BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11627
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 245
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/187 (77%), Positives = 156/187 (83%), Gaps = 2/187 (1%)
Query: 94 TPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVF 153
TPPPAYSP +D S +P+ + DV V Y E FWASIAYYELN RVGEVF
Sbjct: 10 TPPPAYSPSEDGN--SNNPNDGGQLLDAQMGDVAQVSYSEPAFWASIAYYELNCRVGEVF 67
Query: 154 HCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAEC 213
HC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENTRRHIGKGVHLYYV GEVYAEC
Sbjct: 68 HCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAEC 127
Query: 214 LSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELT 273
LSDSAIFVQSRNCN+ HGFH STVCKIP GCSLKIFNNQEFA+LLSQSVN+GFEAVYELT
Sbjct: 128 LSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELT 187
Query: 274 KMCTISV 280
KMCTI +
Sbjct: 188 KMCTIRM 194
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|B Chain B, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|C Chain C, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|D Chain D, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
Length = 218
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 139/156 (89%)
Query: 125 DVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVN 184
DV V Y+E W SI YYELN+RVGE FH S SV+VDGFT+PSNN NRFCLG LSNVN
Sbjct: 12 DVQAVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVN 71
Query: 185 RNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGC 244
RNSTIENTRRHIGKGVHLYYVGGEVYAECLSDS+IFVQSRNCN+HHGFH +TVCKIP+GC
Sbjct: 72 RNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGC 131
Query: 245 SLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISV 280
SLKIFNNQEFA+LL+QSVNHGFE VYELTKMCTI +
Sbjct: 132 SLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRM 167
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 188
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 130/145 (89%), Positives = 137/145 (94%)
Query: 136 FWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRH 195
FWASIAYYELN RVGEVFHC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENTRRH
Sbjct: 2 FWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRH 61
Query: 196 IGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFA 255
IGKGVHLYYV GEVYAECLSDSAIFVQSRNCN+HHGFH STVCKIP GCSLKIFNNQEFA
Sbjct: 62 IGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQEFA 121
Query: 256 ELLSQSVNHGFEAVYELTKMCTISV 280
+LLSQSVN+GFEAVYELTKMCTI +
Sbjct: 122 QLLSQSVNNGFEAVYELTKMCTIRM 146
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2
Length = 227
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
Query: 123 SSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSN 182
S D+ PV Y E FW SIAYYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSN
Sbjct: 20 SLDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNS-ERFCLGLLSN 78
Query: 183 VNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPA 242
VNRN+T+E TRRHIG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP
Sbjct: 79 VNRNATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 138
Query: 243 GCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISV 280
GC+LKIFNNQEFA LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 139 GCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRM 176
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
pdb|1DEV|C Chain C, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
Length = 196
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 113/156 (72%), Positives = 130/156 (83%), Gaps = 1/156 (0%)
Query: 125 DVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVN 184
D+ PV Y E FW SIAYYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSNVN
Sbjct: 2 DLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNS-ERFCLGLLSNVN 60
Query: 185 RNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGC 244
RN+T+E TRRHIG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP GC
Sbjct: 61 RNATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGC 120
Query: 245 SLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISV 280
+LKIFNNQEFA LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 121 NLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRM 156
>pdb|1MK2|A Chain A, Smad3 Sbd Complex
Length = 206
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 129/156 (82%), Gaps = 1/156 (0%)
Query: 125 DVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVN 184
D+ PV Y E FW SI+YYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSNVN
Sbjct: 1 DLQPVTYCEPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNS-ERFCLGLLSNVN 59
Query: 185 RNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGC 244
RN+ +E TRRHIG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP GC
Sbjct: 60 RNAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGC 119
Query: 245 SLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISV 280
+LKIFNNQEFA LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 120 NLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRM 155
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
pdb|1U7V|C Chain C, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 198
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 125/148 (84%), Gaps = 1/148 (0%)
Query: 133 EQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENT 192
E FW SIAYYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSNVNRN+T+E T
Sbjct: 1 EPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNS-ERFCLGLLSNVNRNATVEMT 59
Query: 193 RRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQ 252
RRHIG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP GC+LKIFNNQ
Sbjct: 60 RRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQ 119
Query: 253 EFAELLSQSVNHGFEAVYELTKMCTISV 280
EFA LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 120 EFAALLAQSVNQGFEAVYQLTRMCTIRM 147
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
pdb|1U7F|C Chain C, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 198
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 107/148 (72%), Positives = 124/148 (83%), Gaps = 1/148 (0%)
Query: 133 EQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENT 192
E FW SI+YYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSNVNRN+ +E T
Sbjct: 1 EPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNS-ERFCLGLLSNVNRNAAVELT 59
Query: 193 RRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQ 252
RRHIG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP GC+LKIFNNQ
Sbjct: 60 RRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQ 119
Query: 253 EFAELLSQSVNHGFEAVYELTKMCTISV 280
EFA LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 120 EFAALLAQSVNQGFEAVYQLTRMCTIRM 147
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3
Length = 197
Score = 227 bits (578), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/145 (73%), Positives = 123/145 (84%), Gaps = 1/145 (0%)
Query: 136 FWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRH 195
FW SI+YYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSNVNRN+ +E TRRH
Sbjct: 3 FWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNS-ERFCLGLLSNVNRNAAVELTRRH 61
Query: 196 IGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFA 255
IG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP GC+LKIFNNQEFA
Sbjct: 62 IGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFA 121
Query: 256 ELLSQSVNHGFEAVYELTKMCTISV 280
LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 122 ALLAQSVNQGFEAVYQLTRMCTIRM 146
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX
pdb|3KMP|B Chain B, Crystal Structure Of Smad1-Mh1DNA COMPLEX
Length = 124
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 52/68 (76%)
Query: 23 FTSPAVKKLLGWKQGDEEEKWAEXXXXXXXXXXXXXXGDIEELERALSCPGQPSKCVTIP 82
FTSPAVK+LLGWKQGDEEEKWAE G +EELE+ALSCPGQPS CVTIP
Sbjct: 1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIP 60
Query: 83 RSLDGRLQ 90
RSLDGRLQ
Sbjct: 61 RSLDGRLQ 68
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex
pdb|1MR1|B Chain B, Crystal Structure Of A Smad4-Ski Complex
Length = 235
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 136 FWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTR 193
+W SIAY+E++ +VGE F S V VDG+ +PS +RFCLGQLSNV+R IE R
Sbjct: 5 YWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIERAR 63
Query: 194 RHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNN 251
HIGKGV L G G+V+ CLSD A+FVQS + G V KI +K+F+
Sbjct: 64 LHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDL 123
Query: 252 QE 253
++
Sbjct: 124 RQ 125
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|B Chain B, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|C Chain C, Crystal Structure Analysis Of The Smad4 Active Fragment
Length = 268
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 11/145 (7%)
Query: 113 HSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSN 170
H+E A IS+ P +W SIAY+E++ +VGE F S V VDG+ +PS
Sbjct: 21 HNELAFQPPISNHPAP------EYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSG 74
Query: 171 NLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHH 229
+RFCLGQLSNV+R IE R HIGKGV L G G+V+ CLSD A+FVQS +
Sbjct: 75 G-DRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDRE 133
Query: 230 HGFHQS-TVCKIPAGCSLKIFNNQE 253
G V KI +K+F+ ++
Sbjct: 134 AGRAPGDAVHKIYPSAYIKVFDLRQ 158
>pdb|1G88|A Chain A, S4afl3arg515 Mutant
pdb|1G88|B Chain B, S4afl3arg515 Mutant
pdb|1G88|C Chain C, S4afl3arg515 Mutant
Length = 268
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 11/145 (7%)
Query: 113 HSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSN 170
H+E A IS+ P +W SIAY+E++ +VGE F S V VDG+ +PS
Sbjct: 21 HNELAFQPPISNHPAP------EYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSG 74
Query: 171 NLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHH 229
+RFCLGQLSNV+R IE R HIGKGV L G G+V+ CLSD A+FVQS +
Sbjct: 75 G-DRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDRE 133
Query: 230 HGFHQS-TVCKIPAGCSLKIFNNQE 253
G V KI +K+F+ ++
Sbjct: 134 AGRAPGDAVHKIYPSAYIKVFDLRQ 158
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal
Domain
Length = 234
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 136 FWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTR 193
+W SIAY+E++ +VGE F S V VDG+ +PS +RFCLGQLSNV+R IE R
Sbjct: 4 YWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIERAR 62
Query: 194 RHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNN 251
HIGKGV L G G+V+ CLSD A+FVQS + G V KI +K+F+
Sbjct: 63 LHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDL 122
Query: 252 QE 253
++
Sbjct: 123 RQ 124
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 239
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 136 FWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTR 193
+W SIAY+E++ +VGE F S V VDG+ +PS +RFCLGQLSNV+R IE R
Sbjct: 9 YWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIERAR 67
Query: 194 RHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNN 251
HIGKGV L G G+V+ CLSD A+FVQS + G V KI +K+F+
Sbjct: 68 LHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDL 127
Query: 252 QE 253
++
Sbjct: 128 RQ 129
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 236
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 136 FWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTR 193
+W SIAY+E++ +VGE F S V VDG+ +PS +RFCLGQLSNV+R IE R
Sbjct: 9 YWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIERAR 67
Query: 194 RHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNN 251
HIGKGV L G G+V+ CLSD A+FVQS + G V KI +K+F+
Sbjct: 68 LHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDL 127
Query: 252 QE 253
++
Sbjct: 128 RQ 129
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
pdb|1MHD|B Chain B, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
Length = 132
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 23 FTSPAVKKLLGWKQGDE---EEKWAEXXXXXXXXXXXXXXGDIEELERALSCPGQPSKCV 79
FT P VK+LLGWK+G++ EEKW E G ++ELE+A++ +KC+
Sbjct: 7 FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKT-GQLDELEKAITTQNVNTKCI 65
Query: 80 TIPRSLDGRLQ 90
TIPRSLDGRLQ
Sbjct: 66 TIPRSLDGRLQ 76
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A
Resolution
pdb|1OZJ|B Chain B, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A
Resolution
Length = 144
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 23 FTSPAVKKLLGWKQGDE---EEKWAEXXXXXXXXXXXXXXGDIEELERALSCPGQPSKCV 79
FT P VK+LLGWK+G++ EEKW E G ++ELE+A++ +KC+
Sbjct: 7 FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKT-GQLDELEKAITTQNVNTKCI 65
Query: 80 TIPRSLDGRLQ 90
TIPRSLDGRLQ
Sbjct: 66 TIPRSLDGRLQ 76
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive
Smad4 Mh1 Dimers
pdb|3QSV|B Chain B, Structural Basis For Dna Recognition By Constitutive
Smad4 Mh1 Dimers
pdb|3QSV|C Chain C, Structural Basis For Dna Recognition By Constitutive
Smad4 Mh1 Dimers
pdb|3QSV|D Chain D, Structural Basis For Dna Recognition By Constitutive
Smad4 Mh1 Dimers
Length = 132
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 28 VKKLLGWKQGDEEEKWAEXXXXXXXXXXXXXXGDIEELERALSCPG-QPSKCVTIPRSLD 86
V L+ +QG E E +A+ +++ L A++ G PSKCVTI R+LD
Sbjct: 12 VHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLD 71
Query: 87 GRLQ 90
GRLQ
Sbjct: 72 GRLQ 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,363,169
Number of Sequences: 62578
Number of extensions: 332757
Number of successful extensions: 758
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 24
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)