RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11630
         (169 letters)



>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 33/137 (24%)

Query: 25  LFIYQLLGATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSI 84
             +Y +  A + T+ ++ ++++G L+ GP  LI        G H       KA  T    
Sbjct: 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI--------GLHALELAPKKAAGTAAGF 386

Query: 85  IDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGK---------SASVCATML 135
               G +                 G +      G   D  G           + +   +L
Sbjct: 387 TGLFGYLG----------------GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430

Query: 136 VLSIPMKQKGNQEAEQD 152
           ++ +  +++ +++  Q+
Sbjct: 431 IVVMIGEKRRHEQLLQE 447



 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 94  LSNTLSGDLATVFDIGGIFGGIAAGLISD--MTGKSASVCATMLVLSIPM 141
            +   S     +++  GI G +  G +SD    G   +     + L    
Sbjct: 285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.077
 Identities = 33/177 (18%), Positives = 48/177 (27%), Gaps = 78/177 (44%)

Query: 5   GLKPPTSRSKVQRVNHYTTELFIYQLLGATSLTMSIVLLLLLGSLVNGP----------- 53
            L     +  V + N +         L A    + I       SLVNG            
Sbjct: 343 NLTQEQVQDYVNKTNSH---------LPAGK-QVEI-------SLVNGAKNLVVSGPPQS 385

Query: 54  -YALITT--AVSAELGT-------------------------HECLEGNSKALATVTSII 85
            Y L  T     A  G                          H      S  L   + +I
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH------SHLLVPASDLI 439

Query: 86  --DGTGSIASLSNTLSGDLA-TVFDIGGIFGGIAAGLISDMTGKSASVCATMLVLSI 139
             D   +  S +   + D+   V+D    F G      SD+   S S+ +  +V  I
Sbjct: 440 NKDLVKNNVSFN---AKDIQIPVYD---TFDG------SDLRVLSGSI-SERIVDCI 483



 Score = 26.6 bits (58), Expect = 6.5
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 21/62 (33%)

Query: 47   GSLV-----NGPYALITTAVSAELGTHECLEGNSKALATVTSIID--GTGSI--ASLSNT 97
            G LV     N         V+A         G+ +AL TVT++++      I    L  +
Sbjct: 1838 GWLVEIVNYNVENQQY---VAA---------GDLRALDTVTNVLNFIKLQKIDIIELQKS 1885

Query: 98   LS 99
            LS
Sbjct: 1886 LS 1887


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.4 bits (65), Expect = 0.45
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)

Query: 141 MKQKGNQEAEQDYKEHEANPE-----NTIEDKH 168
            ++K  ++ E+  +      E     N I DK 
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0729    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,318,080
Number of extensions: 129964
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 9
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)