RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11627
(291 letters)
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental
protein, nucleus, phosphoprotein, transcription; 2.80A
{Drosophila melanogaster}
Length = 245
Score = 236 bits (602), Expect = 6e-78
Identities = 145/188 (77%), Positives = 156/188 (82%), Gaps = 2/188 (1%)
Query: 93 ETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEV 152
TPPPAYSP +D S +P+ + DV V Y E FWASIAYYELN RVGEV
Sbjct: 9 GTPPPAYSPSED--GNSNNPNDGGQLLDAQMGDVAQVSYSEPAFWASIAYYELNCRVGEV 66
Query: 153 FHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAE 212
FHC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENTRRHIGKGVHLYYV GEVYAE
Sbjct: 67 FHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAE 126
Query: 213 CLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYEL 272
CLSDSAIFVQSRNCN+ HGFH STVCKIP GCSLKIFNNQEFA+LLSQSVN+GFEAVYEL
Sbjct: 127 CLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYEL 186
Query: 273 TKMCTISV 280
TKMCTI +
Sbjct: 187 TKMCTIRM 194
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase
signaling, cancer, transcription; HET: SEP; 1.80A {Homo
sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A
1u7f_A* 1mjs_A 1khu_A 3dit_A
Length = 227
Score = 218 bits (557), Expect = 2e-71
Identities = 119/188 (63%), Positives = 140/188 (74%), Gaps = 13/188 (6%)
Query: 93 ETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEV 152
+T PA P + SP + + D+ PV Y E FW SIAYYELN RVGE
Sbjct: 2 DTGSPAELSPT-----TLSPVNHSL-------DLQPVTYSEPAFWCSIAYYELNQRVGET 49
Query: 153 FHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAE 212
FH S+ VDGFT+PSN+ RFCLG LSNVNRN+T+E TRRHIG+GV LYY+GGEV+AE
Sbjct: 50 FHASQPSLTVDGFTDPSNS-ERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEVFAE 108
Query: 213 CLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYEL 272
CLSDSAIFVQS NCN +G+H +TVCKIP GC+LKIFNNQEFA LL+QSVN GFEAVY+L
Sbjct: 109 CLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQL 168
Query: 273 TKMCTISV 280
T+MCTI +
Sbjct: 169 TRMCTIRM 176
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A
{Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Length = 268
Score = 190 bits (482), Expect = 1e-59
Identities = 67/184 (36%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 90 QQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRV 149
++ PP P H H+E A IS + +W SIAY+E++ +V
Sbjct: 2 GHLQHHPPMPPHPG---HYWPV-HNELAFQPPIS------NHPAPEYWCSIAYFEMDVQV 51
Query: 150 GEVFHCQSH--SVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVG- 206
GE F S V VDG+ +PS +RFCLGQLSNV+R IE R HIGKGV L G
Sbjct: 52 GETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGE 110
Query: 207 GEVYAECLSDSAIFVQSRNCNHHHGFH-QSTVCKIPAGCSLKIFNNQEFAELLSQSVNHG 265
G+V+ CLSD A+FVQS + G V KI +K+F+ ++ + Q
Sbjct: 111 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATA 170
Query: 266 FEAV 269
A
Sbjct: 171 QAAA 174
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal
mediator, beta-sandwich scaffold with A three-helix
bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP:
b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Length = 234
Score = 179 bits (455), Expect = 5e-56
Identities = 58/140 (41%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 134 QPFWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSNNLNRFCLGQLSNVNRNSTIEN 191
+W SIAY+E++ +VGE F S V VDG+ +PS +RFCLGQLSNV+R IE
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIER 60
Query: 192 TRRHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFH-QSTVCKIPAGCSLKIF 249
R HIGKGV L G G+V+ CLSD A+FVQS + G V KI +K+F
Sbjct: 61 ARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVF 120
Query: 250 NNQEFAELLSQSVNHGFEAV 269
+ ++ + Q A
Sbjct: 121 DLRQCHRQMQQQAATAQAAA 140
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta
hairpin, nucleus, transcription; 2.70A {Mus musculus}
Length = 124
Score = 108 bits (272), Expect = 6e-30
Identities = 61/68 (89%), Positives = 65/68 (95%)
Query: 23 FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIP 82
FTSPAVK+LLGWKQGDEEEKWAEKAVD+LVKKLKK KG +EELE+ALSCPGQPS CVTIP
Sbjct: 1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIP 60
Query: 83 RSLDGRLQ 90
RSLDGRLQ
Sbjct: 61 RSLDGRLQ 68
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta
signaling, zinc-binding module, transcription/DNA
complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB:
1mhd_A*
Length = 144
Score = 106 bits (265), Expect = 1e-28
Identities = 46/77 (59%), Positives = 60/77 (77%), Gaps = 4/77 (5%)
Query: 17 LNSLFSFTSPAVKKLLGWKQGD---EEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG 73
++S+ FT P VK+LLGWK+G+ +EEKW EKAV SLVKKLKK G ++ELE+A++
Sbjct: 1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQN 59
Query: 74 QPSKCVTIPRSLDGRLQ 90
+KC+TIPRSLDGRLQ
Sbjct: 60 VNTKCITIPRSLDGRLQ 76
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1,
transcription factor, DNA binding; HET: DNA; 2.71A {Mus
musculus}
Length = 132
Score = 96.6 bits (240), Expect = 4e-25
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 24 TSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG-QPSKCVTIP 82
V L+ +QG E E +A++A++SLVKKLK+ K +++ L A++ G PSKCVTI
Sbjct: 8 CLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQ 67
Query: 83 RSLDGRLQQIETPPP 97
R+LDGRLQ
Sbjct: 68 RTLDGRLQVAGRKGF 82
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein,
activator, antiviral defense, DNA-BI HOST-virus
interaction, nucleus, phosphoprotein; HET: SEP; 1.80A
{Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A
Length = 242
Score = 35.4 bits (81), Expect = 0.014
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 180 LSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCK 239
L++ S + + +G G+ L+ G ++A+ L + + + +
Sbjct: 67 LTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYW-AVSEELLPNSGHGPDGE 125
Query: 240 IPAGCSLKIFNNQEFAELLSQSVNHG 265
+P +F+ F L
Sbjct: 126 VPKDKEGGVFDLGPFIVDLITFTEGS 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.027
Identities = 49/342 (14%), Positives = 87/342 (25%), Gaps = 108/342 (31%)
Query: 3 TDEVESSSSGPMSSLNSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDI 62
TD + ++++ +S + + T VK LL K+ + L
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLL--------KYLDCRPQDL----------- 318
Query: 63 EELERALSCPGQPSKCVTIPRSLDGRLQQIETPPPAYSPPQDEKHGS--------QSP-- 112
P + I S+ L + + +K + P
Sbjct: 319 ----PREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLEPAE 370
Query: 113 HSENAMDTGISSDVTPVPYQE-QPFWASIAYYELNSRVGEVFHCQS-------------- 157
+ + + +P W + ++ V + H S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIP 429
Query: 158 ----------------HSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVH 201
H IVD + N F L + + HIG H
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYS---HIGH--H 480
Query: 202 LYYVG-GEVYAEC----LSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCS-----LK---- 247
L + E L F++ + H ST LK
Sbjct: 481 LKNIEHPERMTLFRMVFLDFR--FLEQKIR------HDSTAWNASGSILNTLQQLKFYKP 532
Query: 248 -IFNNQEFAELLSQSVNHGFEAVYELTKMCTISVR-PFRRLV 287
I +N E L ++ F L K+ + + L+
Sbjct: 533 YICDNDPKYERLVNAILD-F-----LPKIEENLICSKYTDLL 568
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced
dimerization, DNA-binding, nucleus transcription,
transcription regulation; 2.00A {Homo sapiens}
Length = 246
Score = 31.6 bits (71), Expect = 0.23
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 195 HIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEF 254
+ +G+ L G ++YA L +F + H I K+F+ + F
Sbjct: 89 VLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCP----NPIQREVKTKLFSLEHF 144
Query: 255 AELLSQSVNHG 265
L
Sbjct: 145 LNELILFQKGQ 155
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.42
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 39 EEE---KWAEKAVDSLVKKLKKSKGDIEEL-ERA 68
E E KW E+ L + SK +E E+A
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKA 116
Score = 29.4 bits (65), Expect = 1.1
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 23/63 (36%)
Query: 27 AVKKLLGWK--------QGDEEEK-----WAEKAVDSL-------VKKLKKSKGDIEELE 66
+++K W+ + D K W EKA L ++++K+K + +
Sbjct: 86 SIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 67 RAL 69
+A
Sbjct: 143 KAF 145
>1ihm_A Capsid protein; beta-barrel, EF-TU-like domain caliciviridae, T=3
icosahedra icosahedral virus; 3.40A {Norwalk virus}
SCOP: b.121.4.3
Length = 530
Score = 31.0 bits (69), Expect = 0.53
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 87 GRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPYQEQPFWASIAYYEL 145
G++ PP S + PH D + P+ + + +
Sbjct: 121 GKIIVSCIPPGFGSHNLTIAQATLFPHVI--ADVRTLDPIEVPLEDVRNVLFHNNDRNQQ 178
Query: 146 NSRV 149
R+
Sbjct: 179 TMRL 182
>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A
{Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*
Length = 301
Score = 30.2 bits (68), Expect = 0.69
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 72 PGQPSKCVTIPRSLDGRLQQIETPPPAYSPP----QDEKHGSQSPHSENAMDTGISSDVT 127
P + ++ P S R + P P P D + S H A+D G D
Sbjct: 216 PPEFAEAALTPWSAGPRFRLAAVPGPGPVEPVRLHLDAAGTADSLH-RRAVDAGARVDGP 274
Query: 128 PVPYQEQPFWAS 139
PV +P+ S
Sbjct: 275 PV---RRPWGRS 283
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32
carboxypeptidase-like fold, PSI, MCSG structural
genomics, protein structure initiative; 1.85A
{Arthrobacter aurescens}
Length = 562
Score = 30.3 bits (68), Expect = 0.82
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 36 QGDEEEKW-AEKAVDSLVKKLKKSKGDIE-ELERALSCPGQ 74
+ W EK D L L S+G ++ E R L PGQ
Sbjct: 473 ERWGTGTWTPEKGFDFLKANLDISEGQLQFEFTRYLGWPGQ 513
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.0
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 46 KAVDSLVKKLK--KSKG-DIEELERALS 70
+A+D++ L K + DI EL+++LS
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>2wzr_3 Polyprotein; capsid, RNA replication, RNA-directed RNA polymerase,
nucleotidyltransferase, HOST cytoplasmic vesicle, capsid
protein; 3.00A {Foot-and-mouth disease virus}
Length = 221
Score = 28.2 bits (62), Expect = 3.1
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 87 GRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPYQEQPFWASIAYYEL 145
+ PP + P+ + S H+E DTG++S T VPY +A E
Sbjct: 119 AKYMVAYIPPGTHPLPETPEMASHCYHAE--WDTGLNSTFTFTVPYFSAADYAYTYADEP 176
Query: 146 NSRVGEVFHCQSHSVIVDGFTNPSNNLNRFC 176
+ + + +
Sbjct: 177 EQASVQGWVGVY---QITDTHEKDGAVIVTV 204
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.0 bits (62), Expect = 3.7
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 35 KQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERAL 69
+ +++ KAV S K L + + L AL
Sbjct: 142 IEDEKQFDILNKAVTSYNKILTEEDLQMRRLATAL 176
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 26.6 bits (59), Expect = 4.5
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 18/88 (20%)
Query: 167 NPSNNLNRFCLGQLSNVNRNSTIENTRRHIGK---------GVHLYY---------VGGE 208
P N + +G L+ V N R IG+ G+ L G
Sbjct: 10 MPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGT 69
Query: 209 VYAECLSDSAIFVQSRNCNHHHGFHQST 236
Y C A+FV+ ++C F
Sbjct: 70 RYFTCALKKALFVKLKSCRPDSRFASLQ 97
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 28.1 bits (62), Expect = 5.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 24 TSPAVKKLLGWKQGDEEEKW 43
TSP KK + G ++KW
Sbjct: 813 TSPDAKKCIAACTGVPDDKW 832
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 27.7 bits (61), Expect = 5.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 24 TSPAVKKLLGWKQGDEEEKW 43
TS K+ + G ++++W
Sbjct: 806 TSKQAKQAIVDAPGVDDDQW 825
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 134
Score = 26.6 bits (59), Expect = 6.0
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 224 RNCNHHHGFHQSTVCKIPAGC 244
+C + F VCK + C
Sbjct: 118 SDCQAKNPF----VCKFSSEC 134
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_A
Length = 135
Score = 26.7 bits (59), Expect = 6.3
Identities = 5/21 (23%), Positives = 6/21 (28%), Gaps = 4/21 (19%)
Query: 224 RNCNHHHGFHQSTVCKIPAGC 244
C + VCK C
Sbjct: 119 VYCGTENPE----VCKYTPEC 135
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory
system, two-component signal transduction, transferase,
phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Length = 111
Score = 26.3 bits (58), Expect = 6.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 16 SLNSLFSFTSPAVKKLLGWKQGD 38
+ N + S K LG+ QG+
Sbjct: 16 ASNGRIIYISANSKLHLGYLQGE 38
>1ywm_A C protein alpha-antigen; beta sandwich, fibronectin fold,
antiparallel three-helix BU surface active protein;
1.86A {Streptococcus agalactiae} PDB: 2o0i_1
Length = 200
Score = 27.1 bits (59), Expect = 6.4
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 16 SLNSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIE 63
S+ ++ K+ + + KW E++ ++ L K DI+
Sbjct: 115 SVALTIYDSTTLRDKIEEVRTNANDPKWTEESRTEVLTGLDTIKTDID 162
>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral
protein, icosahedral virus; HET: MYR G; 3.20A {Human
coxsackievirus A21} PDB: 1z7z_1*
Length = 298
Score = 27.1 bits (59), Expect = 6.8
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 81 IPRSLDGRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTP 128
I ++ L+ + P + + + P + A++TG S P
Sbjct: 6 IDTAIKNALRVSQPPSTQSTEATSGVNSQEVP-ALTAVETGASGQAIP 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 27.0 bits (59), Expect = 8.5
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 95 PPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTP--VPYQEQPFWASIAYYELNSRVGEV 152
PPP ++E + MD G S +P V Y+++ WA I N V
Sbjct: 28 PPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPV 87
Query: 153 FH 154
Sbjct: 88 VQ 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.393
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,398,029
Number of extensions: 247997
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 30
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)