Query psy11627
Match_columns 291
No_of_seqs 165 out of 302
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 23:30:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmj_D Protein mothers against 100.0 3.2E-73 1.1E-77 519.0 12.8 195 92-289 8-203 (245)
2 1khx_A SMAD2; TGF-beta signali 100.0 3.4E-66 1.2E-70 468.6 14.9 164 125-289 22-185 (227)
3 1ygs_A SMAD4; tumor suppressor 100.0 5.8E-61 2E-65 436.4 13.3 156 133-289 1-194 (234)
4 1dd1_A SMAD4; B-sheet sandwich 100.0 1.7E-60 5.9E-65 439.8 13.6 160 129-289 31-228 (268)
5 3kmp_A SMAD1-MH1; protein-DNA 100.0 1.7E-29 5.7E-34 209.7 7.2 84 23-106 1-91 (124)
6 1ozj_A SMAD 3; MAD homology do 100.0 2.5E-29 8.5E-34 212.9 7.3 89 17-106 1-99 (144)
7 3qsv_A SMAD4, mothers against 99.9 1.2E-28 4E-33 206.3 6.3 84 21-104 5-96 (132)
8 3a77_A IRF-3, interferon regul 97.6 0.0005 1.7E-08 62.6 11.7 142 135-286 16-167 (242)
9 3dsh_A IRF-5, interferon regul 97.5 0.0007 2.4E-08 61.8 11.2 92 187-286 81-172 (246)
10 2l69_A Rossmann 2X3 fold prote 37.0 15 0.00051 29.1 1.8 43 39-82 59-110 (134)
11 4b4t_W RPN10, 26S proteasome r 31.6 51 0.0017 29.8 4.7 41 44-84 121-177 (268)
12 1ha6_A Macrophage inflammatory 29.7 27 0.00091 25.0 2.0 19 38-56 50-68 (70)
13 2o6n_A RH4B designed peptide; 29.4 51 0.0017 20.6 3.0 26 42-69 5-30 (35)
14 1r21_A Antigen KI-67; beta san 28.9 1.3E+02 0.0045 23.3 6.3 88 136-241 11-99 (128)
15 1vmc_A Stromal cell-derived fa 28.3 25 0.00084 25.1 1.7 17 38-54 55-71 (71)
16 4dnd_A Syntaxin-10, SYN10; str 25.3 60 0.002 26.3 3.6 29 39-70 63-91 (130)
17 1m8a_A Small inducible cytokin 24.6 22 0.00074 25.5 0.8 19 38-56 50-68 (70)
18 1ich_A TNF-1, tumor necrosis f 23.6 40 0.0014 26.9 2.2 36 47-82 74-111 (112)
19 1g6g_A Protein kinase RAD53; b 22.1 1.3E+02 0.0043 23.5 5.0 43 200-242 61-106 (127)
20 1qp6_A Protein (alpha2D); de n 20.6 37 0.0013 21.3 1.1 20 49-68 4-28 (35)
21 4djg_A Plectin-related protein 20.1 34 0.0012 23.8 1.0 9 49-57 7-15 (52)
No 1
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=3.2e-73 Score=518.96 Aligned_cols=195 Identities=73% Similarity=1.156 Sum_probs=154.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCceEEEEEEeecccccceeeeecCeEEEcCccCCCC
Q psy11627 92 IETPPPAYSPPQDEKHGSQSPHSEN-AMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSN 170 (291)
Q Consensus 92 ~~sppp~y~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~v~~~e~~~WCsIaYyEl~~RVGe~F~a~~~sv~VDGf~dps~ 170 (291)
++||||+|++++.+++++.+++.++ |+ .+.++++|+|+||++||+|+|||+|+||||+|+|++++|+||||+||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~y~ep~~WcsIaYyEln~RVGe~F~a~~~sv~IDGf~dps~ 84 (245)
T 3gmj_D 8 AGTPPPAYSPSEDGNSNNPNDGGQLLDA---QMGDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSN 84 (245)
T ss_dssp ------------------------------------------CCSCSEEEEEEETTEEEEEEEEECSSEEEEESSCCCCT
T ss_pred CCCCCCCcCCCCcCcccCCCCCccccCC---CCCccccccccCCCceeEEEEeecCceeccceeecCCeEEEeCCcCCCC
Confidence 5799999999988776655544332 22 1358899999999999999999999999999999999999999999986
Q ss_pred CCCceeeccccCCCCChhhHHhhhccCCceEEEEECCEEEEEeCCCceeeecCCCCCCCCCCCCcceeEcCCCceEEeee
Q psy11627 171 NLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFN 250 (291)
Q Consensus 171 ~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~~~g~V~~~nlS~~~VFVqSp~ln~~~g~~~~tV~KI~pg~slKIFd 250 (291)
+++|||||+|+|+||++++++||+|||+||+|++++|+||++|+|+++||||||+||+.+|+|+++||||+|||++||||
T Consensus 85 ~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~~G~V~~~nlS~~~IFVqS~~~n~~~g~~~~tV~KI~pg~slKiFd 164 (245)
T 3gmj_D 85 NSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFN 164 (245)
T ss_dssp TTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEETTEEEEEECSSSCEEEEEHHHHHHTTCCTTCCEEECTTCEEEEEC
T ss_pred CCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEECCEEEEEecCCCcEEECCCcccccCCCCccceEEeCCCCeEEEeC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCccccccCCCceeEEEeeeccccc
Q psy11627 251 NQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLA 289 (291)
Q Consensus 251 ~~~fa~~L~~~~~~g~~~v~~L~~~CtiRISFvKG~g~~ 289 (291)
+++|+++|+|++++||++||+|++||+||||||||||+.
T Consensus 165 ~~~fa~~L~qs~~~g~~~v~~L~~~CtiRiSFvKGWG~~ 203 (245)
T 3gmj_D 165 NQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAE 203 (245)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHGGGGEEEEEESSCCSTT
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhcceeeeEeecCcCcc
Confidence 999999999999999999999999999999999999974
No 2
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=100.00 E-value=3.4e-66 Score=468.56 Aligned_cols=164 Identities=69% Similarity=1.170 Sum_probs=158.1
Q ss_pred CCCCCCCCCCCceEEEEEEeecccccceeeeecCeEEEcCccCCCCCCCceeeccccCCCCChhhHHhhhccCCceEEEE
Q psy11627 125 DVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYY 204 (291)
Q Consensus 125 ~~~~v~~~e~~~WCsIaYyEl~~RVGe~F~a~~~sv~VDGf~dps~~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~ 204 (291)
+.+||+|++|++||+|+|||+|+||||+|+|++++|+||||+||+ +++|||||+|+|++|++++++||+|||+||+|++
T Consensus 22 ~~~~v~~~~~~~WcsIaYyE~n~rVGe~f~~~~~~v~IDGf~dps-~~~rfcLg~lsN~~R~~~v~~~R~~IG~GV~L~~ 100 (227)
T 1khx_A 22 DLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPS-NSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYY 100 (227)
T ss_dssp ---CCCCCCCSCSEEEEEEETTEECSCCEEECSSEEEEESSCCSS-CTTEEEGGGCCCTTCCHHHHHHHTTTTTCEEEEE
T ss_pred CCcccccCCCCceEEEEEEecCceeCCeEEecCCEEEEeCccCCC-CCCeeecccccCCCCcHHHHHHHHhhcCceEEEE
Confidence 788999999999999999999999999999999999999999996 5889999999999999999999999999999999
Q ss_pred ECCEEEEEeCCCceeeecCCCCCCCCCCCCcceeEcCCCceEEeeehHHHHHHHHHhhhcCCccccccCCCceeEEEeee
Q psy11627 205 VGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFR 284 (291)
Q Consensus 205 ~~g~V~~~nlS~~~VFVqSp~ln~~~g~~~~tV~KI~pg~slKIFd~~~fa~~L~~~~~~g~~~v~~L~~~CtiRISFvK 284 (291)
++|+||++|+|+++||||||+||+++|+|+++||||+||+++||||+++|+++|++++++||+++|+|++||+|||||||
T Consensus 101 ~~G~V~~~nlS~~~IFVqS~~~n~~~~~~~~tV~Ki~pg~~lKvFd~~~fa~~L~~~~~~~~~~v~~L~~~C~iRISFvK 180 (227)
T 1khx_A 101 IGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVK 180 (227)
T ss_dssp ETTEEEEEECSSSCEEEECHHHHHHTTCCTTCCEEECTTCEEEEEEHHHHHHHHHHHGGGCHHHHHGGGGGGEEEEEESC
T ss_pred ECCEEEEEEcCCCCEEEeCCCcccccCCCcCceEEeCCCCeEEEeCHHHHHHHHHHHhccCCCchhhhhhceEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy11627 285 RLVLA 289 (291)
Q Consensus 285 G~g~~ 289 (291)
|||..
T Consensus 181 GWG~~ 185 (227)
T 1khx_A 181 GWGAE 185 (227)
T ss_dssp CCSSS
T ss_pred CCCCC
Confidence 99974
No 3
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=100.00 E-value=5.8e-61 Score=436.42 Aligned_cols=156 Identities=38% Similarity=0.678 Sum_probs=142.6
Q ss_pred CCCceEEEEEEeecccccceeee--ecCeEEEcCccCCCCCCCceeeccccCCCCChhhHHhhhccCCceEEEEEC-CEE
Q psy11627 133 EQPFWASIAYYELNSRVGEVFHC--QSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVG-GEV 209 (291)
Q Consensus 133 e~~~WCsIaYyEl~~RVGe~F~a--~~~sv~VDGf~dps~~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~~~-g~V 209 (291)
+|++||+|+|||+|+||||+|++ +.++|+||||+||+ +++|||||+|+|++|++++++||+|||+||+|++++ |+|
T Consensus 1 ~p~~WcsIaYyEl~~rVGe~f~~~~~~~~v~IDG~~dps-~~~rfcLg~lsN~~R~~~~e~~R~~IG~GV~L~~~~~G~V 79 (234)
T 1ygs_A 1 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPS-GGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDV 79 (234)
T ss_dssp CCSEEEEEEEEETTEEEEEEEEEETTCSEEEEESSCCTT-CSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEETTTEE
T ss_pred CCCcceEEEEEecCceecceEEecCCCCEEEEecCcCCC-CCCeeecccccCCCCcHHHHHHHHhhcCceEEEEecCCcE
Confidence 47899999999999999999999 89999999999996 678999999999999999999999999999999997 999
Q ss_pred EEEeCCCceeeecCCCCCCCCCCCCc-ceeEcCCCceEEeeehHHHHHHHHHhhh------------------c-----C
Q psy11627 210 YAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNNQEFAELLSQSVN------------------H-----G 265 (291)
Q Consensus 210 ~~~nlS~~~VFVqSp~ln~~~g~~~~-tV~KI~pg~slKIFd~~~fa~~L~~~~~------------------~-----g 265 (291)
|++|+|++|||||||+||.+++++|+ +|||||||+++||||+++|+++|++... . |
T Consensus 80 w~~n~S~~~IFVqS~~ln~~~~~~p~~~V~Ki~pg~~lKvFd~~~f~~~l~~~~~~~q~~~~~~~a~~~g~~~~~~~~~g 159 (234)
T 1ygs_A 80 WVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGG 159 (234)
T ss_dssp EEEECSSSCEEEECHHHHHTTTCCTTCCCEEECTTCEEEEECHHHHHHHHHHHHHHHTC---------------------
T ss_pred EEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeCcHHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccC
Confidence 99999999999999999999999986 9999999999999999999988875321 0 3
Q ss_pred C-----------ccccccCCCceeEEEeeeccccc
Q psy11627 266 F-----------EAVYELTKMCTISVRPFRRLVLA 289 (291)
Q Consensus 266 ~-----------~~v~~L~~~CtiRISFvKG~g~~ 289 (291)
+ .+||+|++||+||||||||||..
T Consensus 160 ~~p~~~~~~~a~~~v~~L~~~c~iRISFvKGWG~~ 194 (234)
T 1ygs_A 160 IAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPD 194 (234)
T ss_dssp --------------CHHHHHTTEEEEESSCCCSTT
T ss_pred cccccccccccccchhhhhhceEEEEEEEcCCCCC
Confidence 3 26899999999999999999974
No 4
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=100.00 E-value=1.7e-60 Score=439.80 Aligned_cols=160 Identities=38% Similarity=0.652 Sum_probs=146.2
Q ss_pred CCCCCCCceEEEEEEeecccccceeee--ecCeEEEcCccCCCCCCCceeeccccCCCCChhhHHhhhccCCceEEEEEC
Q psy11627 129 VPYQEQPFWASIAYYELNSRVGEVFHC--QSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVG 206 (291)
Q Consensus 129 v~~~e~~~WCsIaYyEl~~RVGe~F~a--~~~sv~VDGf~dps~~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~~~ 206 (291)
+.+.++++||+|+|||+|+||||+|++ +.++|+||||+||+ +++|||||+|+|++|++++++||+|||+||+|++++
T Consensus 31 ~~~~~~~~WCsIaYyEln~rVGe~f~~~~~~~~v~VDGf~dps-~~~RfCLg~lsN~~R~~~ve~~R~~IG~GV~L~~~~ 109 (268)
T 1dd1_A 31 SNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPS-GGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKG 109 (268)
T ss_dssp CCSCCCSEEEEEEEEETTEECSCCEEEETTCSEEEEESCCCCC-CTTEEECSSCCCTTCCHHHHHHHTTTTTCEEEEEET
T ss_pred ccCCCCCceEEEEEEecCceecceEEecCCCCEEEEecCCCCC-CCCeeecccccCCCccHHHHHHHHhhcCceEEEEec
Confidence 467899999999999999999999999 79999999999996 678999999999999999999999999999999996
Q ss_pred -CEEEEEeCCCceeeecCCCCCCCCCCCCc-ceeEcCCCceEEeeehHHHHHHHHHhhh------------------c--
Q psy11627 207 -GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIFNNQEFAELLSQSVN------------------H-- 264 (291)
Q Consensus 207 -g~V~~~nlS~~~VFVqSp~ln~~~g~~~~-tV~KI~pg~slKIFd~~~fa~~L~~~~~------------------~-- 264 (291)
|+||++|+|+++||||||+||.+++++++ +||||+||+++||||+++|++.|.+... .
T Consensus 110 ~G~Vwl~nlS~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKVFD~~~f~~~l~~~~~~~q~a~~~q~a~~~g~~~~~~ 189 (268)
T 1dd1_A 110 EGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPG 189 (268)
T ss_dssp TTEEEEEECSSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEEECHHHHHHHHHHHHHHHTTTTCC-------------
T ss_pred CCcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeccHHHHHHHHHHHHhhhhhhhhhhhhhccccCCcc
Confidence 99999999999999999999999999986 9999999999999999999776654311 0
Q ss_pred ---CC-----------ccccccCCCceeEEEeeeccccc
Q psy11627 265 ---GF-----------EAVYELTKMCTISVRPFRRLVLA 289 (291)
Q Consensus 265 ---g~-----------~~v~~L~~~CtiRISFvKG~g~~ 289 (291)
|+ ++||+|++||+||||||||||..
T Consensus 190 ~~~g~~p~~~~~~~a~~~v~~L~~~C~iRISFVKGWG~~ 228 (268)
T 1dd1_A 190 SVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPD 228 (268)
T ss_dssp -------------CCSCCHHHHHGGGEEEEEESCCCSTT
T ss_pred cccccccccccccccccchhhhhhceeEEEEEEcCCCCC
Confidence 33 56899999999999999999974
No 5
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=99.96 E-value=1.7e-29 Score=209.72 Aligned_cols=84 Identities=75% Similarity=1.176 Sum_probs=74.4
Q ss_pred CChHHHHHHhcccCCChhhhHHHHHHHHHHHHhhhccCcHHHHHHHHhcCCCCCcceEecccCCCCCCcccC--CC----
Q psy11627 23 FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQQIET--PP---- 96 (291)
Q Consensus 23 ~~~~~v~~Ll~~kqg~eee~~~~kai~sLvKKLKkk~~~le~L~~Av~~~g~~s~CVtiprsLDGRlqv~~s--pp---- 96 (291)
||+|+||+|||||||||||+|++|||+|||||||||+++||+|++||+++|.+|+||||||+|||||||... +|
T Consensus 1 ~~~~~v~~ll~~~~~~~~~~~~~kav~sL~KklK~~~~~Le~L~~Av~~~~~~s~CV~ipr~ldgrlqv~~~k~~Phvi~ 80 (124)
T 3kmp_A 1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPRSLDGRLQVSHRKGLPHVIY 80 (124)
T ss_dssp CCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHCTTSCCCCCEEECCSSSCEEETTEEECHHHHH
T ss_pred CCchhhhHHhhhhcCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHhCCCCCCCeEEeccccccccccCCcccCceeeE
Confidence 689999999999999999999999999999999997799999999999999999999999999999999542 22
Q ss_pred -CCCCCCCCCC
Q psy11627 97 -PAYSPPQDEK 106 (291)
Q Consensus 97 -p~y~~~~~~~ 106 (291)
--|.+|+..+
T Consensus 81 crl~RWpdL~~ 91 (124)
T 3kmp_A 81 CRVWRWPDLQS 91 (124)
T ss_dssp HHHHTCTTCCC
T ss_pred EEeecCCcCCC
Confidence 1346777543
No 6
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=99.95 E-value=2.5e-29 Score=212.88 Aligned_cols=89 Identities=54% Similarity=0.926 Sum_probs=72.3
Q ss_pred ccccCCCChHHHHHHhcccCCC---hhhhHHHHHHHHHHHHhhhccCcHHHHHHHHhcCCCCCcceEecccCCCCCCccc
Q psy11627 17 LNSLFSFTSPAVKKLLGWKQGD---EEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQQIE 93 (291)
Q Consensus 17 ~~~~~~~~~~~v~~Ll~~kqg~---eee~~~~kai~sLvKKLKkk~~~le~L~~Av~~~g~~s~CVtiprsLDGRlqv~~ 93 (291)
|++||+|++|+||+|||||||+ |||+|++|||+|||||||| +++||+|++||+++|.+|+||||||+|||||||..
T Consensus 1 ~~~~~~~~~~~v~~ll~~~~~~~~~~~e~~~~kai~sLvKkLK~-~~~Le~L~~AV~s~g~~t~CV~iprsldgRlqv~~ 79 (144)
T 1ozj_A 1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSH 79 (144)
T ss_dssp ------CCCHHHHHHHTSCCCSCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHCCTTSCCCEEECCTTSCEEETT
T ss_pred CCccccCCcHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHhcc-cccHHHHHHHHhCCCCCCCeEEcccCCCccccccC
Confidence 6789999999999999999655 9999999999999999999 48999999999999889999999999999999953
Q ss_pred --CCC-----CCCCCCCCCC
Q psy11627 94 --TPP-----PAYSPPQDEK 106 (291)
Q Consensus 94 --spp-----p~y~~~~~~~ 106 (291)
..| --|.+||...
T Consensus 80 rk~~PHVi~cRlwRWPDL~~ 99 (144)
T 1ozj_A 80 RKGLPHVIYCRLWRWPDLHS 99 (144)
T ss_dssp EEECHHHHHHHHHTCTTCCS
T ss_pred ccCCCeeEEEEeeeCccCCC
Confidence 222 2346777543
No 7
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=99.95 E-value=1.2e-28 Score=206.32 Aligned_cols=84 Identities=42% Similarity=0.624 Sum_probs=74.3
Q ss_pred CCCChHHHHHHhcccCCChhhhHHHHHHHHHHHHhhhccCcHHHHHHHHhcCC-CCCcceEecccCCCCCCcccC--CC-
Q psy11627 21 FSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG-QPSKCVTIPRSLDGRLQQIET--PP- 96 (291)
Q Consensus 21 ~~~~~~~v~~Ll~~kqg~eee~~~~kai~sLvKKLKkk~~~le~L~~Av~~~g-~~s~CVtiprsLDGRlqv~~s--pp- 96 (291)
-.|++|+||+|||||||+|||||++||++||||||||++++||+|++||+++| ++|+||||||+|||||||... .|
T Consensus 5 ~~~~~~~v~~Ll~~k~g~e~ek~~~ka~~sLvKkLK~k~~~Le~L~~Av~s~g~~~s~CV~ipr~ldgrlqv~~rk~~PH 84 (132)
T 3qsv_A 5 NDACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPH 84 (132)
T ss_dssp SSCHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTSSCCCCCEEECCTTSCEEETTEEECHH
T ss_pred ccCcchhhhhhhccccCchhHHHHHHHHHHHHHHHhcccchHHHHHHHHhCCCCCCCCeEEeeccccccccccccccCcc
Confidence 35799999999999999999999999999999999997789999999999987 899999999999999999542 22
Q ss_pred ----CCCCCCCC
Q psy11627 97 ----PAYSPPQD 104 (291)
Q Consensus 97 ----p~y~~~~~ 104 (291)
--|.|||.
T Consensus 85 vi~cRlwRWPdL 96 (132)
T 3qsv_A 85 VIYARLWRWPDL 96 (132)
T ss_dssp HHHHHHHTCTTC
T ss_pred eeEEEEecCCcc
Confidence 23467876
No 8
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A
Probab=97.60 E-value=0.0005 Score=62.60 Aligned_cols=142 Identities=9% Similarity=0.018 Sum_probs=88.8
Q ss_pred CceEEEEEEeecccccceeeeecCe-EEEcCccCCCCCCCceeeccccCCCC---------ChhhHHhhhccCCceEEEE
Q psy11627 135 PFWASIAYYELNSRVGEVFHCQSHS-VIVDGFTNPSNNLNRFCLGQLSNVNR---------NSTIENTRRHIGKGVHLYY 204 (291)
Q Consensus 135 ~~WCsIaYyEl~~RVGe~F~a~~~s-v~VDGf~dps~~~~RfcLg~lsnv~R---------~~~ve~tR~~IG~GV~L~~ 204 (291)
..+-.|..|=....|++. .++++. +.| +..+...+ -..+-++.-+.- ..-++++-.|+++|+.|..
T Consensus 16 ~~~l~Vtv~YrG~~V~~~-~v~~p~GcRl--~~~~~~~~-~~~~e~V~lP~p~~~l~~~~q~~~t~~LL~~l~rGllL~~ 91 (242)
T 3a77_A 16 EWEFEVTAFYRGRQVFQQ-TISCPEGLRL--VGSEVGDR-TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWR 91 (242)
T ss_dssp CBEEEEEEEETTEEEEEE-EEECTTCEEE--C--------CCSSEEECCCCGGGTCCCHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccEEEEEEEECCEEEEEE-EEcCCCeEEE--ecCCCCCC-CCCCceeECCCCccccccHHHHHHHHHHHHhcCCeEEEEE
Confidence 455667666667778876 566654 444 22211101 112222211111 2346777789999999999
Q ss_pred ECCEEEEEeCCCceeeecCCCCCCCCCCCCcceeEcCCCceEEeeehHHHHHHHHHhhhcCCccccccCCCceeEEEeee
Q psy11627 205 VGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFR 284 (291)
Q Consensus 205 ~~g~V~~~nlS~~~VFVqSp~ln~~~g~~~~tV~KI~pg~slKIFd~~~fa~~L~~~~~~g~~~v~~L~~~CtiRISFvK 284 (291)
.++++|+..++...||.....-..+..-+ ..=.|++-+...||||.+.|-..|.+-.+.+-. ...++|.+.|..
T Consensus 92 ~~~giya~Rlcq~rVfW~~~~~~~p~~~~-~~P~kLeR~~~~klFd~~~Fl~eL~~f~~g~~~-----~P~~~I~LcFGE 165 (242)
T 3a77_A 92 AGQWLWAQRLGHCHTYWAVSEELLPNSGH-GPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGR-----SPRYALWFCVGE 165 (242)
T ss_dssp ETTEEEEEECSSSCEEEEEECSSCCCCTT-CCSEECCSSSCEEEEEHHHHHHHHHHHHTTSSC-----CCCCEEEEEECC
T ss_pred cCCcEEEEEcCCccEEEecCCCCCCCCCC-CCCcccCCCCceeecCHHHHHHHHHHHHcCCCC-----CCCcEEEEEeCC
Confidence 99999999999999999862211001001 123799999999999999999988865543321 235788888876
Q ss_pred cc
Q psy11627 285 RL 286 (291)
Q Consensus 285 G~ 286 (291)
=|
T Consensus 166 e~ 167 (242)
T 3a77_A 166 SW 167 (242)
T ss_dssp SS
T ss_pred cC
Confidence 55
No 9
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=97.50 E-value=0.0007 Score=61.79 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=69.3
Q ss_pred hhhHHhhhccCCceEEEEECCEEEEEeCCCceeeecCCCCCCCCCCCCcceeEcCCCceEEeeehHHHHHHHHHhhhcCC
Q psy11627 187 STIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGF 266 (291)
Q Consensus 187 ~~ve~tR~~IG~GV~L~~~~g~V~~~nlS~~~VFVqSp~ln~~~g~~~~tV~KI~pg~slKIFd~~~fa~~L~~~~~~g~ 266 (291)
..++++..|+++||.|...+++||+.+++...||...|.....++ .-.|++-....||||.+.|-..|.+-.+.+-
T Consensus 81 ~~t~~LL~~lerGllL~~~~~glyakRlcq~rVfW~gp~~~~~~~----~P~kLeR~~~~kLFd~~~F~~eL~~f~~g~~ 156 (246)
T 3dsh_A 81 FYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDS----CPNPIQREVKTKLFSLEHFLNELILFQKGQT 156 (246)
T ss_dssp HHHHHHHTTCSSCEEEEEETTEEEEEECSSSCEEEESTTSCCSCS----SCCBCCBTCCEEEEEHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhcCceEEEEcCCeEEEEecCCCCeEeeCCCCCCCCC----CccccccCCceeecCHHHHHHHHHHHhcCCC
Confidence 367788899999999999999999999999999997665432221 2468888889999999999998876544322
Q ss_pred ccccccCCCceeEEEeeecc
Q psy11627 267 EAVYELTKMCTISVRPFRRL 286 (291)
Q Consensus 267 ~~v~~L~~~CtiRISFvKG~ 286 (291)
. -...++|-+.|-.=|
T Consensus 157 ~----~~P~y~I~LcFGEe~ 172 (246)
T 3dsh_A 157 N----TPPPFEIFFCFGEEW 172 (246)
T ss_dssp S----SCCCCCEEEEESSCS
T ss_pred C----CCCCcEEEEEECCcC
Confidence 1 012457888886655
No 10
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.98 E-value=15 Score=29.12 Aligned_cols=43 Identities=35% Similarity=0.630 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHhhhc---------cCcHHHHHHHHhcCCCCCcceEec
Q psy11627 39 EEEKWAEKAVDSLVKKLKKS---------KGDIEELERALSCPGQPSKCVTIP 82 (291)
Q Consensus 39 eee~~~~kai~sLvKKLKkk---------~~~le~L~~Av~~~g~~s~CVtip 82 (291)
++.+||||||. +||-|-.+ ...||+.-+-|..+|-.-.-||-|
T Consensus 59 ddkewaekair-fvkslgaqvliiiydqdqnrleefsrevrrrgfevrtvtsp 110 (134)
T 2l69_A 59 DDKEWAEKAIR-FVKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSP 110 (134)
T ss_dssp SSHHHHHHHHH-HHHHHCCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSH
T ss_pred ccHHHHHHHHH-HHHhcCCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecCh
Confidence 56779999996 56776431 145889989998888766666655
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.64 E-value=51 Score=29.83 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhcc---------------CcHHHHHHHHhcC-CCCCcceEeccc
Q psy11627 44 AEKAVDSLVKKLKKSK---------------GDIEELERALSCP-GQPSKCVTIPRS 84 (291)
Q Consensus 44 ~~kai~sLvKKLKkk~---------------~~le~L~~Av~~~-g~~s~CVtiprs 84 (291)
.++.+..|.|||||.. ..||.|..++-.. +..|.+|+||..
T Consensus 121 ~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~g 177 (268)
T 4b4t_W 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPG 177 (268)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEECCC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeCCC
Confidence 3556778888888831 2478888888765 678999999875
No 12
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=29.66 E-value=27 Score=24.99 Aligned_cols=19 Identities=32% Similarity=0.713 Sum_probs=15.7
Q ss_pred ChhhhHHHHHHHHHHHHhh
Q psy11627 38 DEEEKWAEKAVDSLVKKLK 56 (291)
Q Consensus 38 ~eee~~~~kai~sLvKKLK 56 (291)
|.+++|+++.++.|-+|.+
T Consensus 50 dP~~~WVq~~i~~l~~~~~ 68 (70)
T 1ha6_A 50 DPKQNWVKRAVNLLSLRVK 68 (70)
T ss_dssp CTTSHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhhh
Confidence 7999999999887776654
No 13
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=29.36 E-value=51 Score=20.63 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhhhccCcHHHHHHHH
Q psy11627 42 KWAEKAVDSLVKKLKKSKGDIEELERAL 69 (291)
Q Consensus 42 ~~~~kai~sLvKKLKkk~~~le~L~~Av 69 (291)
.-++|-|--|+||-|+ .-||++.+|-
T Consensus 5 eqakkeiaylikkake--eileeikkak 30 (35)
T 2o6n_A 5 EQAKKEIAYLIKKAKE--EILEEIKKAK 30 (35)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3478899999999998 5788887764
No 14
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=28.88 E-value=1.3e+02 Score=23.31 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=56.7
Q ss_pred ceEEEEEEeecccccceeeeecCeEEEcCccCCCCCCCceeeccccCCCCChhhHHhhhccCCceEEEEECCEEEEEeC-
Q psy11627 136 FWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECL- 214 (291)
Q Consensus 136 ~WCsIaYyEl~~RVGe~F~a~~~sv~VDGf~dps~~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~~~g~V~~~nl- 214 (291)
.+..+.....+...|+.|......++| ..++. .-++|. +..|. |+| .+|.+.++.+|++-+
T Consensus 11 ~~~~L~v~~~~~~~g~~~~l~~~~~~I--GR~~~---~di~l~-------d~~VS--r~H----a~i~~~~~~~~l~Dl~ 72 (128)
T 1r21_A 11 PTRRLVTIKRSGVDGPHFPLSLSTCLF--GRGIE---CDIRIQ-------LPVVS--KQH----CKIEIHEQEAILHNFS 72 (128)
T ss_dssp CCEEEEEEEETTEEEEEEECCSSEEEE--ESSTT---SSEECC-------CTTSC--TTC----EEEEECSSCEEECCCC
T ss_pred CceEEEEEeCCCCCceEEEECCCCEEE--CCCCC---CCEEEC-------CCCCC--hhH----EEEEEECCEEEEEECC
Confidence 345555555556678889888788888 45542 235553 22332 344 367778899999988
Q ss_pred CCceeeecCCCCCCCCCCCCcceeEcC
Q psy11627 215 SDSAIFVQSRNCNHHHGFHQSTVCKIP 241 (291)
Q Consensus 215 S~~~VFVqSp~ln~~~g~~~~tV~KI~ 241 (291)
|.+.+||+..-+....-.....+.+|-
T Consensus 73 S~nGt~vNg~~i~~~~~L~~Gd~i~iG 99 (128)
T 1r21_A 73 STNPTQVNGSVIDEPVRLKHGDVITII 99 (128)
T ss_dssp SSSCCEETTEECSSCEECCTTEEEECS
T ss_pred CCCCEEECCEECCCcEEcCCCCEEEEC
Confidence 799999987666533334455666664
No 15
>1vmc_A Stromal cell-derived factor 1; CXC-chemokine, cytokine; NMR {Homo sapiens} SCOP: d.9.1.1
Probab=28.26 E-value=25 Score=25.15 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=14.5
Q ss_pred ChhhhHHHHHHHHHHHH
Q psy11627 38 DEEEKWAEKAVDSLVKK 54 (291)
Q Consensus 38 ~eee~~~~kai~sLvKK 54 (291)
|.+++|+++.++-|++|
T Consensus 55 dP~~~WVq~~i~~l~~~ 71 (71)
T 1vmc_A 55 DPKLKWIQEYLEKALNK 71 (71)
T ss_dssp CTTCHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHhC
Confidence 79999999998877764
No 16
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=25.32 E-value=60 Score=26.30 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHhhhccCcHHHHHHHHh
Q psy11627 39 EEEKWAEKAVDSLVKKLKKSKGDIEELERALS 70 (291)
Q Consensus 39 eee~~~~kai~sLvKKLKkk~~~le~L~~Av~ 70 (291)
+|-+|+.+-+..-++-|+. +|++|++||.
T Consensus 63 ~E~~~~~~EL~~~l~sie~---dLeDLe~sI~ 91 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEW---DLEDLEETIG 91 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5778988888888888888 8999999985
No 17
>1m8a_A Small inducible cytokine A20; CC-chemokine, IL-8 type dimer; 1.70A {Synthetic} SCOP: d.9.1.1 PDB: 2jyo_A 2hci_A
Probab=24.58 E-value=22 Score=25.47 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=13.0
Q ss_pred ChhhhHHHHHHHHHHHHhh
Q psy11627 38 DEEEKWAEKAVDSLVKKLK 56 (291)
Q Consensus 38 ~eee~~~~kai~sLvKKLK 56 (291)
|.+++|+++.++.|-+|.+
T Consensus 50 dP~~~WVq~~i~~l~~~~~ 68 (70)
T 1m8a_A 50 NPKQTWVKYIVRLLSKKVK 68 (70)
T ss_dssp CTTSHHHHHHHHHHTC---
T ss_pred CCChHHHHHHHHHHHHhhh
Confidence 7999999988866655433
No 18
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=23.56 E-value=40 Score=26.88 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhc--cCcHHHHHHHHhcCCCCCcceEec
Q psy11627 47 AVDSLVKKLKKS--KGDIEELERALSCPGQPSKCVTIP 82 (291)
Q Consensus 47 ai~sLvKKLKkk--~~~le~L~~Av~~~g~~s~CVtip 82 (291)
+++.|++-|.+= ....|.++..+......+.|-.+|
T Consensus 74 tv~~L~~aLr~~~l~~~ae~Ie~~l~~~~~~~~~~~~~ 111 (112)
T 1ich_A 74 TLELLGRVLRDMDLLGCLEDIEEALCGPAALPPAPSLL 111 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHhccHHHHHHHHHHHhccccCCCCCcCC
Confidence 355565555551 123455555555554433444433
No 19
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=22.13 E-value=1.3e+02 Score=23.47 Aligned_cols=43 Identities=7% Similarity=0.202 Sum_probs=28.2
Q ss_pred eEEEE-ECCEEEEEeCCCceeeecCCCCCC--CCCCCCcceeEcCC
Q psy11627 200 VHLYY-VGGEVYAECLSDSAIFVQSRNCNH--HHGFHQSTVCKIPA 242 (291)
Q Consensus 200 V~L~~-~~g~V~~~nlS~~~VFVqSp~ln~--~~g~~~~tV~KI~p 242 (291)
.+|.+ ++|.+|++.+|.+..||+..-+.. ..-.+...+.++-.
T Consensus 61 a~i~~~~~g~~~l~DlS~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~ 106 (127)
T 1g6g_A 61 FQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGV 106 (127)
T ss_dssp EEEEECTTSCEEEEECCSSCCEETTEECCTTCCEECCTTCEEEECT
T ss_pred eEEEECCCCcEEEEECCcCCeEECCEEcCCCCeEEcCCCCEEEECC
Confidence 36677 578899999999999998755543 12233344555544
No 20
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=20.62 E-value=37 Score=21.27 Aligned_cols=20 Identities=45% Similarity=0.792 Sum_probs=12.2
Q ss_pred HHHHHHhhh-----ccCcHHHHHHH
Q psy11627 49 DSLVKKLKK-----SKGDIEELERA 68 (291)
Q Consensus 49 ~sLvKKLKk-----k~~~le~L~~A 68 (291)
+.|-||.|+ ++|++|+|-+.
T Consensus 4 eelekkfkelwkgprrgeieelhkk 28 (35)
T 1qp6_A 4 EELEKKFKELWKGPRRGEIEELHKK 28 (35)
T ss_dssp HHHHHHHHHHHSSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccchHHHHHHH
Confidence 345556555 45778887654
No 21
>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}
Probab=20.11 E-value=34 Score=23.77 Aligned_cols=9 Identities=44% Similarity=0.696 Sum_probs=6.9
Q ss_pred HHHHHHhhh
Q psy11627 49 DSLVKKLKK 57 (291)
Q Consensus 49 ~sLvKKLKk 57 (291)
+.|+|||+.
T Consensus 7 ~vLlKkLr~ 15 (52)
T 4djg_A 7 HVLLKKLRD 15 (52)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 468888887
Done!