain. The chitin-binding and
fibronectin type III domains are located either
N-terminal or C-terminal to the catalytic domain. This
family includes exochitinase Chi36 from Bacillus cereus.
Length = 312
Score = 35.4 bits (82), Expect = 0.069
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 84 KELFK-QITALKTFQPNLNIMLSVGGFEDDDDKEKYLEV-LDDPKYRKSFIETTVAALKK 141
FK I AL+ +++S+GG V L+ +F+++ VA +K+
Sbjct: 59 PAEFKADIKALQ--AKGKKVLISIGG--------ANGHVDLNHTAQEDNFVDSIVAIIKE 108
Query: 142 YGFNGLDLAWE 152
YGF+GLD+ E
Sbjct: 109 YGFDGLDIDLE 119
Score = 34.2 bits (79), Expect = 0.14
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWE 313
L+ +F+++ VA +K+YGF+GLD+ E
Sbjct: 89 LNHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119
>gnl|CDD|225996 COG3465, COG3465, Uncharacterized conserved protein [Function
unknown].
Length = 171
Score = 31.4 bits (71), Expect = 0.71
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 ELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIET 134
E D D K E+ + + K F +L+ +L ED++++EK + Y +I
Sbjct: 102 ESDKDALKL-EIAATLKSSKRFNEDLSKLLYFKILEDEEEEEKNGTLKRKQVYTNEYIYE 160
Query: 135 TVAALKKYG 143
T+ LKK
Sbjct: 161 TLTFLKKLK 169
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 30.3 bits (69), Expect = 0.84
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 69 IKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYR 128
++ L +++ + + KE+ + L+ + + +G DKE+ E L++ R
Sbjct: 14 LQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDKEEVKEELEE---R 70
Query: 129 KSFIETTVAALKK 141
K +E + L+K
Sbjct: 71 KETLEKEIKTLEK 83
>gnl|CDD|119355 cd02876, GH18_SI-CLP, Stabilin-1 interacting chitinase-like protein
(SI-CLP) is a eukaryotic chitinase-like protein of
unknown function that interacts with the
endocytic/sorting transmembrane receptor stabilin-1 and
is secreted from the lysosome. SI-CLP has a glycosyl
hydrolase family 18 (GH18) domain but lacks a
chitin-binding domain. The catalytic amino acids of the
GH18 domain are not conserved in SI-CLP, similar to the
chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is
sorted to late endosomes and secretory lysosomes in
alternatively activated macrophages.
Length = 318
Score = 31.5 bits (72), Expect = 1.3
Identities = 28/143 (19%), Positives = 42/143 (29%), Gaps = 50/143 (34%)
Query: 282 FLDDPKYRKSFIETTVAALKKYGFNGLDL----AWEFPVVTEK-HESY----TLGSIWHK 332
L+D + R+ I+ V KK F+G+ L V +K E LG H
Sbjct: 86 LLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHS 145
Query: 333 IKKTV-------TGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFD 385
+ + N R+ F L
Sbjct: 146 ANLKLILVIPPPREKGNQNGLFTRKDFEKL------------------------------ 175
Query: 386 VPSITQHLDMITLHAYDFRTPQR 408
H+D +L YD+ +PQR
Sbjct: 176 ----APHVDGFSLMTYDYSSPQR 194
Score = 30.7 bits (70), Expect = 2.3
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 118 YLEVLDDPKYRKSFIETTVAALKKYGFNGLDL----AWEFPVVTEK-HESY----TLGSI 168
+L+D + R+ I+ V KK F+G+ L V +K E LG
Sbjct: 83 LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGET 142
Query: 169 WHKIKKTV-------TGPKDDNPTLHREHFTLL 194
H + + N R+ F L
Sbjct: 143 LHSANLKLILVIPPPREKGNQNGLFTRKDFEKL 175
>gnl|CDD|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase. This protein,
dihydroxy-acid dehydratase, catalyzes the fourth step in
valine and isoleucine biosynthesis. It contains a
catalytically essential [4Fe-4S] cluster This model
generates scores of up to 150 bits vs.
6-phosphogluconate dehydratase, a homologous enzyme
[Amino acid biosynthesis, Pyruvate family].
Length = 535
Score = 31.2 bits (71), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 530 LADKKLKQEYGTWVSFEEPETAGYKASYAKLAG---LGGV 566
++D++L + +W + E GY A YAKL G V
Sbjct: 494 VSDEELAERRASWKAPEPRYVKGYLAKYAKLVSSADEGAV 533
>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in
Rabphilin and Double C2 domain. Rabphilin is found
neurons and in neuroendrocrine cells, while Doc2 is
found not only in the brain but in tissues, including
mast cells, chromaffin cells, and osteoblasts.
Rabphilin and Doc2s share highly homologous tandem C2
domains, although their N-terminal structures are
completely different: rabphilin contains an N-terminal
Rab-binding domain (RBD),7 whereas Doc2 contains an
N-terminal Munc13-1-interacting domain (MID). C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the first C2
repeat, C2A, and has a type-I topology.
Length = 123
Score = 29.6 bits (67), Expect = 2.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 91 TALKTFQPNLNIMLSVGGFEDDDDKEK--YLEVLDDPKYRKSFIETTVAALKK 141
T KT P N L+ G ++D + K L VLD+ ++ F+ T LKK
Sbjct: 58 TVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKK 110
>gnl|CDD|131338 TIGR02285, TIGR02285, conserved hypothetical protein. Members of
this family are found in several Proteobacteria,
including Pseudomonas putida KT2440, Bdellovibrio
bacteriovorus HD100 (three members), Aeromonas
hydrophila, and Chromobacterium violaceum ATCC 12472.
The function is unknown [Hypothetical proteins,
Conserved].
Length = 268
Score = 30.1 bits (68), Expect = 3.1
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 404 RTPQRNPKEADYSAPLH--FVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLL 461
RTP+R K +S P G V + A VR + V+L+KL+ R ++
Sbjct: 86 RTPERE-KFLIFSDPTLRALPVGLVLRKELTAGVRDEQDGDVDLKKLLASKKK--RLGVI 142
Query: 462 EESSHKSGIPPLVADGAGEKGT 483
S+ I +++D + T
Sbjct: 143 ASRSYGQQIDDILSDSGYQHNT 164
>gnl|CDD|143197 cd05720, Ig_CD8_alpha, Immunoglobulin (Ig) like domain of CD8 alpha
chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in
CD8 alpha. The CD8 glycoprotein plays an essential role
in the control of T-cell selection, maturation and the
T-cell receptor (TCR)-mediated response to peptide
antigen. CD8 is comprised of alpha and beta subunits and
is expressed as either an alphaalpha or alphabeta dimer.
Both dimeric isoforms can serve as a coreceptor for T
cell activation and differentiation, however they have
distinct physiological roles, different cellular
distributions, unique binding partners etc. Each CD8
subunit is comprised of an extracellular domain
containing a v-type Ig-like domain, a single pass
transmembrane portion and a short intracellular domain.
The Ig domain of CD8 alpha binds to antibodies.
Length = 104
Score = 28.6 bits (64), Expect = 3.2
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 443 VELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLS 492
VEL+ VL G SWL + + P + +G EE L S
Sbjct: 9 VELKCEVLNSSPTGCSWLFQP-PGSAPQPTFLVYLSGSSKITWDEEELSS 57
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import
[Posttranslational modification, protein turnover,
chaperones].
Length = 970
Score = 30.6 bits (69), Expect = 3.3
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 81 NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIE 133
N G+ L +T+L F + D +Y E +D ++FI
Sbjct: 863 NLGEVLVALVTSLPEAIRLRAKEKDDEDFPEPDLTTEYDECVDASDISETFIL 915
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 29.7 bits (67), Expect = 3.7
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 3 FKRKDLSKDTRMEDHLSKDQYHIHSNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGIS 62
+ DL D ME +I + SS G +EL AL + G +G+
Sbjct: 74 LNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD-GLKELIEALQNRISVFAGQSGVG 132
Query: 63 DS 64
S
Sbjct: 133 KS 134
>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 29.8 bits (67), Expect = 4.9
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 456 GRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRK 515
GR W + + + G+ KG I +E+ + + I N+Q +L R
Sbjct: 303 GRWWWEDAKAKECGL---------HKGNIKEEDNGAANDNGNAAVADIFNSQNVVALSRA 353
Query: 516 QEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLG 564
+ +L + L Y W F + A Y+ KLAG G
Sbjct: 354 GIENLLKLENRK----EPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG 398
>gnl|CDD|119359 cd06542, GH18_EndoS-like, Endo-beta-N-acetylglucosaminidases are
bacterial chitinases that hydrolyze the chitin core of
various asparagine (N)-linked glycans and glycoproteins.
The endo-beta-N-acetylglucosaminidases have a glycosyl
hydrolase family 18 (GH18) catalytic domain. Some
members also have an additional C-terminal glycosyl
hydrolase family 20 (GH20) domain while others have an
N-terminal domain of unknown function (pfam08522).
Members of this family include
endo-beta-N-acetylglucosaminidase S (EndoS) from
Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and
EndoH from Flavobacterium meningosepticum, and EndoE
from Enterococcus faecalis. EndoS is a secreted
endoglycosidase from Streptococcus pyogenes that
specifically hydrolyzes the glycan on human IgG between
two core N-acetylglucosamine residues. EndoE is a
secreted endoglycosidase, encoded by the ndoE gene in
Enterococcus faecalis, that hydrolyzes the glycan on
human RNase B.
Length = 255
Score = 28.9 bits (65), Expect = 7.2
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 28/131 (21%)
Query: 297 VAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLI 356
V + KYG +G+D E + Y K+ E F LI
Sbjct: 97 VDTVDKYGLDGVDFDDE-------YSGY---------------GKNGTSQPSNEAFVRLI 134
Query: 357 REMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY---DFRTPQRNPKEA 413
+E++ + LL+ + D ++ ++D + Y T + +
Sbjct: 135 KELRKYMGPTDKLLTIDGYGQ---ALSNDGEEVSPYVDYVIYQYYGSSSSSTQRNWNTNS 191
Query: 414 DYSAPLHFVYG 424
P VY
Sbjct: 192 PKIPPEKMVYT 202
Score = 28.5 bits (64), Expect = 9.2
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 22/74 (29%)
Query: 136 VAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLI 195
V + KYG +G+D E + Y K+ E F LI
Sbjct: 97 VDTVDKYGLDGVDFDDE-------YSGY---------------GKNGTSQPSNEAFVRLI 134
Query: 196 REMKAAFRAENFLL 209
+E++ + LL
Sbjct: 135 KELRKYMGPTDKLL 148
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Y4yA. This subfamily is composed
of the hypothetical Rhizobium sp. protein Y4yA and
similar uncharacterized bacterial proteins. These
proteins are homologous to eukaryotic ornithine
decarboxylase (ODC) and diaminopimelate decarboxylase
(DapDC). ODC and DapDC are fold type III PLP-dependent
enzymes that contain an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain,
similar to bacterial alanine racemases. ODC participates
in the formation of putrescine by catalyzing the
decarboxylation of ornithine, the first step in
polyamine biosynthesis. DapDC participates in the last
step of lysine biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Proteins in
this subfamily may function as PLP-dependent
decarboxylases.
Length = 423
Score = 28.8 bits (65), Expect = 8.8
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 413 ADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQ 446
Y +PL+ ++ + +N A+ HGV+ +
Sbjct: 6 EAYGSPLNVLFPQTFRENIAALRAVLDRHGVDGR 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,355,337
Number of extensions: 3138665
Number of successful extensions: 2800
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2740
Number of HSP's successfully gapped: 61
Length of query: 596
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 494
Effective length of database: 6,413,494
Effective search space: 3168266036
Effective search space used: 3168266036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)