RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11630
         (169 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 30.4 bits (67), Expect = 0.11
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 94  LSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKSASVCATMLVLSIPM 141
            S    G   +   I   F     G +SD +     + A +++ +  M
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 103


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 27.0 bits (58), Expect = 1.3
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 30/121 (24%)

Query: 25  LFIYQLLGATSLTMSIVLLLLLGSLVNGPYALITTAVSAELGTHECLEGNSKALATVTSI 84
           + I     ATS    ++L  L    V          ++++                    
Sbjct: 301 VRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF--------------- 345

Query: 85  IDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKS------ASVCATMLVLS 138
              + +I  +             +  IF  + AG + +  G          V     ++S
Sbjct: 346 ---SATIYLVCFCFF------KQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396

Query: 139 I 139
           +
Sbjct: 397 V 397


>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 92

 Score = 24.2 bits (52), Expect = 4.7
 Identities = 8/53 (15%), Positives = 17/53 (32%)

Query: 82  TSIIDGTGSIASLSNTLSGDLATVFDIGGIFGGIAAGLISDMTGKSASVCATM 134
           T +++  G +  +  T+    A   +   I      G    + G   +V    
Sbjct: 3   TGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFD 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 522,955
Number of extensions: 20253
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 4
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)