RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11626
(596 letters)
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 289 bits (740), Expect = 4e-92
Identities = 131/312 (41%), Positives = 194/312 (62%), Gaps = 10/312 (3%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTG--PKDDNPT 346
+ FI + +K YGF+GLDLA++FP + LG W IKK TG D +
Sbjct: 108 QIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAA 167
Query: 347 LHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTP 406
LH+E FT L+R++K + RA+ FLLS +VLP+VN T YFD+P++ +D + L +DF TP
Sbjct: 168 LHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTP 227
Query: 407 QRNPKEADYSAPL---HFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEE 463
RNP+EADYSAP+ R+ H NA+ V +++ G K+ LG+ T+G +W L +
Sbjct: 228 ARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTK 287
Query: 464 SSHKSGIPPL-VADGAGEKGTITKEEGLLSYAEICPQLVSITNA--QASPSLLRKQEDPQ 520
S G+P + G +G +++ GLLSYAEIC +L + N + + S LR+ DP
Sbjct: 288 DSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPT 347
Query: 521 RRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRGMC 580
+R G A+R D ++ + G WVS+++P++A KA+YA++ LGGVA+ DLS DDFRG C
Sbjct: 348 KRFGGIAYRPVDGQITE--GIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQC 405
Query: 581 NSNKFPILRAAR 592
+ +K+PILRA +
Sbjct: 406 SGDKYPILRAIK 417
Score = 208 bits (530), Expect = 3e-61
Identities = 102/287 (35%), Positives = 149/287 (51%), Gaps = 39/287 (13%)
Query: 30 YFIS-----SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGK 84
Y+ S G K+ +L+ AL C+HLVYG+AG+ S+++ LD K+
Sbjct: 7 YYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGEN-LQAYSMNENLDIYKH--- 62
Query: 85 ELFKQITALKTFQPNLNIMLSVGG--FEDDDDKEKYLEVLDDPKYRKS-FIETTVAALKK 141
F ++T+LK P+L ++LSVGG D D KY+++L+ K R+ FI + +K
Sbjct: 63 -QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKT 121
Query: 142 YGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTG--PKDDNPTLHREHFTLLIREMK 199
YGF+GLDLA++FP + LG W IKK TG D + LH+E FT L+R++K
Sbjct: 122 YGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVK 181
Query: 200 AAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITL 259
+ RA+ FLLS +VLP+VN T YFD+P++ +D + L
Sbjct: 182 DSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNL------------------A--- 220
Query: 260 HAYDFRTPQRNPKEADYSAPLHFLD-DPKYRKSF-IETTVAALKKYG 304
+DF TP RNP+EADYSAP++ D + V G
Sbjct: 221 -TFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQG 266
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 238 bits (609), Expect = 2e-73
Identities = 82/320 (25%), Positives = 133/320 (41%), Gaps = 64/320 (20%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
R FI + + L+ + F+GLD++W +P K+
Sbjct: 92 SSTSRLEFINSIILFLRNHNFDGLDVSWIYP-----------------------DQKE-- 126
Query: 345 PTLHREHFTLLIREMKAAFRAE-------NFLLSASVLP-HVNYTVYFDVPSITQHLDMI 396
HFT+LI E+ AF+ + LL+A V + V + + LD I
Sbjct: 127 ----NTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFI 182
Query: 397 TLHAYDFRTPQRNPKEADYSAPLH---FVYGRVPHQNANAMVRWFIEHGVELQKLVLGIP 453
L ++DF P +++PL G + N V ++I G+ +K+V+GIP
Sbjct: 183 NLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIP 242
Query: 454 TFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLL 513
T+G S+ L + G P A G G G IT+ G L+Y EIC L +
Sbjct: 243 TYGHSFTLASAETTVGAP---ASGPGAAGPITESSGFLAYYEICQFLKGAK--------I 291
Query: 514 RKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSL 573
+ +D Q YA + WV +++ ++ K + K LGG I + +
Sbjct: 292 TRLQDQQ---VPYAVKG---------NQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDM 339
Query: 574 DDFRGM-CNSNKFPILRAAR 592
DDF G CN +P+++A +
Sbjct: 340 DDFTGKSCNQGPYPLVQAVK 359
Score = 161 bits (410), Expect = 1e-44
Identities = 64/289 (22%), Positives = 105/289 (36%), Gaps = 78/289 (26%)
Query: 30 YFIS-----SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGK 84
YF + K PE + P L C+HL+Y FA I ++ ++
Sbjct: 7 YFTNWSQDRQEPGKFTPENIDPFL--CSHLIYSFASIENN----------KVIIKDKSEV 54
Query: 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGF 144
L++ I +LKT P L I+LS+GG + + ++D R FI + + L+ + F
Sbjct: 55 MLYQTINSLKTKNPKLKILLSIGG--YLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNF 112
Query: 145 NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA 204
+GLD++W +P K+ HFT+LI E+ AF+
Sbjct: 113 DGLDVSWIYP-----------------------DQKE------NTHFTVLIHELAEAFQK 143
Query: 205 E-------NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMI 257
+ LL+A V + V + + LD I
Sbjct: 144 DFTKSTKERLLLTAGVSAGRQMI---------------------DNSYQVEKLAKDLDFI 182
Query: 258 TLHAYDFRTPQRNPKEADYSAPLHFL-DDPKYRKSF-IETTVAALKKYG 304
L ++DF P +++PL D + +E V G
Sbjct: 183 NLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKG 231
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 220 bits (562), Expect = 2e-66
Identities = 99/319 (31%), Positives = 141/319 (44%), Gaps = 65/319 (20%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
+ R++FI++ L+ +GF+GLDLAW +P G +D
Sbjct: 91 KTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-----------------------GRRD-- 125
Query: 345 PTLHREHFTLLIREMKAAFRAE------NFLLSASVLP-HVNYTVYFDVPSITQHLDMIT 397
+ H T L++EMKA F E LLSA+V + +D+ I++HLD I+
Sbjct: 126 ----KRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFIS 181
Query: 398 LHAYDFRTPQRNPKEADYSAPLHF--VYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTF 455
L YDF R + +PL NA+ V + + G KLV+GIPTF
Sbjct: 182 LLTYDFHGAWRQ--TVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTF 239
Query: 456 GRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRK 515
GRS+ L S G P G G G TKE+G+L+Y EIC L A+ R
Sbjct: 240 GRSFTLASSKTDVGAP---VSGPGIPGRFTKEKGILAYYEICDFL-----HGATTHRFRD 291
Query: 516 QEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDD 575
Q+ P YA + WV++++ E+ KA Y K L G + L LDD
Sbjct: 292 QQVP------YATKG---------NQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
Query: 576 FRGMC--NSNKFPILRAAR 592
FRG + FP+ A +
Sbjct: 337 FRGTFCGQNLTFPLTSAVK 355
Score = 154 bits (391), Expect = 4e-42
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 55/225 (24%)
Query: 30 YFIS-----SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGK 84
Y+ S G P+ + P L CTH++Y FA IS++ +DT +
Sbjct: 6 YYTSWSQYREGDGSCFPDAIDPFL--CTHVIYTFANISNNE----------IDTWEWNDV 53
Query: 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGF 144
L+ + LK P L +LSVGG + E++ ++ + R++FI++ L+ +GF
Sbjct: 54 TLYDTLNTLKNRNPKLKTLLSVGG--WNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGF 111
Query: 145 NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA 204
+GLDLAW +P G +D + H T L++EMKA F
Sbjct: 112 DGLDLAWLYP-----------------------GRRD------KRHLTTLVKEMKAEFIR 142
Query: 205 E------NFLLSASVLP-HVNYTVYFDVPSITQHLDMITLHAYDF 242
E LLSA+V + +D+ I++HLD I+L YDF
Sbjct: 143 EAQAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF 187
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 218 bits (557), Expect = 1e-65
Identities = 77/321 (23%), Positives = 142/321 (44%), Gaps = 61/321 (19%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
P+ R+ FI++ + L++Y F+GL+L W++P + P D
Sbjct: 91 TPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPG-------------------SRGSPPKD- 130
Query: 345 PTLHREHFTLLIREMKAAFRAEN-------FLLSASVLP-HVNYTVYFDVPSITQHLDMI 396
+ F++L++EM+ AF E+ LL+++ + +P ++Q LD I
Sbjct: 131 ----KHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYI 186
Query: 397 TLHAYDFRTPQRNPKEADYSAPLH---FVYGRVPHQNANAMVRWFIEHGVELQKLVLGIP 453
+ YD P+ ++PL+ + G+ N ++++ ++ +HG +KL++G P
Sbjct: 187 QVMTYDLHDPKDGY--TGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFP 244
Query: 454 TFGRSWLLEESS-HKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSL 512
+G +++L + S G P G G T E GLL+Y E+C + N A+
Sbjct: 245 AYGHTFILSDPSKTGIGAP---TISTGPPGKYTDESGLLAYYEVC----TFLNEGAT--- 294
Query: 513 LRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572
+ D + YA++ WV ++ + KA + K LGG + L
Sbjct: 295 --EVWDAPQE-VPYAYQG---------NEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLD 342
Query: 573 LDDFRG-MCNSNKFPILRAAR 592
+DDF G C+ FP+ +
Sbjct: 343 MDDFSGSFCHQRHFPLTSTLK 363
Score = 156 bits (397), Expect = 1e-42
Identities = 56/289 (19%), Positives = 112/289 (38%), Gaps = 75/289 (25%)
Query: 30 YFIS-----SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGK 84
Y+ S P + P L CTHL+Y FAG+ ++ E+ +
Sbjct: 6 YYTSWAKDRPIEGSFKPGNIDPCL--CTHLIYAFAGMQNN----------EITYTHEQDL 53
Query: 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGF 144
++ + LK L +L++GG + ++ P+ R+ FI++ + L++Y F
Sbjct: 54 RDYEALNGLKDKNTELKTLLAIGG--WKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNF 111
Query: 145 NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA 204
+GL+L W++P + P D + F++L++EM+ AF
Sbjct: 112 DGLNLDWQYPG-------------------SRGSPPKD-----KHLFSVLVKEMRKAFEE 147
Query: 205 EN-------FLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMI 257
E+ LL+++ ++ + +P ++Q LD I
Sbjct: 148 ESVEKDIPRLLLTSTGAGIIDVI---------------------KSGYKIPELSQSLDYI 186
Query: 258 TLHAYDFRTPQRNPKEADYSAPLHF-LDDPKYRKSF-IETTVAALKKYG 304
+ YD P+ ++PL+ D +++ ++ K +G
Sbjct: 187 QVMTYDLHDPKDGY--TGENSPLYKSPYDIGKSADLNVDSIISYWKDHG 233
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 215 bits (549), Expect = 9e-64
Identities = 98/321 (30%), Positives = 149/321 (46%), Gaps = 63/321 (19%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
R++F+ + + L+KY F+GLDL WE+P + P D
Sbjct: 91 TANNRQTFVNSAIRFLRKYSFDGLDLDWEYPG-------------------SQGSPAVD- 130
Query: 345 PTLHREHFTLLIREMKAAFRAE-------NFLLSASV-LPHVNYTVYFDVPSITQHLDMI 396
+E FT L++++ AF+ E LLSA+V ++V I Q+LD +
Sbjct: 131 ----KERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFV 186
Query: 397 TLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQ---NANAMVRWFIEHGVELQKLVLGIP 453
L AYDF K +++PL+ N +A V+ +++ G KL+LG+P
Sbjct: 187 NLMAYDFHGSWE--KVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 454 TFGRSWLLEESS-HKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSL 512
T+GRS+ L SS + G P A G+G G TKE G+L+Y E+C A+
Sbjct: 245 TYGRSFTLASSSDTRVGAP---ATGSGTPGPFTKEGGMLAYYEVCSW------KGATKQR 295
Query: 513 LRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572
++ Q+ P Y FR WV F++ E+ K SY K GLGG + L
Sbjct: 296 IQDQKVP------YIFRD---------NQWVGFDDVESFKTKVSYLKQKGLGGAMVWALD 340
Query: 573 LDDFRGM-CNSNKFPILRAAR 592
LDDF G CN ++P+++ R
Sbjct: 341 LDDFAGFSCNQGRYPLIQTLR 361
Score = 156 bits (395), Expect = 6e-42
Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 75/289 (25%)
Query: 30 YFIS-----SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGK 84
YF + G A+ P++L P+L CTHL+Y FAG+++ +L T + +
Sbjct: 6 YFTNWAQYRQGEARFLPKDLDPSL--CTHLIYAFAGMTN----------HQLSTTEWNDE 53
Query: 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGF 144
L+++ LK P L +L++GG+ +K+ +++ R++F+ + + L+KY F
Sbjct: 54 TLYQEFNGLKKMNPKLKTLLAIGGWNFGT--QKFTDMVATANNRQTFVNSAIRFLRKYSF 111
Query: 145 NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA 204
+GLDL WE+P + P D +E FT L++++ AF+
Sbjct: 112 DGLDLDWEYPG-------------------SQGSPAVD-----KERFTTLVQDLANAFQQ 147
Query: 205 E-------NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMI 257
E LLSA+ VP+ ++D ++V I Q+LD +
Sbjct: 148 EAQTSGKERLLLSAA------------VPAGQTYVD---------AGYEVDKIAQNLDFV 186
Query: 258 TLHAYDFRTPQRNPKEADYSAPLHFL-DDPKYRKSF-IETTVAALKKYG 304
L AYDF K +++PL+ ++ S ++ V + G
Sbjct: 187 NLMAYDFHGSWE--KVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKG 233
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 205 bits (523), Expect = 2e-60
Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 61/321 (19%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
P+ R++FI + + L++Y F+GLD WE+P + P D
Sbjct: 91 TPENRQTFITSVIKFLRQYEFDGLDFDWEYP-------------------GSRGSPPQD- 130
Query: 345 PTLHREHFTLLIREMKAAFRAE-------NFLLSASVLPHV-NYTVYFDVPSITQHLDMI 396
+ FT+L++EM+ AF E +++A+V + N +++P ++Q+LD I
Sbjct: 131 ----KHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYI 186
Query: 397 TLHAYDFRTPQRNPKEADYSAPLH---FVYGRVPHQNANAMVRWFIEHGVELQKLVLGIP 453
+ YD ++PL+ G + N + ++ ++ ++G +KL++G P
Sbjct: 187 HVMTYDLHGSWEGY--TGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFP 244
Query: 454 TFGRSWLLEESS-HKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSL 512
T+G +++L S G P GAG G KE G+ +Y EIC L + A
Sbjct: 245 TYGHNFILSNPSNTGIGAP---TSGAGPAGPYAKESGIWAYYEICTFLKN--GAT----- 294
Query: 513 LRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLS 572
+ D + YA++ WV ++ ++ KA + K GG + +
Sbjct: 295 --QGWDAPQE-VPYAYQG---------NVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAID 342
Query: 573 LDDFRG-MCNSNKFPILRAAR 592
LDDF G CN KFP++ +
Sbjct: 343 LDDFTGTFCNQGKFPLISTLK 363
Score = 144 bits (365), Expect = 3e-38
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 51/226 (22%)
Query: 30 YFIS-----SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGK 84
YF + G + P+++ P L CTHL+Y FAG+ ++ E+ T +
Sbjct: 6 YFTNWAQYRPGLGRFMPDDINPCL--CTHLIYAFAGMQNN----------EITTIEWNDV 53
Query: 85 ELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGF 144
L++ LK L +L++GG + + ++ P+ R++FI + + L++Y F
Sbjct: 54 TLYQAFNGLKNKNSQLKTLLAIGG--WNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEF 111
Query: 145 NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA 204
+GLD WE+P + P D + FT+L++EM+ AF
Sbjct: 112 DGLDFDWEYP-------------------GSRGSPPQD-----KHLFTVLVQEMREAFEQ 147
Query: 205 E-------NFLLSASVLPHV-NYTVYFDVPSITQHLDMITLHAYDF 242
E +++A+V + N +++P ++Q+LD I + YD
Sbjct: 148 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDL 193
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 190 bits (484), Expect = 2e-55
Identities = 80/308 (25%), Positives = 129/308 (41%), Gaps = 65/308 (21%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
P RKSFI++++ ++ GF+GLDL WE+P+ D
Sbjct: 88 QPNSRKSFIDSSIRLARQLGFHGLDLDWEYPL----------------------SAAD-- 123
Query: 345 PTLHREHFTLLIREMKAAFRAE-------NFLLSASV--LPHVNYTVYFDVPSITQHLDM 395
+ L+ E + A E LL+A+V P VN Y V S+ ++LD
Sbjct: 124 ----MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNY-PVESLARNLDW 178
Query: 396 ITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTF 455
I L AYDF P +P + + A L + V H + + + +I+ GV +KLVLGIP +
Sbjct: 179 INLMAYDFYGPNWSPSQTNSHAQL---FDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFY 235
Query: 456 GRSWLLEESS-HKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLR 514
G +W L ++ H P A G G ++G ++Y I +V + A
Sbjct: 236 GYAWRLVNANIHGLRAP---AAGKSNVGA--VDDGSMTYNRIRDYIVE-SRAT------- 282
Query: 515 KQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLD 574
+ G Y + W+S+++ +T K +Y K GL G ++ D
Sbjct: 283 TVYNATIV-GDYCY---SGS------NWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Query: 575 DFRGMCNS 582
G+ +
Sbjct: 333 QNWGLSRT 340
Score = 134 bits (340), Expect = 4e-35
Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 50/217 (23%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALK 94
+ + + L THL FA ++ + + D+ + + + ++
Sbjct: 11 KDSGLALNNIDSTL--FTHLFCAFADLNPQL-NQLIISPENQDSFR-------QFTSTVQ 60
Query: 95 TFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFP 154
P++ LS+ G + Y + P RKSFI++++ ++ GF+GLDL WE+P
Sbjct: 61 RKNPSVKTFLSIAG--GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYP 118
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE-------NF 207
+ D + L+ E + A E
Sbjct: 119 L----------------------SAAD------MTNLGTLLNEWRTAINTEARNSGRAAL 150
Query: 208 LLSASV--LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LL+A+V P VN Y V S+ ++LD I L AYDF
Sbjct: 151 LLTAAVSNSPRVNGLNY-PVESLARNLDWINLMAYDF 186
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 184 bits (468), Expect = 5e-53
Identities = 75/318 (23%), Positives = 122/318 (38%), Gaps = 66/318 (20%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
+P RKSFI++++ + YGF+GLDL WE+P +
Sbjct: 89 NPTSRKSFIDSSIRVARSYGFHGLDLDWEYP-----------------------SSATE- 124
Query: 345 PTLHREHFTLLIREMKAAFRAE-------NFLLSASVLP-HVNYTVYFDVPSITQHLDMI 396
+F L+RE ++A AE LL+A+V + Y+V + V ++ LD +
Sbjct: 125 ----MTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWV 180
Query: 397 TLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFG 456
L AYDF P + A L + +A R +I+ G+ +K VLG P +G
Sbjct: 181 NLMAYDFYGPGWSRV-TGPPAALF--DPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYG 237
Query: 457 RSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQ 516
+W L ++ S A G +G + Y +I +V A
Sbjct: 238 YAWRLTNANSHS-------YYAPTTGAAISPDGSIGYGQIRKFIVD-NGAT-------TV 282
Query: 517 EDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+ G Y + W+ +++ ++ K YAK GL G + DD
Sbjct: 283 YNSTVV-GDYCY---AGT------NWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDN 332
Query: 577 RGMCN--SNKFPILRAAR 592
G+ S + A
Sbjct: 333 SGLSRAASQAWDATTATT 350
Score = 135 bits (342), Expect = 2e-35
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 48/217 (22%)
Query: 34 SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITAL 93
++ ++ +L THL FA ++ + ++ + +
Sbjct: 11 FPASEFPVTDIDSSL--FTHLFCAFADLNSQTN--------QVTVSSANQPKFSTFTQTV 60
Query: 94 KTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEF 153
+ P++ +LS+GG DK Y + +P RKSFI++++ + YGF+GLDL WE+
Sbjct: 61 QRRNPSVKTLLSIGG--GIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEY 118
Query: 154 PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE-------N 206
P + +F L+RE ++A AE
Sbjct: 119 P-----------------------SSATE-----MTNFGTLLREWRSAVVAEASSSGKPR 150
Query: 207 FLLSASVLP-HVNYTVYFDVPSITQHLDMITLHAYDF 242
LL+A+V + Y+V + V ++ LD + L AYDF
Sbjct: 151 LLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDF 187
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 174 bits (443), Expect = 8e-49
Identities = 58/312 (18%), Positives = 113/312 (36%), Gaps = 44/312 (14%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
+ R FI + +++YG +G+DL WEFPV V D
Sbjct: 128 TAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVNGAW--------------GLVASQPAD- 172
Query: 345 PTLHREHFTLLIREMKAAFRAENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 403
R++FT L++ ++ A E L++ +V + + DV ++ L+ I L YD
Sbjct: 173 ----RDNFTALLKSLREAVG-EQKLVTIAVGANAESPKSWVDVKAVAPVLNYINLMTYDM 227
Query: 404 RTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSW---- 459
+ Y + +A+ +V ++ G++ ++ LGI +GR
Sbjct: 228 AYGTQYFNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPSQMNLGIGFYGRVPKRAV 287
Query: 460 -------LLEESSHKSGIP---PLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQAS 509
+ ++ P P G ++ + Y +I +L++ + +
Sbjct: 288 EPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYNDIVGKLLNDPQKRFT 347
Query: 510 PSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAII 569
+ + P + + + +S+E P + KA Y K GL G
Sbjct: 348 EHWDDEAKVP------WLSVQSAEGKPLF---ALSYENPRSVAIKADYIKAKGLAGAMFW 398
Query: 570 DLSLDDFRGMCN 581
+ DD +
Sbjct: 399 EYGADDQNQLAR 410
Score = 137 bits (346), Expect = 2e-35
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 36/223 (16%)
Query: 30 YFISSGTAKVG----PEELKPALSMCTHLVYGFAGISDSG----DYHIKSLDKELDT-DK 80
YF G G ++L THL Y F I + + +K +
Sbjct: 31 YFNGGGDVTAGPGGDIDKLDVRQ--ITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLS 88
Query: 81 NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALK 140
K + +++ AL+ P+L ++LSVGG+ + + R FI + ++
Sbjct: 89 PKVQADLQKLPALRKQNPDLKVLLSVGGWGA----RGFSGAAATAESRAVFIRSAQKIIQ 144
Query: 141 KYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKA 200
+YG +G+DL WEFPV V D R++FT L++ ++
Sbjct: 145 QYGLDGIDLDWEFPVNGAW--------------GLVASQPAD-----RDNFTALLKSLRE 185
Query: 201 AFRAENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
A E L++ +V + + DV ++ L+ I L YD
Sbjct: 186 AVG-EQKLVTIAVGANAESPKSWVDVKAVAPVLNYINLMTYDM 227
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 161 bits (410), Expect = 4e-44
Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 54/320 (16%)
Query: 276 YSAPLH-FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIK 334
+S R+ F + V L+KY F+G+DL WE+PV +
Sbjct: 134 WSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGN----------- 182
Query: 335 KTVTGPKDDNPTLHREHFTLLIREMKAAFRAE------NFLLSASVLPHVNYTVYFDVPS 388
P+D ++++TLL+ +++ A +LL+ + Y ++
Sbjct: 183 --SKRPED------KQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANTELAK 234
Query: 389 ITQHLDMITLHAYDFRTPQRNPKEADYSAPLHF-------VYGRVPHQNANAMVRWFIEH 441
I +D I + YDF + + ++APL++ N A + ++
Sbjct: 235 IAAIVDWINIMTYDFNGAWQK--ISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDA 292
Query: 442 GVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLV 501
GV KLVLG+P +GR W + G T E G + ++ +
Sbjct: 293 GVPAAKLVLGVPFYGRGWDGCAQAG----NGQYQTCTGGSSVGTWEAGSFDFYDLEANYI 348
Query: 502 SITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLA 561
+ + + + Y + ++S+++ E+ GYK +Y K
Sbjct: 349 NKNGYT-------RYWNDTAK-VPYLY-------NASNKRFISYDDAESVGYKTAYIKSK 393
Query: 562 GLGGVAIIDLSLDDFRGMCN 581
GLGG +LS D + + N
Sbjct: 394 GLGGAMFWELSGDRNKTLQN 413
Score = 122 bits (309), Expect = 2e-30
Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 64/236 (27%)
Query: 49 SMCTHLVYGFAGISDSG----------------------------DYHIKSLDKELDTDK 80
+ TH+ Y FA I +G + I D +DT K
Sbjct: 36 TKVTHINYAFADICWNGIHGNPDPSGPNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGK 95
Query: 81 NKG--------KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFI 132
Q+ LK PNL ++SVGG+ + ++ +V R+ F
Sbjct: 96 TFAGDTWDQPIAGNINQLNKLKQTNPNLKTIISVGGWTWSN---RFSDVAATAATREVFA 152
Query: 133 ETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFT 192
+ V L+KY F+G+DL WE+PV + P+D ++++T
Sbjct: 153 NSAVDFLRKYNFDGVDLDWEYPVSGGLDGN-------------SKRPED------KQNYT 193
Query: 193 LLIREMKAAFRAE------NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
LL+ +++ A +LL+ + Y ++ I +D I + YDF
Sbjct: 194 LLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANTELAKIAAIVDWINIMTYDF 249
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 155 bits (393), Expect = 5e-41
Identities = 62/310 (20%), Positives = 109/310 (35%), Gaps = 49/310 (15%)
Query: 276 YSAPLHFLDDPKYRKSFIETTVAALKKYG-FNGLDLAWEFPVVTEKHESYTLGSIWHKIK 334
S P F+ D R F+ + L+ + F+G+D+ WEFP + +
Sbjct: 254 LSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPN----------- 302
Query: 335 KTVTGPKDDNPTLHREHFTLLIREMKAAFRAE------NFLLSASVLPHVNYTVYFDVPS 388
+ P+D E + LL++E++A + L++++ +
Sbjct: 303 --LGSPQD------GETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNV 354
Query: 389 ITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQ--NANAMVRWFIEHGVELQ 446
+D I L +YDF + K + L P V + GV+
Sbjct: 355 AQNSMDHIFLMSYDFYGAF-DLKNLGHQTAL-NAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 447 KLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNA 506
K+V+G +GR W + A G + T E G++ Y +I Q +S
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKG---TWENGIVDYRQIAGQFMS-GEW 468
Query: 507 QASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGV 566
Q D Y F K G ++F++ + K Y LGG+
Sbjct: 469 Q-------YTYDATAE-APYVF-------KPSTGDLITFDDARSVQAKGKYVLDKQLGGL 513
Query: 567 AIIDLSLDDF 576
++ D+
Sbjct: 514 FSWEIDADNG 523
Score = 114 bits (288), Expect = 3e-27
Identities = 48/242 (19%), Positives = 84/242 (34%), Gaps = 65/242 (26%)
Query: 41 PEELKPALSMCTHLVYGFAGIS------------------------DSGDYHIKSLDKEL 76
+++ THL+YGF I D+ + D
Sbjct: 153 VDKIPAQN--LTHLLYGFIPICGGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFA 210
Query: 77 DTDKN---------KGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKY 127
K K F Q+ ALK P+L I+ S+GG+ D + D
Sbjct: 211 ALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPF----FFMGDKVK 266
Query: 128 RKSFIETTVAALKKYG-FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTL 186
R F+ + L+ + F+G+D+ WEFP + + + P+D
Sbjct: 267 RDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPN-------------LGSPQD----- 308
Query: 187 HREHFTLLIREMKAAFRAE------NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY 240
E + LL++E++A + L++++ + +D I L +Y
Sbjct: 309 -GETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVAQNSMDHIFLMSY 367
Query: 241 DF 242
DF
Sbjct: 368 DF 369
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 150 bits (380), Expect = 1e-39
Identities = 57/341 (16%), Positives = 107/341 (31%), Gaps = 91/341 (26%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
P R F ++ V +K YGF+G+++ WE+P +
Sbjct: 116 TPASRAKFAQSCVRIMKDYGFDGVNIDWEYP-----------------------QAAE-- 150
Query: 345 PTLHREHFTLLIREMKAAFRAE---------NFLLSA--SVLPHVNYTVYFDVPSITQHL 393
+ F ++E++ + + L+ + Y + I L
Sbjct: 151 ----VDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 394 DMITLHAYDFR--------------TPQRNPKEADYSAPLHFVYGRVPHQNA-------- 431
D I L YD P + + + A
Sbjct: 207 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 432 --NAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAG---------- 479
A+ + + GV K+V+G+P +GR++ + G
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 480 --EKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQ 537
E+ K+ + SY ++ L Q + + + + Y +
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYGYQ-------RLWNDKTK-TPYLY-------HA 371
Query: 538 EYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRG 578
+ G +V++++ E+ YKA Y K LGGV L D+ G
Sbjct: 372 QNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
Score = 136 bits (343), Expect = 1e-34
Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 50/224 (22%)
Query: 35 GTAKVGPEELKPAL-SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITAL 93
+ PA TH+ + F I+ + + + T+ K +++ ++TAL
Sbjct: 27 SVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAW-----DPATNDAKARDVVNRLTAL 81
Query: 94 KTFQPNLNIMLSVGG----FEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDL 149
K P+L IM S+GG + Y+ + P R F ++ V +K YGF+G+++
Sbjct: 82 KAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNI 141
Query: 150 AWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE---- 205
WE+P + + F ++E++ +
Sbjct: 142 DWEYP-----------------------QAAE------VDGFIAALQEIRTLLNQQTITD 172
Query: 206 -----NFLLSA--SVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
+ L+ + Y + I LD I L YD
Sbjct: 173 GRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDL 216
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 150 bits (379), Expect = 6e-39
Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 39/303 (12%)
Query: 285 DPKYRKSFIETTVAALKKYG-FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDD 343
D R +F+E +++ F+ LD+ WE+P P D
Sbjct: 259 DEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPN--------------SPDD- 303
Query: 344 NPTLHREHFTLLIREMKAAFRAENFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAYD 402
+F +LI+++ A + +S + + + I L YD
Sbjct: 304 -----GANFAILIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLMTYD 358
Query: 403 FRTPQRNPKEADYSAPLHFVYGRVPHQNAN---AMVRWFIEHGVELQKLVLGIPTFGRSW 459
F T + + + + + A+ E V+ + + +G + R+
Sbjct: 359 FFTLGDGK--LSHHTNI-YRDPSDVYSKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRNA 415
Query: 460 -LLEESSHKSGIPPLVADGAGEKGTI-TKEEGLLSYAEICPQLVSITNAQASPSLLRKQE 517
++ L T+ + E +L + +I + + +
Sbjct: 416 KNATITTSIPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHD 475
Query: 518 DPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFR 577
+ Y + + ++S + P + K Y K GLGG+ I D+
Sbjct: 476 KVAK--ADYLY-------SEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDNGI 526
Query: 578 GMC 580
Sbjct: 527 LTN 529
Score = 124 bits (313), Expect = 3e-30
Identities = 39/218 (17%), Positives = 68/218 (31%), Gaps = 35/218 (16%)
Query: 27 SNLYFISSGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKEL 86
I++ K P + A+ + GF D ++ K K L
Sbjct: 175 DPDDAIANHKGKTIPVDPDGAV--LASINCGFTKWEAG--------DANERYNQEKAKGL 224
Query: 87 FKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG-FN 145
L L LS+GG+ + E+ D R +F+E +++ F+
Sbjct: 225 LGGFRLLHEADKELEFSLSIGGWSMSG---LFSEIAKDEILRTNFVEGIKDFFQRFPMFS 281
Query: 146 GLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE 205
LD+ WE+P P D +F +LI+++ A +
Sbjct: 282 HLDIDWEYPGSIGAGNPN--------------SPDD------GANFAILIQQITDAKISN 321
Query: 206 NFLLSASV-LPHVNYTVYFDVPSITQHLDMITLHAYDF 242
+S + + + I L YDF
Sbjct: 322 LKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDF 359
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 147 bits (373), Expect = 6e-39
Identities = 56/339 (16%), Positives = 104/339 (30%), Gaps = 85/339 (25%)
Query: 276 YSAPLH-FLDDPKYRKSFIETTVAALKKYG----------------FNGLDLAWEFPVVT 318
+S R+ + + + K F+G+D+ WE+P
Sbjct: 129 WSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTN 188
Query: 319 EKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE------NFLLSA 372
+ + D R +F L+ E + A ++LSA
Sbjct: 189 SGLAGNGVDT-----------VND------RANFKALLAEFRKQLDAYGSTNNKKYVLSA 231
Query: 373 SV------LPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHF----V 422
+ + + D P+ + LD ++ YD NP + A L+
Sbjct: 232 FLPANPADIDAGGW----DDPANFKSLDFGSIQGYDLHGAW-NPTLTGHQANLYDDPADP 286
Query: 423 YGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKG 482
+A+ V+ ++ G++ ++L LG+ +GR W ++ G A +
Sbjct: 287 RAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAKNVSPWG-------PATDGA 339
Query: 483 TITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTW 542
T E Y ++ +A + + D W
Sbjct: 340 PGTYETANEDYDKLKTLGTDHYDAATG--------------SAWRY---DGT------QW 376
Query: 543 VSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRGMCN 581
S++ T K Y GLGG +LS D +
Sbjct: 377 WSYDNIATTKQKTDYIVSKGLGGGMWWELSGDRNGELVG 415
Score = 116 bits (291), Expect = 5e-28
Identities = 53/321 (16%), Positives = 91/321 (28%), Gaps = 95/321 (29%)
Query: 35 GTAKVGPEELKPALSMCTHLVYGFAGISDSG--------------DYHIKSLDKELDTDK 80
AK TH+ Y F I++ + + D D
Sbjct: 25 FQAKQLDVSGTAKN--LTHINYSFGNINNQTLTCFMANKAQGTGPNGSDGAGDAWADFGM 82
Query: 81 N----------------KGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDD 124
F Q+ LK P L +M+S+GG+ + +
Sbjct: 83 GYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSK---NFSKAAAT 139
Query: 125 PKYRKSFIETTVAALKKYG----------------FNGLDLAWEFPVVTEKHESYTLGSI 168
R+ + + + K F+G+D+ WE+P + +
Sbjct: 140 EASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDT- 198
Query: 169 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE------NFLLSASVLPHVNYTVY 222
D R +F L+ E + A ++LSA
Sbjct: 199 ----------VND------RANFKALLAEFRKQLDAYGSTNNKKYVLSAF---------- 232
Query: 223 FDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHF 282
+P+ D +D P+ + LD ++ YD NP + A L+
Sbjct: 233 --LPANPAD--------IDAGGWDDPANFKSLDFGSIQGYDLHGAW-NPTLTGHQANLYD 281
Query: 283 LDDPKYRKSFIETTVAALKKY 303
S + A+KKY
Sbjct: 282 DPADPRAPSKKFSADKAVKKY 302
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 146 bits (370), Expect = 8e-39
Identities = 63/314 (20%), Positives = 115/314 (36%), Gaps = 70/314 (22%)
Query: 276 YSAPLHFL-DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIK 334
YS + RK F +T++ +K GF+G+D+ W++P
Sbjct: 98 YSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQYP------------------- 138
Query: 335 KTVTGPKDDNPTLHREHFTLLIREMKAAFRA--------ENFLLSASVLPHVNYTVYFDV 386
K F LL++ + A A + FLL+ + +
Sbjct: 139 ---EDEKQ------ANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKLKL 189
Query: 387 PSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQ--NANAMVRWFIEHGVE 444
+ ++LD L AYDF + + + + + +++ V+ +I+ GV
Sbjct: 190 AEMDKYLDFWNLMAYDFSGSWDK--VSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVP 247
Query: 445 LQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSIT 504
K+VLG+P +GR++ S+ G +G G + E G+ Y ++ Q
Sbjct: 248 ANKIVLGMPLYGRAF---ASTDGIGTS---FNGVGGG---SWENGVWDYKDMPQQ----- 293
Query: 505 NAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLG 564
AQ E +Y++ + +S++ + AG KA Y G+G
Sbjct: 294 GAQ-------VTELEDIA-ASYSY-------DKNKRYLISYDTVKIAGKKAEYITKNGMG 338
Query: 565 GVAIIDLSLDDFRG 578
G + S D
Sbjct: 339 GGMWWESSSDKTGN 352
Score = 125 bits (317), Expect = 1e-31
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 54/221 (24%)
Query: 41 PEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDK-----------NKGKELFKQ 89
P++LK TH++Y FA I SG + D DTDK N KQ
Sbjct: 21 PQDLKADQ--FTHILYAFANIRPSG--EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQ 76
Query: 90 ITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDL 149
+ LK NL +LS+GG+ + + RK F +T++ +K GF+G+D+
Sbjct: 77 MYLLKKNNRNLKTLLSIGGW---TYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDI 133
Query: 150 AWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA----- 204
W++P K F LL++ + A A
Sbjct: 134 DWQYP----------------------EDEKQ------ANDFVLLLKACREALDAYSAKH 165
Query: 205 ---ENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
+ FLL+ + + + ++LD L AYDF
Sbjct: 166 PNGKKFLLTIASPAGPQNYNKLKLAEMDKYLDFWNLMAYDF 206
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 146 bits (371), Expect = 1e-38
Identities = 67/332 (20%), Positives = 115/332 (34%), Gaps = 78/332 (23%)
Query: 276 YSAPLH-FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIK 334
YS RK+F +T V L+ GF+GLD+ WE+P
Sbjct: 139 YSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYP------------------- 179
Query: 335 KTVTGPKDDNPTLHREHFTLLIREMKAAFRAE--------NFLLSASVLPHVNYTVYFDV 386
+ F LL++E++ A + +FLL+ + + +
Sbjct: 180 ---ENDQQ------ANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHL 230
Query: 387 PSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQ---NANAMVRWFIEHGV 443
+ Q LD L AYD+ + + + A + + P N + + GV
Sbjct: 231 KDMDQQLDFWNLMAYDYAGSFSS--LSGHQANV-YNDTSNPLSTPFNTQTALDLYRAGGV 287
Query: 444 ELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSI 503
K+VLG+P +GRS+ ++ G P +G G+ + E G+ Y +
Sbjct: 288 PANKIVLGMPLYGRSF---ANTDGPGKP---YNGVGQG---SWENGVWDYKALPQA---- 334
Query: 504 TNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGL 563
A + P +Y++ +S++ P+ A K+ Y K GL
Sbjct: 335 -GAT-------EHVLPDIM-ASYSY-------DATNKFLISYDNPQVANLKSGYIKSLGL 378
Query: 564 GGVAIIDLSLDDFRGMCNSNKFPILRAARTQF 595
GG D S D ++
Sbjct: 379 GGAMWWDSSSDKT------GSDSLITTVVNAL 404
Score = 130 bits (329), Expect = 5e-33
Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 55/234 (23%)
Query: 30 YFISSGT--AKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDK------- 80
YF++ P++L TH++Y FA + + D D +K
Sbjct: 48 YFVNWAIYGRNHNPQDLPVER--LTHVLYAFANV-RPETGEVYMTDSWADIEKHYPGDSW 104
Query: 81 ----NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTV 136
N KQ+ LK NL ++LS+GG+ + RK+F +T V
Sbjct: 105 SDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGW---TYSPNFAPAASTDAGRKNFAKTAV 161
Query: 137 AALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIR 196
L+ GF+GLD+ WE+P + F LL++
Sbjct: 162 KLLQDLGFDGLDIDWEYP----------------------ENDQQ------ANDFVLLLK 193
Query: 197 EMKAAFRAE--------NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
E++ A + +FLL+ + + + + Q LD L AYD+
Sbjct: 194 EVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDY 247
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 145 bits (367), Expect = 2e-38
Identities = 61/335 (18%), Positives = 116/335 (34%), Gaps = 84/335 (25%)
Query: 276 YSAPLHFL-DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIK 334
+S R +F +T V +K +GF+G+D+ WE+P
Sbjct: 116 WSTNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYP------------------- 156
Query: 335 KTVTGPKDDNPTLHREHFTLLIREMKAAFRAE--------NFLLSASVLPHVNYTVYFDV 386
D + LL++ ++ + +F LS + ++ +
Sbjct: 157 ---ASETD------ANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKL 207
Query: 387 PSITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQ---NANAMVRWFIEHGV 443
+ LD I L AYD+ + + + L + P + A V +I GV
Sbjct: 208 AQLGSVLDNINLMAYDYAGSWDS--VSGHQTNL-YPSTSNPSSTPFSTKAAVDAYIAAGV 264
Query: 444 ELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEIC---PQL 500
K++LG+P +GR+++ + G + E G+ Y + +
Sbjct: 265 PASKIILGMPIYGRAFVGTDG---------PGKPYSTIGEGSWESGIWDYKVLPKAGATV 315
Query: 501 VSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKL 560
++ + A A+ Y++ D + +S++ P+ K SYAK
Sbjct: 316 ITDSAAGAT----------------YSY---DSSSRT----MISYDTPDMVRTKVSYAKG 352
Query: 561 AGLGGVAIIDLSLDDFRGMCNSNKFPILRAARTQF 595
GLGG + S D ++ A +
Sbjct: 353 LGLGGSMFWEASADKT------GSDSLIGTALSSM 381
Score = 125 bits (317), Expect = 1e-31
Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 56/234 (23%)
Query: 30 YFISSGT--AKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDK------- 80
YF + G P +L+ + H++Y F + G + S D D +K
Sbjct: 26 YFTNWGIYGRNFQPADLQASK--ILHVLYSFMNLRVDGT--VYSGDTYADLEKHYSDDSW 81
Query: 81 ----NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTV 136
KQ+ LK +L IMLS+GG+ + R +F +T V
Sbjct: 82 NDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGW---TWSTNFPAAASTEATRATFAKTAV 138
Query: 137 AALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIR 196
+K +GF+G+D+ WE+P D + LL++
Sbjct: 139 EFMKDWGFDGIDVDWEYP----------------------ASETD------ANNMVLLLQ 170
Query: 197 EMKAAFRAE--------NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
++ + +F LS + ++ + + LD I L AYD+
Sbjct: 171 RVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNINLMAYDY 224
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 146 bits (369), Expect = 1e-37
Identities = 60/329 (18%), Positives = 112/329 (34%), Gaps = 56/329 (17%)
Query: 276 YSAPLHFLDDPKYRKSFIETTVAALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIK 334
S P + D K R +F+ + LK + F +G+D+ WEFP
Sbjct: 256 LSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAAD----------- 304
Query: 335 KTVTGPKDDNPTLHREHFTLLIREMKAAFRAE------NFLLSASVLPHVNYTVYFDVPS 388
P +D + L+RE++ + L++++ + D
Sbjct: 305 --KGDPVND-----GPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDYAD 357
Query: 389 ITQHLDMITLHAYDF----------------RTPQRNPKEADYSAPLHFVYGRVPHQNAN 432
Q++D I YDF + R + + + P A+
Sbjct: 358 AVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTAD 417
Query: 433 AMVRWFIEHGVELQKLVLGIPTFGRSW-LLEESSHKSGIPPLVADG----AGEKGTITKE 487
++ + GV KLVLG +GR W + + P+ G E
Sbjct: 418 NGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWE 477
Query: 488 EGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEE 547
+G++ Y I ++ N + D Q + + + G ++F++
Sbjct: 478 DGVIDYKGIKSFMLGANNTGINGF--EYGYDAQAE-APWVW-------NRSTGELITFDD 527
Query: 548 PETAGYKASYAKLAGLGGVAIIDLSLDDF 576
+ K +YAK GL G+ ++ D+
Sbjct: 528 HRSVLAKGNYAKSLGLAGLFSWEIDADNG 556
Score = 108 bits (270), Expect = 7e-25
Identities = 47/233 (20%), Positives = 76/233 (32%), Gaps = 61/233 (26%)
Query: 49 SMCTHLVYGFAGI----------------------SDSGDYHIKSLDKELDTDK------ 80
TH++YGF I DY + D K
Sbjct: 162 DNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAG 221
Query: 81 ----NKGKELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTV 136
K + + ALK P+L I+ S+GG+ D D K R +F+ +
Sbjct: 222 HEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYD----FVDKKNRDTFVASVK 277
Query: 137 AALKKYGF-NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLI 195
LK + F +G+D+ WEFP P +D + L+
Sbjct: 278 KFLKTWKFYDGVDIDWEFPGGGGAAAD-------------KGDPVND-----GPAYIALM 319
Query: 196 REMKAAFRAE------NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 242
RE++ + L++++ + D Q++D I YDF
Sbjct: 320 RELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDYADAVQYMDYIFAMTYDF 372
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 135 bits (342), Expect = 1e-35
Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 78/303 (25%)
Query: 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPK 341
L++P R + + + G+ G+ + +E
Sbjct: 89 VLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQV-----------------------SAA 125
Query: 342 DDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPH----VNYTVYFDVPSITQHLDMIT 397
D R+ FT +R+++ +A ++L+ +V + + +D I ++ +
Sbjct: 126 D------RDLFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNYMF 179
Query: 398 LHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGR 457
+ AYD+ P AP+ + + + I V +K+++G+P +G
Sbjct: 180 IMAYDWHHAGSEP---GPVAPITEI---------RRTIEFTIA-QVPSRKIIIGVPLYGY 226
Query: 458 SWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQE 517
W++ T + + I QA + +
Sbjct: 227 DWIIPYQPG------------------TVASAISNQNAIE----RAMRYQAPIQYSAEYQ 264
Query: 518 DPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFR 577
P + +Q V FE + K + L + L+L +
Sbjct: 265 SP------FFR----YSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLTLAEGH 314
Query: 578 GMC 580
Sbjct: 315 HHH 317
Score = 104 bits (261), Expect = 8e-25
Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 36/198 (18%)
Query: 49 SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGG 108
+ L+ +A S S + D + T + L + ++
Sbjct: 20 DLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIE-TTWQRRVTPLATITNLTS 78
Query: 109 FEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSI 168
E +VL++P R + + + G+ G+ + +E
Sbjct: 79 --GGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQV-------------- 122
Query: 169 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPH----VNYTVYFD 224
D R+ FT +R+++ +A ++L+ +V + + +D
Sbjct: 123 ---------SAAD------RDLFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYD 167
Query: 225 VPSITQHLDMITLHAYDF 242
I ++ + + AYD+
Sbjct: 168 YGGIGAVVNYMFIMAYDW 185
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 128 bits (323), Expect = 4e-33
Identities = 50/309 (16%), Positives = 87/309 (28%), Gaps = 98/309 (31%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
DPK RK I+ +A K+Y +G D+ +E D
Sbjct: 86 DPKARKELIQQIIAFTKEYKLDGFDIDYEEY------------------------DNWD- 120
Query: 345 PTLHREHFTLLIREMKAAFRAE--NFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 402
++F L+ + + A+ N L++ + VN Q+ D I L +YD
Sbjct: 121 -----KNFPSLLVFARGLYLAKEKNMLMTCA----VNSRWLNYGTEWEQYFDYINLMSYD 171
Query: 403 FRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLE 462
P +++ FV + W + K+V G+P +G SW
Sbjct: 172 RGAFTDKP--VQHASYDDFVK---------DLKYWNEQCRASKSKIVGGLPFYGYSWEE- 219
Query: 463 ESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRR 522
+G + G + Y+ I
Sbjct: 220 ----------------SLQGAVDDVRG-IRYSGILKH----------------------- 239
Query: 523 LGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRGMCNS 582
L ++ ++ + T K + K GV I L D
Sbjct: 240 -------LGNEAADKDNIGKTYYNGRPTIANKCKFIKENDYAGVMIWQLFQDAHNDNY-- 290
Query: 583 NKFPILRAA 591
++
Sbjct: 291 -DLKLINVV 298
Score = 111 bits (279), Expect = 4e-27
Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 52/197 (26%)
Query: 48 LSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVG 107
TH+ FA + G +I + K +++ + + N+ I++S+
Sbjct: 26 WKYLTHINASFARVKADGTLNINPVRKRIESVRETAH------------KHNVKILISLA 73
Query: 108 GFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 167
+ + ++DPK RK I+ +A K+Y +G D+ +E
Sbjct: 74 KNSPGE----FTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEY------------- 116
Query: 168 IWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE--NFLLSASVLPHVNYTVYFDV 225
D ++F L+ + + A+ N L++ + VN
Sbjct: 117 -----------DNWD------KNFPSLLVFARGLYLAKEKNMLMTCA----VNSRWLNYG 155
Query: 226 PSITQHLDMITLHAYDF 242
Q+ D I L +YD
Sbjct: 156 TEWEQYFDYINLMSYDR 172
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 116 bits (291), Expect = 3e-29
Identities = 30/230 (13%), Positives = 68/230 (29%), Gaps = 57/230 (24%)
Query: 38 KVGPEELKPALSMCT-HLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTF 96
K + P + V FA + S + + + + QI+A+K+
Sbjct: 16 KFSDVPINPHI--TKFQFVLSFAVD-YTASSPHTSTNGKFNVFWDSSILGPDQISAIKSS 72
Query: 97 QPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVV 156
PN+ + +S+GG + + + + + + +++Y +G+D+ +E
Sbjct: 73 HPNVRVAVSLGGASVGSNT-VQFQAASVDSWVSNAVTSLTRIIQRYNLDGIDIDYEHFQN 131
Query: 157 TEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPH 216
T+K F I + + + AS+ P
Sbjct: 132 TDK-----------------------------NTFAECIGRLITTLKKNGVISFASISPF 162
Query: 217 VNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRT 266
+ Y + ++ + I Y F+
Sbjct: 163 PSVDEY-----------------------YLALFNEYKNAINHINYQFKA 189
Score = 109 bits (273), Expect = 8e-27
Identities = 25/199 (12%), Positives = 55/199 (27%), Gaps = 34/199 (17%)
Query: 284 DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDD 343
+ + + + +++Y +G+D+ +E T+K
Sbjct: 98 SVDSWVSNAVTSLTRIIQRYNLDGIDIDYEHFQNTDK----------------------- 134
Query: 344 NPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 403
F I + + + AS+ P + Y + ++ + I Y F
Sbjct: 135 ------NTFAECIGRLITTLKKNGVISFASISPFPSVDEY-YLALFNEYKNAINHINYQF 187
Query: 404 RTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLLEE 463
+ + + + + N F G L + F + L+
Sbjct: 188 KAYDSSTSVDKFLGYYNNAASKYKGGNVLI---SF-STGPHPGGLPVDKGFFDAATSLKN 243
Query: 464 SSHKSGIPPLVADGAGEKG 482
GI AD +
Sbjct: 244 KGKLHGIAVWTADTSKSSD 262
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 99.3 bits (247), Expect = 1e-22
Identities = 42/304 (13%), Positives = 85/304 (27%), Gaps = 86/304 (28%)
Query: 282 FLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPK 341
LD + +T V K F+G + ++++K
Sbjct: 163 VLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQK--------------------- 201
Query: 342 DDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHV-------NYTVYFDVPSITQHLD 394
R ++ + A L + P + + + + LD
Sbjct: 202 -------RVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLD 254
Query: 395 MITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPT 454
+L YD+ T + +APL +V A V+ K++LG+
Sbjct: 255 GFSLMTYDYSTAH----QPGPNAPLSWV---------RACVQVLDPKSKWRSKILLGLNF 301
Query: 455 FGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLR 514
+G + + A E + L + +
Sbjct: 302 YGMDYAT-------------SKDAREPVVGARYIQTL------------KDHRPRM---- 332
Query: 515 KQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGLGGVAI--IDLS 572
D Q + ++ + V + ++ + A+ G+ GV+I +
Sbjct: 333 -VWDSQASEHFFEYKKSRSG-----RHVVFYPTLKSLQVRLELARELGV-GVSIWELGQG 385
Query: 573 LDDF 576
LD F
Sbjct: 386 LDYF 389
Score = 88.6 bits (219), Expect = 4e-19
Identities = 28/210 (13%), Positives = 58/210 (27%), Gaps = 45/210 (21%)
Query: 40 GPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPN 99
G + K S T + + + G + + D D+ + + K L
Sbjct: 92 GYDVTKVFGSKFTQISPVWLQLKRRGR-EMFEVTGLHDVDQGWMRAVRKHAKGLHIV--- 147
Query: 100 LNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEK 159
L + + + VLD + +T V K F+G + ++++K
Sbjct: 148 --PRLLFEDW----TYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQK 201
Query: 160 HESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHV-- 217
R ++ + A L + P +
Sbjct: 202 ----------------------------RVGLIHMLTHLAEALHQARLLALLVIPPAITP 233
Query: 218 -----NYTVYFDVPSITQHLDMITLHAYDF 242
+ + + LD +L YD+
Sbjct: 234 GTDQLGMFTHKEFEQLAPVLDGFSLMTYDY 263
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 85.4 bits (211), Expect = 1e-18
Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 35/225 (15%)
Query: 51 CTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFE 110
V A I+ L + + QI L+ Q + ++LSV G
Sbjct: 38 FDVAVIFAANINYDTGTKTAYLHFNENV-QRVLDNAVTQIRPLQ--QQGIKVLLSVLGNH 94
Query: 111 DDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWH 170
+ +F + A+ KYG +G+D E+
Sbjct: 95 QG----AGFANFPSQQAASAFAKQLSDAVAKYGLDGVDFDDEYA---------------- 134
Query: 171 KIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQ 230
+ + F L+ ++A + ++S + + + ++
Sbjct: 135 ------EYGNNGTAQPNDSSFVHLVTALRANMP--DKIISLYNIGPAASRLSYGGVDVSD 186
Query: 231 HLDMITLHAYDFL-YFDVPSITQHLDMITLHAYDFRTPQRNPKEA 274
D + + VP I ++ A + R+
Sbjct: 187 KFDYAW---NPYYGTWQVPGIALPKAQLSPAAVEIGRTSRSTVAD 228
Score = 63.5 bits (154), Expect = 3e-11
Identities = 20/165 (12%), Positives = 45/165 (27%), Gaps = 34/165 (20%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 342
+ +F + A+ KYG +G+D E+ +
Sbjct: 102 FPSQQAASAFAKQLSDAVAKYGLDGVDFDDEYA----------------------EYGNN 139
Query: 343 DNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYD 402
+ F L+ ++A + ++S + + + ++ D
Sbjct: 140 GTAQPNDSSFVHLVTALRANMP--DKIISLYNIGPAASRLSYGGVDVSDKFDYAW---NP 194
Query: 403 F-----RTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHG 442
+ PK A + GR + R ++ G
Sbjct: 195 YYGTWQVPGIALPKAQLSPAAVE--IGRTSRSTVADLARRTVDEG 237
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 73.5 bits (180), Expect = 3e-14
Identities = 38/219 (17%), Positives = 70/219 (31%), Gaps = 46/219 (21%)
Query: 34 SGTAKVGPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITAL 93
+GT + +++ P + F GD TD + I+ L
Sbjct: 18 NGTGIIKLKDVSPKW---DVINVSFGETG--GDRSTVEFSPVYGTDA----DFKSDISYL 68
Query: 94 KTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEF 153
K ++LS+GG L D + FI + + + KYGF+G+D+ E
Sbjct: 69 K--SKGKKVVLSIGGQNGVVL-------LPDNAAKDRFINSIQSLIDKYGFDGIDIDLES 119
Query: 154 PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSAS- 212
+ ++ + T + IR + + +FLLS +
Sbjct: 120 GIYLNGND----------------TNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMAP 162
Query: 213 --VLPHVNYTVY--------FDVPSITQHLDMITLHAYD 241
Y+ Y + + L I + Y+
Sbjct: 163 ETAYVQGGYSAYGSIWGAYLPIIYGVKDKLTYIHVQHYN 201
Score = 60.4 bits (146), Expect = 5e-10
Identities = 44/332 (13%), Positives = 85/332 (25%), Gaps = 107/332 (32%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 342
L D + FI + + + KYGF+G+D+ E + ++
Sbjct: 88 LPDNAAKDRFINSIQSLIDKYGFDGIDIDLESGIYLNGND----------------TNFK 131
Query: 343 DNPTLHREHFTLLIREMKAAFRAENFLLSAS---VLPHVNYTVY--------FDVPSITQ 391
+ T + IR + + +FLLS + Y+ Y + +
Sbjct: 132 NPTTPQIVNLISAIRTISDHYGP-DFLLSMAPETAYVQGGYSAYGSIWGAYLPIIYGVKD 190
Query: 392 HLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWF--------IEHGV 443
L I + Y+ +Y+ A+ ++ F I +
Sbjct: 191 KLTYIHVQHYN-AGSGIGMDGNNYNQG----TADYEVAMADMLLHGFPVGGNANNIFPAL 245
Query: 444 ELQKLVLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSI 503
++++G+P A +G G +S E+ L I
Sbjct: 246 RSDQVMIGLPAAPA-----------------AAPSG---------GYISPTEMKKALNYI 279
Query: 504 TNAQASPSLLRKQEDPQRRLGTYAFRLADKKLKQEYGTWVSFEEPETAGYKASYAKLAGL 563
V F ++ Y
Sbjct: 280 I------------------------------------KGVPFGGKYKLSNQSGY---PAF 300
Query: 564 GGVAIIDLSLDDFRGMCNSNKF-PILRAARTQ 594
G+ ++ D SN + Q
Sbjct: 301 RGLMSWSINWDAKNNFEFSNNYRTYFDGLSLQ 332
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 66.3 bits (161), Expect = 4e-12
Identities = 30/208 (14%), Positives = 63/208 (30%), Gaps = 43/208 (20%)
Query: 41 PEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNL 100
P E+ ++ H + GFA S + + +++ LK P +
Sbjct: 22 PTEIINTETLEFHYILGFAIESYYES---GKGTGTFEESWDVELFGPEKVKNLKRRHPEV 78
Query: 101 NIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG------FNGLDLAWEFP 154
+++S+GG + ++ + + E+ ++KY +G+D+ +E
Sbjct: 79 KVVISIGG----RGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHI 134
Query: 155 VVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVL 214
+ LI E+K + + S+
Sbjct: 135 ---------------------------RSDEPFATLMGQLITELKK--DDDLNINVVSIA 165
Query: 215 PHVNYTVYFDVPSITQHLDMITLHAYDF 242
P N + + D I Y F
Sbjct: 166 PSENNSSH-YQKLYNAKKDYINWVDYQF 192
Score = 38.5 bits (89), Expect = 0.005
Identities = 21/195 (10%), Positives = 46/195 (23%), Gaps = 58/195 (29%)
Query: 274 ADYSAPLHFLDDPKYRKSFIETTVAALKKYG------FNGLDLAWEFPVVTEKHESYTLG 327
+ P ++ + + E+ ++KY +G+D+ +E
Sbjct: 87 RGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHI------------ 134
Query: 328 SIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVP 387
+ LI E+K + + S+ P N + +
Sbjct: 135 ---------------RSDEPFATLMGQLITELKK--DDDLNINVVSIAPSENNSSH-YQK 176
Query: 388 SITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEH---GVE 444
D I Y F + + + +
Sbjct: 177 LYNAKKDYINWVDYQF-------------------SNQQKPVSTDDAFVEIFKSLEKDYH 217
Query: 445 LQKLVLGIPTFGRSW 459
K++ G T
Sbjct: 218 PHKVLPGFSTDPLDT 232
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 65.3 bits (159), Expect = 8e-12
Identities = 28/220 (12%), Positives = 63/220 (28%), Gaps = 49/220 (22%)
Query: 30 YFISSGTAKVGPEELKPAL---SMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKEL 86
Y + + + P + + TH++ + + HI D D L
Sbjct: 18 YHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHL-NEDPGHITLND--DPPDHEMYNPL 74
Query: 87 FKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNG 146
+ ++ LK + + +M +GG + Y + D + + + + +A ++++ +G
Sbjct: 75 WAEVPVLK--RSGVKVMGMLGG----AAQGSYRCLDGDQEKFERYYQPLLAMVRRHQLDG 128
Query: 147 LDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAEN 206
LDL E + LI +K ++
Sbjct: 129 LDLDVEEEMS-------------------------------LPGIIRLIDRLKLDL-GDD 156
Query: 207 FLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFD 246
F+++ D L
Sbjct: 157 FIIT-----LAPVAAALLGIGNLSGFDYRQLEQQRGSKIS 191
Score = 42.2 bits (99), Expect = 3e-04
Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 56/176 (31%)
Query: 284 DDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDD 343
D + + + + +A ++++ +GLDL E +
Sbjct: 105 GDQEKFERYYQPLLAMVRRHQLDGLDLDVEEEMS-------------------------- 138
Query: 344 NPTLHREHFTLLIREMKAAFRAENFLLS-----ASVLPHVNYTVYFDVPSITQHLDMITL 398
LI +K ++F+++ A++L N + + Q I+
Sbjct: 139 -----LPGIIRLIDRLKLDL-GDDFIITLAPVAAALLGIGNLSGFDYRQLEQQRGSKISW 192
Query: 399 HAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPT 454
+ F Y M + G Q++V G+ T
Sbjct: 193 YNAQF-------------------YNGWGLAEDPRMYAAIVAQGWSPQRVVYGLLT 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 2e-10
Identities = 89/504 (17%), Positives = 163/504 (32%), Gaps = 134/504 (26%)
Query: 14 MEDHLSKDQYH----IHSNL-YFISSGTAKVGPEELKPALSM--CTHLVYGFAGISDSGD 66
M+ + QY + F+ + K + K LS H++ + + SG
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM--SKDAVSGT 64
Query: 67 YHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFEDDD---DKEKYLEVLD 123
+ T +K +E+ ++ + + N ++S E Y+E D
Sbjct: 65 LRL------FWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 124 D--------PKY---RKSFIETTVAALKK---------YGFNG---------------LD 148
KY R AL + G G +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 149 LAWEFPV----VTEKHESYT----LGSIWHKIKKTVTGPKD--DNPTLHREHFTLLIREM 198
+F + + + T L + ++I T D N L +R +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 199 KAAFRAENFLLSASVLPHV-NYTV--YFDVPS---ITQHLDMITLHAYDFLYFDVPSITQ 252
+ EN LL VL +V N F++ +T +T DFL + T
Sbjct: 238 LKSKPYENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVT----DFL---SAATTT 287
Query: 253 HLDMI----TLHAYDFRT---------PQRNPKEADYSAPLHFLDDPKYRKSFIETTVAA 299
H+ + TL + ++ PQ P+E + P S I A
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--------SII----AE 335
Query: 300 LKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREM 359
+ +GL W+ + L +I I+ ++ P +R+ F L
Sbjct: 336 SIR---DGLAT-WDN---WKHVNCDKLTTI---IESSL---NVLEPAEYRKMFDRL---- 378
Query: 360 KAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRTPQRNPKEADYSAPL 419
+ F + + +L ++FDV + + LH Y ++ PKE+ S +
Sbjct: 379 -SVFP-PSAHIPTILLS----LIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTIS--I 428
Query: 420 HFVYGRVPHQNAN--AMVRWFIEH 441
+Y + + N A+ R ++H
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDH 452
Score = 53.7 bits (128), Expect = 2e-07
Identities = 79/456 (17%), Positives = 136/456 (29%), Gaps = 155/456 (33%)
Query: 1 MTFKRKDLSKDTRMEDHLSKDQYHIHSNLYFISSGTA--KVGPEELKPALSM-------- 50
+ K + S +T +E L K Y I N S ++ K+ ++ L
Sbjct: 187 LNLKNCN-SPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 51 ---------------------CTHLVY-GFAGISDSGD----YHIKSLDKELDT-DKNKG 83
C L+ F ++D HI SLD T ++
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEV 303
Query: 84 KELFKQITALKTFQ-PN-------LNIMLSVGGFEDDD------------DK-----EKY 118
K L + + P + + + D DK E
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 119 LEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPV---VTEKHESYTLGSIWHKIKKT 175
L VL+ +YRK F +V FP + L IW + K+
Sbjct: 363 LNVLEPAEYRKMFDRLSV----------------FPPSAHIPTI----LLSLIWFDVIKS 402
Query: 176 VTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLD-M 234
LH+ ++L+ + + + +S +P +Y + + L+
Sbjct: 403 D--VMVVVNKLHK--YSLVEK------QPKESTIS---IPS----IYLE---LKVKLENE 442
Query: 235 ITLH-----AYDFL-YFDVPSIT-QHLDM-ITLH-AYDFRTPQRNPKEADYSAPLHFLD- 284
LH Y+ FD + +LD H + + + + + + FLD
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDF 500
Query: 285 ---DPKYRKS--------FIETTVAALKKYGFNGLDLAWEFPVVTEKHESYT--LGSIWH 331
+ K R I T+ LK Y P + + Y + +I
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYK----------PYICDNDPKYERLVNAILD 550
Query: 332 KIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAEN 367
+ K L +T L+R A AE+
Sbjct: 551 FLPKI-------EENLICSKYTDLLR---IALMAED 576
Score = 34.8 bits (79), Expect = 0.098
Identities = 58/450 (12%), Positives = 109/450 (24%), Gaps = 148/450 (32%)
Query: 187 HREHFTLLIREMKAAFRAENFLLSASVLPHV--NYTVYFDVPSITQHL-DMITLHAYDFL 243
H H E + ++ +L + FD + +++ D +
Sbjct: 3 HHHHMDFETGEHQYQYK--------DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 244 YFDVPSITQHLDMITL------------------HAYDF-------RTPQRNPKEADYSA 278
+++ L + Y F Q + Y
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 279 PLHFL--DDPKYRKSFI--ETTVAALKK-------------YGFNG-------------- 307
L D+ + K + L++ G G
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 308 -LDLAWEFPV----VTEKHESYT----LGSIWHKIKKTVTGPKD--DNPTLHREHFTLLI 356
+ +F + + + T L + ++I T D N L +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 357 REMKAAFRAENFLLSASVLPHV-NYTV--YFDVPSITQHLDMITLHAYDFRTPQRNPKEA 413
R + + EN LL VL +V N F++ ++T T R +
Sbjct: 235 RRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCKI----LLT-------T--RFKQVT 278
Query: 414 DYSAPLHFVYGRVPHQNANAMVRWFIEH-GVELQKLVLGIPTFGRSWLLEESSHKSGIPP 472
D+ + + + H + L L +P
Sbjct: 279 DFLSAATTTHISLDHHSMT-----LTPDEVKSLLLKYLDCRP-------------QDLPR 320
Query: 473 LVADGAGEKGTITKEEGLLSYAEICPQLVSITNAQASPSLLRKQEDPQRRLGTYAFRLAD 532
V P+ +SI +R D + D
Sbjct: 321 EVLTTN-------------------PRRLSIIAE-----SIR---DGLATWDNWKHVNCD 353
Query: 533 KKLK-QEYGTWVSFEEPETAGYKASYAKLA 561
K E S E A Y+ + +L+
Sbjct: 354 KLTTIIE----SSLNVLEPAEYRKMFDRLS 379
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A
{Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 59.3 bits (143), Expect = 8e-10
Identities = 26/193 (13%), Positives = 52/193 (26%), Gaps = 33/193 (17%)
Query: 51 CTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFE 110
+V A I+ + + ++ K + L+ + ++LS+ G
Sbjct: 39 VDMVVLFSANINYDAANDKVFVSNNPNV-QHLLTNRAKYLKPLQ--DKGIKVILSILGNH 95
Query: 111 DDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWH 170
D K+F + Y +G+ E+
Sbjct: 96 DRSGIANL-----STARAKAFAQELKNTCDLYNLDGVFFDDEYSAYQ------------- 137
Query: 171 KIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLS-ASVLPHVNYTVYFDVPSIT 229
T P T L E K A N L++ ++ D +
Sbjct: 138 ------TPPPSGFVTPSNNAAARLAYETKQAMP--NKLVTVYVYSRTSSFPTAVDGVNAG 189
Query: 230 QHLDMITLHAYDF 242
++D +D+
Sbjct: 190 SYVDYAI---HDY 199
Score = 46.2 bits (109), Expect = 2e-05
Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 25/120 (20%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
K+F + Y +G+ E+ T P
Sbjct: 104 STARAKAFAQELKNTCDLYNLDGVFFDDEYSAYQ-------------------TPPPSGF 144
Query: 345 PTLHREHFTLLIREMKAAFRAENFLLS-ASVLPHVNYTVYFDVPSITQHLDMITLHAYDF 403
T L E K A N L++ ++ D + ++D +D+
Sbjct: 145 VTPSNNAAARLAYETKQAMP--NKLVTVYVYSRTSSFPTAVDGVNAGSYVDYAI---HDY 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 58/305 (19%), Positives = 96/305 (31%), Gaps = 95/305 (31%)
Query: 30 YFISSGTAKVGPEELKPALSMCTHLVYG------FAGISDSGDYHIKSLDKELDTDKNKG 83
Y +++ P EL+ L T G A +DS + S+ K +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-TDSWESFFVSVRKAI------- 300
Query: 84 KELFKQ-ITALKTFQPNLNI------------------MLSVGGFEDDDDKEKYLEVLDD 124
LF + + + PN ++ MLS+ + + Y+ +
Sbjct: 301 TVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNS 358
Query: 125 --PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHES-YTLGSIWHKIKKTVTGPKD 181
P ++ I +L NG VV+ +S Y L K K
Sbjct: 359 HLPAGKQVEI-----SL----VNGAK---NL-VVSGPPQSLYGLNLTLRKAKAP---SGL 402
Query: 182 DNPTLHREHFTLLIREMKAAFRAENFL-LSASVLP-HVNYTVYFD--VPSITQHL--DMI 235
D R F E K F FL +++ P H + I + L + +
Sbjct: 403 DQ---SRIPF----SERKLKFSNR-FLPVAS---PFH---SHLLVPASDLINKDLVKNNV 448
Query: 236 TLHAYDF---LY--FD-------VPSITQHL-DMITLHAYDFRTPQRNPKEADYSAPLHF 282
+ +A D +Y FD SI++ + D I + + A H
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW------ETTTQFKA-THI 501
Query: 283 LD-DP 286
LD P
Sbjct: 502 LDFGP 506
Score = 47.7 bits (113), Expect = 1e-05
Identities = 87/527 (16%), Positives = 155/527 (29%), Gaps = 176/527 (33%)
Query: 162 SYTL--GSIWHKIKKTVTGPKDDNPT-LH------REHFTLLIREMKAAFRAENFL---- 208
TL GS+ H + V PT +E F ++ E F A++
Sbjct: 8 PLTLSHGSLEHVL--LV-------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 209 -LSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRTP 267
L L +V+ V + + Q ++ L F+ +L+ +HA +
Sbjct: 59 ELVGKFLGYVSSLV--EPSKVGQFDQVLNLC---LTEFE----NCYLEGNDIHALAAKLL 109
Query: 268 QRNPKEAD---------YSAPLHFLDDP--KYRKSFI-------ETTVAALKKYGFNG-- 307
Q N +A P K S + + A+ F G
Sbjct: 110 QENDTTLVKTKELIKNYITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FGGQG 164
Query: 308 -----LD-LAWEFPVVTEKHESYT--LGSIWHKIKKT----VTGPKDDNPTLHREHFTLL 355
+ L + +++Y +G + +T + D FT
Sbjct: 165 NTDDYFEELR-------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK-----VFT-- 210
Query: 356 IREMKAAFRAENFLLSASVLPHVNY--TVYFDVPSI--TQ--HLDMITLHAYDFRTPQRN 409
+L + S P +Y ++ P I Q H ++T F
Sbjct: 211 -----QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGF-----T 259
Query: 410 PKEADYSAPLHFVYGRVP-----------------HQNANAMVRWFIEHGVELQKLVLGI 452
P E + L G + + GV +
Sbjct: 260 PGE--LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE----- 312
Query: 453 PTFGRSWL----LEES-SHKSGIP-P-LVADGAGEKGTITKEEGLLSY-AEICPQL---- 500
+ + L LE+S + G+P P L +T+E+ + Y + L
Sbjct: 313 -AYPNTSLPPSILEDSLENNEGVPSPMLSISN------LTQEQ-VQDYVNKTNSHLPAGK 364
Query: 501 ---VSITNAQ-----ASP--SL------LRKQEDP----QRRLGTYAFRLADKKLKQEYG 540
+S+ N + P SL LRK + P Q R+ +++KLK
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-----PFSERKLKFS-- 417
Query: 541 TWVSFEEPETAGYKASYAKLAGLGGVAIIDLSLDDFRGMCNSNKFPI 587
F P + + + L + DL ++ + P+
Sbjct: 418 --NRF-LPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 43.9 bits (103), Expect = 1e-04
Identities = 46/221 (20%), Positives = 65/221 (29%), Gaps = 82/221 (37%)
Query: 394 DMITLHAYDFRTP---QRNPKEADYSAPLHF--VYGRVPHQNANAMVRWFIEHGVELQKL 448
D Y F NP +HF G+ +N +AM+ I G +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLT----IHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 449 VLGIPTFGRSWLLEESSHKSGIPPLVADGAGEKGTITKEEGLLSYAEICPQLVSIT-NAQ 507
+ E + H + T E+GLLS T Q
Sbjct: 1706 IFK----------EINEHSTSY------------TFRSEKGLLS----------ATQFTQ 1733
Query: 508 ASPSLLRKQEDPQRRLGTYA-FRLADKKLKQEYGTWVSFEEPET---AGYKAS---YAKL 560
P+L L A F LK + P AG+ S YA L
Sbjct: 1734 --PALT---------LMEKAAFED----LKSK------GLIPADATFAGH--SLGEYAAL 1770
Query: 561 AGLGGVAIIDLSLDD------FRGMCNSNKFPILRAARTQF 595
A L V +S++ +RGM P R+ +
Sbjct: 1771 ASLADV----MSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Score = 34.6 bits (79), Expect = 0.11
Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 87/280 (31%)
Query: 252 QHLDMITLHAYDFRTPQRNP------KEADYSAPLHFLDDPKYRKSFIETTVAALKKYGF 305
Q M + Y + AD HF D YGF
Sbjct: 1627 QEQGM-GMDLYK-----TSKAAQDVWNRAD----NHFKD-----------------TYGF 1659
Query: 306 NGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRA 365
+ LD+ PV H G +I++ + + + + +E+ +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKG---KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 366 ENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAY----DFRTPQRNPKEAD------- 414
F +L + T + TQ +TL D ++ P +A
Sbjct: 1717 YTFRSEKGLL---SATQF------TQPA--LTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 415 -YSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPTFGRSWLL----EESSHKSG 469
Y+A A+ M IE V ++V F R +
Sbjct: 1766 EYAALASL---------ADVM---SIESLV---EVV-----FYRGMTMQVAVPRDELGRS 1805
Query: 470 IPPLVADGAGEKGTITKEEGLLSYAE-ICPQ---LVSITN 505
++A G +E L E + + LV I N
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Score = 29.2 bits (65), Expect = 5.0
Identities = 25/112 (22%), Positives = 33/112 (29%), Gaps = 38/112 (33%)
Query: 139 LKKYGFNGLDLAWEFPVVTEKH------------------ESYTLGSIWH-KIKKTVT-- 177
YGF+ LD+ PV H E+ G + KI K +
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 178 -------GPKDDNPTLHREHFT---LLIREMKAAFRAENFLLSASVLPHVNY 219
K L FT L + E AAF L S ++P
Sbjct: 1714 STSYTFRSEKG---LLSATQFTQPALTLMEK-AAFED---LKSKGLIPADAT 1758
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 50.3 bits (119), Expect = 1e-06
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 27/160 (16%)
Query: 94 KTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEF 153
+ + ++L + G D + + K F K Y +G++ E+
Sbjct: 236 PLRRRGVKVLLGLLGNHDITGLAQL-----SEQGAKDFAREVAQYCKAYNLDGVNYDDEY 290
Query: 154 PVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASV 213
S L P NP+ L E K A + L++
Sbjct: 291 S------NSPDLS-----------NPSLTNPS--TAAAARLCYETKQAMP--DKLVTVFD 329
Query: 214 LPHVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQH 253
+ D + +D I + Y + + +T+
Sbjct: 330 WGQMYGVATVDGVDAKEWID-IVVANYGSAAYPIGQMTKK 368
Score = 46.5 bits (109), Expect = 2e-05
Identities = 22/157 (14%), Positives = 42/157 (26%), Gaps = 21/157 (13%)
Query: 286 PKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNP 345
+ K F K Y +G++ E+ S L P NP
Sbjct: 262 EQGAKDFAREVAQYCKAYNLDGVNYDDEYS------NSPDLS-----------NPSLTNP 304
Query: 346 TLHREHFTLLIREMKAAFRAENFLLSASVLPHVNYTVYFDVPSITQHLDMITLHAYDFRT 405
+ L E K A + L++ + D + +D++ +
Sbjct: 305 S--TAAAARLCYETKQAMP--DKLVTVFDWGQMYGVATVDGVDAKEWIDIVVANYGSAAY 360
Query: 406 PQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHG 442
P + S + + + I+ G
Sbjct: 361 PIGQMTKKQCSGISMEFNLGGGGSLSASKAQSMIDGG 397
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 49.6 bits (118), Expect = 1e-06
Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 47/208 (22%)
Query: 40 GPEELKPALSMCTHLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPN 99
L + F + E +I+ L
Sbjct: 28 ADFNLSSTQEGYNVINVSFMKTPEGQTL------PTFKPYNKTDTEFRAEISKLN--AEG 79
Query: 100 LNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEK 159
++++++GG L + F+ + + YGF+GLD+ E +
Sbjct: 80 KSVLIALGG-------ADAHIELKKSQ-ESDFVNEIIRLVDTYGFDGLDIDLEQAAI--- 128
Query: 160 HESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAE--NFLLSAS---VL 214
DN T+ ++++K +R + NF+++ +
Sbjct: 129 -------------------EAADNQTV----IPSALKKVKDHYRKDGKNFMITMAPEFPY 165
Query: 215 PHVNYTVYFDVPSITQHLDMITLHAYDF 242
+ + ++ + D I Y+
Sbjct: 166 LTSSGKYAPYINNLDSYYDFINPQYYNQ 193
Score = 43.8 bits (103), Expect = 8e-05
Identities = 28/206 (13%), Positives = 66/206 (32%), Gaps = 38/206 (18%)
Query: 289 RKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLH 348
F+ + + YGF+GLD+ E + DN T+
Sbjct: 100 ESDFVNEIIRLVDTYGFDGLDIDLEQAAI----------------------EAADNQTV- 136
Query: 349 REHFTLLIREMKAAFRAE--NFLLSAS---VLPHVNYTVYFDVPSITQHLDMITLHAYDF 403
++++K +R + NF+++ + + + ++ + D I Y+
Sbjct: 137 ---IPSALKKVKDHYRKDGKNFMITMAPEFPYLTSSGKYAPYINNLDSYYDFINPQYYNQ 193
Query: 404 RTPQRNPKEADYSAPLHFVYGRVPHQNANAMVR---WFIEHGVELQKLVLGIPTFGRS-- 458
+ + + + K V+G+P+ +
Sbjct: 194 GGDGFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTGTDGFIKIPASKFVIGLPSNNDAAA 253
Query: 459 --WLLEESSHKSGIPPLVADGAGEKG 482
++ + ++ K+ + L A G KG
Sbjct: 254 TGYVKDPNAVKNALNRLKASGNEIKG 279
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT
barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB:
3a4w_A* 3a4x_A* 3afb_A
Length = 311
Score = 38.5 bits (89), Expect = 0.004
Identities = 19/195 (9%), Positives = 47/195 (24%), Gaps = 51/195 (26%)
Query: 52 THLVYGFAGISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQPNLNIMLSVGGFED 111
+ F I S Y+ + + +K ++ L+ + ++++ GG
Sbjct: 36 KYFTLAF--ILYSSVYNGPAWAGSIPLEKFV-----DEVRELR--EIGGEVIIAFGG--- 83
Query: 112 DDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHK 171
+ + E + + Y LD E + +K
Sbjct: 84 ----AVGPYLCQQASTPEQLAEWYIKVIDTYNATYLDFDIEAGIDADKL----------- 128
Query: 172 IKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLP----HVNYTVYFDVPS 227
+ ++ F + P Y + +
Sbjct: 129 --------------------ADALLIVQRERPWVKFSFTLPSDPGIGLAGGYGIIETMAK 168
Query: 228 ITQHLDMITLHAYDF 242
+D + D+
Sbjct: 169 KGVRVDRVNPMTMDY 183
Score = 32.0 bits (72), Expect = 0.45
Identities = 11/127 (8%), Positives = 26/127 (20%), Gaps = 35/127 (27%)
Query: 281 HFLDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGP 340
+ + E + + Y LD E + +K
Sbjct: 88 YLCQQASTPEQLAEWYIKVIDTYNATYLDFDIEAGIDADKL------------------- 128
Query: 341 KDDNPTLHREHFTLLIREMKAAFRAENFLLSASVLP----HVNYTVYFDVPSITQHLDMI 396
+ ++ F + P Y + + +D +
Sbjct: 129 ------------ADALLIVQRERPWVKFSFTLPSDPGIGLAGGYGIIETMAKKGVRVDRV 176
Query: 397 TLHAYDF 403
D+
Sbjct: 177 NPMTMDY 183
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 37.2 bits (86), Expect = 0.012
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 52 THLVYGFA-GISDSGDYHIKSLDKELDTDKNKGKELFKQITALKTFQP-NLNIMLSVGGF 109
+ FA + G LD+ G + + ++ Q +++SVGG
Sbjct: 31 DIIAVAFADATTTPGAVTFN-----LDSAGLGGYTVDQFKADVRAKQAAGKKVIISVGG- 84
Query: 110 EDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYGFNGLDLAWE 152
EK ++ +F + + +++YGF+G+D+ E
Sbjct: 85 ------EKGTVSVNSSASATNFANSVYSVMREYGFDGVDIDLE 121
Score = 36.0 bits (83), Expect = 0.028
Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 45/176 (25%)
Query: 283 LDDPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKD 342
++ +F + + +++YGF+G+D+ E +
Sbjct: 91 VNSSASATNFANSVYSVMREYGFDGVDIDLENGL-------------------------- 124
Query: 343 DNPTLHREHFTLLIREMKAAFRAENFLLSASV---LPHVNYTVYFDVP-SITQHLDMITL 398
NPT + T +R + A + +L+ + YF ++ L ++ +
Sbjct: 125 -NPT----YMTQALRALSAKAGP-DMILTMAPQTIDMQSTQGGYFQTALNVKDILTVVNM 178
Query: 399 HAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKLVLGIPT 454
Y+ + + Y + A+ +E G+ ++ LG+P
Sbjct: 179 QYYN------SGTMLGCDGKV---YAQGTVDFLTALACIQLEGGLAPSQVGLGLPA 225
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.13
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 480 EKGTITKEEGLLS-YA-EICPQLVSITNAQ 507
EK + K + L YA + P L +I A
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-AI-KAT 45
Score = 27.6 bits (60), Expect = 7.1
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 84 KELFKQITA-LKTFQPN----LNIMLSV 106
K+ K++ A LK + + L I ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase;
1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
PDB: 1eom_A*
Length = 290
Score = 31.4 bits (70), Expect = 0.76
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 11/119 (9%)
Query: 84 KELFKQITALKTFQPNLNIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKYG 143
K+L QI +L+ + ++ ++ + I++ V + K+
Sbjct: 66 KDLDTQIRSLQ--SRGIKVLQNIDDDVSWQSSKP--GGFASAAAYGDAIKSIV--IDKWK 119
Query: 144 FNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAF 202
+G+ L E + T F +I E+ F
Sbjct: 120 LDGISLDIE-----HSGAKPNPIPTFPGYAATGYNGWYSGSMAATPAFLNVISELTKYF 173
Score = 28.7 bits (63), Expect = 5.9
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 285 DPKYRKSFIETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGSIWHKIKKTVTGPKDDN 344
I++ V + K+ +G+ L E + T
Sbjct: 102 SAAAYGDAIKSIV--IDKWKLDGISLDIE-----HSGAKPNPIPTFPGYAATGYNGWYSG 154
Query: 345 PTLHREHFTLLIREMKAAF 363
F +I E+ F
Sbjct: 155 SMAATPAFLNVISELTKYF 173
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A*
2k7s_A 2a24_B
Length = 121
Score = 28.8 bits (65), Expect = 1.9
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 223 FDVPSITQHLDMITLHAYD--FLYFDVPSITQHL-----DMITLHAYDF 264
F ++ Q I+ H + F + D + +++ + +F
Sbjct: 3 FKGLNVCQPTRFISRHNIEGIFTFVD-HRCVATVGYQPQELLGKNIVEF 50
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC
transporter extracellular solute bindi protein,
D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A*
3oo7_A 3oo9_A 3ooa_A
Length = 415
Score = 28.6 bits (64), Expect = 6.4
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 101 NIMLSVGGFEDDDDKEKYLEVLDDPKYRKSFIETTVAALKKY---GFNGLD 148
+ L + G++ K+ DP K F L Y G NG
Sbjct: 196 ILNLRINGYDYHIKLMKHEVPWTDPGVTKVF--DQWRELAAYQQKGANGRT 244
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 28.5 bits (63), Expect = 7.3
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 216 HVNYTVYFDVPSITQHLDMITLHAYDFLYFDVPSITQHLDMITLHAYDFRT--PQRNPKE 273
+ ++ +FD+PS+ +++ +I F+ + ++ +A ++ + E
Sbjct: 80 RIPWSEFFDLPSLNKNIPVIEYE--QFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDE 137
Query: 274 ADYSAPLHFLDD--PKYRKSF---IETTVAALKKYGFNGLDLAWEFPVVTEKHESYTLGS 328
L + D YR F ET + G + P++ + ++
Sbjct: 138 RPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQG-SASIVAPLLLRNTSARSVML 196
Query: 329 IWHKIKKTVTGPKDDNPTLHRE-HFTLLIREMKAAFRAENF 368
+ + R F +RE+ FR+ +
Sbjct: 197 DRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHL 237
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase,
transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Length = 275
Score = 28.1 bits (62), Expect = 8.0
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 389 ITQHLDMITLHAYDFRTPQRNPKEADYSAPLHFVYGRVPHQNANAMVRWFIEHGVELQKL 448
HL DF P R+ Y + + + + + + L
Sbjct: 71 CAAHLTNPATKVIDFALPVRDASNPSYRKGVDDWHDAIAETWLSEITAHVPGLEGRVALL 130
Query: 449 VLGIPTF--GRSWLLEESSHKSGIP 471
V G P+ + E + +
Sbjct: 131 VWGDPSLYDSTLRIAERLKSRLPLT 155
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga
maritima} SCOP: a.8.3.3 c.6.2.4
Length = 528
Score = 28.3 bits (62), Expect = 8.3
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 169 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA----SVLPHVNYTVY 222
+ +T ++ LH + F L ++ + E L ++ P +N+ V
Sbjct: 466 FIMTTRTSVQYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWTDAIFPEINFRVM 523
Score = 28.3 bits (62), Expect = 8.3
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 330 WHKIKKTVTGPKDDNPTLHREHFTLLIREMKAAFRAENFLLSA----SVLPHVNYTVY 383
+ +T ++ LH + F L ++ + E L ++ P +N+ V
Sbjct: 466 FIMTTRTSVQYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWTDAIFPEINFRVM 523
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
alpha/beta barrel, protein-specificity-effector complex,
DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Length = 714
Score = 28.4 bits (64), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 109 FEDDDDKEKYLEVLDDPKYRKSFI 132
F D E+Y E++ DP RK++I
Sbjct: 322 FGDIAISERYDELIADPHVRKTYI 345
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,452,613
Number of extensions: 598458
Number of successful extensions: 1556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1326
Number of HSP's successfully gapped: 107
Length of query: 596
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 497
Effective length of database: 3,937,614
Effective search space: 1956994158
Effective search space used: 1956994158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)