RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11627
(291 letters)
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 190
Score = 225 bits (575), Expect = 7e-75
Identities = 106/146 (72%), Positives = 123/146 (84%), Gaps = 1/146 (0%)
Query: 135 PFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRR 194
FW SI+YYELN RVGE FH S+ VDGFT+PSN+ RFCLG LSNVNRN+ +E TRR
Sbjct: 2 AFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNS-ERFCLGLLSNVNRNAAVELTRR 60
Query: 195 HIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEF 254
HIG+GV LYY+GGEV+AECLSDSAIFVQS NCN +G+H +TVCKIP GC+LKIFNNQEF
Sbjct: 61 HIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEF 120
Query: 255 AELLSQSVNHGFEAVYELTKMCTISV 280
A LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 121 AALLAQSVNQGFEAVYQLTRMCTIRM 146
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 191 bits (487), Expect = 3e-61
Identities = 61/183 (33%), Positives = 84/183 (45%), Gaps = 39/183 (21%)
Query: 134 QPFWASIAYYELNSRVGEVFHCQSHS--VIVDGFTNPSNNLNRFCLGQLSNVNRNSTIEN 191
+W SIAY+E++ +VGE F S V VDG+ +PS +RFCLGQLSNV+R IE
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGG-DRFCLGQLSNVHRTEAIER 60
Query: 192 TRRHIGKGVHLYYVG-GEVYAECLSDSAIFVQSRNCNHHHGFHQS-TVCKIPAGCSLKIF 249
R HIGKGV L G G+V+ CLSD A+FVQS + G V KI +K+F
Sbjct: 61 ARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVF 120
Query: 250 NNQEFAELLSQSVNHGFEA----------------------------------VYELTKM 275
+ ++ + Q A V +L ++
Sbjct: 121 DLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRL 180
Query: 276 CTI 278
C +
Sbjct: 181 CIL 183
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 110 bits (277), Expect = 4e-31
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 4/72 (5%)
Query: 23 FTSPAVKKLLGWKQGD---EEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCV 79
FT P VK+LLGWK+G+ +EEKW EKAV SLVKKLKK G ++ELE+A++ +KC+
Sbjct: 1 FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQNVNTKCI 59
Query: 80 TIPRSLDGRLQQ 91
TIPRSLDGRLQ
Sbjct: 60 TIPRSLDGRLQV 71
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
transactivation domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 239
Score = 31.7 bits (72), Expect = 0.063
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 194 RHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQE 253
+G G+ L+ G ++A+ L + + + ++P +F+
Sbjct: 78 SCLGGGLALWRAGQWLWAQRLGHCHTYW-AVSEELLPNSGHGPDGEVPKDKEGGVFDLGP 136
Query: 254 F 254
F
Sbjct: 137 F 137
>d1pvc3_ b.121.4.1 (3:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 235
Score = 31.0 bits (70), Expect = 0.14
Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 3/73 (4%)
Query: 96 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPYQEQPFWASIAYYELNSRVGEVFH 154
PP PP K H D G+ S T VP+ +
Sbjct: 136 PPGAQPPTSRKEAMLGTHVI--WDLGLQSSCTMVVPWISNVTYRQTTQDSFTEGGYISMF 193
Query: 155 CQSHSVIVDGFTN 167
Q+ V+
Sbjct: 194 YQTRIVVPLSTPK 206
>d1ncqc_ b.121.4.1 (C:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 236
Score = 30.9 bits (70), Expect = 0.14
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 96 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPY 131
PP PQD + H D G+ S + +P+
Sbjct: 133 PPGARGPQDRREAMLGTHVV--WDIGLQSTIVMTIPW 167
>d1bev3_ b.121.4.1 (3:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 242
Score = 29.8 bits (67), Expect = 0.32
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 96 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPYQEQPFWASIA 141
PP P++ + H D G+ S +T +P+ + ++
Sbjct: 135 PPGGDMPRNREEAMLGTHVI--WDFGLQSSITLVIPWISASHFRGVS 179
>d1aym3_ b.121.4.1 (3:) Rhinovirus coat proteins {Human rhinovirus
16, (HRV-16) [TaxId: 31708]}
Length = 238
Score = 29.4 bits (66), Expect = 0.38
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 96 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPYQEQPFWASIAYYELNS 147
PP P+ K H D G+ S V+ VP+ + +S
Sbjct: 135 PPGIGKPRSRKEAMLGTHVV--WDVGLQSTVSLVVPWISASQYRFTTPDTYSS 185
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 231
Score = 29.0 bits (65), Expect = 0.48
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 96 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPYQEQPFWASIAY 142
PP P Q+ ++ D G++S + VP+ + +
Sbjct: 130 PPGAGKPTSRDQAMQATYAI--WDLGLNSSYSFTVPFISPTHFRMVGT 175
>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 239
Score = 28.6 bits (64), Expect = 0.81
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 96 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPY 131
PP P+ K H D G+ S +P+
Sbjct: 137 PPGAGAPKTRKDAMLGTHVV--WDVGLQSSCVLCIPW 171
>d1d4m3_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 238
Score = 27.5 bits (61), Expect = 1.7
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 96 PPAYSPPQDEKHGSQSPHSENAMDTGISSDVT-PVPYQEQPFWASI 140
PP +PP+ K H D G+ S VP+ Q + +
Sbjct: 136 PPGANPPKTRKDAMLGTHII--WDIGLQSSCVLCVPWISQTHYRLV 179
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 27.2 bits (59), Expect = 2.6
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 182 NVNRNSTIENTRRHIGKGVH-LYYVG--GEVYAECLSDSAIFVQSRNCNHHHGFHQSTVC 238
++ S R + GV+ L +G GE +++ +
Sbjct: 18 ELDLESYERLVRYQLENGVNALIVLGTTGESPT--VNE------DEREKLVSRTLEIVDG 69
Query: 239 KIPAGCSLKIFNNQEFAELLSQSVNHGFEAV 269
KIP + ++ +L+ Q+ G V
Sbjct: 70 KIPVIVGAGTNSTEKTLKLVKQAEKLGANGV 100
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 148
Score = 25.7 bits (56), Expect = 5.3
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 237 VCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTK 274
VC + AE L + F+ +Y + K
Sbjct: 106 VCGGEGQHQFFAIKTGQQAEPLVVDLKDLFQVIYNVKK 143
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.8 bits (54), Expect = 5.6
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 18/82 (21%)
Query: 163 DGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGK---------GVHLY---------Y 204
G P N + +G L+ V N R IG+ G+ L
Sbjct: 6 SGLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGT 65
Query: 205 VGGEVYAECLSDSAIFVQSRNC 226
G Y C A+FV+ ++C
Sbjct: 66 FRGTRYFTCALKKALFVKLKSC 87
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon
Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Length = 148
Score = 25.2 bits (54), Expect = 7.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 13 PMSSLNSLFSFTSPAVKKLLGWK 35
P S L + P + + LG +
Sbjct: 124 PTSCLTNFTLLVVPLLLRALGRE 146
>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus
horikoshii, PH1647 [TaxId: 53953]}
Length = 144
Score = 25.2 bits (54), Expect = 7.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 13 PMSSLNSLFSFTSPAVKKLLGWK 35
P+S F A+ K++G +
Sbjct: 120 PVSVFAQFNLFVKHALAKMVGAQ 142
>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster
(Panulirus interruptus) [TaxId: 6735]}
Length = 263
Score = 25.4 bits (56), Expect = 7.9
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 135 PFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSN 182
PFW +Y R GE+F H + RF +LSN
Sbjct: 67 PFWWEDSYGYHLDRKGELFFWVHHQL-----------TARFDFERLSN 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.393
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,080,864
Number of extensions: 48902
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 21
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)