Query psy11630
Match_columns 169
No_of_seqs 109 out of 377
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 23:35:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.2 2E-06 6.7E-11 70.3 6.9 81 23-127 333-413 (451)
2 1pw4_A Glycerol-3-phosphate tr 97.8 9.7E-06 3.3E-10 66.1 3.9 97 2-127 87-186 (451)
3 4aps_A DI-OR tripeptide H+ sym 97.7 1.4E-05 4.8E-10 66.7 3.4 98 2-128 79-177 (491)
4 3o7q_A L-fucose-proton symport 97.5 0.00012 4E-09 59.7 5.4 95 2-125 86-182 (438)
5 2gfp_A EMRD, multidrug resista 97.4 0.00022 7.5E-09 57.3 6.1 96 2-128 60-155 (375)
6 3o7q_A L-fucose-proton symport 97.3 0.00081 2.8E-08 54.7 7.8 61 40-127 351-412 (438)
7 2xut_A Proton/peptide symporte 97.1 0.00066 2.3E-08 57.2 6.0 99 2-128 79-179 (524)
8 2xut_A Proton/peptide symporte 97.0 0.00047 1.6E-08 58.1 4.3 64 35-123 404-467 (524)
9 4aps_A DI-OR tripeptide H+ sym 97.0 0.00092 3.1E-08 55.7 5.7 65 35-124 385-449 (491)
10 4gc0_A D-xylose-proton symport 96.0 0.013 4.5E-07 48.6 6.4 39 60-122 393-431 (491)
11 2cfq_A Lactose permease; trans 95.6 0.028 9.4E-07 46.7 6.9 36 75-127 343-379 (417)
12 4gc0_A D-xylose-proton symport 93.3 0.16 5.6E-06 41.9 6.3 51 33-91 123-173 (491)
13 2gfp_A EMRD, multidrug resista 91.2 0.0045 1.5E-07 49.6 -5.5 68 35-128 290-357 (375)
14 2cfq_A Lactose permease; trans 91.1 0.026 8.9E-07 46.9 -1.2 34 77-128 135-168 (417)
15 2k1k_A Ephrin type-A receptor 54.6 20 0.00067 22.0 4.0 20 97-121 3-22 (38)
16 2l2t_A Receptor tyrosine-prote 32.4 52 0.0018 20.8 3.5 12 109-120 10-21 (44)
17 3arc_J Photosystem II reaction 27.2 23 0.0008 22.3 1.2 17 41-57 20-36 (40)
18 2ks1_B Epidermal growth factor 21.0 92 0.0031 19.6 3.1 12 109-120 11-22 (44)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.24 E-value=2e-06 Score=70.27 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhhhhhhhcccccccccCccccCCc
Q psy11630 23 TELFIYQLLGATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSIIDGTGSIASLSNTLSGDL 102 (169)
Q Consensus 23 ~~l~~y~~~~~~~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~atvtgiIdg~Gsi~~~~~~~a~~L 102 (169)
..++.+.+.+..+.+...+.+++.|++..++..... +...|..++ +..+++.|+.+..+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~-------~~~g~~~~~~~~~~~~----------- 393 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG-LHALELAPK-------KAAGTAAGFTGLFGYL----------- 393 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHH-HHHHHTSCT-------THHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHH-HHHHHHhch-------hhhhhHHHHHHHHHHH-----------
Confidence 444444443434677777778899999998887764 566777653 5788999998877765
Q ss_pred chhhccchhhhhhHHHHhhhccCCc
Q psy11630 103 ATVFDIGGIFGGIAAGLISDMTGKS 127 (169)
Q Consensus 103 S~~~DvGaaiggiliG~Isd~~GW~ 127 (169)
+|+++++.+.|++.|.+||+
T Consensus 394 -----~g~~~~~~~~g~l~~~~g~~ 413 (451)
T 1pw4_A 394 -----GGSVAASAIVGYTVDFFGWD 413 (451)
T ss_dssp -----HHHHHHHHHHHHHHHSSCSH
T ss_pred -----HHHHHHHHHHHHHHHhcCcH
Confidence 27788999999999999998
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.85 E-value=9.7e-06 Score=66.13 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=63.8
Q ss_pred CcCCCCCCCCcchHHHHHHHHHHHHHHHhhc--CCcHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhh
Q psy11630 2 TRLGLKPPTSRSKVQRVNHYTTELFIYQLLG--ATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALA 79 (169)
Q Consensus 2 ~~~g~~~~~~~~~v~~l~~~~~~l~~y~~~~--~~~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~a 79 (169)
||.|||... ++.+.+...+.+...+.+ ..+++..++..++.|+....-+... .+...|..+. +-.+
T Consensus 87 dr~g~r~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~-------~~r~ 154 (451)
T 1pw4_A 87 DRSNPRVFL----PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQ-------KERG 154 (451)
T ss_dssp HHSCHHHHH----HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTT-------THHH
T ss_pred HhcCchHHH----HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchH-HHHHHHHCCc-------hhhh
Confidence 677877533 344444444444444311 3455555666667777655444333 3566777653 4568
Q ss_pred hhhhhhcccccccccCccccCCcchhhccchhhhhhHHHHhhhccC-Cc
Q psy11630 80 TVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTG-KS 127 (169)
Q Consensus 80 tvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Isd~~G-W~ 127 (169)
.+.|+......+ |.++++.+.|++.+.+| |+
T Consensus 155 ~~~~~~~~~~~~-----------------g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 155 GIVSVWNCAHNV-----------------GGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp HHHHHHHHHHHH-----------------HHTSHHHHHHHHHHHTCCST
T ss_pred HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhccHH
Confidence 888998888888 99999999999889999 99
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.75 E-value=1.4e-05 Score=66.71 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=66.0
Q ss_pred Cc-CCCCCCCCcchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhh
Q psy11630 2 TR-LGLKPPTSRSKVQRVNHYTTELFIYQLLGATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALAT 80 (169)
Q Consensus 2 ~~-~g~~~~~~~~~v~~l~~~~~~l~~y~~~~~~~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~at 80 (169)
|| .|||... +..+.+...+.+...+ .++.+..++..++.|+...+-.... .+...|..+.+ ++..++
T Consensus 79 dr~~g~r~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~-----~~~r~~ 146 (491)
T 4aps_A 79 DRIIGARPAV----FWGGVLIMLGHIVLAL--PFGASALFGSIILIIIGTGFLKPNV-STLVGTLYDEH-----DRRRDA 146 (491)
T ss_dssp HHTSCHHHHH----HHHHHHHHHHHHHHHS--CCSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSSC-----TTHHHH
T ss_pred hccccchHHH----HHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhccchH-HHHHHHHcCcc-----ccccee
Confidence 67 6776544 3333444444444443 4556666666777887766554444 45667775532 456788
Q ss_pred hhhhhcccccccccCccccCCcchhhccchhhhhhHHHHhhhccCCcH
Q psy11630 81 VTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKSA 128 (169)
Q Consensus 81 vtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Isd~~GW~a 128 (169)
+.|+.+...++ |.++++++.|++.+.+||+.
T Consensus 147 ~~~~~~~~~~~-----------------g~~~~~~~~~~l~~~~g~~~ 177 (491)
T 4aps_A 147 GFSIFVFGINL-----------------GAFIAPLIVGAAQEAAGYHV 177 (491)
T ss_dssp HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHSCHHH
T ss_pred eehHHHHHHHH-----------------HHHHHHHHHHHHHhhhhHHH
Confidence 88888888888 99999999999999999993
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.50 E-value=0.00012 Score=59.66 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=63.0
Q ss_pred CcCCCCCCCCcchHHHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhh
Q psy11630 2 TRLGLKPPTSRSKVQRVNHYTTELFIYQ-LLGATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALAT 80 (169)
Q Consensus 2 ~~~g~~~~~~~~~v~~l~~~~~~l~~y~-~~~~~~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~at 80 (169)
||.|||... ++.+.....+.+++. .....+++..++..++.|+....-+... .+...|..++ +-.+.
T Consensus 86 dr~g~r~~l----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~-------~~r~~ 153 (438)
T 3o7q_A 86 KKLSYKAGI----ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPE-------SSGHF 153 (438)
T ss_dssp HHSCHHHHH----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCS-------TTHHH
T ss_pred HHhcchHHH----HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCc-------hhHHH
Confidence 678877555 333333333333331 1234567777777788888776555444 4566777653 45667
Q ss_pred hhhhhcccccccccCccccCCcchhhccchhhhhhHHHHhh-hccC
Q psy11630 81 VTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLIS-DMTG 125 (169)
Q Consensus 81 vtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Is-d~~G 125 (169)
+.|+.....++ |.++++.+.+++. +..+
T Consensus 154 ~~~~~~~~~~~-----------------g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 154 RLNLAQTFNSF-----------------GAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHH-----------------HHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHHHHHhcccc
Confidence 78888888888 9999999999998 6555
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.42 E-value=0.00022 Score=57.35 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=62.4
Q ss_pred CcCCCCCCCCcchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhhh
Q psy11630 2 TRLGLKPPTSRSKVQRVNHYTTELFIYQLLGATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATV 81 (169)
Q Consensus 2 ~~~g~~~~~~~~~v~~l~~~~~~l~~y~~~~~~~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~atv 81 (169)
||.|||... . ..........+.+.+. .+.+..++..++.|+....-+... .+...|..++ |-.+.+
T Consensus 60 dr~g~r~~~---~-~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~-~~~~~~~~~~-------~~~~~~ 125 (375)
T 2gfp_A 60 DRVGRRPVI---L-VGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMA-RTLPRDLYER-------TQLRHA 125 (375)
T ss_dssp TTSCCCCCC---H-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT-------SSCCSH
T ss_pred HHhCCchhH---H-HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHCCH-------HHHHHH
Confidence 899998877 3 3333333333333322 355555566667776655433333 4566676553 235667
Q ss_pred hhhhcccccccccCccccCCcchhhccchhhhhhHHHHhhhccCCcH
Q psy11630 82 TSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKSA 128 (169)
Q Consensus 82 tgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Isd~~GW~a 128 (169)
.|+.+...++ |.++++.+.+++.+.+||+.
T Consensus 126 ~~~~~~~~~~-----------------g~~~~~~~~~~l~~~~~~~~ 155 (375)
T 2gfp_A 126 NSLLNMGILV-----------------SPLLAPLIGGLLDTMWNWRA 155 (375)
T ss_dssp HHHHHHHHHH-----------------HHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHH-----------------HHHhhHHHHHHHHHhccHHH
Confidence 7888888888 99999999999999999994
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.27 E-value=0.00081 Score=54.70 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhhhhhhhcccccccccCccccCCcchhhccchhhhhhHHHH
Q psy11630 40 IVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGL 119 (169)
Q Consensus 40 ~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~atvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~ 119 (169)
.+.+++.|++..+-+....+ ...|.-++ + .++++++.. ++.+ |+++++.+.|+
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-------~-~~~~~~~~~-~~~~-----------------g~~~~~~~~g~ 403 (438)
T 3o7q_A 351 LIALTLCSAFMSIQYPTIFS-LGIKNLGQ-------D-TKYGSSFIV-MTII-----------------GGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHH-HHHSSCGG-------G-HHHHHHHHH-HTTH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhccc-------c-ccchhhHHH-HHHH-----------------HHHHHHHHHHH
Confidence 34456778777666655543 44444331 2 555666655 6778 99999999999
Q ss_pred hhhccC-Cc
Q psy11630 120 ISDMTG-KS 127 (169)
Q Consensus 120 Isd~~G-W~ 127 (169)
+.|.+| ++
T Consensus 404 l~~~~g~~~ 412 (438)
T 3o7q_A 404 VSDAAGNIP 412 (438)
T ss_dssp HHHHHTSSG
T ss_pred HHHHhcchH
Confidence 999999 77
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.12 E-value=0.00066 Score=57.19 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=61.3
Q ss_pred CcC-CCCCCCCcchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcch-hh
Q psy11630 2 TRL-GLKPPTSRSKVQRVNHYTTELFIYQLLGATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKA-LA 79 (169)
Q Consensus 2 ~~~-g~~~~~~~~~v~~l~~~~~~l~~y~~~~~~~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA-~a 79 (169)
||. |||... ++...+.....+.+.+. ..+.+..++..++.|+....-.... .+...|..+++ +++ ..
T Consensus 79 dr~~g~r~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~-----~r~~~~ 147 (524)
T 2xut_A 79 DRFFGKYNTI----LWLSLIYCVGHAFLAIF-EHSVQGFYTGLFLIALGSGGIKPLV-SSFMGDQFDQS-----NKSLAQ 147 (524)
T ss_dssp TTSSCSHHHH----HHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHTTHHHH-HHHHHHTCSTT-----TTTHHH
T ss_pred HHHhcchHHH----HHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccchhH-HHHHHHHcCcc-----chHHHH
Confidence 677 776544 33333444444444432 2266666666777887766654444 34666765532 222 23
Q ss_pred hhhhhhcccccccccCccccCCcchhhccchhhhhhHHHHhhhccCCcH
Q psy11630 80 TVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKSA 128 (169)
Q Consensus 80 tvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Isd~~GW~a 128 (169)
.+.|+.....++ |+++++++.|++.+.+||+.
T Consensus 148 ~~~~~~~~~~~~-----------------g~~~g~~~~~~l~~~~g~~~ 179 (524)
T 2xut_A 148 KAFDMFYFTINF-----------------GSFFASLSMPLLLKNFGAAV 179 (524)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHHTSTHHHHTSCHHH
T ss_pred HHHHHHHHHHHH-----------------HHHHHHHHHHHHhccccHHH
Confidence 334447777778 99999999999999999994
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.04 E-value=0.00047 Score=58.11 Aligned_cols=64 Identities=14% Similarity=-0.029 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhhhhhhhcccccccccCccccCCcchhhccchhhhh
Q psy11630 35 SLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGG 114 (169)
Q Consensus 35 ~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~atvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaigg 114 (169)
+.+..++.+++.|+....-.... .+...|..+ ++-.+++.|+.+....+ |+++++
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p-------~~~~g~~~g~~~~~~~~-----------------g~~~g~ 458 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATG-LEFAYSQAP-------KAMKGTIMSFWTLSVTV-----------------GNLWVL 458 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH-TTTHHHHCC-------TTCCTTTHHHHGGGHHH-----------------HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCc-------HHHHhHHHHHHHHHHHH-----------------HHHHHH
Confidence 45544455556665544333333 234566655 34678999999999999 999999
Q ss_pred hHHHHhhhc
Q psy11630 115 IAAGLISDM 123 (169)
Q Consensus 115 iliG~Isd~ 123 (169)
.+.|.+.|.
T Consensus 459 ~~~g~~~~~ 467 (524)
T 2xut_A 459 LANVSVKSP 467 (524)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHhccc
Confidence 999999874
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.00 E-value=0.00092 Score=55.70 Aligned_cols=65 Identities=12% Similarity=-0.054 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhhhhhhhcccccccccCccccCCcchhhccchhhhh
Q psy11630 35 SLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGG 114 (169)
Q Consensus 35 ~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~atvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaigg 114 (169)
+.+...+.+++.|+......... .+...|..++ +..+++.|+.+....+ |+++++
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p~-------~~~g~~~g~~~~~~~~-----------------g~~i~~ 439 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVG-LSVTTKLAPK-------AFNSQMMSMWFLSSSV-----------------GSALNA 439 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHH-HHHHHHHTTT-------TCSSSSTHHHHHHHHH-----------------HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCH-------HHHHHHHHHHHHHHHH-----------------HHHHHH
Confidence 44444444455555443322222 2356666553 4568899999988888 999999
Q ss_pred hHHHHhhhcc
Q psy11630 115 IAAGLISDMT 124 (169)
Q Consensus 115 iliG~Isd~~ 124 (169)
.+.|++.|..
T Consensus 440 ~~~~~~~~~~ 449 (491)
T 4aps_A 440 QLVTLYNAKS 449 (491)
T ss_dssp HHGGGGGGSS
T ss_pred HHHHHHhccc
Confidence 9999998853
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.99 E-value=0.013 Score=48.56 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=30.6
Q ss_pred HHhhhccccccccCCcchhhhhhhhhcccccccccCccccCCcchhhccchhhhhhHHHHhhh
Q psy11630 60 AVSAELGTHECLEGNSKALATVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISD 122 (169)
Q Consensus 60 a~a~dlg~~~~l~~n~kA~atvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Isd 122 (169)
+...|+-+. +.-+++.|+...++.+ |+++++.+.+.+.+
T Consensus 393 ~~~~E~fPt-------~~R~~~~g~~~~~~~~-----------------~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 393 VLLSEIFPN-------AIRGKALAIAVAAQWL-----------------ANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHSSCT-------TTHHHHHHHHHHHHHH-----------------HHHHHHTHHHHHCH
T ss_pred HHHHHhCCH-------hHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 456788663 4678889999999999 99888888887754
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.61 E-value=0.028 Score=46.75 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=30.7
Q ss_pred cchhhhhhhhh-cccccccccCccccCCcchhhccchhhhhhHHHHhhhccCCc
Q psy11630 75 SKALATVTSII-DGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKS 127 (169)
Q Consensus 75 ~kA~atvtgiI-dg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Isd~~GW~ 127 (169)
++..|++.|+. +..+.+ |+++++++.|++.|.+|++
T Consensus 343 ~~~~g~~~g~~~~~~~~l-----------------g~~~gp~l~G~l~~~~g~~ 379 (417)
T 2cfq_A 343 VRFSATIYLVCFCFFKQL-----------------AMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp HHHHHHHHHHHHTTTHHH-----------------HHHHHTHHHHTHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHhH-----------------HHHHhhhhHHHHHHhcCcH
Confidence 35788888985 777778 9999999999999988876
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=93.31 E-value=0.16 Score=41.92 Aligned_cols=51 Identities=16% Similarity=-0.003 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhhhhhhhcccccc
Q psy11630 33 ATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSIIDGTGSI 91 (169)
Q Consensus 33 ~~~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~atvtgiIdg~Gsi 91 (169)
+.+++..++.=++.|+..++.+... .+...|..+. +--+...++....-.+
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~-~~~i~E~~p~-------~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLS-PMYIAELAPA-------HIRGKLVSFNQFAIIF 173 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSCG-------GGHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCH-------HhhhhhHHhhhhhhhh
Confidence 4567777777789999888877666 4677888763 3445555655554445
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=91.22 E-value=0.0045 Score=49.63 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHhhhhcchHHHHHHHHhhhccccccccCCcchhhhhhhhhcccccccccCccccCCcchhhccchhhhh
Q psy11630 35 SLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGG 114 (169)
Q Consensus 35 ~~~~~~~ll~l~Gffi~GP~~Li~~a~a~dlg~~~~l~~n~kA~atvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaigg 114 (169)
+.+...+.+++.|+.....+... .+...|..+ +..+++.|+.+..+++ |+++++
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p--------~~~g~~~g~~~~~~~~-----------------g~~~~~ 343 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP--------FLAGTAGALVGGLQNI-----------------GSGVLA 343 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTT-HHHHHTHHH--------HHHHHHHHHHHHHHHH-----------------HHHCCS
T ss_pred cHHHHHHHHHHHHHHHHHhhHHH-HHHHHHhCC--------cccchHHHHHHHHHHH-----------------HHHHHH
Confidence 34444444556665544433333 345556544 2569999999999999 999999
Q ss_pred hHHHHhhhccCCcH
Q psy11630 115 IAAGLISDMTGKSA 128 (169)
Q Consensus 115 iliG~Isd~~GW~a 128 (169)
.+.|.+.|..+|+.
T Consensus 344 ~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 344 SLSAMLPQTGQGSL 357 (375)
T ss_dssp TTCTHHHHHHHHHH
T ss_pred HHHHHHhcCCcccH
Confidence 99999998777773
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=91.10 E-value=0.026 Score=46.91 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=27.8
Q ss_pred hhhhhhhhhcccccccccCccccCCcchhhccchhhhhhHHHHhhhccCCcH
Q psy11630 77 ALATVTSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKSA 128 (169)
Q Consensus 77 A~atvtgiIdg~Gsi~~~~~~~a~~LS~~~DvGaaiggiliG~Isd~~GW~a 128 (169)
..+.+.|.....+.+ |+++++.+.|++.+ .+|+.
T Consensus 135 ~~~~~~g~~~~~~~~-----------------g~~~~~~l~~~l~~-~~~~~ 168 (417)
T 2cfq_A 135 RSNFEFGRARMFGCV-----------------GWALGASIVGIMFT-INNQF 168 (417)
T ss_dssp HHTCCHHHHSSSTTT-----------------HHHHHHHHHHHHHH-HCSHH
T ss_pred hcccchHHHHHHHHH-----------------HHHHHHHHHHHHHH-hchhH
Confidence 446667788888888 99999999999988 58884
No 15
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=54.58 E-value=20 Score=21.96 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=14.5
Q ss_pred cccCCcchhhccchhhhhhHHHHhh
Q psy11630 97 TLSGDLATVFDIGGIFGGIAAGLIS 121 (169)
Q Consensus 97 ~~a~~LS~~~DvGaaiggiliG~Is 121 (169)
+.++.|| |+++.++++|.+.
T Consensus 3 ~~~~~ls-----~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 3 PVSRGLT-----GGEIVAVIFGLLL 22 (38)
T ss_dssp SSSTTCC-----HHHHHHHHHHHHH
T ss_pred CCCCCCC-----CCceeeeehHHHH
Confidence 4456777 7778888888664
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.41 E-value=52 Score=20.83 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=6.2
Q ss_pred chhhhhhHHHHh
Q psy11630 109 GGIFGGIAAGLI 120 (169)
Q Consensus 109 GaaiggiliG~I 120 (169)
+++.++.+.|.+
T Consensus 10 ~aIA~gVVgGv~ 21 (44)
T 2l2t_A 10 PLIAAGVIGGLF 21 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred ceEEEeehHHHH
Confidence 455555555543
No 17
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=27.22 E-value=23 Score=22.32 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=12.9
Q ss_pred HHHHHHhhhhcchHHHH
Q psy11630 41 VLLLLLGSLVNGPYALI 57 (169)
Q Consensus 41 ~ll~l~Gffi~GP~~Li 57 (169)
..+.++|.|+||+|.=+
T Consensus 20 ~vi~~~giFfyGsYsGl 36 (40)
T 3arc_J 20 GVIVIVGLFFYGAYAGL 36 (40)
T ss_dssp HHHHHHHHHHHHHSSST
T ss_pred hhhheeeEEEeeccccc
Confidence 44678999999998533
No 18
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.02 E-value=92 Score=19.58 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=6.0
Q ss_pred chhhhhhHHHHh
Q psy11630 109 GGIFGGIAAGLI 120 (169)
Q Consensus 109 GaaiggiliG~I 120 (169)
+++.++++.|.+
T Consensus 11 ~~IA~gVVgGv~ 22 (44)
T 2ks1_B 11 PSIATGMVGALL 22 (44)
T ss_dssp SSSTHHHHHHHH
T ss_pred ceEEeehhHHHH
Confidence 444455555543
Done!