BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11631
(219 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345481459|ref|XP_001601816.2| PREDICTED: DNA excision repair protein haywire-like isoform 1
[Nasonia vitripennis]
Length = 809
Score = 328 bits (841), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 155/219 (70%), Positives = 185/219 (84%), Gaps = 5/219 (2%)
Query: 2 KYKRKKKEVEDESYVDDPG-EPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K+KR+K++ + + +DD G + + +G+P AAK +VEK D EDE+GAKDYR+QM+LK
Sbjct: 22 KWKRRKEDHDPDYNIDDDGNDDAETEGIPDAAKNDVEKQDHGAIEDEYGAKDYRSQMILK 81
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PD++SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEH+HEYKLTAYSLYAAVS
Sbjct: 82 PDNESRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHVHEYKLTAYSLYAAVS 141
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGK+KLVLKHN+YF+ESPF EVLQKL
Sbjct: 142 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKIKLVLKHNKYFVESPFPEVLQKL 201
Query: 181 LKDPVIQDCRLRRDTEDS----QTLINQADKKLKAPQFG 215
LKDPVIQ+CRLR+ +D+ I K K PQFG
Sbjct: 202 LKDPVIQECRLRKTVDDTAKDKDGFITNVLAKTKVPQFG 240
>gi|345481457|ref|XP_003424374.1| PREDICTED: DNA excision repair protein haywire-like isoform 2
[Nasonia vitripennis]
Length = 802
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/219 (70%), Positives = 185/219 (84%), Gaps = 5/219 (2%)
Query: 2 KYKRKKKEVEDESYVDDPG-EPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K+KR+K++ + + +DD G + + +G+P AAK +VEK D EDE+GAKDYR+QM+LK
Sbjct: 15 KWKRRKEDHDPDYNIDDDGNDDAETEGIPDAAKNDVEKQDHGAIEDEYGAKDYRSQMILK 74
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PD++SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEH+HEYKLTAYSLYAAVS
Sbjct: 75 PDNESRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHVHEYKLTAYSLYAAVS 134
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGK+KLVLKHN+YF+ESPF EVLQKL
Sbjct: 135 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKIKLVLKHNKYFVESPFPEVLQKL 194
Query: 181 LKDPVIQDCRLRRDTEDS----QTLINQADKKLKAPQFG 215
LKDPVIQ+CRLR+ +D+ I K K PQFG
Sbjct: 195 LKDPVIQECRLRKTVDDTAKDKDGFITNVLAKTKVPQFG 233
>gi|350412751|ref|XP_003489749.1| PREDICTED: DNA excision repair protein haywire-like isoform 2
[Bombus impatiens]
Length = 804
Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/216 (73%), Positives = 182/216 (84%), Gaps = 6/216 (2%)
Query: 4 KRKKKEVEDESYVDDPGEPLDED---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K KK++ + E Y DD + LD++ G+P AAK +VEK D EDEFGAKDYR+QM+LK
Sbjct: 24 KWKKRKEDPEEYNDD--DTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILK 81
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PD RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 82 PDCTLRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 141
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKL
Sbjct: 142 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKL 201
Query: 181 LKDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
LKDPVIQ+CRL++ ED + +I K KAPQFG
Sbjct: 202 LKDPVIQECRLKKTIEDEKDEIITNVQSKTKAPQFG 237
>gi|350412749|ref|XP_003489748.1| PREDICTED: DNA excision repair protein haywire-like isoform 1
[Bombus impatiens]
Length = 795
Score = 325 bits (833), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 159/216 (73%), Positives = 182/216 (84%), Gaps = 6/216 (2%)
Query: 4 KRKKKEVEDESYVDDPGEPLDED---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K KK++ + E Y DD + LD++ G+P AAK +VEK D EDEFGAKDYR+QM+LK
Sbjct: 15 KWKKRKEDPEEYNDD--DTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILK 72
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PD RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 73 PDCTLRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 132
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKL
Sbjct: 133 VGLQTHDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKL 192
Query: 181 LKDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
LKDPVIQ+CRL++ ED + +I K KAPQFG
Sbjct: 193 LKDPVIQECRLKKTIEDEKDEIITNVQSKTKAPQFG 228
>gi|66519335|ref|XP_624125.1| PREDICTED: DNA excision repair protein haywire [Apis mellifera]
Length = 795
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 155/212 (73%), Positives = 179/212 (84%), Gaps = 1/212 (0%)
Query: 5 RKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 64
+K+KE +E DD + + +G+P AAK +VEK D EDEFGAKDYR+QM+LKPD
Sbjct: 17 KKRKEDPEEYNEDDTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCA 76
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+
Sbjct: 77 LRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQ 136
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKLLKDP
Sbjct: 137 THDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKLLKDP 196
Query: 185 VIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
VIQ+CRL+++ ED + +I K K PQFG
Sbjct: 197 VIQECRLKKNVEDDKDEIITNVQNKTKTPQFG 228
>gi|380015695|ref|XP_003691833.1| PREDICTED: DNA excision repair protein haywire-like isoform 2 [Apis
florea]
Length = 800
Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/212 (72%), Positives = 179/212 (84%), Gaps = 1/212 (0%)
Query: 5 RKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 64
+K+KE +E DD + + +G+P AAK +VEK D EDEFGAKDYR+QM+LKPD
Sbjct: 22 KKRKEDPEEYNEDDTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCA 81
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+
Sbjct: 82 LRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQ 141
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQ+LLKDP
Sbjct: 142 THDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQRLLKDP 201
Query: 185 VIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
VIQ+CRL+++ ED + +I K K PQFG
Sbjct: 202 VIQECRLKKNIEDDKDEIITNVQNKTKTPQFG 233
>gi|380015693|ref|XP_003691832.1| PREDICTED: DNA excision repair protein haywire-like isoform 1 [Apis
florea]
Length = 795
Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/212 (72%), Positives = 179/212 (84%), Gaps = 1/212 (0%)
Query: 5 RKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 64
+K+KE +E DD + + +G+P AAK +VEK D EDEFGAKDYR+QM+LKPD
Sbjct: 17 KKRKEDPEEYNEDDTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCA 76
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+
Sbjct: 77 LRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQ 136
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
THDIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQ+LLKDP
Sbjct: 137 THDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQRLLKDP 196
Query: 185 VIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
VIQ+CRL+++ ED + +I K K PQFG
Sbjct: 197 VIQECRLKKNIEDDKDEIITNVQNKTKTPQFG 228
>gi|340720531|ref|XP_003398689.1| PREDICTED: DNA excision repair protein haywire-like [Bombus
terrestris]
Length = 795
Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/217 (73%), Positives = 182/217 (83%), Gaps = 6/217 (2%)
Query: 4 KRKKKEVEDESYVDDPGEPLDED---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K KK++ + E Y DD + LD++ G+P AAK +VEK D EDEFGAKDYR+QM+LK
Sbjct: 15 KWKKRKEDPEEYNDD--DTLDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILK 72
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
D RPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 73 SDCTLRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 132
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDIIEYLKRLSKTS+PDGIVEFI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKL
Sbjct: 133 VGLQTHDIIEYLKRLSKTSIPDGIVEFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKL 192
Query: 181 LKDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFGL 216
LKDPVIQ+CRL++ ED + +I K KAPQFG+
Sbjct: 193 LKDPVIQECRLKKSIEDEKDEIITNVQSKTKAPQFGV 229
>gi|307169923|gb|EFN62432.1| DNA excision repair protein haywire [Camponotus floridanus]
Length = 805
Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 161/219 (73%), Positives = 179/219 (81%), Gaps = 6/219 (2%)
Query: 2 KYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 61
K+K++K E D+ DD + + DGVP AAK +VEK D EDEFGAKDYR QM+LKP
Sbjct: 22 KWKKRKDEY-DKYNDDDSIDSNEADGVPDAAKTDVEKQDECATEDEFGAKDYRLQMILKP 80
Query: 62 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
D+ SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPE IHEYKLTAYSLYAAVSV
Sbjct: 81 DNTSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEFIHEYKLTAYSLYAAVSV 140
Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
GL+T DIIEYLKRLSKTSVPDGI+EFI LCTLSYGKVKLVLKHN+YFIESPF EVLQKLL
Sbjct: 141 GLQTEDIIEYLKRLSKTSVPDGIIEFIKLCTLSYGKVKLVLKHNKYFIESPFPEVLQKLL 200
Query: 182 KDPVIQDCRLRRD---TEDSQT--LINQADKKLKAPQFG 215
KDPVIQ+CRLR TED+ ++ K K PQFG
Sbjct: 201 KDPVIQECRLRTRITPTEDTDVDDIVTNVQAKSKVPQFG 239
>gi|383849852|ref|XP_003700549.1| PREDICTED: DNA excision repair protein haywire-like [Megachile
rotundata]
Length = 788
Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 182/215 (84%), Gaps = 3/215 (1%)
Query: 2 KYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 61
K+K++K+++E+ + DD +E GVP AAK +VEK D EDEFGAKDYR+QM+LKP
Sbjct: 15 KWKKRKEDLEE--FNDDDSLDDNEAGVPDAAKNDVEKQDETALEDEFGAKDYRSQMILKP 72
Query: 62 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
D SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSV
Sbjct: 73 DCASRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSV 132
Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
GL+THDIIEYLKRLSKTS+PDGI++FI LCTLSYGKVKLVLKHN+YF+ESP+ EVLQKLL
Sbjct: 133 GLQTHDIIEYLKRLSKTSIPDGIIKFIKLCTLSYGKVKLVLKHNKYFVESPYPEVLQKLL 192
Query: 182 KDPVIQDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
KDP IQ+CRL+++ E+ + +I K K QFG
Sbjct: 193 KDPKIQECRLKKNVENEKDEIITNVQSKTKTLQFG 227
>gi|332022982|gb|EGI63247.1| DNA excision repair protein haywire [Acromyrmex echinatior]
Length = 793
Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/193 (77%), Positives = 168/193 (87%), Gaps = 1/193 (0%)
Query: 24 DEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
+ DG+P AAK +VEK D EDEFGAKDYR+QM+LK D SRPLWVAPNGHIFLESFSP
Sbjct: 34 ETDGIPDAAKNDVEKQDECAIEDEFGAKDYRSQMILKSDCSSRPLWVAPNGHIFLESFSP 93
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
VY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+T DIIEYLKRLSKTS+PDG
Sbjct: 94 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTQDIIEYLKRLSKTSIPDG 153
Query: 144 IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED-SQTLI 202
I+EFI LCTLSYGKVKLVLKHN+YFIESPF EVLQ+LLKDPVIQ+CRLR+ ED + ++
Sbjct: 154 IIEFIKLCTLSYGKVKLVLKHNKYFIESPFPEVLQRLLKDPVIQECRLRKLVEDETNDIV 213
Query: 203 NQADKKLKAPQFG 215
K+K PQFG
Sbjct: 214 TNIQAKIKIPQFG 226
>gi|170041186|ref|XP_001848354.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
gi|167864719|gb|EDS28102.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
Length = 810
Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/219 (71%), Positives = 175/219 (79%), Gaps = 7/219 (3%)
Query: 4 KRKKKEVEDESYV----DDPGEPLDEDG---VPVAAKKNVEKDDAAVPEDEFGAKDYRAQ 56
K KK+ ED++Y DD +D G VP AA KN EK+D + EDE+GAKDYR+Q
Sbjct: 30 KWKKRRPEDDAYSSLANDDDDSSMDGAGGEFVPGAASKNAEKNDDGIGEDEYGAKDYRSQ 89
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LKPD+ SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLY
Sbjct: 90 MQLKPDNASRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLY 149
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+THDIIEYLKRLSK +VPDGI EFI LCTLSYGKVKLVLKHN+YF+ESP EV
Sbjct: 150 AAVSVGLQTHDIIEYLKRLSKCTVPDGIQEFIRLCTLSYGKVKLVLKHNKYFVESPHPEV 209
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
LQKLLKDPVIQ CRLRR E+ + I Q +K FG
Sbjct: 210 LQKLLKDPVIQSCRLRRTNEEGEGFITQTMEKKGITAFG 248
>gi|157135000|ref|XP_001663396.1| rad25/xp-b DNA repair helicase [Aedes aegypti]
gi|108870345|gb|EAT34570.1| AAEL013205-PA [Aedes aegypti]
Length = 810
Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/217 (72%), Positives = 173/217 (79%), Gaps = 7/217 (3%)
Query: 6 KKKEVEDESYV----DDPGEPLDEDG---VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 58
KK+ EDE+Y DD LD G VP AA KN EK D + EDE+GAKDYR+QM
Sbjct: 30 KKRRPEDEAYSAFANDDDDSNLDAAGGEFVPEAASKNAEKIDEGIQEDEYGAKDYRSQME 89
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPD+ SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAA
Sbjct: 90 LKPDNASRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAA 149
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGL+THDIIEYLKRLSKT+VP+GI EFI LCTLSYGKVKLVLKHN+YF+ESP EVLQ
Sbjct: 150 VSVGLQTHDIIEYLKRLSKTTVPEGIQEFIRLCTLSYGKVKLVLKHNKYFVESPHPEVLQ 209
Query: 179 KLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
KLLKDPVIQ CRLRR E+ I Q +K FG
Sbjct: 210 KLLKDPVIQSCRLRRTNEEGDGFITQTMEKKAITAFG 246
>gi|157134194|ref|XP_001663182.1| rad25/xp-b DNA repair helicase [Aedes aegypti]
gi|108870577|gb|EAT34802.1| AAEL012991-PA [Aedes aegypti]
Length = 810
Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/217 (72%), Positives = 173/217 (79%), Gaps = 7/217 (3%)
Query: 6 KKKEVEDESYV----DDPGEPLDEDG---VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 58
KK+ EDE+Y DD LD G VP AA KN EK D + EDE+GAKDYR+QM
Sbjct: 30 KKRRPEDEAYSAFANDDDDSNLDAAGGEFVPEAASKNAEKIDEGIQEDEYGAKDYRSQME 89
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPD+ SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAA
Sbjct: 90 LKPDNASRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAA 149
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGL+THDIIEYLKRLSKT+VP+GI EFI LCTLSYGKVKLVLKHN+YF+ESP EVLQ
Sbjct: 150 VSVGLQTHDIIEYLKRLSKTTVPEGIQEFIRLCTLSYGKVKLVLKHNKYFVESPHPEVLQ 209
Query: 179 KLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
KLLKDPVIQ CRLRR ++ I Q +K FG
Sbjct: 210 KLLKDPVIQSCRLRRTNDEGDGFITQTMEKKAITAFG 246
>gi|91078404|ref|XP_974506.1| PREDICTED: similar to rad25/xp-b DNA repair helicase [Tribolium
castaneum]
gi|270003880|gb|EFA00328.1| hypothetical protein TcasGA2_TC003167 [Tribolium castaneum]
Length = 778
Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/189 (77%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Query: 27 GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYR 86
VP AA ++ EK+D +V EDEFGAKDYR+QM+LKPD+ SRPLWVAPNGHIFLESFSPVY+
Sbjct: 39 AVPGAAARDAEKNDQSVQEDEFGAKDYRSQMILKPDNTSRPLWVAPNGHIFLESFSPVYK 98
Query: 87 HAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVE 146
HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+T+DIIEYL RLSKTS+PDGIVE
Sbjct: 99 HAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTNDIIEYLNRLSKTSIPDGIVE 158
Query: 147 FINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQAD 206
FI LCTLSYGKVKLVLKHN+YF+ESP E+LQKLLKDPVIQ+CRLRR+ E+ I Q
Sbjct: 159 FIKLCTLSYGKVKLVLKHNKYFVESPHPEILQKLLKDPVIQECRLRRN-EEGDEFITQVQ 217
Query: 207 KKLKAPQFG 215
+K P FG
Sbjct: 218 EKKNIPSFG 226
>gi|312383928|gb|EFR28807.1| hypothetical protein AND_02780 [Anopheles darlingi]
Length = 834
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/198 (76%), Positives = 170/198 (85%), Gaps = 7/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDE-DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 59
KK+ EDE+Y DD E D VP AA KN EK+D A+ EDE+GAKDYR+QM L
Sbjct: 48 KKRRAEDEAYAAFAEDDDSSSSFGESDFVPDAATKNAEKNDDAIQEDEYGAKDYRSQMEL 107
Query: 60 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
KPD+ SRPLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAV
Sbjct: 108 KPDNTSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAV 167
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGL+THDI+EY+KRLSKT++P+GI+EFI LCTLSYGKVKLVLKHN+YF+ESP EVLQK
Sbjct: 168 SVGLQTHDIVEYMKRLSKTTIPEGIIEFIRLCTLSYGKVKLVLKHNKYFVESPHPEVLQK 227
Query: 180 LLKDPVIQDCRLRRDTED 197
LLKDPVIQ CRLRR TED
Sbjct: 228 LLKDPVIQSCRLRR-TED 244
>gi|195129211|ref|XP_002009052.1| GI11476 [Drosophila mojavensis]
gi|193920661|gb|EDW19528.1| GI11476 [Drosophila mojavensis]
Length = 430
Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 174/216 (80%), Gaps = 8/216 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDE-DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 59
KK+ EDE+Y +D + + E DGVP AA KN E +D + DE+GAKDYRAQM L
Sbjct: 19 KKRRAEDEAYTQLVDDNDSQDCVSEADGVPGAASKNAETNDENINTDEYGAKDYRAQMQL 78
Query: 60 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
+PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAV
Sbjct: 79 RPDHANRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAV 138
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGL+THDIIEYLKRLSKT++P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQK
Sbjct: 139 SVGLQTHDIIEYLKRLSKTTIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQK 198
Query: 180 LLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
LLKDPVIQ+CRL R+ + + I QFG
Sbjct: 199 LLKDPVIQNCRLIRN--EGEGFIQGTMDSKAITQFG 232
>gi|195017332|ref|XP_001984577.1| GH14950 [Drosophila grimshawi]
gi|193898059|gb|EDV96925.1| GH14950 [Drosophila grimshawi]
Length = 806
Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 152/216 (70%), Positives = 173/216 (80%), Gaps = 8/216 (3%)
Query: 6 KKKEVEDESYVD--DPGEPLDE----DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 59
KK+ EDE+Y D + +D DGVP AA KN E +D + DE+GAKDYR+QM L
Sbjct: 19 KKRRAEDEAYTQLVDDNDSMDNASESDGVPGAASKNAETNDENINTDEYGAKDYRSQMQL 78
Query: 60 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
+PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAV
Sbjct: 79 RPDHANRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAV 138
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQK
Sbjct: 139 SVGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQK 198
Query: 180 LLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
LLKDPVIQ CRL R +E + D K QFG
Sbjct: 199 LLKDPVIQKCRLIR-SEGEGFIQGTVDSK-AITQFG 232
>gi|195171461|ref|XP_002026524.1| GL15471 [Drosophila persimilis]
gi|198465827|ref|XP_001353779.2| GA20769 [Drosophila pseudoobscura pseudoobscura]
gi|194111430|gb|EDW33473.1| GL15471 [Drosophila persimilis]
gi|198150332|gb|EAL29513.2| GA20769 [Drosophila pseudoobscura pseudoobscura]
Length = 797
Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/215 (69%), Positives = 172/215 (80%), Gaps = 7/215 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + DG+P AA KN E +D V DE+GAKDYR QM L+
Sbjct: 19 KKRRAEDEAFTQLVEDNDSLDATESDGIPGAASKNAETNDEQVNTDEYGAKDYRGQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
LKDPVIQ CRL R +E + D K QFG
Sbjct: 199 LKDPVIQKCRLIR-SEGEGFIQGTVDSK-AITQFG 231
>gi|194751011|ref|XP_001957820.1| GF10598 [Drosophila ananassae]
gi|190625102|gb|EDV40626.1| GF10598 [Drosophila ananassae]
Length = 803
Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 174/221 (78%), Gaps = 8/221 (3%)
Query: 1 KKYKRKKKEVE------DESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYR 54
+K+ +K++E E DES +D + + DGVP AA KN E +D + DE+GAKDYR
Sbjct: 15 EKFAKKRREDEAYAQLVDESETNDSVDATESDGVPGAASKNAETNDEQINTDEYGAKDYR 74
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
AQM L+ DH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYS
Sbjct: 75 AQMQLRQDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYS 134
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGL+THDIIEYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP
Sbjct: 135 LYAAVSVGLQTHDIIEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHP 194
Query: 175 EVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
EVLQKLLKDPVIQ CRL R + + I QFG
Sbjct: 195 EVLQKLLKDPVIQKCRLIRS--EGEGFIQGTMDGKAITQFG 233
>gi|194868422|ref|XP_001972288.1| GG15440 [Drosophila erecta]
gi|190654071|gb|EDV51314.1| GG15440 [Drosophila erecta]
Length = 802
Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 146/198 (73%), Positives = 168/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + DGVP AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESDGVPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|195326581|ref|XP_002030004.1| GM25215 [Drosophila sechellia]
gi|194118947|gb|EDW40990.1| GM25215 [Drosophila sechellia]
Length = 802
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/198 (73%), Positives = 168/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + DG+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESDGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|158300446|ref|XP_320364.4| AGAP012169-PA [Anopheles gambiae str. PEST]
gi|157013163|gb|EAA00171.4| AGAP012169-PA [Anopheles gambiae str. PEST]
Length = 812
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/175 (81%), Positives = 160/175 (91%)
Query: 24 DEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
+ D VP AA KN EK+D A+ EDE+GAKDYR+QM LKPD++SRPLWVAPNGHIFLESFSP
Sbjct: 52 ESDFVPDAATKNAEKNDDAIQEDEYGAKDYRSQMELKPDNESRPLWVAPNGHIFLESFSP 111
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
VY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+THDI+EYLKRLSKT++P+G
Sbjct: 112 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTHDIVEYLKRLSKTTIPEG 171
Query: 144 IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
IVEFI LCTLSYGKVKLVLKHN+YF+ESP EVLQKLLKDPVIQ CRLRR E+
Sbjct: 172 IVEFIRLCTLSYGKVKLVLKHNKYFVESPHPEVLQKLLKDPVIQSCRLRRTEEEG 226
>gi|11079|emb|CAA48386.1| ERCC3 [Drosophila melanogaster]
gi|260979|gb|AAA12421.1| xeroderma pigmentosum complementation-group B correcting gene
homolog [Drosophila melanogaster]
Length = 802
Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 168/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|15292261|gb|AAK93399.1| LD44022p [Drosophila melanogaster]
Length = 798
Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 168/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|24662247|ref|NP_524020.2| haywire, isoform A [Drosophila melanogaster]
gi|221331068|ref|NP_001137931.1| haywire, isoform B [Drosophila melanogaster]
gi|68068031|sp|Q02870.2|ERCC3_DROME RecName: Full=DNA excision repair protein haywire; AltName:
Full=ATP-dependent DNA helicase hay; AltName:
Full=ERCC-3 homolog protein; AltName: Full=ERCC3Dm
gi|7294816|gb|AAF50150.1| haywire, isoform A [Drosophila melanogaster]
gi|94400453|gb|ABF17890.1| FI01118p [Drosophila melanogaster]
gi|220902549|gb|ACL83286.1| haywire, isoform B [Drosophila melanogaster]
Length = 798
Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 168/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|904101|gb|AAA74931.1| helicase [Drosophila melanogaster]
Length = 801
Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 168/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|242005969|ref|XP_002423832.1| DNA excision repair protein haywire, putative [Pediculus humanus
corporis]
gi|212507048|gb|EEB11094.1| DNA excision repair protein haywire, putative [Pediculus humanus
corporis]
Length = 794
Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 147/194 (75%), Positives = 168/194 (86%), Gaps = 2/194 (1%)
Query: 12 DESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVA 71
DE ++DD + + +GVP AA K+VEKD A EDEFGAKDYR+QMVLK D+K RPLWVA
Sbjct: 25 DEEFIDDLADVQEGEGVPEAATKDVEKDTKA-DEDEFGAKDYRSQMVLKTDNKWRPLWVA 83
Query: 72 PNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEY 131
PNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+T DIIE+
Sbjct: 84 PNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTEDIIEF 143
Query: 132 LKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
L +LSK S+PDGI EFI LCTLSYGKVKLVLKHNRYF+ESPF +VLQKLLKDPVIQ+CRL
Sbjct: 144 LSKLSKCSIPDGIKEFIKLCTLSYGKVKLVLKHNRYFVESPFPDVLQKLLKDPVIQECRL 203
Query: 192 RRDTEDSQTLINQA 205
+R E+ +TL +
Sbjct: 204 KRTVEN-ETLTKEG 216
>gi|195378160|ref|XP_002047852.1| GJ13670 [Drosophila virilis]
gi|194155010|gb|EDW70194.1| GJ13670 [Drosophila virilis]
Length = 809
Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 147/216 (68%), Positives = 169/216 (78%), Gaps = 8/216 (3%)
Query: 6 KKKEVEDESYV------DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 59
KK+ EDE++ D + DGVP AA KN E +D + DE+GAKDYR+QM L
Sbjct: 19 KKRRAEDEAFTQLVEDNDSMDNASESDGVPGAASKNAETNDENINTDEYGAKDYRSQMQL 78
Query: 60 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
+PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAV
Sbjct: 79 RPDHANRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAV 138
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGL+THDI+EYLKRLSKT++P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQK
Sbjct: 139 SVGLQTHDIVEYLKRLSKTTIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQK 198
Query: 180 LLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
LLKDPVIQ CRL R + + I QFG
Sbjct: 199 LLKDPVIQKCRLIRS--EGEGFIQGTMDGKAITQFG 232
>gi|195493190|ref|XP_002094310.1| GE21750 [Drosophila yakuba]
gi|194180411|gb|EDW94022.1| GE21750 [Drosophila yakuba]
Length = 802
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/198 (73%), Positives = 167/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + DGVP AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESDGVPGAASKNAETNDDQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
DH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 QDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|195589302|ref|XP_002084391.1| GD14248 [Drosophila simulans]
gi|194196400|gb|EDX09976.1| GD14248 [Drosophila simulans]
Length = 802
Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/198 (72%), Positives = 167/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
DH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 TDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>gi|195442635|ref|XP_002069058.1| GK12273 [Drosophila willistoni]
gi|194165143|gb|EDW80044.1| GK12273 [Drosophila willistoni]
Length = 804
Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/216 (68%), Positives = 172/216 (79%), Gaps = 8/216 (3%)
Query: 6 KKKEVEDESYV------DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 59
KK+ EDE++ +D + + +GVP AA KN E +D + DE+GAKDYR+QM L
Sbjct: 19 KKRRAEDEAFTQLVEMENDSNDAPEAEGVPGAASKNAEANDDNIDTDEYGAKDYRSQMQL 78
Query: 60 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
+ DH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAV
Sbjct: 79 RQDHSNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAV 138
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGL+THDIIEYLKRLSK ++P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQK
Sbjct: 139 SVGLQTHDIIEYLKRLSKATIPEGIIEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQK 198
Query: 180 LLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
LLKDPVIQ CRL R+ E + + D K QFG
Sbjct: 199 LLKDPVIQKCRLIRN-EGEEFIQGTMDGK-AITQFG 232
>gi|241779174|ref|XP_002399857.1| rad25/xp-B DNA repair helicase, putative [Ixodes scapularis]
gi|215508536|gb|EEC17990.1| rad25/xp-B DNA repair helicase, putative [Ixodes scapularis]
Length = 782
Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/196 (72%), Positives = 167/196 (85%), Gaps = 9/196 (4%)
Query: 5 RKKKEVEDES---YVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 61
RKK ++E+ + Y +D G + DGVP AA + + + A EDEFGAKDYR+QM L+P
Sbjct: 14 RKKADIEEATEDLYGEDDG---NGDGVPAAASQKLSE---ASVEDEFGAKDYRSQMQLRP 67
Query: 62 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
DH SRPLWVA +GH+FLE+FSPVY+HAHDFLIAI+EPVCRP HIHEYKLT+YSLYAAVSV
Sbjct: 68 DHSSRPLWVAADGHVFLEAFSPVYKHAHDFLIAISEPVCRPHHIHEYKLTSYSLYAAVSV 127
Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
GL+T DIIEYL+RLSKTS+PDGI+EFI LCT+SYGKVKLVLKHNRYF+ESPF EVLQKLL
Sbjct: 128 GLQTQDIIEYLRRLSKTSIPDGIIEFIKLCTVSYGKVKLVLKHNRYFVESPFPEVLQKLL 187
Query: 182 KDPVIQDCRLRRDTED 197
KDPVIQ CRLRRD ++
Sbjct: 188 KDPVIQSCRLRRDVDN 203
>gi|321473939|gb|EFX84905.1| hypothetical protein DAPPUDRAFT_300803 [Daphnia pulex]
Length = 794
Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/210 (71%), Positives = 171/210 (81%), Gaps = 5/210 (2%)
Query: 9 EVEDESYVDDPGEP--LDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 66
+ EDES D+ G P + +GVP AAK +E + EDE+GAKDYR + LKPDHKSR
Sbjct: 30 DFEDESAYDE-GIPDGNEAEGVPEAAKHFIEVEGERQGEDEYGAKDYR-DLQLKPDHKSR 87
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PLWVAPNGHIFLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLT+YSLYAAVSVGL+TH
Sbjct: 88 PLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTSYSLYAAVSVGLQTH 147
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
DIIEYLKRLSKT+VPDGIV+FI + TLSYGKVKLVLKHNRYF+ES + +V+QKLLKDPVI
Sbjct: 148 DIIEYLKRLSKTAVPDGIVDFIKISTLSYGKVKLVLKHNRYFVESQYPDVIQKLLKDPVI 207
Query: 187 QDCRLRRDTEDSQ-TLINQADKKLKAPQFG 215
Q+CRLR E S LI Q K + QFG
Sbjct: 208 QECRLRHSVESSTDGLITQVQSKATSIQFG 237
>gi|328697792|ref|XP_001950547.2| PREDICTED: DNA excision repair protein haywire-like [Acyrthosiphon
pisum]
Length = 750
Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 142/184 (77%), Positives = 160/184 (86%), Gaps = 2/184 (1%)
Query: 24 DEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
+E+G+P AAKKN E +V EDEFGAKDYR+QM LK DH SRPLWVAP+GHIFLES+SP
Sbjct: 13 EEEGLPSAAKKNAETAINSV-EDEFGAKDYRSQMNLKTDHASRPLWVAPDGHIFLESYSP 71
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
VYRHAHDF+IAIAEPVCRP H+HEYKLTAYSLYAAVSVGLET+DIIEYLKRLSKTS+PDG
Sbjct: 72 VYRHAHDFMIAIAEPVCRPTHLHEYKLTAYSLYAAVSVGLETNDIIEYLKRLSKTSIPDG 131
Query: 144 IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLIN 203
I+EFI +CTLSYGKVKLVLKHNRYFIES ++LQKLLKDPVI CRL+R ED+ LI
Sbjct: 132 IIEFITVCTLSYGKVKLVLKHNRYFIESQHPDILQKLLKDPVIGSCRLKR-LEDTDALIT 190
Query: 204 QADK 207
+ K
Sbjct: 191 EEQK 194
>gi|357619261|gb|EHJ71905.1| haywire, isoform A [Danaus plexippus]
Length = 1047
Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/194 (75%), Positives = 166/194 (85%), Gaps = 4/194 (2%)
Query: 6 KKKEVEDESYVD--DPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 63
KKK+V++E +D D P + GVP AA ++ EK+D VPEDEFGAKDYR QM LKPD+
Sbjct: 21 KKKKVDEEVTIDLVDDDNP-ESSGVPGAALQDAEKNDQ-VPEDEFGAKDYRNQMELKPDN 78
Query: 64 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
SRPLWVAPNGHIFLESFSPVY+HAHDFLIAIAEPV RP+HIHEYKLTAYSLYAAVSVGL
Sbjct: 79 ASRPLWVAPNGHIFLESFSPVYKHAHDFLIAIAEPVSRPQHIHEYKLTAYSLYAAVSVGL 138
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
+T+DIIEYL+RLSK +VP GI+EFI LCTLSYGKVKLVLKHNRY +ES +VLQKLLKD
Sbjct: 139 QTNDIIEYLQRLSKCNVPAGIIEFITLCTLSYGKVKLVLKHNRYLVESKHVDVLQKLLKD 198
Query: 184 PVIQDCRLRRDTED 197
PVIQ CRLRRD ++
Sbjct: 199 PVIQQCRLRRDGDE 212
>gi|427792675|gb|JAA61789.1| Putative rna polymer, partial [Rhipicephalus pulchellus]
Length = 781
Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/174 (78%), Positives = 155/174 (89%), Gaps = 2/174 (1%)
Query: 28 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 87
VP AA + + D +V EDEFGAKDYR+QM L+PDH SRPLWVA +GH+FLE+FSPVY+H
Sbjct: 38 VPAAASQKLTTD--SVVEDEFGAKDYRSQMELRPDHASRPLWVAADGHVFLEAFSPVYKH 95
Query: 88 AHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEF 147
AHDFLIAI+EPVCRP+HIHEYKLT+YSLYAAVSVGL+T DIIEYL+RLSKTS+PDGIVEF
Sbjct: 96 AHDFLIAISEPVCRPQHIHEYKLTSYSLYAAVSVGLQTQDIIEYLRRLSKTSIPDGIVEF 155
Query: 148 INLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTL 201
I LCT+SYGKVKLVLKHNRYF+ESPF +VLQKLLKDPVIQ CRLRRD E+ L
Sbjct: 156 IKLCTVSYGKVKLVLKHNRYFVESPFPDVLQKLLKDPVIQACRLRRDAENDTDL 209
>gi|390346293|ref|XP_794167.3| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like, partial [Strongylocentrotus purpuratus]
Length = 757
Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 142/197 (72%), Positives = 163/197 (82%), Gaps = 6/197 (3%)
Query: 1 KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KKY+ + E+E+ DD P D +P A + VE D A EDEFGAKDYR QM LK
Sbjct: 15 KKYRTESPELEN----DDTQGP-DGTYIPKNASRQVE-DQEAGDEDEFGAKDYRGQMELK 68
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
DH SRPLW+AP+GHIFLESFSPVY+HAHDFLIAI+EPVCRPE+IHEYKLTAYSLYAAVS
Sbjct: 69 KDHGSRPLWLAPDGHIFLESFSPVYKHAHDFLIAISEPVCRPENIHEYKLTAYSLYAAVS 128
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+T DIIEYL+RLSKT++P+GIVEFI LCTLSYGKVKLVLKHNRYF+ESPF +VLQKL
Sbjct: 129 VGLQTSDIIEYLRRLSKTTIPNGIVEFIKLCTLSYGKVKLVLKHNRYFVESPFPDVLQKL 188
Query: 181 LKDPVIQDCRLRRDTED 197
LKD V+Q CRLR D ++
Sbjct: 189 LKDSVVQQCRLRSDVDE 205
>gi|391336830|ref|XP_003742781.1| PREDICTED: DNA excision repair protein haywire-like [Metaseiulus
occidentalis]
Length = 775
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/185 (72%), Positives = 157/185 (84%), Gaps = 3/185 (1%)
Query: 17 DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHI 76
+D GE DGVP+AAKK +E EDE+GAKDYR QM+LKPDH SRPLWV+ +GHI
Sbjct: 34 EDEGEQFSVDGVPIAAKKQLEDKSC---EDEYGAKDYRDQMILKPDHASRPLWVSADGHI 90
Query: 77 FLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLS 136
FLE+FSPVY+HAHDFLIAIAEPVCRPE IHEYKLT+YSLYAAVSVGL+T DIIEYL+RLS
Sbjct: 91 FLEAFSPVYKHAHDFLIAIAEPVCRPEFIHEYKLTSYSLYAAVSVGLQTDDIIEYLRRLS 150
Query: 137 KTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
KTS+P+GI++FI +CT+SYGKVKLVLK NRYF+ES EVLQKLLKDPVIQ+CRL+R
Sbjct: 151 KTSIPEGILDFIRICTVSYGKVKLVLKQNRYFVESNHPEVLQKLLKDPVIQNCRLKRSEG 210
Query: 197 DSQTL 201
+ + L
Sbjct: 211 EVELL 215
>gi|260821664|ref|XP_002606152.1| hypothetical protein BRAFLDRAFT_126483 [Branchiostoma floridae]
gi|229291491|gb|EEN62162.1| hypothetical protein BRAFLDRAFT_126483 [Branchiostoma floridae]
Length = 798
Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 136/195 (69%), Positives = 154/195 (78%)
Query: 4 KRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 63
KRK + ++ Y D L+ G VAA + D++ DE+GAKDYR M LK DH
Sbjct: 17 KRKHQSDSEDDYEDSRDSELNGGGAEVAAIATRQTDESTGDTDEYGAKDYRKIMELKSDH 76
Query: 64 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
SRPLWVAPNGHIFLE+FSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL
Sbjct: 77 ASRPLWVAPNGHIFLEAFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGL 136
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
+T+DIIEYLKRLSKT+VP GI EFI LCT+SYGKVKLVLKHNRYF+ES F +VLQ LLKD
Sbjct: 137 QTNDIIEYLKRLSKTTVPSGIEEFIKLCTVSYGKVKLVLKHNRYFVESSFPDVLQTLLKD 196
Query: 184 PVIQDCRLRRDTEDS 198
IQDCRLR E+
Sbjct: 197 SGIQDCRLRHSIEEG 211
>gi|291225864|ref|XP_002732918.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 3-like [Saccoglossus
kowalevskii]
Length = 824
Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 161/200 (80%), Gaps = 6/200 (3%)
Query: 2 KYKRKKKEVEDESYVDDPGEPLDEDG----VPVAAKKNVEKDDAAVPEDEFGAKDYRAQM 57
K ++ KK DE ++ L +G +P AA + V +D V EDEFGAKDYR QM
Sbjct: 42 KTRKSKKSKIDEPQWEEDDSSLGPEGATSDLPGAASRGVTEDK--VLEDEFGAKDYRDQM 99
Query: 58 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH SRPLW+APNG+IFLESFSPVY+HA DFLIAIAEPVCRP +IHEY+LTAYSLYA
Sbjct: 100 KLKTDHSSRPLWLAPNGYIFLESFSPVYKHARDFLIAIAEPVCRPRNIHEYRLTAYSLYA 159
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T+DIIEYL+RLSKTS+PDGI+EFI LCTLSYGK+KLVLKHNRYF+ES +V+
Sbjct: 160 AVSVGLQTNDIIEYLRRLSKTSLPDGIIEFIRLCTLSYGKLKLVLKHNRYFVESRHPDVI 219
Query: 178 QKLLKDPVIQDCRLRRDTED 197
QKLLKD VIQ+CRLRRD D
Sbjct: 220 QKLLKDHVIQECRLRRDIND 239
>gi|432851969|ref|XP_004067131.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Oryzias latipes]
Length = 783
Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 127/180 (70%), Positives = 151/180 (83%), Gaps = 2/180 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 33 QEAVPAAAGKQV--DESGTKLDEYGAKDYRVQMLLKNDHSSRPLWVAPDGHIFLEAFSPV 90
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI+EYL++LSKTSVPDGI
Sbjct: 91 YKYAQDFLVAIAEPVCRPNHIHEYKLTAYSLYAAVSVGLQTSDIVEYLQKLSKTSVPDGI 150
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
V+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI+DCRLR LI +
Sbjct: 151 VQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDSVIRDCRLRTAGGADSELITE 210
>gi|348516499|ref|XP_003445776.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 2 [Oreochromis niloticus]
Length = 784
Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 124/168 (73%), Positives = 150/168 (89%), Gaps = 2/168 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ +P AA K V D+++ DE+GAKDYRAQM+LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 34 QEAIPAAAGKQV--DESSTKLDEYGAKDYRAQMLLKNDHSSRPLWVAPDGHIFLEAFSPV 91
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI+EYL++LSKTSVPDGI
Sbjct: 92 YKYAQDFLVAIAEPVCRPNHIHEYKLTAYSLYAAVSVGLQTSDIVEYLQKLSKTSVPDGI 151
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
V+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI++CRLR
Sbjct: 152 VQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDNVIRECRLR 199
>gi|348516497|ref|XP_003445775.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 1 [Oreochromis niloticus]
Length = 783
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 124/168 (73%), Positives = 150/168 (89%), Gaps = 2/168 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ +P AA K V D+++ DE+GAKDYRAQM+LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 33 QEAIPAAAGKQV--DESSTKLDEYGAKDYRAQMLLKNDHSSRPLWVAPDGHIFLEAFSPV 90
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI+EYL++LSKTSVPDGI
Sbjct: 91 YKYAQDFLVAIAEPVCRPNHIHEYKLTAYSLYAAVSVGLQTSDIVEYLQKLSKTSVPDGI 150
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
V+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI++CRLR
Sbjct: 151 VQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDNVIRECRLR 198
>gi|327282808|ref|XP_003226134.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Anolis carolinensis]
Length = 781
Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/205 (66%), Positives = 162/205 (79%), Gaps = 3/205 (1%)
Query: 1 KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK K++ E E+E D PG ++ VP AA K VE V DE+GAKDYR+QM LK
Sbjct: 10 KKSKKRHYEEENEEEYDIPGRD-SQEAVPSAAGKQVEVSGKKV--DEYGAKDYRSQMQLK 66
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVS
Sbjct: 67 DDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPSHIHEYKLTAYSLYAAVS 126
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+T+DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES EV+Q+L
Sbjct: 127 VGLQTNDITEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESAHPEVIQQL 186
Query: 181 LKDPVIQDCRLRRDTEDSQTLINQA 205
L+DPVI+DCRLR + LI +
Sbjct: 187 LQDPVIRDCRLRNAEGEETELITET 211
>gi|443733454|gb|ELU17809.1| hypothetical protein CAPTEDRAFT_153297 [Capitella teleta]
Length = 739
Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 128/155 (82%), Positives = 136/155 (87%)
Query: 42 AVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCR 101
P+DEFG KD R+ + LK DH RPLWV P+GHIFLESFSPVY+HAHDFLIAIAEPVCR
Sbjct: 6 GAPDDEFGGKDLRSMLSLKADHVVRPLWVTPDGHIFLESFSPVYKHAHDFLIAIAEPVCR 65
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHI EYKLTAYSLYAAVSVGLET DIIEYL+RLSKTSVP+GI EFI LCTLSYGK+KLV
Sbjct: 66 PEHIQEYKLTAYSLYAAVSVGLETKDIIEYLRRLSKTSVPEGIEEFIKLCTLSYGKLKLV 125
Query: 162 LKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
LK NRYFIES F EVLQKLLKDPVIQ CRLRRD E
Sbjct: 126 LKFNRYFIESQFPEVLQKLLKDPVIQQCRLRRDAE 160
>gi|410912458|ref|XP_003969706.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Takifugu rubripes]
Length = 781
Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 132/201 (65%), Positives = 161/201 (80%), Gaps = 2/201 (0%)
Query: 4 KRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 63
+R KK V +E +D + VP AA K V D++ + +DE+GAKDYR+QM +K DH
Sbjct: 11 RRSKKRVNEEEDDEDDVGNESREAVPAAAGKQV--DESGIKQDEYGAKDYRSQMQMKDDH 68
Query: 64 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
SRPLWVAP+GHIFLE+FSPVY++A DFLIAIAEPVCRP HIHEYKLTAYSLYAAVSVGL
Sbjct: 69 ASRPLWVAPDGHIFLEAFSPVYKYAQDFLIAIAEPVCRPTHIHEYKLTAYSLYAAVSVGL 128
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
+T DI+EYL++LSKTSVP+GIV+FI LCT+SYGKVKLVLKHNRYF ES F +V+Q+LL+D
Sbjct: 129 QTSDIVEYLQKLSKTSVPEGIVQFIKLCTVSYGKVKLVLKHNRYFAESAFPDVIQRLLQD 188
Query: 184 PVIQDCRLRRDTEDSQTLINQ 204
VI++CRLR D LI +
Sbjct: 189 NVIRECRLRTDDGADTELITE 209
>gi|42415513|ref|NP_963876.1| TFIIH basal transcription factor complex helicase XPB subunit
[Danio rerio]
gi|82241436|sp|Q7ZVV1.1|ERCC3_DANRE RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|28277642|gb|AAH45400.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Danio rerio]
gi|182892000|gb|AAI65665.1| Ercc3 protein [Danio rerio]
Length = 782
Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 126/181 (69%), Positives = 152/181 (83%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D+++ DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 33 QEAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPLWVAPDGHIFLEAFSPV 90
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AI+EPVCRP H HEYKLTAYSLYAAVSVGL+T DIIEYL++LSKTSVPDGI
Sbjct: 91 YKYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQTSDIIEYLQKLSKTSVPDGI 150
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
V+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI+DCRLR + LI +
Sbjct: 151 VQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDTVIRDCRLRSAEGEETELITE 210
Query: 205 A 205
Sbjct: 211 T 211
>gi|47205016|emb|CAF93977.1| unnamed protein product [Tetraodon nigroviridis]
Length = 841
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/168 (73%), Positives = 149/168 (88%), Gaps = 2/168 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D + + +DE+GAKDYR+QM +K DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 15 QEAVPAAAGKQV--DVSIIKQDEYGAKDYRSQMQMKDDHASRPLWVAPDGHIFLEAFSPV 72
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFLIAIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI+EYL++LSKTSVPDGI
Sbjct: 73 YKYAQDFLIAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDIVEYLQKLSKTSVPDGI 132
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
V+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI++CRLR
Sbjct: 133 VQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQQLLQDTVIRECRLR 180
>gi|332814347|ref|XP_525907.3| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Pan troglodytes]
Length = 768
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/202 (64%), Positives = 160/202 (79%), Gaps = 5/202 (2%)
Query: 6 KKKEVEDESYVDDPGEPLD--EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 63
+K+ EDE D+P P + ++ VP AA K V D++ DE+GAKDYR QM LK DH
Sbjct: 30 RKRHYEDEE-DDEPYAPGNDPQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDH 86
Query: 64 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL
Sbjct: 87 TSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGL 146
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+D
Sbjct: 147 QTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQD 206
Query: 184 PVIQDCRLRRDTEDSQTLINQA 205
PVI++CRLR ++ LI +
Sbjct: 207 PVIRECRLRNSEGEATELITET 228
>gi|194332647|ref|NP_001123812.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Xenopus (Silurana) tropicalis]
gi|189441808|gb|AAI67617.1| LOC100170563 protein [Xenopus (Silurana) tropicalis]
Length = 786
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 161/200 (80%), Gaps = 4/200 (2%)
Query: 1 KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+KR+ E EDE + PG E VP AA K V D+A +DE+GAKDYR QM LK
Sbjct: 13 KKFKRRHYEEEDEEEEEVPGGEYQE-AVPSAAGKQV--DEAGTKQDEYGAKDYRLQMPLK 69
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AI+EPVCRP H HEYKLTAYSLYAAVS
Sbjct: 70 MDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPSHTHEYKLTAYSLYAAVS 129
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+T DI+EYL++LSKT VP+GIV+FI LCT+SYGKVKLVLKHNRYF+ES EV+Q+L
Sbjct: 130 VGLQTSDIVEYLQKLSKTGVPEGIVQFIKLCTVSYGKVKLVLKHNRYFVESTHPEVIQEL 189
Query: 181 LKDPVIQDCRLRRDTEDSQT 200
L+D VI+ CRL RD E ++T
Sbjct: 190 LQDSVIRGCRL-RDAEGNET 208
>gi|72255519|ref|NP_001026814.1| TFIIH basal transcription factor complex helicase XPB subunit
[Rattus norvegicus]
gi|123781857|sp|Q4G005.1|ERCC3_RAT RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|71051759|gb|AAH98856.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Rattus norvegicus]
gi|149017136|gb|EDL76187.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Rattus norvegicus]
Length = 782
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 152/187 (81%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|19526800|ref|NP_598419.1| TFIIH basal transcription factor complex helicase XPB subunit [Mus
musculus]
gi|1351441|sp|P49135.1|ERCC3_MOUSE RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=Basic transcription factor 2 89
kDa subunit; Short=BTF2 p89; AltName: Full=DNA excision
repair protein ERCC-3; AltName: Full=DNA repair protein
complementing XP-B cells; AltName: Full=TFIIH 89 kDa
subunit; AltName: Full=Xeroderma pigmentosum group
B-complementing protein
gi|240583|gb|AAB20614.1| DNA repair gene [Mus sp.]
gi|16741581|gb|AAH16595.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mus musculus]
gi|20072984|gb|AAH26575.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mus musculus]
gi|148664642|gb|EDK97058.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, isoform CRA_b [Mus musculus]
Length = 783
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 152/187 (81%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|74185870|dbj|BAE32801.1| unnamed protein product [Mus musculus]
Length = 783
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 152/187 (81%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|73984146|ref|XP_533314.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Canis lupus familiaris]
Length = 782
Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 151/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHGSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|350538541|ref|NP_001233723.1| TFIIH basal transcription factor complex helicase XPB subunit
[Cricetulus griseus]
gi|117572517|gb|ABK40495.1| DNA helicase [Cricetulus griseus]
Length = 782
Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 151/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKSDHASRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYLK+LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLKKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|387019089|gb|AFJ51662.1| TFIIH basal transcription factor complex helicase XPB subunit-like
[Crotalus adamanteus]
Length = 779
Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/181 (68%), Positives = 148/181 (81%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K VE D+ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 32 QEAVPSAAGKQVE--DSGTKVDEYGAKDYRNQMPLKADHSSRPLWVAPDGHIFLEAFSPV 89
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 90 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKTGVPDGI 149
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES EV+Q+LL+D VI++CRLR + LI +
Sbjct: 150 IQFIKLCTVSYGKVKLVLKHNRYFVESAHPEVIQQLLQDQVIRECRLRNAEGEETELITE 209
Query: 205 A 205
Sbjct: 210 T 210
>gi|344290062|ref|XP_003416758.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Loxodonta africana]
Length = 782
Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTGDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 IQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|170581278|ref|XP_001895614.1| helicase [Brugia malayi]
gi|158597374|gb|EDP35540.1| helicase, putative [Brugia malayi]
Length = 798
Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 127/178 (71%), Positives = 146/178 (82%), Gaps = 2/178 (1%)
Query: 28 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 87
VP AA N+E D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFSPVY+H
Sbjct: 45 VPKAASHNLEGQTTVTRTDDFGAKDYRHEMKLKPDHASRPLWVAPDGHIFLESFSPVYKH 104
Query: 88 AHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEF 147
AHDFLIAI+EPVCRPE IHEY+LTAYSLYAAVS+GL+T DIIEYL+RLSK+S+P GI+EF
Sbjct: 105 AHDFLIAISEPVCRPEFIHEYQLTAYSLYAAVSIGLQTSDIIEYLERLSKSSLPKGIIEF 164
Query: 148 INLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRD--TEDSQTLIN 203
I +CTLSYGKVKLVLK+NRYFIES ++V+Q LLKD VIQ C + TE QT IN
Sbjct: 165 IKMCTLSYGKVKLVLKYNRYFIESRHSDVIQTLLKDKVIQQCLIEEKPATEIPQTNIN 222
>gi|410968486|ref|XP_003990735.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Felis catus]
Length = 782
Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 151/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSDGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|344235728|gb|EGV91831.1| TFIIH basal transcription factor complex helicase XPB subunit
[Cricetulus griseus]
Length = 1183
Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 124/181 (68%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 510 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKSDHASRPLWVAPDGHIFLEAFSPV 567
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYLK+LSKT VPDGI
Sbjct: 568 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLKKLSKTGVPDGI 627
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 628 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEATELITE 687
Query: 205 A 205
Sbjct: 688 T 688
>gi|397516177|ref|XP_003828312.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 1 [Pan paniscus]
gi|410208020|gb|JAA01229.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
gi|410306508|gb|JAA31854.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
gi|410342887|gb|JAA40390.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
Length = 782
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|403280219|ref|XP_003931625.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|296204328|ref|XP_002749284.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Callithrix jacchus]
Length = 782
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|291391360|ref|XP_002712461.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 3 [Oryctolagus
cuniculus]
Length = 782
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 151/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHASRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|426337101|ref|XP_004032562.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Gorilla gorilla gorilla]
Length = 741
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|388454156|ref|NP_001253337.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|402892199|ref|XP_003909307.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 1 [Papio anubis]
gi|62510678|sp|Q60HG1.1|ERCC3_MACFA RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|52782215|dbj|BAD51954.1| xeroderma pigmentosum group B complementing factor [Macaca
fascicularis]
gi|380810472|gb|AFE77111.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|383412921|gb|AFH29674.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|384945792|gb|AFI36501.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
Length = 782
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|395855908|ref|XP_003800388.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Otolemur garnettii]
Length = 782
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG E VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNESHE-AVPSAAGKQV--DESGTKVDEYGAKDYRVQMPLKDDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|60653125|gb|AAX29257.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [synthetic construct]
Length = 783
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|4557563|ref|NP_000113.1| TFIIH basal transcription factor complex helicase XPB subunit [Homo
sapiens]
gi|119541|sp|P19447.1|ERCC3_HUMAN RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=Basic transcription factor 2 89
kDa subunit; Short=BTF2 p89; AltName: Full=DNA excision
repair protein ERCC-3; AltName: Full=DNA repair protein
complementing XP-B cells; AltName: Full=TFIIH basal
transcription factor complex 89 kDa subunit; Short=TFIIH
89 kDa subunit; Short=TFIIH p89; AltName: Full=Xeroderma
pigmentosum group B-complementing protein
gi|182179|gb|AAA52396.1| DNA repair helicase [Homo sapiens]
gi|14250706|gb|AAH08820.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Homo sapiens]
gi|24286758|gb|AAN46739.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Homo sapiens]
gi|60656181|gb|AAX32654.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [synthetic construct]
gi|62822521|gb|AAY15069.1| unknown [Homo sapiens]
gi|119615719|gb|EAW95313.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_c [Homo sapiens]
gi|123994253|gb|ABM84728.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [synthetic construct]
gi|157928689|gb|ABW03630.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [synthetic construct]
gi|168277380|dbj|BAG10668.1| TFIIH basal transcription factor complex helicase XPB subunit
[synthetic construct]
Length = 782
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|62896489|dbj|BAD96185.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 variant [Homo sapiens]
Length = 782
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|158254380|dbj|BAF83163.1| unnamed protein product [Homo sapiens]
Length = 782
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|335302531|ref|XP_003133336.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Sus scrofa]
Length = 782
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 151/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHASRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|449506509|ref|XP_002192901.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Taeniopygia guttata]
Length = 782
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/181 (68%), Positives = 148/181 (81%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K VE+ V DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 36 QEAVPSAAGKQVEESGTKV--DEYGAKDYRLQMPLKADHSSRPLWVAPDGHIFLEAFSPV 93
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 94 YKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKTGVPDGI 153
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q+LL+D VI++CRLR + LI +
Sbjct: 154 IQFIKLCTVSYGKVKLVLKHNRYFVESTHPDVIQQLLQDHVIKECRLRNAEGEETELITE 213
Query: 205 A 205
Sbjct: 214 T 214
>gi|426220683|ref|XP_004004543.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Ovis aries]
Length = 782
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 149/187 (79%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG E VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNDTQE-AVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+D VI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDAVIRECRLRNSEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|120538319|gb|AAI29781.1| LOC100036984 protein [Xenopus laevis]
Length = 772
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/176 (70%), Positives = 149/176 (84%), Gaps = 3/176 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D+A +DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 23 QEAVPSAAGKQV--DEAGTKQDEYGAKDYRLQMPLKGDHSSRPLWVAPDGHIFLEAFSPV 80
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AI+EPVCRP HIHEYKLTAYSLYAAVSVGL+T DI+EYL++LSKT VP+GI
Sbjct: 81 YKYAQDFLVAISEPVCRPSHIHEYKLTAYSLYAAVSVGLQTSDIVEYLQKLSKTGVPEGI 140
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
V+FI LCT+SYGKVKLVLKHNRYF+ES EV+Q+LL+ VI+ CRL RD E ++T
Sbjct: 141 VQFIKLCTVSYGKVKLVLKHNRYFVESTHPEVIQELLQHTVIRSCRL-RDAEGNET 195
>gi|301783213|ref|XP_002927021.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Ailuropoda melanoleuca]
Length = 778
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKGDHSSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+D VI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDAVIRECRLRNSEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|114050909|ref|NP_001039453.1| TFIIH basal transcription factor complex helicase XPB subunit [Bos
taurus]
gi|122134582|sp|Q1RMT1.1|ERCC3_BOVIN RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|92097496|gb|AAI14730.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Bos taurus]
gi|296490749|tpg|DAA32862.1| TPA: TFIIH basal transcription factor complex helicase XPB subunit
[Bos taurus]
Length = 782
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG E VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNDTQE-AVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI +YL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITDYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|156392034|ref|XP_001635854.1| predicted protein [Nematostella vectensis]
gi|156222952|gb|EDO43791.1| predicted protein [Nematostella vectensis]
Length = 734
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 121/161 (75%), Positives = 139/161 (86%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
DEFGAKDYR Q+ LKPDH SRPLWVAP+GHIFLESFSPVY+HAHDFLIAI+EPVCRPEH+
Sbjct: 1 DEFGAKDYRKQIELKPDHASRPLWVAPDGHIFLESFSPVYKHAHDFLIAISEPVCRPEHV 60
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEY+LTAYSLYAAVSVGL+T+DIIEYL+RLSKT++PDGI++FI +CTLSYGKVKLVLK N
Sbjct: 61 HEYRLTAYSLYAAVSVGLQTNDIIEYLRRLSKTTIPDGIIQFIKMCTLSYGKVKLVLKRN 120
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQAD 206
+YF+ES A+VLQ LL+D IQ CR R ED Q D
Sbjct: 121 QYFVESSHADVLQALLRDSKIQQCRKRAAEEDEADPTGQKD 161
>gi|324505126|gb|ADY42208.1| TFIIH basal transcription factor complex helicase XPB subunit
[Ascaris suum]
Length = 798
Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 141/163 (86%)
Query: 27 GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYR 86
VP AA N+E A D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFSPVY+
Sbjct: 48 SVPKAASHNLEGQTAVSRTDDFGAKDYRHEMKLKPDHASRPLWVAPDGHIFLESFSPVYK 107
Query: 87 HAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVE 146
HAHDFLIAI+EPVCRPE IHEY+LTAYSLYAAVS+GL+T+DI+EYL+RLSK+S+P GI+E
Sbjct: 108 HAHDFLIAISEPVCRPEFIHEYQLTAYSLYAAVSIGLQTNDIVEYLERLSKSSLPKGIIE 167
Query: 147 FINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
FI +CTLSYGKVKLVLKHNRYF+ES ++V+Q LLKD VI+ C
Sbjct: 168 FIKMCTLSYGKVKLVLKHNRYFVESRHSDVIQTLLKDKVIRQC 210
>gi|402594523|gb|EJW88449.1| DNA excision repair protein haywire [Wuchereria bancrofti]
Length = 781
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 150/188 (79%), Gaps = 3/188 (1%)
Query: 24 DEDG-VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFS 82
D+D VP AA N+E D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFS
Sbjct: 40 DKDATVPKAASHNLEGQTMVTRTDDFGAKDYRHEMKLKPDHASRPLWVAPDGHIFLESFS 99
Query: 83 PVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPD 142
PVY+HAHDFLIAI+EPVCRPE IHEY+LTAYSLYAAVS+GL+T DIIEYL+RLSK+S+P
Sbjct: 100 PVYKHAHDFLIAISEPVCRPEFIHEYQLTAYSLYAAVSIGLQTGDIIEYLERLSKSSLPK 159
Query: 143 GIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRD--TEDSQT 200
GI+EFI +CTLSYGKVKLVLK+NRYFIES ++V+Q LLKD VIQ C + TE QT
Sbjct: 160 GIIEFIKMCTLSYGKVKLVLKYNRYFIESRHSDVIQTLLKDKVIQQCLIEEKPATEIPQT 219
Query: 201 LINQADKK 208
+ D K
Sbjct: 220 KQKEKDAK 227
>gi|312066345|ref|XP_003136226.1| helicase [Loa loa]
gi|307768612|gb|EFO27846.1| helicase [Loa loa]
Length = 798
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 1/182 (0%)
Query: 9 EVEDESYVDDPGEPLDEDG-VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 67
E S + + D+D VP AA N+E D+FGAKDYR +M LKPDH SRP
Sbjct: 25 ENSQSSNLGERNNSSDKDATVPKAASHNLEGQTMITRTDDFGAKDYRHEMKLKPDHVSRP 84
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
LWVAP+GHIFLESFSPVY+HAHDFLIAIAEPVCRPE IHEY+LTAYSLYAAVS+GL+T D
Sbjct: 85 LWVAPDGHIFLESFSPVYKHAHDFLIAIAEPVCRPEFIHEYQLTAYSLYAAVSIGLQTSD 144
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQ 187
IIEYL+RLSK+S+P GI+EFI +CTLSYGKVKLVLK+NRYFIES ++V+Q LLKD VIQ
Sbjct: 145 IIEYLERLSKSSLPKGIIEFIKMCTLSYGKVKLVLKYNRYFIESRHSDVIQTLLKDKVIQ 204
Query: 188 DC 189
C
Sbjct: 205 QC 206
>gi|197101765|ref|NP_001125797.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pongo abelii]
gi|75070714|sp|Q5RA62.1|ERCC3_PONAB RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|55729225|emb|CAH91348.1| hypothetical protein [Pongo abelii]
Length = 782
Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 122/181 (67%), Positives = 148/181 (81%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAE VCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|417404577|gb|JAA49035.1| Putative rna polymer [Desmodus rotundus]
Length = 782
Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D+ + DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGND-SQEAVPSAAGKQV--DELSTKLDEYGAKDYRLQMPLKADHNSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
+P+GI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR +
Sbjct: 147 GIPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRSSEGEV 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|4150989|emb|CAA76655.1| XPB protein [Geodia cydonium]
Length = 810
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/182 (69%), Positives = 148/182 (81%), Gaps = 5/182 (2%)
Query: 18 DPGEPLDEDGVPVAAKKNVEKDDAAV--PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGH 75
D G D+ +P AA K+ D+AV P D+FGAKDY + LK DH SRP+WVAP+GH
Sbjct: 38 DEGPTTDKVVIPNAASKS---GDSAVIAPTDDFGAKDYTKILTLKVDHISRPIWVAPDGH 94
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
IFLE+FSPVY+HA DFLIAIAEP+CRP+HIHE+KLTAYSLYAAVSVGL+T DIIEYLKRL
Sbjct: 95 IFLEAFSPVYKHARDFLIAIAEPICRPQHIHEFKLTAYSLYAAVSVGLQTKDIIEYLKRL 154
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDT 195
SKT++PDGI +FI CTLSYGKVKLVLKHNRYF+ES F EV+Q LLKDPV+Q RL D
Sbjct: 155 SKTTIPDGIAKFIEDCTLSYGKVKLVLKHNRYFVESAFPEVMQTLLKDPVVQQARLVPDE 214
Query: 196 ED 197
+D
Sbjct: 215 QD 216
>gi|340379126|ref|XP_003388078.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Amphimedon queenslandica]
Length = 794
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/188 (67%), Positives = 148/188 (78%), Gaps = 1/188 (0%)
Query: 28 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 87
VP +A N+ AA P DE+GAKDY + LK DH +RPLWVAP+GHIFLESFSPVYRH
Sbjct: 35 VPNSASANISTSGAA-PCDEYGAKDYSVLLTLKLDHSTRPLWVAPDGHIFLESFSPVYRH 93
Query: 88 AHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEF 147
A DFLIAIAEPVCRPEHIHE++LT+YSLYAAVSVGL+T +II YL LSKT++P GIVE+
Sbjct: 94 ARDFLIAIAEPVCRPEHIHEFQLTSYSLYAAVSVGLQTENIIHYLSVLSKTTIPPGIVEY 153
Query: 148 INLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADK 207
I LCTLSYGKVKLVLKHNRYF+ES + +V+Q LLKD VIQ RL R E+ ++ QA
Sbjct: 154 IKLCTLSYGKVKLVLKHNRYFVESIYPDVMQSLLKDDVIQSTRLIRSEEEEALIVEQAAT 213
Query: 208 KLKAPQFG 215
K + QFG
Sbjct: 214 KKQPLQFG 221
>gi|393912228|gb|EJD76645.1| helicase, variant [Loa loa]
Length = 606
Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 1/182 (0%)
Query: 9 EVEDESYVDDPGEPLDEDG-VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 67
E S + + D+D VP AA N+E D+FGAKDYR +M LKPDH SRP
Sbjct: 25 ENSQSSNLGERNNSSDKDATVPKAASHNLEGQTMITRTDDFGAKDYRHEMKLKPDHVSRP 84
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
LWVAP+GHIFLESFSPVY+HAHDFLIAIAEPVCRPE IHEY+LTAYSLYAAVS+GL+T D
Sbjct: 85 LWVAPDGHIFLESFSPVYKHAHDFLIAIAEPVCRPEFIHEYQLTAYSLYAAVSIGLQTSD 144
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQ 187
IIEYL+RLSK+S+P GI+EFI +CTLSYGKVKLVLK+NRYFIES ++V+Q LLKD VIQ
Sbjct: 145 IIEYLERLSKSSLPKGIIEFIKMCTLSYGKVKLVLKYNRYFIESRHSDVIQTLLKDKVIQ 204
Query: 188 DC 189
C
Sbjct: 205 QC 206
>gi|126325929|ref|XP_001366494.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Monodelphis domestica]
Length = 783
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GH+FL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESGTKLDEYGAKDYRLQMPLKDDHASRPLWVAPDGHVFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYLK+LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPSHVHEYKLTAYSLYAAVSVGLQTSDITEYLKKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+++LL+D VI++CRLR +
Sbjct: 147 GVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIKELLQDQVIRECRLRNAEGEE 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|395519351|ref|XP_003763813.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Sarcophilus harrisii]
Length = 783
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GH+FL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESGTKLDEYGAKDYRIQMPLKDDHASRPLWVAPDGHVFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYLK+LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPSHVHEYKLTAYSLYAAVSVGLQTSDITEYLKKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+++LL+D VI++CRLR +
Sbjct: 147 GVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIKELLQDQVIRECRLRNAEGEE 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>gi|355566063|gb|EHH22492.1| hypothetical protein EGK_05771 [Macaca mulatta]
gi|355751659|gb|EHH55914.1| hypothetical protein EGM_05215 [Macaca fascicularis]
Length = 784
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/183 (67%), Positives = 150/183 (81%), Gaps = 4/183 (2%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFI--NLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLI 202
++FI +LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI
Sbjct: 153 MQFIKASLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELI 212
Query: 203 NQA 205
+
Sbjct: 213 TET 215
>gi|67967581|dbj|BAE00273.1| unnamed protein product [Macaca fascicularis]
Length = 782
Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/181 (66%), Positives = 147/181 (81%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEY+LTAYSLYA VSVGL+T DI EYL++LSKT V DGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYELTAYSLYAVVSVGLQTSDITEYLRKLSKTGVSDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>gi|57529720|ref|NP_001006523.1| TFIIH basal transcription factor complex helicase XPB subunit
[Gallus gallus]
gi|82082180|sp|Q5ZKK7.1|ERCC3_CHICK RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|53130814|emb|CAG31736.1| hypothetical protein RCJMB04_10e8 [Gallus gallus]
Length = 788
Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG+ ++ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPLWVAP+GHIFL
Sbjct: 27 PGKE-SQEAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFL 83
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 84 EAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKT 143
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VP+GI++FI LCT+SYGKVKLVLK NRYF+ES +V+Q+LL+D VI+DCRLR +
Sbjct: 144 GVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPDVIQQLLQDHVIKDCRLRNAEGEE 203
Query: 199 QTLINQA 205
LI +
Sbjct: 204 TELITET 210
>gi|339233162|ref|XP_003381698.1| DNA excision repair protein haywire [Trichinella spiralis]
gi|316979455|gb|EFV62248.1| DNA excision repair protein haywire [Trichinella spiralis]
Length = 837
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/195 (66%), Positives = 148/195 (75%), Gaps = 10/195 (5%)
Query: 2 KYKRKKKEVEDESYVDDPGEPLD----ED---GVPVAAKKNVEKDDAAVPEDEFGAKDYR 54
K R K EV D S+ +D D ED VP A K + + V DEFGAKDYR
Sbjct: 15 KRNRSKWEVYDPSFCNDNKNADDIALVEDELAAVPDVASKKISE---TVHSDEFGAKDYR 71
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
QM LK DH+ RPLW+AP+GH+FLESFSPVY+HAHDFLIAIAEPVCRPE IHEY+LTAYS
Sbjct: 72 NQMPLKADHQFRPLWIAPDGHVFLESFSPVYKHAHDFLIAIAEPVCRPEFIHEYQLTAYS 131
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGL+T DII+YL RLSKT +P GIVEFI LCTLSYGKVKLVLK NRYF+ES +
Sbjct: 132 LYAAVSVGLQTQDIIDYLDRLSKTELPGGIVEFIKLCTLSYGKVKLVLKENRYFVESTHS 191
Query: 175 EVLQKLLKDPVIQDC 189
+QKL+KDP+I+ C
Sbjct: 192 SAIQKLVKDPIIRSC 206
>gi|308483808|ref|XP_003104105.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
gi|308258413|gb|EFP02366.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
Length = 797
Score = 255 bits (651), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 122/185 (65%), Positives = 148/185 (80%), Gaps = 1/185 (0%)
Query: 27 GVPVAAKKNVEKDD-AAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 85
VP AA N+ D+ ++V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSPVY
Sbjct: 36 AVPKAASHNLNADNTSSVMVDEFGAKDYRKDMPLKGDFTARPLWVAPDGHIFLESFSPVY 95
Query: 86 RHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIV 145
+HA DFLIAI+EPVCRP+HIHEY+LTAYSLYAAVSVGL+T DIIEYL+RLSK+ +P G++
Sbjct: 96 KHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQTKDIIEYLERLSKSQLPKGVI 155
Query: 146 EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
FI +CT+SYGKVKLVLKHNRYF+ES ++V+QKLLKD VIQ C L + +Q A
Sbjct: 156 TFIQMCTVSYGKVKLVLKHNRYFVESRHSDVMQKLLKDTVIQSCILDDRVQPAQQTNEPA 215
Query: 206 DKKLK 210
+K+K
Sbjct: 216 QEKIK 220
>gi|119615717|gb|EAW95311.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_a [Homo sapiens]
Length = 796
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 149/195 (76%), Gaps = 16/195 (8%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFI--------------NLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CR
Sbjct: 153 MQFIKATAHLPVGCYLYLQLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECR 212
Query: 191 LRRDTEDSQTLINQA 205
LR ++ LI +
Sbjct: 213 LRNSEGEATELITET 227
>gi|440907187|gb|ELR57360.1| TFIIH basal transcription factor complex helicase XPB subunit [Bos
grunniens mutus]
Length = 778
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/188 (64%), Positives = 148/188 (78%), Gaps = 4/188 (2%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG E VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNDTQE-AVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI +YL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITDYLRKLSKT 146
Query: 139 SVPDGIVEFINL-CTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
VP+GI++FI CT+ YGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR +
Sbjct: 147 GVPEGIIQFIKARCTVCYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGE 206
Query: 198 SQTLINQA 205
+ LI +
Sbjct: 207 ATELITET 214
>gi|268572763|ref|XP_002641406.1| Hypothetical protein CBG13269 [Caenorhabditis briggsae]
Length = 789
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 148/185 (80%), Gaps = 1/185 (0%)
Query: 27 GVPVAAKKNVEKDDAA-VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 85
VP AA N+ ++++ V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSPVY
Sbjct: 36 AVPKAASHNLSGENSSSVMTDEFGAKDYRKDMPLKADFSARPLWVAPDGHIFLESFSPVY 95
Query: 86 RHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIV 145
+HA DFLIAI+EPVCRP+HIHEY+LTAYSLYAAVSVGL+T DIIEYL+RLSK+ +P G++
Sbjct: 96 KHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQTKDIIEYLERLSKSQLPKGVI 155
Query: 146 EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
FI +CT+SYGKVKLVLKHNRYF+ES ++V+QKLLKD VIQ C L + +Q A
Sbjct: 156 TFIQMCTVSYGKVKLVLKHNRYFVESRHSDVMQKLLKDTVIQSCILDDRVQPAQQTDLSA 215
Query: 206 DKKLK 210
+K+K
Sbjct: 216 QEKIK 220
>gi|17556358|ref|NP_499487.1| Protein Y66D12A.15 [Caenorhabditis elegans]
gi|15795210|emb|CAC70144.1| Protein Y66D12A.15 [Caenorhabditis elegans]
Length = 789
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/188 (64%), Positives = 149/188 (79%), Gaps = 1/188 (0%)
Query: 24 DEDGVPVAAKKNVEKDDAA-VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFS 82
+ VP AA N+ ++A+ V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFS
Sbjct: 31 ETSSVPKAASHNLNGENASSVMTDEFGAKDYRKDMPLKGDFTARPLWVAPDGHIFLESFS 90
Query: 83 PVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPD 142
PVY+HA DFLIAI+EPVCRP+HIHEY+LTAYSLYAAVSVGL+T DIIEYL+RLSK+ +P
Sbjct: 91 PVYKHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQTKDIIEYLERLSKSQLPK 150
Query: 143 GIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLI 202
G++ F+ +CT+SYGKVKLVLKHNRYF+ES ++V+QKLLKD VIQ C L + +Q
Sbjct: 151 GVITFVQMCTVSYGKVKLVLKHNRYFVESRHSDVMQKLLKDSVIQSCILDDRVQPAQQTE 210
Query: 203 NQADKKLK 210
A +K+K
Sbjct: 211 LPAQEKIK 218
>gi|196001637|ref|XP_002110686.1| hypothetical protein TRIADDRAFT_22911 [Trichoplax adhaerens]
gi|190586637|gb|EDV26690.1| hypothetical protein TRIADDRAFT_22911, partial [Trichoplax
adhaerens]
Length = 704
Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 110/147 (74%), Positives = 134/147 (91%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
D++GAKDYR M LKPDH++RPLWVAP+GHIFLE+FSPVY+HAHDFLIAI+EP+CRPEH+
Sbjct: 1 DDYGAKDYRDVMQLKPDHRTRPLWVAPDGHIFLEAFSPVYKHAHDFLIAISEPICRPEHV 60
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEYKLT YSLYAAVSVGL+T DIIEYL+RLSK S+PDG++EFI LCT+SYGKVK+VLKHN
Sbjct: 61 HEYKLTPYSLYAAVSVGLQTEDIIEYLRRLSKASIPDGVIEFIKLCTVSYGKVKMVLKHN 120
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCRLR 192
RY++ES E++Q LLKDPV+Q R++
Sbjct: 121 RYYVESSHPEIIQMLLKDPVVQAARVK 147
>gi|341890534|gb|EGT46469.1| hypothetical protein CAEBREN_17583 [Caenorhabditis brenneri]
Length = 797
Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/174 (68%), Positives = 142/174 (81%), Gaps = 1/174 (0%)
Query: 27 GVPVAAKKNVEKDDAA-VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 85
VP AA N+ ++A DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSPVY
Sbjct: 34 AVPKAASHNLNGENAPPATFDEFGAKDYRKDMPLKADFSARPLWVAPDGHIFLESFSPVY 93
Query: 86 RHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIV 145
+HA DFLIAI+EPVCRP+HIHEY+LTAYSLYAAVSVGL+T DIIEYL+RLSK+ +P G++
Sbjct: 94 KHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQTKDIIEYLERLSKSQLPKGVI 153
Query: 146 EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQ 199
+FI +CT+SYGKVKLVLKHNRYF+ES ++V+QKLLKD VIQ C L E +Q
Sbjct: 154 QFIQMCTVSYGKVKLVLKHNRYFVESRHSDVMQKLLKDAVIQSCILDDRIEPAQ 207
>gi|449685455|ref|XP_004210899.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Hydra magnipapillata]
Length = 526
Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 118/159 (74%), Positives = 137/159 (86%), Gaps = 1/159 (0%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
DE+GAKDYR + LK DH+SRPLWVAP+GHIFLESFS VY+HAHDFLI IAEPVCRP+ I
Sbjct: 63 DEYGAKDYRKIVSLKADHQSRPLWVAPDGHIFLESFSAVYKHAHDFLITIAEPVCRPKFI 122
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEYKLTAYSLYAAVSVGL+T DIIEYL RLSKT++P+GIV+FI LCT+SYGKVKLVLKHN
Sbjct: 123 HEYKLTAYSLYAAVSVGLQTKDIIEYLTRLSKTTIPEGIVQFIELCTISYGKVKLVLKHN 182
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCR-LRRDTEDSQTLIN 203
RY++ES F + LQ+LLKDP IQ CR L +D + LI+
Sbjct: 183 RYYVESNFPDALQQLLKDPEIQMCRALSKDDGSNGELIS 221
>gi|348586086|ref|XP_003478801.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Cavia porcellus]
Length = 781
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 144/181 (79%), Gaps = 3/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR+QM LK DH SRPLWV H+ L +FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRSQMPLKDDHSSRPLWVLLMPHL-LGAFSPV 91
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 92 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 151
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 152 LQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEATELITE 211
Query: 205 A 205
Sbjct: 212 T 212
>gi|307201000|gb|EFN80971.1| TFIIH basal transcription factor complex helicase XPB subunit
[Harpegnathos saltator]
Length = 737
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/134 (83%), Positives = 121/134 (90%)
Query: 24 DEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
+ DGVP AAK ++EK D EDEFGAKDYR QM+LKPD SRPLWVAPNGHIFLESFSP
Sbjct: 34 EADGVPDAAKNDIEKQDETAIEDEFGAKDYRLQMILKPDCASRPLWVAPNGHIFLESFSP 93
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
VY+HAHDFLIAI+EPVCRPE+IHEYKLTAYSLYAAVSVGL+T DIIEYLKRLSKTSVPDG
Sbjct: 94 VYKHAHDFLIAISEPVCRPEYIHEYKLTAYSLYAAVSVGLQTEDIIEYLKRLSKTSVPDG 153
Query: 144 IVEFINLCTLSYGK 157
I+EFI LCTLSYGK
Sbjct: 154 IIEFIKLCTLSYGK 167
>gi|444721477|gb|ELW62213.1| TFIIH basal transcription factor complex helicase XPB subunit
[Tupaia chinensis]
Length = 761
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 142/187 (75%), Gaps = 13/187 (6%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 ----------GLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 196
Query: 199 QTLINQA 205
LI +
Sbjct: 197 TELITET 203
>gi|198426377|ref|XP_002119177.1| PREDICTED: hypothetical protein [Ciona intestinalis]
Length = 794
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 135/166 (81%), Gaps = 3/166 (1%)
Query: 28 VPVAAKKNVEKDDAAVPE---DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
VP AA +N++ + D+FGAKDYR+ M +K DH SRPL++AP+GHIFLESFSPV
Sbjct: 40 VPAAAGRNIDSNTTTASSALLDKFGAKDYRSNMEMKKDHASRPLYLAPDGHIFLESFSPV 99
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y+HA DFLIAI+EP+CRP+ IHE++LT YSLYAAVSVGL+T DIIEYL RLSKTS+P GI
Sbjct: 100 YKHARDFLIAISEPICRPKFIHEFRLTPYSLYAAVSVGLDTEDIIEYLGRLSKTSIPPGI 159
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
VEFI LCT SYGKVKLVLKHN+Y++ES +V+Q LL+D VI CR
Sbjct: 160 VEFIRLCTQSYGKVKLVLKHNKYYVESSHVDVIQTLLRDHVIASCR 205
>gi|431912953|gb|ELK14778.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pteropus alecto]
Length = 834
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/234 (51%), Positives = 150/234 (64%), Gaps = 54/234 (23%)
Query: 24 DEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSP
Sbjct: 34 SQEAVPSAAGKQV--DESSTRLDEYGAKDYRLQMPLKDDHSSRPLWVAPDGHIFLEAFSP 91
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
+Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDG
Sbjct: 92 LYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDG 151
Query: 144 IVEFI----------------------------------------------------NLC 151
+++FI LC
Sbjct: 152 LIQFIKAKGVGFRLLNLEWQKMSATGIQYSNSFNLREADGALESSLIVMWKVAQGEGQLC 211
Query: 152 TLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
T+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 212 TVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNTEGEATELITET 265
>gi|194294489|ref|NP_001123567.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Ciona intestinalis]
gi|1764011|emb|CAB06045.1| COS41.1 [Ciona intestinalis]
Length = 793
Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/167 (66%), Positives = 135/167 (80%), Gaps = 3/167 (1%)
Query: 27 GVPVAAKKNVEKDDAAVPE---DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
VP AA +N++ + D+FGAKDYR+ M +K DH SRPL++AP+GHIFLESFSP
Sbjct: 38 AVPAAAGRNIDSNTNTASSALLDKFGAKDYRSNMEMKKDHASRPLYLAPDGHIFLESFSP 97
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
VY+HA DFLIAI+EP+CRP+ IHE++LT YSLYAAVSVGL+T DIIEYL RLSKTS+P G
Sbjct: 98 VYKHARDFLIAISEPICRPKFIHEFRLTPYSLYAAVSVGLDTEDIIEYLGRLSKTSIPPG 157
Query: 144 IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
IVEFI LCT SYGKVKLVLKHN+Y++ES +V+Q LL+D VI CR
Sbjct: 158 IVEFIRLCTQSYGKVKLVLKHNKYYVESSHVDVIQTLLRDYVIASCR 204
>gi|405959468|gb|EKC25508.1| TFIIH basal transcription factor complex helicase XPB subunit
[Crassostrea gigas]
Length = 282
Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/155 (74%), Positives = 132/155 (85%), Gaps = 3/155 (1%)
Query: 20 GEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLE 79
G+ + +P AA ++V DD EDEFGAKDYR ++ LKPDH SRPL+VAPNGHIFLE
Sbjct: 38 GKTSSTEEIPDAATRSV--DDTG-KEDEFGAKDYRTELALKPDHNSRPLFVAPNGHIFLE 94
Query: 80 SFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTS 139
SFSPVY+HAHDFLIAI+EPVCRPE IHEYKLTAYSLYAAVSVGLET+DIIEYL+RL KTS
Sbjct: 95 SFSPVYKHAHDFLIAISEPVCRPEFIHEYKLTAYSLYAAVSVGLETNDIIEYLRRLCKTS 154
Query: 140 VPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
+P GI EFI LCTLSYGKVKLVLKHN+Y++ES A
Sbjct: 155 LPKGIEEFIKLCTLSYGKVKLVLKHNKYYVESQHA 189
>gi|397516179|ref|XP_003828313.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 2 [Pan paniscus]
gi|397516181|ref|XP_003828314.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 3 [Pan paniscus]
Length = 718
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 128/149 (85%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLY
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V
Sbjct: 61 AAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDV 120
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
+Q LL+DPVI++CRLR ++ LI +
Sbjct: 121 IQHLLQDPVIRECRLRNSEGEATELITET 149
>gi|402892201|ref|XP_003909308.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 2 [Papio anubis]
Length = 718
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 128/149 (85%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLY
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V
Sbjct: 61 AAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDV 120
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
+Q LL+DPVI++CRLR ++ LI +
Sbjct: 121 IQHLLQDPVIRECRLRNSEGEATELITET 149
>gi|403280221|ref|XP_003931626.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 2 [Saimiri boliviensis boliviensis]
gi|403280223|ref|XP_003931627.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 3 [Saimiri boliviensis boliviensis]
Length = 718
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 128/149 (85%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLY
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V
Sbjct: 61 AAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDV 120
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
+Q LL+DPVI++CRLR ++ LI +
Sbjct: 121 IQHLLQDPVIRECRLRNSEGEATELITET 149
>gi|313230223|emb|CBY07927.1| unnamed protein product [Oikopleura dioica]
Length = 792
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 148/188 (78%), Gaps = 2/188 (1%)
Query: 6 KKKEVEDESYVDDPGEPLDEDGVPVAAKKNVE--KDDAAVPEDEFGAKDYRAQMVLKPDH 63
KK+ + ++ + + + D VP AA ++ +DD E+ G KD+R ++ LK DH
Sbjct: 9 KKRRRDMDNNIGNEEKDDDAQLVPKAASSHIGTIRDDGVPQEESSGPKDFRHRLALKADH 68
Query: 64 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
+SRP++++P+GHIFLE+FSPVY+HA DFLI IAEP+CRPE++HE+KLT YSLYAAVSVGL
Sbjct: 69 QSRPIYISPDGHIFLEAFSPVYQHARDFLIGIAEPICRPENVHEFKLTPYSLYAAVSVGL 128
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
ET++IIEYL+RLSKTS+PD I+EFI LCTLSYGKVKL+LK NRYFIES +V+QKLL D
Sbjct: 129 ETNEIIEYLQRLSKTSIPDEIIEFIKLCTLSYGKVKLLLKENRYFIESSHIDVIQKLLAD 188
Query: 184 PVIQDCRL 191
PVI C++
Sbjct: 189 PVIHSCKI 196
>gi|193787168|dbj|BAG52374.1| unnamed protein product [Homo sapiens]
Length = 718
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 128/149 (85%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLY
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V
Sbjct: 61 AAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDV 120
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
+Q LL+DPVI++CRLR ++ LI +
Sbjct: 121 IQHLLQDPVIRECRLRNSEGEATELITET 149
>gi|441663476|ref|XP_004091680.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPB subunit [Nomascus leucogenys]
Length = 737
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 106/147 (72%), Positives = 127/147 (86%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAA
Sbjct: 26 LKDDHNSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAA 85
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q
Sbjct: 86 VSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQ 145
Query: 179 KLLKDPVIQDCRLRRDTEDSQTLINQA 205
LL+DPVI++CRLR ++ LI +
Sbjct: 146 HLLQDPVIRECRLRNSEGEATELITET 172
>gi|119615718|gb|EAW95312.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_b [Homo sapiens]
gi|119615720|gb|EAW95314.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_b [Homo sapiens]
Length = 718
Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 128/149 (85%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLY
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V
Sbjct: 61 AAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDV 120
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
+Q LL+DPVI++CRLR ++ LI +
Sbjct: 121 IQHLLQDPVIRECRLRNSEGEATELITET 149
>gi|193787880|dbj|BAG53083.1| unnamed protein product [Homo sapiens]
Length = 718
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 128/149 (85%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTA+SLY
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAHSLY 60
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V
Sbjct: 61 AAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDV 120
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
+Q LL+DPVI++CRLR ++ LI +
Sbjct: 121 IQHLLQDPVIRECRLRNSEGEATELITET 149
>gi|358332745|dbj|GAA39781.2| DNA excision repair protein ERCC-3 [Clonorchis sinensis]
Length = 931
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 121/172 (70%), Gaps = 7/172 (4%)
Query: 42 AVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCR 101
P DEFGAKD R + L+PDH RPLWV P+GHIFLE+F P+ R A DFL+AIAEPVCR
Sbjct: 127 CTPRDEFGAKDMRNILSLRPDHPCRPLWVGPDGHIFLEAFGPLSRQAQDFLVAIAEPVCR 186
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
P HIHEYKLT+YSLYAAVSVGL T +II L+RL KT +P GIV +I CTLSYGK KLV
Sbjct: 187 PTHIHEYKLTSYSLYAAVSVGLRTGEIIGCLRRLCKTDLPPGIVAYIRSCTLSYGKAKLV 246
Query: 162 LKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTE-------DSQTLINQAD 206
LK RYF+ESP LQ+L D V++ C +R + D+ L N AD
Sbjct: 247 LKGGRYFVESPHRRFLQQLANDSVVRQCLIRTGGQTDGETAADTVVLYNAAD 298
>gi|194222122|ref|XP_001488557.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Equus caballus]
Length = 983
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 117/135 (86%)
Query: 71 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIE 130
AP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI E
Sbjct: 280 APDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITE 339
Query: 131 YLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
YL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CR
Sbjct: 340 YLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECR 399
Query: 191 LRRDTEDSQTLINQA 205
LR ++ LI +
Sbjct: 400 LRNSEGEATELITET 414
>gi|449270402|gb|EMC81080.1| TFIIH basal transcription factor complex helicase XPB subunit,
partial [Columba livia]
Length = 705
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 116/135 (85%)
Query: 71 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIE 130
AP+GHIFLE+FSP+Y++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI E
Sbjct: 1 APDGHIFLEAFSPIYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITE 60
Query: 131 YLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
YL++LSKT VPDGIV+FI LCT+SYGKVKLVLKHNRYF+ES +V+Q+LL+D VI+DCR
Sbjct: 61 YLQKLSKTGVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESTHPDVIQQLLQDHVIKDCR 120
Query: 191 LRRDTEDSQTLINQA 205
LR + LI +
Sbjct: 121 LRNAEGEETELITET 135
>gi|360044168|emb|CCD81715.1| putative rad25/xp-B DNA repair helicase [Schistosoma mansoni]
Length = 769
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/183 (55%), Positives = 126/183 (68%), Gaps = 7/183 (3%)
Query: 7 KKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 66
++V D S V+D + K E P+DEFGAKD R + L+ DH SR
Sbjct: 49 NEDVYDNSEVND-------SNIKKIMNKPTETTVVCTPKDEFGAKDMRNILKLRLDHPSR 101
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PLW+ P+GHIFLE+F+P+ R A DFLIAI+EPVCRP HIHEYKLT+YSLYAAVSVGL T
Sbjct: 102 PLWIGPDGHIFLETFNPLARQAQDFLIAISEPVCRPLHIHEYKLTSYSLYAAVSVGLRTG 161
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
+II L+RL KT++P+GIV +I CTLSYGK KLVLK RYF+ESP + L +L D +
Sbjct: 162 EIIGCLRRLCKTNLPEGIVAYIRSCTLSYGKAKLVLKGGRYFVESPHRQFLHQLANDKTV 221
Query: 187 QDC 189
Q C
Sbjct: 222 QQC 224
>gi|256085925|ref|XP_002579160.1| rad25/xp-B DNA repair helicase [Schistosoma mansoni]
Length = 722
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/183 (55%), Positives = 126/183 (68%), Gaps = 7/183 (3%)
Query: 7 KKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 66
++V D S V+D + K E P+DEFGAKD R + L+ DH SR
Sbjct: 49 NEDVYDNSEVND-------SNIKKIMNKPTETTVVCTPKDEFGAKDMRNILKLRLDHPSR 101
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PLW+ P+GHIFLE+F+P+ R A DFLIAI+EPVCRP HIHEYKLT+YSLYAAVSVGL T
Sbjct: 102 PLWIGPDGHIFLETFNPLARQAQDFLIAISEPVCRPLHIHEYKLTSYSLYAAVSVGLRTG 161
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
+II L+RL KT++P+GIV +I CTLSYGK KLVLK RYF+ESP + L +L D +
Sbjct: 162 EIIGCLRRLCKTNLPEGIVAYIRSCTLSYGKAKLVLKGGRYFVESPHRQFLHQLANDKTV 221
Query: 187 QDC 189
Q C
Sbjct: 222 QQC 224
>gi|326922956|ref|XP_003207708.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Meleagris gallopavo]
Length = 733
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/135 (70%), Positives = 115/135 (85%)
Query: 71 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIE 130
AP+GHIFLE+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI E
Sbjct: 29 APDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITE 88
Query: 131 YLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
YL++LSKT VP+GI++FI LCT+SYGKVKLVLK NRYF+ES +V+Q+LL+D VI+DCR
Sbjct: 89 YLQKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPDVIQQLLQDHVIKDCR 148
Query: 191 LRRDTEDSQTLINQA 205
LR + LI +
Sbjct: 149 LRNAEGEETELITET 163
>gi|351703141|gb|EHB06060.1| TFIIH basal transcription factor complex helicase XPB subunit
[Heterocephalus glaber]
Length = 751
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/180 (56%), Positives = 121/180 (67%), Gaps = 33/180 (18%)
Query: 26 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 85
+ VP AA K V D+A DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPTAAGKQV--DEAGTKVDEYGAKDYRVQMPLKDDHSSRPLWVAPDGHIFLEAFSPVY 93
Query: 86 RHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIV 145
++A DFL+AIAEPVCRP H+HEYKLTAYSLYAA
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAA--------------------------- 126
Query: 146 EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 127 ----LCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEATELITET 182
>gi|384494451|gb|EIE84942.1| hypothetical protein RO3G_09652 [Rhizopus delemar RA 99-880]
Length = 831
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/151 (66%), Positives = 113/151 (74%), Gaps = 2/151 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +DY + LK D+ SRPLW++P +GHI LE FSP+ A DFL+AI+EPV RP HIH
Sbjct: 62 FGREDY-TNLPLKKDNASRPLWISPEDGHIILEGFSPIAEQAQDFLVAISEPVSRPAHIH 120
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYKLT YSLYAAVSVGLET DIIE L RLSK VPD I +FI CTLSYGKVKLVLKHNR
Sbjct: 121 EYKLTPYSLYAAVSVGLETEDIIEVLNRLSKVPVPDSITQFIRQCTLSYGKVKLVLKHNR 180
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
YF+ES E LQ LLKD VI R+ RD D
Sbjct: 181 YFVESSHPETLQMLLKDSVISAGRVVRDEND 211
>gi|430814591|emb|CCJ28199.1| unnamed protein product [Pneumocystis jirovecii]
Length = 801
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 119/160 (74%), Gaps = 3/160 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + LKPDH+SRPLW+ P +G I LE+FSP+ A DFLI IAEPV RP HIH
Sbjct: 35 FGENDFSYILTLKPDHESRPLWINPCDGKIILEAFSPLAEQAQDFLITIAEPVSRPVHIH 94
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LTAYSLYAAVSVGLET DII L RLSK +P+ IV+FI + T+SYGK+KLVLK NR
Sbjct: 95 EYRLTAYSLYAAVSVGLETDDIISVLDRLSKFPIPENIVQFIQMYTISYGKIKLVLKQNR 154
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQAD 206
YFIES AE+LQKLLKD VI LR D E S+ +N +
Sbjct: 155 YFIESSHAEILQKLLKDEVIGP--LRIDPESSKNKLNSMN 192
>gi|320164128|gb|EFW41027.1| transcription factor IIH subunit [Capsaspora owczarzaki ATCC 30864]
Length = 892
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/147 (63%), Positives = 116/147 (78%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPDH SRPLWV+P+GH+FLE+FSP+Y+ A DFLIAI+EPVCRP IHEY+LT YSLYAA
Sbjct: 99 LKPDHMSRPLWVSPDGHLFLETFSPIYKLATDFLIAISEPVCRPHLIHEYRLTPYSLYAA 158
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGLET +II+ L RLSK ++P I +FI CT+SYGKVKLVLKHN+YFIES + + L+
Sbjct: 159 VSVGLETENIIDVLGRLSKNAIPAEICDFIRDCTISYGKVKLVLKHNKYFIESSYPQALE 218
Query: 179 KLLKDPVIQDCRLRRDTEDSQTLINQA 205
K++ D VI R+ D+ S I+ A
Sbjct: 219 KIMDDEVIAQARMPTDSFSSGFSISDA 245
>gi|66828931|ref|XP_647819.1| transcription factor IIH subunit [Dictyostelium discoideum AX4]
gi|74955815|sp|O00835.1|ERCC3_DICDI RecName: Full=TFIIH basal transcription factor complex helicase
repB subunit; AltName: Full=DNA excision repair
cross-complementing protein-3 homolog; AltName: Full=DNA
repair helicase repB; AltName: Full=DNA repair protein B
gi|2058508|gb|AAB62732.1| RepB [Dictyostelium discoideum]
gi|60469985|gb|EAL67966.1| transcription factor IIH subunit [Dictyostelium discoideum AX4]
Length = 800
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/181 (54%), Positives = 129/181 (71%), Gaps = 3/181 (1%)
Query: 21 EPLDEDG-VPVAAKKNVEKDDAAV--PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIF 77
E L+E G + KK A + E++ DY + +LK D+KSRP+WV P+GHIF
Sbjct: 31 EDLEESGEFNQSIKKTTNTSSATLTSSEEKGSLLDYSKRCILKQDNKSRPIWVCPDGHIF 90
Query: 78 LESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSK 137
LE+FS +Y+ A DFL+AIAEPVCRP++IHEY+LT YSLYAAVSVGLET+DII L RLSK
Sbjct: 91 LETFSAIYKQASDFLVAIAEPVCRPQNIHEYQLTPYSLYAAVSVGLETNDIITVLGRLSK 150
Query: 138 TSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
++P + +F+ CT SYGKVKLVL+ N+YF+ES + EVL+ LLKD I R++ E+
Sbjct: 151 LALPKEVEQFVRQCTQSYGKVKLVLQKNKYFVESAYPEVLEFLLKDSSIATARIKPTLEE 210
Query: 198 S 198
S
Sbjct: 211 S 211
>gi|448090109|ref|XP_004196988.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|448094493|ref|XP_004198019.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|359378410|emb|CCE84669.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|359379441|emb|CCE83638.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
Length = 849
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 131/201 (65%), Gaps = 23/201 (11%)
Query: 7 KKEVEDESYVDD------PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K++VED +Y DD P P D VP A K FG D+ + + LK
Sbjct: 72 KQQVEDVNYSDDELMHLTPDIPTDY--VPDAVSK------------AFGKADF-SYLRLK 116
Query: 61 PDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
PDH SRP+W+ PN I LESFSP+ A DFLI IAEPV RP HIHEYK+TAYSLYAAV
Sbjct: 117 PDHFSRPIWICPNDARIILESFSPLAEQAQDFLITIAEPVSRPSHIHEYKITAYSLYAAV 176
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGLET DII L RLSK V D IV FI T+SYGKVKLVLKHNRYF+ES A +LQ
Sbjct: 177 SVGLETDDIISVLNRLSKVPVADSIVNFIRSATISYGKVKLVLKHNRYFVESTQANILQM 236
Query: 180 LLKDPVIQDCRLRRDTEDSQT 200
LLKDP+I R+ + +E+S +
Sbjct: 237 LLKDPIIGPLRI-QSSENSTS 256
>gi|302793364|ref|XP_002978447.1| hypothetical protein SELMODRAFT_109026 [Selaginella moellendorffii]
gi|300153796|gb|EFJ20433.1| hypothetical protein SELMODRAFT_109026 [Selaginella moellendorffii]
Length = 733
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 116/149 (77%)
Query: 43 VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRP 102
V E E K +++ LKPDH+ RPLWV P+GHIFLE+FSP+Y+ A+DFLIAIAEPVCRP
Sbjct: 8 VDEHETAGKMDFSKLELKPDHEKRPLWVGPDGHIFLETFSPLYKQAYDFLIAIAEPVCRP 67
Query: 103 EHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVL 162
EH+HEY LT +SLYAAVSVGLET +I L+RLSK +P IV FI TL+YGKVKLVL
Sbjct: 68 EHMHEYNLTPHSLYAAVSVGLETQTVITVLERLSKARLPQEIVNFIKESTLNYGKVKLVL 127
Query: 163 KHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
+ NRYF+ES + E+L+++LKD VI R+
Sbjct: 128 QKNRYFVESSYPEILERVLKDDVISRARI 156
>gi|392594902|gb|EIW84226.1| DNA helicase [Coniophora puteana RWD-64-598 SS2]
Length = 861
Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 116/162 (71%), Gaps = 10/162 (6%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHEYKLT+YSLYA
Sbjct: 103 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 162
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE L RLSK VP+ I+ FI TLSYGKVKLVLKHN+YFIES E L
Sbjct: 163 AVSVGLQTEDIIEVLNRLSKVPVPEAIISFIRERTLSYGKVKLVLKHNKYFIESSHPETL 222
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYSA 219
Q LLKD VI+D R+ + QAD +KA F A
Sbjct: 223 QLLLKDKVIRDARV---------VTQQADTSIKAATFTTMKA 255
>gi|255722173|ref|XP_002546021.1| DNA repair helicase RAD25 [Candida tropicalis MYA-3404]
gi|240136510|gb|EER36063.1| DNA repair helicase RAD25 [Candida tropicalis MYA-3404]
Length = 846
Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/208 (53%), Positives = 135/208 (64%), Gaps = 24/208 (11%)
Query: 7 KKEVEDESYVDD------PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK ++D ++ D+ P P D +P A KN FG D+ + + LK
Sbjct: 68 KKNLDDTNFSDEELLELTPDIPADY--IPDAVSKN------------FGKGDF-SYLKLK 112
Query: 61 PDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
PDH SRP+W++PN G I LESFSP+ A DFLI IAEPV RP HIHEY++TAYSLYAAV
Sbjct: 113 PDHFSRPIWISPNDGRIILESFSPLAEQAMDFLITIAEPVSRPSHIHEYRITAYSLYAAV 172
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGLET DII L RLSK V + I+ FI T+SYGKVKLVLKHNRYF+ES A++LQ
Sbjct: 173 SVGLETDDIISVLNRLSKVPVAESILNFIKAATVSYGKVKLVLKHNRYFVESTQADILQM 232
Query: 180 LLKDPVIQDCRLR--RDTEDSQTLINQA 205
LLKDPVI R++ +T S LI A
Sbjct: 233 LLKDPVIGPLRIQSSENTVTSNGLITSA 260
>gi|406603748|emb|CCH44773.1| DNA excision repair protein [Wickerhamomyces ciferrii]
Length = 831
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 137/215 (63%), Gaps = 22/215 (10%)
Query: 4 KRKKKEVEDESYVDDPGEPLD--EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 61
KRK+++ EDE + + G LD D VP K K+D + + LKP
Sbjct: 59 KRKQQDAEDEDVLVEAGPNLDIPPDYVPDVVSKMFNKNDFSY-------------LKLKP 105
Query: 62 DHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
DH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEY++TAYSLYAAVS
Sbjct: 106 DHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYRITAYSLYAAVS 165
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGLET DII L RLSK V IV+FI T+SYGKVKLVLKHNRYF+ES A++LQ L
Sbjct: 166 VGLETDDIISVLNRLSKVPVATSIVDFIKGATISYGKVKLVLKHNRYFVESTQADILQML 225
Query: 181 LKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
LKD V+ R+ D+ DS + KAP+ G
Sbjct: 226 LKDEVLGPLRI--DSSDSANGLTSG----KAPEQG 254
>gi|302773734|ref|XP_002970284.1| hypothetical protein SELMODRAFT_147068 [Selaginella moellendorffii]
gi|300161800|gb|EFJ28414.1| hypothetical protein SELMODRAFT_147068 [Selaginella moellendorffii]
Length = 713
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 112/137 (81%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
+++ LKPDH+ RPLWV P+GHIFLE+FSP+Y+ A+DFLIAIAEPVCRPEH+HEY LT +S
Sbjct: 4 SKLELKPDHEKRPLWVGPDGHIFLETFSPLYKQAYDFLIAIAEPVCRPEHMHEYNLTPHS 63
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET +I L+RLSK +P IV FI TL+YGKVKLVL+ NRYF+ES +
Sbjct: 64 LYAAVSVGLETQTVITVLERLSKARLPQEIVNFIKESTLNYGKVKLVLQKNRYFVESSYP 123
Query: 175 EVLQKLLKDPVIQDCRL 191
E+L+++LKD VI R+
Sbjct: 124 EILERVLKDDVISRARI 140
>gi|241958282|ref|XP_002421860.1| DNA repair helicase, putative [Candida dubliniensis CD36]
gi|223645205|emb|CAX39804.1| DNA repair helicase, putative [Candida dubliniensis CD36]
Length = 846
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/183 (56%), Positives = 124/183 (67%), Gaps = 16/183 (8%)
Query: 26 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPV 84
D +P A KN FG D+ + + LKPDH SRP+W++PN G I LESFSP+
Sbjct: 94 DYIPDAVSKN------------FGKGDF-SYLKLKPDHFSRPIWISPNDGRIILESFSPL 140
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
A DFLI IAEP+ RP HIHEY++TAYSLYAAVSVGLET DII L RLSK V + I
Sbjct: 141 AEQAQDFLITIAEPISRPSHIHEYRITAYSLYAAVSVGLETDDIISVLNRLSKVPVAESI 200
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRR--DTEDSQTLI 202
+ FI T+SYGKVKLVLKHNRYF+ES A++LQ LLKDPVI R++ +T S LI
Sbjct: 201 LNFIKAATVSYGKVKLVLKHNRYFVESTQADILQMLLKDPVIGPLRIQSSDNTVTSNGLI 260
Query: 203 NQA 205
A
Sbjct: 261 TSA 263
>gi|50546603|ref|XP_500771.1| YALI0B11726p [Yarrowia lipolytica]
gi|49646637|emb|CAG83021.1| YALI0B11726p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/145 (65%), Positives = 110/145 (75%), Gaps = 2/145 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH +RPLW+ P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 84 FGKHDF-SYLKLKPDHAARPLWINPEDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 142
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++T YSLYAAVSVGLET DII L RLSK VP I+ FI+ CT SYGKVKLVLKHNR
Sbjct: 143 EYRITTYSLYAAVSVGLETSDIISVLNRLSKVPVPKSIINFIHSCTKSYGKVKLVLKHNR 202
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRL 191
YF+ES A+VLQ LLKDPVI RL
Sbjct: 203 YFVESSQADVLQMLLKDPVIGALRL 227
>gi|344304136|gb|EGW34385.1| DNA repair helicase RAD25 [Spathaspora passalidarum NRRL Y-27907]
Length = 842
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH SRP+W++PN G I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 100 FGKADF-SYLKLKPDHFSRPIWISPNDGRIILESFSPLAEQAQDFLITIAEPISRPSHIH 158
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++TAYSLYAAVSVGLET DII L RLSK V + I+ FI T+SYGKVKLVLKHNR
Sbjct: 159 EYRITAYSLYAAVSVGLETDDIISVLNRLSKVPVAESIINFIKGATVSYGKVKLVLKHNR 218
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLR--RDTEDSQTLINQA 205
YF+ES A++LQ LLKDPVI R++ +T S L+ A
Sbjct: 219 YFVESTQADILQMLLKDPVIGPLRIQSSENTVTSNGLVQSA 259
>gi|150864721|ref|XP_001383669.2| DNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149385977|gb|ABN65640.2| DNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 838
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 131/207 (63%), Gaps = 23/207 (11%)
Query: 7 KKEVEDESYVDD------PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
+ EV D Y DD P P D VP A K FG DY + + LK
Sbjct: 69 RAEVNDTVYSDDDLVELTPDIP--SDYVPDAVSK------------VFGKSDY-SYLKLK 113
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH SRP+W++P+G I LESFSP+ A DFLI IAEP+ RP HIHEY+LT YSLYAAVS
Sbjct: 114 PDHFSRPIWMSPDGRIILESFSPLAEQAQDFLITIAEPISRPSHIHEYRLTPYSLYAAVS 173
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGLET DII L RLSK V + +VEFI T+SYGKVKLVLKHNRYF+ES A++LQ L
Sbjct: 174 VGLETDDIISVLSRLSKVPVAEKVVEFIKSATISYGKVKLVLKHNRYFVESTQADILQML 233
Query: 181 LKDPVIQDCRLR--RDTEDSQTLINQA 205
LKD VI R++ +T S L+ A
Sbjct: 234 LKDEVIGPLRIQSSENTVTSNGLVKSA 260
>gi|238879758|gb|EEQ43396.1| DNA repair helicase RAD25 [Candida albicans WO-1]
Length = 843
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 129/193 (66%), Gaps = 22/193 (11%)
Query: 7 KKEVEDESYVDD------PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K+ +++ +Y D+ P P D +P A KN FG D+ + + LK
Sbjct: 68 KQNLDETNYSDNELIELTPDVPADY--IPDAVSKN------------FGKGDF-SYLKLK 112
Query: 61 PDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
PDH SRP+W++PN G I LESFSP+ A DFLI IAEP+ RP HIHEY++TAYSLYAAV
Sbjct: 113 PDHFSRPIWISPNDGRIILESFSPLAEQAQDFLITIAEPISRPSHIHEYRITAYSLYAAV 172
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGLET DII L RLSK V + I+ FI T+SYGKVKLVLKHNRYF+ES A++LQ
Sbjct: 173 SVGLETDDIISVLNRLSKVPVAESIINFIKAATVSYGKVKLVLKHNRYFVESTQADILQM 232
Query: 180 LLKDPVIQDCRLR 192
LLKDPVI R++
Sbjct: 233 LLKDPVIGPLRIQ 245
>gi|68480483|ref|XP_715839.1| hypothetical protein CaO19.10376 [Candida albicans SC5314]
gi|68480588|ref|XP_715788.1| hypothetical protein CaO19.2857 [Candida albicans SC5314]
gi|46437427|gb|EAK96774.1| hypothetical protein CaO19.2857 [Candida albicans SC5314]
gi|46437480|gb|EAK96826.1| hypothetical protein CaO19.10376 [Candida albicans SC5314]
Length = 843
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 129/193 (66%), Gaps = 22/193 (11%)
Query: 7 KKEVEDESYVDD------PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
K+ +++ +Y D+ P P D +P A KN FG D+ + + LK
Sbjct: 68 KQNLDETNYSDNELIELTPDVPADY--IPDAVSKN------------FGKGDF-SYLKLK 112
Query: 61 PDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
PDH SRP+W++PN G I LESFSP+ A DFLI IAEP+ RP HIHEY++TAYSLYAA+
Sbjct: 113 PDHFSRPIWISPNDGRIILESFSPLAEQAQDFLITIAEPISRPSHIHEYRITAYSLYAAI 172
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGLET DII L RLSK V + I+ FI T+SYGKVKLVLKHNRYF+ES A++LQ
Sbjct: 173 SVGLETDDIISVLNRLSKVPVAESIINFIKAATVSYGKVKLVLKHNRYFVESTQADILQM 232
Query: 180 LLKDPVIQDCRLR 192
LLKDPVI R++
Sbjct: 233 LLKDPVIGPLRIQ 245
>gi|148905942|gb|ABR16132.1| unknown [Picea sitchensis]
Length = 772
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/191 (52%), Positives = 133/191 (69%), Gaps = 11/191 (5%)
Query: 1 KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
++ KR+K ++E + D+ + ++E E+D D +D+ ++M LK
Sbjct: 9 RQSKRQKTSKKEEQFADEDIDYVEE----------YEEDYQDGEGDGLQKRDF-SKMELK 57
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWV +G IFLE+FS +Y+ A+DFLIAIAEPVCRPE +HEY LT +SLYAAVS
Sbjct: 58 PDHFNRPLWVCSDGRIFLETFSALYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS 117
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGLET II L +LSKT +P+ I++FIN T +YGKVKLVLK NRYF+ESP+ EVL+ L
Sbjct: 118 VGLETETIIAVLNKLSKTKLPNEIIDFINGSTANYGKVKLVLKKNRYFVESPYPEVLKTL 177
Query: 181 LKDPVIQDCRL 191
LKD VI RL
Sbjct: 178 LKDAVIARSRL 188
>gi|297805512|ref|XP_002870640.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
lyrata]
gi|297316476|gb|EFH46899.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
lyrata]
Length = 767
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
Query: 39 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 98
+D+ E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEP
Sbjct: 38 EDSRDGEGEEKKRDF-TELELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEP 96
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
VCRPE +HEY LT +SLYAAVSVGLET II L +LSKT +P+ I++FI+ T +YGKV
Sbjct: 97 VCRPESMHEYSLTPHSLYAAVSVGLETETIISVLNKLSKTKLPNEIIDFIHASTANYGKV 156
Query: 159 KLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
KLVLK NRYFIESPF EVL++LL D I RL
Sbjct: 157 KLVLKKNRYFIESPFTEVLKRLLSDDTINRARL 189
>gi|344233375|gb|EGV65247.1| DNA repair helicase rad25 [Candida tenuis ATCC 10573]
Length = 829
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 121/170 (71%), Gaps = 8/170 (4%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH SRP+W++P +G I LESFSP+ A DFLI IAEPV RP HIH
Sbjct: 92 FGKSDF-SYLRLKPDHFSRPIWISPKDGRIILESFSPLAEQAQDFLITIAEPVSRPSHIH 150
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYK+T YSLYAAVSVGLET DII+ L RLSK V + I FI T+SYGKVKLVLK+NR
Sbjct: 151 EYKITPYSLYAAVSVGLETDDIIQVLNRLSKVPVAESITNFIKGATVSYGKVKLVLKNNR 210
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRD-TEDSQTLINQADKKLKAPQFG 215
YF+ES A+VLQ LLKDPVI R+ + T DS L+ KL AP G
Sbjct: 211 YFVESAQADVLQMLLKDPVIGPLRINSESTVDSNGLV-----KLAAPTQG 255
>gi|356528573|ref|XP_003532875.1| PREDICTED: DNA repair helicase XPB1-like [Glycine max]
Length = 768
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 42 AVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCR 101
A +D+ KD+ +++ LKPDH +RPLW NG IFLE+FSP+Y+HA+DFLIAIAEPVCR
Sbjct: 40 AYDDDDGKTKDF-SKLELKPDHTNRPLWACGNGRIFLETFSPLYKHAYDFLIAIAEPVCR 98
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PE +HEY LT +SLYAAVSVGLET +I L +LSKT +P +++FI+ T +YGKVKLV
Sbjct: 99 PESMHEYNLTPHSLYAAVSVGLETETVINVLNKLSKTKLPKEMIKFIHDSTANYGKVKLV 158
Query: 162 LKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
LK NRYFIESPF EVL+ LL+D I RL
Sbjct: 159 LKKNRYFIESPFPEVLKTLLRDETISRSRL 188
>gi|402224508|gb|EJU04570.1| DNA repair helicase rad25 [Dacryopinax sp. DJM-731 SS1]
Length = 762
Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 112/145 (77%), Gaps = 2/145 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ A + LK DH SRPLW+ P +GHI LE FSP+ A DFL+AI+EPV RP IH
Sbjct: 2 FGDQDF-AYLQLKGDHMSRPLWIDPVDGHIILEGFSPIAEQAQDFLVAISEPVSRPSFIH 60
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYKLTAYSLYAAVSVGLET DIIE L RLSK +PD ++++I CT+SYGKVKLVLKHN+
Sbjct: 61 EYKLTAYSLYAAVSVGLETEDIIEVLNRLSKVPIPDNVLQYIRSCTMSYGKVKLVLKHNK 120
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRL 191
YF+ES E+LQ LL+D I+ R+
Sbjct: 121 YFVESTHPEILQTLLRDQEIRSARV 145
>gi|222619087|gb|EEE55219.1| hypothetical protein OsJ_03086 [Oryza sativa Japonica Group]
Length = 766
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 112/144 (77%), Gaps = 2/144 (1%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +S
Sbjct: 53 TKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 112
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II + +LSKT +P I++FI+ T +YGKVKLVLK NRYF+ESPF
Sbjct: 113 LYAAVSVGLETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFP 172
Query: 175 EVLQKLLKDPVIQDCRLRRDTEDS 198
EVL+ LLKD +I CR R EDS
Sbjct: 173 EVLKTLLKDDII--CRARISPEDS 194
>gi|218188886|gb|EEC71313.1| hypothetical protein OsI_03346 [Oryza sativa Indica Group]
Length = 766
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 112/144 (77%), Gaps = 2/144 (1%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +S
Sbjct: 53 TKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 112
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II + +LSKT +P I++FI+ T +YGKVKLVLK NRYF+ESPF
Sbjct: 113 LYAAVSVGLETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFP 172
Query: 175 EVLQKLLKDPVIQDCRLRRDTEDS 198
EVL+ LLKD +I CR R EDS
Sbjct: 173 EVLKTLLKDDII--CRARISPEDS 194
>gi|356513365|ref|XP_003525384.1| PREDICTED: DNA repair helicase XPB1-like [Glycine max]
Length = 768
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 42 AVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCR 101
A +D+ KD+ +++ LKPDH +RPLW NG IFLE+FSP+Y+HA+DFLIAIAEPVCR
Sbjct: 40 AYDDDDGKTKDF-SKLELKPDHPNRPLWACGNGRIFLETFSPLYKHAYDFLIAIAEPVCR 98
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PE +HEY LT +SLYAAVSVGLET +I L +LSKT +P +V+FI+ T +YGKVKLV
Sbjct: 99 PESMHEYNLTPHSLYAAVSVGLETETVISVLNKLSKTKLPKEMVKFIHDSTANYGKVKLV 158
Query: 162 LKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
LK NRYFIESPF EVL+ LL+D I R+
Sbjct: 159 LKKNRYFIESPFPEVLKTLLRDETISRSRI 188
>gi|330791017|ref|XP_003283591.1| hypothetical protein DICPUDRAFT_96425 [Dictyostelium purpureum]
gi|325086451|gb|EGC39840.1| hypothetical protein DICPUDRAFT_96425 [Dictyostelium purpureum]
Length = 792
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 113/147 (76%)
Query: 52 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT 111
D+ + LK D K+RPLWV P+GHIFLE+FSP+Y+ A DFL+AI+EPVCRP+ IHEY+LT
Sbjct: 63 DFSKKCGLKKDDKTRPLWVCPDGHIFLETFSPIYKQASDFLVAISEPVCRPQLIHEYQLT 122
Query: 112 AYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIES 171
YSLYAAVSVGLET+DII L RLSK +P + +FI CT SYGKVKLVL+ N+YF+ES
Sbjct: 123 PYSLYAAVSVGLETNDIITVLNRLSKLYLPKEVEQFIRQCTQSYGKVKLVLQKNKYFVES 182
Query: 172 PFAEVLQKLLKDPVIQDCRLRRDTEDS 198
+ EVL+ LLKD I R++ E+S
Sbjct: 183 AYPEVLEFLLKDSTIASSRIKPTLEES 209
>gi|115439313|ref|NP_001043936.1| Os01g0691600 [Oryza sativa Japonica Group]
gi|113533467|dbj|BAF05850.1| Os01g0691600 [Oryza sativa Japonica Group]
Length = 580
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 116/152 (76%), Gaps = 3/152 (1%)
Query: 47 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 46 EVKKRDF-TKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 104
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGLET II + +LSKT +P I++FI+ T +YGKVKLVLK NR
Sbjct: 105 EYNLTPHSLYAAVSVGLETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNR 164
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
YF+ESPF EVL+ LLKD +I CR R EDS
Sbjct: 165 YFVESPFPEVLKTLLKDDII--CRARISPEDS 194
>gi|393217046|gb|EJD02536.1| DNA repair helicase rad25 [Fomitiporia mediterranea MF3/22]
Length = 872
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 137/223 (61%), Gaps = 36/223 (16%)
Query: 4 KRKKKEVEDESYVD----DPGEPLDEDGVPVAAKKNV---------------EKDDAAVP 44
KR + E ++E Y++ P P++ VP A N +++D A+
Sbjct: 16 KRLRAEDDNEEYLELEPEFPDSPVETSLVPKGATINFSALTRKLAEQRREAEDEEDTAMG 75
Query: 45 EDEFGAKDYRAQ---------------MVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHA 88
F A RAQ + LKPDH SRPLW++P +G+I LE FSP+ A
Sbjct: 76 SSTFAAH-RRAQNKLVSHIFADQDFSWLHLKPDHSSRPLWISPEDGYIILEGFSPIAEQA 134
Query: 89 HDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFI 148
DFL+AI+EPV RP IHEYKLTAYSLYAAVSVGL+T DIIE L RLSK VPD I++FI
Sbjct: 135 QDFLVAISEPVSRPAFIHEYKLTAYSLYAAVSVGLQTEDIIEVLNRLSKVPVPDTIIDFI 194
Query: 149 NLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
T+SYGKVKLVLKHN+YFIES + LQ LLKDPVI+ R+
Sbjct: 195 RERTMSYGKVKLVLKHNKYFIESSHPDTLQHLLKDPVIRGARV 237
>gi|403412105|emb|CCL98805.1| predicted protein [Fibroporia radiculosa]
Length = 860
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 137/211 (64%), Gaps = 25/211 (11%)
Query: 5 RKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 64
RK K+ +DE +DG ++A++ K D+ V F D+ + + LKPDH
Sbjct: 65 RKPKDTDDE-----------KDGTALSARQ--RKQDSLVSHI-FMDLDF-SWLHLKPDHS 109
Query: 65 SRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHEYKLT+YSLYAAVSVGL
Sbjct: 110 SRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYAAVSVGL 169
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
+T DIIE L RLSK VP+ IV FI TLSYGKVKLVLKHN+YF+ES E LQ LLKD
Sbjct: 170 QTEDIIEVLNRLSKVPVPESIVSFIRERTLSYGKVKLVLKHNKYFVESNHPETLQVLLKD 229
Query: 184 PVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
+I++ R+ AD +KA F
Sbjct: 230 KMIREARVHTQV---------ADNSIKAATF 251
>gi|449452290|ref|XP_004143892.1| PREDICTED: DNA repair helicase XPB1-like [Cucumis sativus]
Length = 768
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 124/171 (72%), Gaps = 2/171 (1%)
Query: 47 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
E G +D+ +++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 46 EGGKRDF-SKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 104
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGLET II L +LSK +P +++FI T +YGKVKLVLK NR
Sbjct: 105 EYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNR 164
Query: 167 YFIESPFAEVLQKLLKDPVIQDCR-LRRDTEDSQTLINQADKKLKAPQFGL 216
Y +ESPF EVLQKLLKD VI R + D+ + + +++ +L + GL
Sbjct: 165 YLVESPFPEVLQKLLKDEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGL 215
>gi|449530460|ref|XP_004172213.1| PREDICTED: DNA repair helicase XPB1-like, partial [Cucumis sativus]
Length = 725
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 124/171 (72%), Gaps = 2/171 (1%)
Query: 47 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
E G +D+ +++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 3 EGGKRDF-SKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 61
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGLET II L +LSK +P +++FI T +YGKVKLVLK NR
Sbjct: 62 EYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNR 121
Query: 167 YFIESPFAEVLQKLLKDPVIQDCR-LRRDTEDSQTLINQADKKLKAPQFGL 216
Y +ESPF EVLQKLLKD VI R + D+ + + +++ +L + GL
Sbjct: 122 YLVESPFPEVLQKLLKDEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGL 172
>gi|47606403|gb|AAT36215.1| DNA repair and transcription factor XPB1 [Arabidopsis thaliana]
Length = 767
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 44 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 102
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY LT +SLYAAVSVGLET II L +LSKT +P ++EFI+ T +YGKVKLVLK
Sbjct: 103 MHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKK 162
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRL 191
NRYFIESPF EVL++LL D VI R
Sbjct: 163 NRYFIESPFPEVLKRLLSDDVINRARF 189
>gi|393241520|gb|EJD49042.1| DNA repair helicase rad25 [Auricularia delicata TFB-10046 SS5]
Length = 873
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
Query: 57 MVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
+ LKPDH +RPLW+ P +GHI LE+FSP+ A DFL+AI+EPV RP +HEYK+T+YSL
Sbjct: 107 LSLKPDHAARPLWINPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFMHEYKVTSYSL 166
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGLET DIIE L RLSK VP+ IV+FI CT+SYGKVKLVLKHN+YF+ES +
Sbjct: 167 YAAVSVGLETDDIIEVLNRLSKVPVPESIVQFIRDCTVSYGKVKLVLKHNKYFVESSHPD 226
Query: 176 VLQKLLKDPVIQDCRLRRDTEDSQTLINQADKK 208
LQ LLKD +I++ R+ D + ++A +K
Sbjct: 227 TLQLLLKDSIIRNARVVSDGTAAAVTASKAPQK 259
>gi|336370746|gb|EGN99086.1| hypothetical protein SERLA73DRAFT_168625 [Serpula lacrymans var.
lacrymans S7.3]
Length = 858
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 113/157 (71%), Gaps = 10/157 (6%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRP+W++P +GHI LE+FSP+ A DFL+AI+EPV RP IHEYKLT+YSLYA
Sbjct: 100 LKPDHASRPIWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 159
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE L RLSK VP+ I+ FI TLSYGKVKLVLKHN+YF+ES E L
Sbjct: 160 AVSVGLQTEDIIEVLNRLSKVPVPESIIGFIRERTLSYGKVKLVLKHNKYFVESSHPETL 219
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
Q LLKD I+D R+ T AD +KA F
Sbjct: 220 QLLLKDRTIRDARVVSQT---------ADNSIKAATF 247
>gi|18422091|ref|NP_568592.1| DNA repair helicase XPB1 [Arabidopsis thaliana]
gi|57013137|sp|Q38861.3|XPB1_ARATH RecName: Full=DNA repair helicase XPB1; AltName: Full=ERCC3 homolog
1; AltName: Full=Protein araXPB; AltName: Full=RAD25
homolog 1; Short=AtXPB1; AltName: Full=XPB homolog 1
gi|11771735|gb|AAC49987.2| putative DNA repair protein and transcription factor [Arabidopsis
thaliana]
gi|14517424|gb|AAK62602.1| AT5g41370/MYC6_8 [Arabidopsis thaliana]
gi|21360401|gb|AAM47316.1| AT5g41370/MYC6_8 [Arabidopsis thaliana]
gi|332007287|gb|AED94670.1| DNA repair helicase XPB1 [Arabidopsis thaliana]
Length = 767
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 44 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 102
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY LT +SLYAAVSVGLET II L +LSKT +P ++EFI+ T +YGKVKLVLK
Sbjct: 103 MHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKK 162
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRL 191
NRYFIESPF EVL++LL D VI R
Sbjct: 163 NRYFIESPFPEVLKRLLSDDVINRARF 189
>gi|354544829|emb|CCE41554.1| hypothetical protein CPAR2_801060 [Candida parapsilosis]
Length = 857
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FGA D+ + + LKPDH +RPLW++PN I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 97 FGASDF-SYLKLKPDHFTRPLWISPNDMRIILESFSPLAEQAQDFLITIAEPISRPSHIH 155
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYK+T +SLYAAVSVGLET+DII L RLSK V D IVEFI T+SYGK+KLVLK+NR
Sbjct: 156 EYKITPFSLYAAVSVGLETNDIISVLNRLSKVPVTDTIVEFIKAATVSYGKIKLVLKNNR 215
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLR--RDTEDSQTLINQA 205
YF+ES A++LQ LLKD VI R++ +T S L+ A
Sbjct: 216 YFVESTQADILQMLLKDEVIGPLRIQSTENTVTSNGLVQSA 256
>gi|9758046|dbj|BAB08509.1| DNA excision repair cross-complementing protein; similar to human
Xeroderma pigmentosum group B DNA repair protein
[Arabidopsis thaliana]
Length = 755
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 32 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 90
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY LT +SLYAAVSVGLET II L +LSKT +P ++EFI+ T +YGKVKLVLK
Sbjct: 91 MHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKK 150
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRL 191
NRYFIESPF EVL++LL D VI R
Sbjct: 151 NRYFIESPFPEVLKRLLSDDVINRARF 177
>gi|18422089|ref|NP_568591.1| DNA repair helicase XPB2 [Arabidopsis thaliana]
gi|57013267|sp|Q9FUG4.1|XPB2_ARATH RecName: Full=DNA repair helicase XPB2; AltName: Full=ERCC3 homolog
2; AltName: Full=RAD25 homolog 2; Short=AtXPB2; AltName:
Full=XPB homolog 2
gi|11037022|gb|AAG27465.1|AF308595_1 putative DNA repair protein and transcription factor [Arabidopsis
thaliana]
gi|47606402|gb|AAT36214.1| putative DNA repair and transcription factor XBP2 [Arabidopsis
thaliana]
gi|332007286|gb|AED94669.1| DNA repair helicase XPB2 [Arabidopsis thaliana]
Length = 766
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 105/133 (78%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +SLYAA
Sbjct: 57 LKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 116
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGLET II L +LSKT +P I++FI+ T +YGKVKLVLK NRYFIESPF EVL+
Sbjct: 117 VSVGLETETIISVLNKLSKTKLPGEIIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLK 176
Query: 179 KLLKDPVIQDCRL 191
+LL D VI R
Sbjct: 177 RLLSDDVINRARF 189
>gi|297805510|ref|XP_002870639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316475|gb|EFH46898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 779
Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 56 EGEEKKRDF-TKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 114
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY LT +SLYAAVSVGLET II L +LSKT +P ++EFI+ T +YGKVKLVLK
Sbjct: 115 MHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKK 174
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRL 191
NRYFIESPF EVL++LL D VI R
Sbjct: 175 NRYFIESPFPEVLKRLLSDDVINRARF 201
>gi|9758045|dbj|BAB08508.1| DNA excision repair cross-complementing protein [Arabidopsis
thaliana]
Length = 754
Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 105/133 (78%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +SLYAA
Sbjct: 45 LKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 104
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGLET II L +LSKT +P I++FI+ T +YGKVKLVLK NRYFIESPF EVL+
Sbjct: 105 VSVGLETETIISVLNKLSKTKLPGEIIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLK 164
Query: 179 KLLKDPVIQDCRL 191
+LL D VI R
Sbjct: 165 RLLSDDVINRARF 177
>gi|294657393|ref|XP_459707.2| DEHA2E09174p [Debaryomyces hansenii CBS767]
gi|199432659|emb|CAG87943.2| DEHA2E09174p [Debaryomyces hansenii CBS767]
Length = 852
Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 120/167 (71%), Gaps = 11/167 (6%)
Query: 43 VPED--------EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLI 93
+PED FG D+ + + LKPDH SRP+W++P + I LESFSP+ A DFLI
Sbjct: 93 IPEDYVPDAVSKAFGKSDF-SYLKLKPDHFSRPIWISPIDARIILESFSPLAEQAQDFLI 151
Query: 94 AIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTL 153
IAEP+ RP H+HEY++TAYSLYAAVSVGLET DII L RLSK V + I+ FI T+
Sbjct: 152 TIAEPISRPSHVHEYRITAYSLYAAVSVGLETDDIISVLNRLSKVPVAESIIAFIRGATI 211
Query: 154 SYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
SYGKVKLVLKHNRY++ES A++LQ LL+DPVI R+ + TE++ T
Sbjct: 212 SYGKVKLVLKHNRYYVESTQADILQMLLRDPVIGQLRI-QSTENTTT 257
>gi|363751417|ref|XP_003645925.1| hypothetical protein Ecym_4025 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889560|gb|AET39108.1| hypothetical protein Ecym_4025 [Eremothecium cymbalariae
DBVPG#7215]
Length = 853
Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 113/152 (74%), Gaps = 4/152 (2%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F + D+ + + LKPDH SRPLW+APN G I LESFSP+ A DFL+ IAEPV RP H+H
Sbjct: 122 FRSSDF-SYLKLKPDHSSRPLWIAPNDGRIILESFSPLAEQAQDFLVTIAEPVSRPSHVH 180
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYK+TAYSLYAAVSVGLET DII L RLSK V I+ FI T+SYGKVKLV+KHNR
Sbjct: 181 EYKITAYSLYAAVSVGLETDDIIAVLDRLSKVPVASSIINFIKGATVSYGKVKLVIKHNR 240
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
YF+E+ A++LQ LLKD VI R+ DT +S
Sbjct: 241 YFVETSQADILQMLLKDSVIGSLRI--DTHES 270
>gi|388857563|emb|CCF48919.1| probable SSL2-DNA helicase [Ustilago hordei]
Length = 938
Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 128/197 (64%), Gaps = 11/197 (5%)
Query: 20 GEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFL 78
G +DED E+D E F +D+ +M LK DH SRPLW++P+ GHI L
Sbjct: 122 GSAMDEDD---------EQDQYESGELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIIL 171
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E FSP+ A DFLIAIAEPV RP +IHEYKLT YSLYAAVSVGL+ +DIIE L RLSK
Sbjct: 172 EGFSPLAEQAQDFLIAIAEPVSRPAYIHEYKLTPYSLYAAVSVGLQPNDIIEVLNRLSKV 231
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPD +V FI T S+GK+KLVLK N+YF+ES E+LQ LL+D +I R+R D +
Sbjct: 232 PVPDAVVAFIREYTASFGKIKLVLKQNKYFVESAHPEILQTLLQDSIIGAARVREDPNAA 291
Query: 199 QTLINQADKKLKAPQFG 215
++ + K +AP G
Sbjct: 292 RSGRMEVLGKTQAPTRG 308
>gi|392564211|gb|EIW57389.1| DNA helicase [Trametes versicolor FP-101664 SS1]
Length = 859
Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/141 (65%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHEYKLT YSLYA
Sbjct: 107 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTHYSLYA 166
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE L RLSK VPD I ++I TLSYGKVKLVLKHNRYF+ES E L
Sbjct: 167 AVSVGLQTEDIIEVLNRLSKVPVPDSIADYIRERTLSYGKVKLVLKHNRYFVESSHPETL 226
Query: 178 QKLLKDPVIQDCRLRRDTEDS 198
Q LLKD +I++ R+ D+
Sbjct: 227 QILLKDKIIREARVHTQVVDT 247
>gi|326521180|dbj|BAJ96793.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 762
Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 113/145 (77%), Gaps = 1/145 (0%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
+E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +
Sbjct: 47 NEVKKRDF-TKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESM 105
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEY LT +SLYAAVSVGLET+ II L +LSKT +P I+EFI+ T +YGKVKLVLK N
Sbjct: 106 HEYNLTPHSLYAAVSVGLETNTIISVLSKLSKTKLPHEIIEFIHGSTANYGKVKLVLKKN 165
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCR 190
+YF+ESPF EVL+KLL D VI R
Sbjct: 166 QYFVESPFPEVLEKLLNDDVISKAR 190
>gi|325189336|emb|CCA23856.1| DNA excision repair crosscomplementing protein similar to human
Xeroderma pigmentosum group B DNA repair protein
putative [Albugo laibachii Nc14]
Length = 811
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 116/159 (72%), Gaps = 6/159 (3%)
Query: 34 KNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLI 93
KN + DDA P +F A + +KPDH SRP+WV PNG IFLE+FSP+Y+ A+DFL+
Sbjct: 70 KNDQTDDATAPYFDF------ANLQMKPDHASRPVWVCPNGRIFLEAFSPIYKQAYDFLV 123
Query: 94 AIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTL 153
AIAEPV RPE +HEYKLT YSLYAAVSV +ET ++ L+RLSK ++P I +FI CT+
Sbjct: 124 AIAEPVSRPEFLHEYKLTPYSLYAAVSVSIETESVLNVLERLSKNNLPPVITQFIQDCTV 183
Query: 154 SYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
SYGK KLVL HN +++ES + +VLQKLL I+ R+R
Sbjct: 184 SYGKAKLVLHHNEFYVESLYPQVLQKLLSHEPIRLARIR 222
>gi|325189553|emb|CCA24040.1| unknown putative [Albugo laibachii Nc14]
Length = 788
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 116/159 (72%), Gaps = 6/159 (3%)
Query: 34 KNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLI 93
KN + DDA P +F A + +KPDH SRP+WV PNG IFLE+FSP+Y+ A+DFL+
Sbjct: 70 KNDQTDDATAPYFDF------ANLQMKPDHASRPVWVCPNGRIFLEAFSPIYKQAYDFLV 123
Query: 94 AIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTL 153
AIAEPV RPE +HEYKLT YSLYAAVSV +ET ++ L+RLSK ++P I +FI CT+
Sbjct: 124 AIAEPVSRPEFLHEYKLTPYSLYAAVSVSIETESVLNVLERLSKNNLPPVITQFIQDCTV 183
Query: 154 SYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
SYGK KLVL HN +++ES + +VLQKLL I+ R+R
Sbjct: 184 SYGKAKLVLHHNEFYVESLYPQVLQKLLSHEPIRLARIR 222
>gi|353237278|emb|CCA69255.1| probable SSL2-DNA helicase [Piriformospora indica DSM 11827]
Length = 837
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 119/162 (73%), Gaps = 6/162 (3%)
Query: 45 EDEFGAKDYR-----AQMVLKPDHKSRPLWVAPNGH-IFLESFSPVYRHAHDFLIAIAEP 98
+D A+ +R + + LK DH +RPLW+ P+ + LE+FSP+ A DFL+AI+EP
Sbjct: 93 QDHLVARMFRERQDWSNLKLKNDHAARPLWINPDDRTLILEAFSPIAEQAQDFLVAISEP 152
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
V RPE IHEYKLT YSLYAAVSVGLET+DIIE L R SK VP+ I +FI+ CT+SYGKV
Sbjct: 153 VSRPEFIHEYKLTIYSLYAAVSVGLETNDIIEVLNRYSKVPVPESIAKFIHDCTVSYGKV 212
Query: 159 KLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
KLVLKHN+YF+ES E++QKLLKDPVI+ R+ +T + T
Sbjct: 213 KLVLKHNKYFVESSHPEIVQKLLKDPVIRGARITEETMEEST 254
>gi|255537537|ref|XP_002509835.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
gi|223549734|gb|EEF51222.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
Length = 768
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 113/148 (76%)
Query: 44 PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPE 103
P+D G K +++ LK DH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 41 PDDGEGKKKDFSKLELKLDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPE 100
Query: 104 HIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK 163
+HEY LT +SLYAAVSVGLET II L +LSKT +P +++FI+ T +YGKVKLVLK
Sbjct: 101 SMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHGSTANYGKVKLVLK 160
Query: 164 HNRYFIESPFAEVLQKLLKDPVIQDCRL 191
NRY +ESPF EVL++LLKD VI RL
Sbjct: 161 KNRYLVESPFPEVLKRLLKDEVISRARL 188
>gi|448508504|ref|XP_003865944.1| hypothetical protein CORT_0A01110 [Candida orthopsilosis Co 90-125]
gi|380350282|emb|CCG20503.1| hypothetical protein CORT_0A01110 [Candida orthopsilosis Co 90-125]
Length = 848
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 117/154 (75%), Gaps = 3/154 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG+ D+ + + LKPDH +RPLW++PN I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 98 FGSSDF-SYLKLKPDHFTRPLWISPNDMRIILESFSPLAEQAQDFLITIAEPISRPSHIH 156
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYK+T +SLYAAVSVGLET+DII L RLSK V D IVEFI T+SYGK+KLVLK+NR
Sbjct: 157 EYKITPFSLYAAVSVGLETNDIISVLNRLSKVPVTDTIVEFIKAATVSYGKIKLVLKNNR 216
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
YF+ES A++LQ LLKD VI R+ + TE++ T
Sbjct: 217 YFVESTQADILQMLLKDEVIGPLRI-QSTENTIT 249
>gi|357136004|ref|XP_003569596.1| PREDICTED: DNA repair helicase XPB2-like [Brachypodium distachyon]
Length = 766
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +S
Sbjct: 55 TKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 114
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II L +LSKT +P I++FI+ T +YGKVKLVLK NRYF+ESPF
Sbjct: 115 LYAAVSVGLETTTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFP 174
Query: 175 EVLQKLLKDPVIQDCRLRRDTEDS 198
EVL+ LL D VI R R+ EDS
Sbjct: 175 EVLKTLLNDEVI--ARARQSPEDS 196
>gi|389749796|gb|EIM90967.1| DNA repair helicase rad25 [Stereum hirsutum FP-91666 SS1]
Length = 860
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH SRPLW++P +GHI LE+FSP+ A DFLIAI+EPV RP IHEYKLT+YSLYA
Sbjct: 105 LKSDHASRPLWISPEDGHIILEAFSPIAEQAQDFLIAISEPVSRPSFIHEYKLTSYSLYA 164
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE L RLSK VP+ I FI TLSYGKVKLVLKHN+YF+ES + L
Sbjct: 165 AVSVGLQTEDIIEVLNRLSKVPVPEAITTFIRERTLSYGKVKLVLKHNKYFVESSHPDTL 224
Query: 178 QKLLKDPVIQDCRLRRDTEDSQ 199
Q LLKD +I++ R+ DS+
Sbjct: 225 QLLLKDSIIRNARVTTQATDSK 246
>gi|71019971|ref|XP_760216.1| hypothetical protein UM04069.1 [Ustilago maydis 521]
gi|46099785|gb|EAK85018.1| hypothetical protein UM04069.1 [Ustilago maydis 521]
Length = 940
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 120/172 (69%), Gaps = 2/172 (1%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPE 103
E F +D+ +M LK DH SRPLW++P+ GHI LE FSP+ A DFLIAIAEPV RP
Sbjct: 137 ELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIILEGFSPLAEQAQDFLIAIAEPVSRPA 195
Query: 104 HIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK 163
+IHEYKLT YSLYAAVSVGL+ DIIE L RLSK VPD ++EFI T S+GK+KLVLK
Sbjct: 196 YIHEYKLTPYSLYAAVSVGLQPDDIIEVLNRLSKVPVPDAVLEFIREYTASFGKIKLVLK 255
Query: 164 HNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
N+YF+ES E+LQ LL+D +I R+R D +++ + K +AP G
Sbjct: 256 QNKYFVESAHPEILQTLLRDSIIGTARVREDPNAAKSGRMEVLGKTQAPTRG 307
>gi|299115227|emb|CBN74062.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 884
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 109/141 (77%), Gaps = 1/141 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
KD R M LKP H RP+WV P+GHI+LE+ SP Y A+DFL+AIAEPV RPE +HEYKL
Sbjct: 117 KDCR-DMQLKPQHTDRPIWVLPDGHIYLEASSPYYHQAYDFLVAIAEPVSRPEFVHEYKL 175
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T YSLYAAV+V ++T I++ L RLSKT VPD + FI CT+SYGK KLVLKHN+++IE
Sbjct: 176 TPYSLYAAVAVSIDTDSIVKVLNRLSKTPVPDSVETFIRACTVSYGKAKLVLKHNKHYIE 235
Query: 171 SPFAEVLQKLLKDPVIQDCRL 191
SPF EVL++LLK+P + RL
Sbjct: 236 SPFPEVLRELLKNPTVSQARL 256
>gi|410078858|ref|XP_003957010.1| hypothetical protein KAFR_0D02280 [Kazachstania africana CBS 2517]
gi|372463595|emb|CCF57875.1| hypothetical protein KAFR_0D02280 [Kazachstania africana CBS 2517]
Length = 833
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 126/180 (70%), Gaps = 12/180 (6%)
Query: 36 VEKDDAAVPED--------EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYR 86
++ ++ +PED F + D+ + + L+PDH SRP+W++P +G I LESFSP+
Sbjct: 84 LQSGNSDIPEDFKPDTVSGMFRSHDF-SYLRLRPDHASRPIWISPSDGRIILESFSPLAE 142
Query: 87 HAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVE 146
A DFL+ IAEP+ RP HIHEYK+TAYSLYAAVSVGLET DI+ L RLSK V I++
Sbjct: 143 QAQDFLVTIAEPISRPSHIHEYKITAYSLYAAVSVGLETDDILSVLDRLSKVPVAQSIID 202
Query: 147 FINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQAD 206
FI T+SYGKVKLV+KHNRYF+E+ A++LQ LLKDP+I R+ D++ Q + AD
Sbjct: 203 FIKSATVSYGKVKLVIKHNRYFVETSQADILQMLLKDPIIGPLRI--DSDQQQQVSKMAD 260
>gi|45198798|ref|NP_985827.1| AFR280Wp [Ashbya gossypii ATCC 10895]
gi|44984827|gb|AAS53651.1| AFR280Wp [Ashbya gossypii ATCC 10895]
gi|374109058|gb|AEY97964.1| FAFR280Wp [Ashbya gossypii FDAG1]
Length = 830
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/145 (64%), Positives = 109/145 (75%), Gaps = 2/145 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F + D+ + + LKPDH SRPLW+APN G I LESFSP+ A DFL+ IAEPV RP H+H
Sbjct: 104 FRSSDF-SYLKLKPDHASRPLWIAPNDGRIILESFSPLAEQAQDFLVTIAEPVSRPSHVH 162
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYK+TAYSLYAAVSVGLET DII L RLSK V IV FI T+SYGKVKLV+KHNR
Sbjct: 163 EYKITAYSLYAAVSVGLETDDIIAVLDRLSKVPVASSIVNFIKGATVSYGKVKLVIKHNR 222
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRL 191
YF+E+ A++LQ LLKD VI R+
Sbjct: 223 YFVETSQADILQMLLKDKVIGPLRI 247
>gi|255714519|ref|XP_002553541.1| KLTH0E01210p [Lachancea thermotolerans]
gi|238934923|emb|CAR23104.1| KLTH0E01210p [Lachancea thermotolerans CBS 6340]
Length = 839
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRPLW++P +G + LESFSP+ A DFL+ IAEPV RP HIHEYK+TAYSLYA
Sbjct: 120 LKPDHASRPLWISPGDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIHEYKITAYSLYA 179
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 180 AVSVGLETDDIIAVLDRLSKVPVAPSIINFIKSATVSYGKVKLVIKHNRYFVETSQADIL 239
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LLKDPVI R+ D
Sbjct: 240 QMLLKDPVIGSLRIDSD 256
>gi|190348816|gb|EDK41352.2| hypothetical protein PGUG_05450 [Meyerozyma guilliermondii ATCC
6260]
Length = 840
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 110/148 (74%), Gaps = 4/148 (2%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNGH---IFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
FG D+ + + LKPDH +RPLW++P G I LESFSP+ A DFLI IAEP+ RP H
Sbjct: 106 FGRSDF-SYLKLKPDHFTRPLWISPTGGRIIIILESFSPLAEQAQDFLITIAEPISRPSH 164
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
IHE++LT YSLYAAVSVGLET DII L RLSK V + I+EFI T+SYGKVKLVLKH
Sbjct: 165 IHEFQLTVYSLYAAVSVGLETEDIISVLNRLSKVPVAESILEFIRSATVSYGKVKLVLKH 224
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRLR 192
NRYF+ES A+VLQ LLKD VI R++
Sbjct: 225 NRYFVESTQADVLQMLLKDEVIGPLRIQ 252
>gi|149246257|ref|XP_001527598.1| DNA repair helicase RAD25 [Lodderomyces elongisporus NRRL YB-4239]
gi|146447552|gb|EDK41940.1| DNA repair helicase RAD25 [Lodderomyces elongisporus NRRL YB-4239]
Length = 890
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/199 (52%), Positives = 132/199 (66%), Gaps = 19/199 (9%)
Query: 7 KKEVEDESYVD----DPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPD 62
K +++D +Y D D + D +P A K+ FG D+ + + LKPD
Sbjct: 77 KNDLDDNNYSDEDLIDITPDIPADYIPDAVSKS------------FGRADF-SYLKLKPD 123
Query: 63 HKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
H SRP+W++P+ I LESFSP+ A DFLI IAEP+ RP HIHEY++TAYSLYAAVSV
Sbjct: 124 HFSRPIWISPSDLRIILESFSPLAEQAQDFLITIAEPISRPSHIHEYRITAYSLYAAVSV 183
Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
GLET DII L RLSK V D IV+FI T+SYGKVKLVLK+NRYF+ES A++LQ LL
Sbjct: 184 GLETDDIISVLNRLSKVPVADSIVQFIKAATVSYGKVKLVLKNNRYFVESTQADILQMLL 243
Query: 182 KDPVIQDCRLRRDTEDSQT 200
KD VI R+ + TE++ T
Sbjct: 244 KDEVIGPLRM-QSTENTVT 261
>gi|194390514|dbj|BAG62016.1| unnamed protein product [Homo sapiens]
Length = 161
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/124 (70%), Positives = 104/124 (83%), Gaps = 2/124 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSL AAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLCAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFI 148
++FI
Sbjct: 153 MQFI 156
>gi|348671252|gb|EGZ11073.1| hypothetical protein PHYSODRAFT_563851 [Phytophthora sojae]
Length = 818
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/165 (55%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 33 KKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFL 92
K N A D G D+ + + +KPDH++RP+WV PNG IFLE+FSP+Y+ A+DFL
Sbjct: 64 KLNEVAQSAGGDGDASGYYDF-STLDMKPDHEARPVWVCPNGRIFLEAFSPIYKQAYDFL 122
Query: 93 IAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCT 152
+AI+EPV RPE +HEYKLT YSLYAAVSV +ET I++ L+RLSK +P GIV FI CT
Sbjct: 123 VAISEPVSRPEFLHEYKLTPYSLYAAVSVAIETESILKVLERLSKNRLPAGIVAFIKDCT 182
Query: 153 LSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
LSYGK KLVL HN +++ES + EVL+KLL+ I+ R++ ED
Sbjct: 183 LSYGKAKLVLHHNEFYVESLYPEVLRKLLEHEHIRAARVKETAED 227
>gi|401838864|gb|EJT42288.1| SSL2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 872
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 111/153 (72%), Gaps = 6/153 (3%)
Query: 59 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++PN G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 152 LRPDHASRPLWISPNDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 211
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 212 AVSVGLETEDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 271
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLINQADKKLK 210
Q LL D VI R+ DS + AD+ L+
Sbjct: 272 QMLLNDSVIGPLRI-----DSDHQVQLADETLQ 299
>gi|366995011|ref|XP_003677269.1| hypothetical protein NCAS_0G00290 [Naumovozyma castellii CBS 4309]
gi|342303138|emb|CCC70916.1| hypothetical protein NCAS_0G00290 [Naumovozyma castellii CBS 4309]
Length = 837
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/139 (62%), Positives = 107/139 (76%), Gaps = 1/139 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 124 LRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 183
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DI+ L RLSK V I++FI T+SYGKVKLV+KHNRYF+E+ AE+L
Sbjct: 184 AVSVGLETDDILSVLDRLSKVPVAQSIIDFIEGATISYGKVKLVIKHNRYFVETTQAEIL 243
Query: 178 QKLLKDPVIQDCRLRRDTE 196
Q LLKDP+I R+ D +
Sbjct: 244 QMLLKDPIIGPLRIDSDQQ 262
>gi|254566415|ref|XP_002490318.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Komagataella pastoris GS115]
gi|238030114|emb|CAY68037.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Komagataella pastoris GS115]
gi|328350713|emb|CCA37113.1| DNA excision repair protein ERCC-3 [Komagataella pastoris CBS 7435]
Length = 820
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 111/149 (74%), Gaps = 2/149 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG+ D+ + + LKPDH SRP+W++PN G I LESFSP+ A DFL+ IAEP+ RP IH
Sbjct: 77 FGSSDF-SYLKLKPDHASRPIWISPNDGRIILESFSPLSEQAQDFLVTIAEPISRPSFIH 135
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++TAYSLYAAVSVGLET DII L RLSK V IV FI T+SYGKVKLVLK+NR
Sbjct: 136 EYRITAYSLYAAVSVGLETDDIISVLNRLSKVPVAPSIVNFIRSATISYGKVKLVLKNNR 195
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDT 195
Y +ES A++LQ LLKD VI R++ DT
Sbjct: 196 YHVESSQADILQMLLKDEVIGQLRVKSDT 224
>gi|395332204|gb|EJF64583.1| DNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 862
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/138 (66%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Query: 55 AQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAY 113
A + LKPDH SRPLW++P +GHI LE+FSP+ A DFL+AIAEPV RP IHEYKLT+Y
Sbjct: 103 AWLHLKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAIAEPVSRPAFIHEYKLTSY 162
Query: 114 SLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPF 173
SLYAAVSVGL+T DIIE L RLSK VP+ + FI TLSYGKVKLVLKHN+YF+ES
Sbjct: 163 SLYAAVSVGLQTEDIIEVLNRLSKVPVPESLDSFIRERTLSYGKVKLVLKHNKYFVESSH 222
Query: 174 AEVLQKLLKDPVIQDCRL 191
E LQ LLKD VI++ R+
Sbjct: 223 PETLQFLLKDRVIREARV 240
>gi|167523483|ref|XP_001746078.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775349|gb|EDQ88973.1| predicted protein [Monosiga brevicollis MX1]
Length = 835
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 114/146 (78%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
DE+GA D R + LKPDH +RP+ V P+G IFLE+FSP+Y+ A+DFLIAIAEP+CRPEHI
Sbjct: 76 DEYGAIDMRHALELKPDHPNRPILVTPDGQIFLETFSPIYKQAYDFLIAIAEPICRPEHI 135
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEY++T+YSLYAA SVG++T DI++YL RL KT +P + + I CT YGKVKLVL+ N
Sbjct: 136 HEYRITSYSLYAAASVGIQTDDIMKYLDRLCKTDLPLPVRKDIRTCTERYGKVKLVLRSN 195
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCRL 191
RY +E+ + + LLK+PVI++ ++
Sbjct: 196 RYIVETNDEKAISDLLKNPVIRNAKI 221
>gi|168044023|ref|XP_001774482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674194|gb|EDQ60706.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 734
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 107/142 (75%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
++ LKPDH +RPLWV +G IFLE+FS +Y+ A+DFLIAIAEPVCRPE +HEY LT +S
Sbjct: 18 TKLELKPDHSNRPLWVCADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 77
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II L RLSKT +P I++FI T +YGKVKLVL+ NRYF+ESPF
Sbjct: 78 LYAAVSVGLETETIITVLDRLSKTKLPKEILDFIRGSTQNYGKVKLVLQKNRYFVESPFP 137
Query: 175 EVLQKLLKDPVIQDCRLRRDTE 196
EVLQ LL+D I RL E
Sbjct: 138 EVLQALLRDDTISRARLASSEE 159
>gi|242054073|ref|XP_002456182.1| hypothetical protein SORBIDRAFT_03g031750 [Sorghum bicolor]
gi|241928157|gb|EES01302.1| hypothetical protein SORBIDRAFT_03g031750 [Sorghum bicolor]
Length = 767
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 113/160 (70%), Gaps = 12/160 (7%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
++ LK DH SRPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +S
Sbjct: 55 TKLELKVDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 114
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II L +LSKT +P I++FI+ T +YGKVKLVLK NRYF+ESPF
Sbjct: 115 LYAAVSVGLETSTIISVLSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFP 174
Query: 175 EVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
EVL LL+D VI R R EDS L AP F
Sbjct: 175 EVLSNLLRDEVIS--RARISPEDS----------LGAPSF 202
>gi|146412918|ref|XP_001482430.1| hypothetical protein PGUG_05450 [Meyerozyma guilliermondii ATCC
6260]
Length = 840
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 110/148 (74%), Gaps = 4/148 (2%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNGH---IFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
FG D+ + + LKPDH +RPLW++P G I LESFSP+ A DFLI IAEP+ RP H
Sbjct: 106 FGRLDF-SYLKLKPDHFTRPLWISPTGGRIIIILESFSPLAEQAQDFLITIAEPISRPSH 164
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
IHE++LT YSLYAAVSVGLET DII L RLSK V + I+EFI T+SYGKVKLVLKH
Sbjct: 165 IHEFQLTVYSLYAAVSVGLETEDIISVLNRLSKVPVAESILEFIRSATVSYGKVKLVLKH 224
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRLR 192
NRYF+ES A+VLQ LLKD VI R++
Sbjct: 225 NRYFVESTQADVLQMLLKDEVIGPLRIQ 252
>gi|320583619|gb|EFW97832.1| DNA repair helicase RAD25 [Ogataea parapolymorpha DL-1]
Length = 335
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 114/160 (71%), Gaps = 6/160 (3%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH +RP+W++P +G IFLE SP+ A DFL+ IAEPV RP IH
Sbjct: 90 FGKADF-SYLKLKPDHAARPIWISPLDGKIFLEGLSPLSEQAQDFLVTIAEPVSRPSFIH 148
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++T +SLYAAVSVGLET DII L RLSK + +V FI T+SYGKVKLVLKHNR
Sbjct: 149 EYRITTHSLYAAVSVGLETDDIISVLSRLSKVPLASSVVNFIKQATVSYGKVKLVLKHNR 208
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQAD 206
YF+ESP A++LQ LLKD VI R+ + S+T + +D
Sbjct: 209 YFVESPQADILQMLLKDEVIGKLRI----QSSETTVTMSD 244
>gi|414880902|tpg|DAA58033.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
Length = 767
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 113/160 (70%), Gaps = 12/160 (7%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
++ LK DH SRPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +S
Sbjct: 55 TKLELKVDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 114
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II L +LSKT +P I++FI+ T +YGKVKLVLK NRYF+ESPF
Sbjct: 115 LYAAVSVGLETSTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFP 174
Query: 175 EVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
EVL LL+D VI R R EDS L AP F
Sbjct: 175 EVLSTLLRDEVIS--RARISPEDS----------LGAPSF 202
>gi|301094774|ref|XP_002896491.1| TFIIH basal transcription factor complex helicase XPB subunit
[Phytophthora infestans T30-4]
gi|262109466|gb|EEY67518.1| TFIIH basal transcription factor complex helicase XPB subunit
[Phytophthora infestans T30-4]
Length = 820
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 111/139 (79%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
+KPDH++RP+WV PNG IFLE+FSP+Y+ A+DFL+AI+EPV RPE +HEYKLT YSLYAA
Sbjct: 89 MKPDHEARPVWVCPNGRIFLEAFSPIYKQAYDFLVAISEPVSRPEFLHEYKLTPYSLYAA 148
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSV +ET I++ L+RLSK +P+GIV FI CTLSYGK KLVL HN +++ES + +VL+
Sbjct: 149 VSVAIETESILKVLERLSKNRLPEGIVAFIKDCTLSYGKAKLVLHHNEFYVESLYPKVLR 208
Query: 179 KLLKDPVIQDCRLRRDTED 197
KLL+ I+ R++ ED
Sbjct: 209 KLLEHEHIRAARVKETAED 227
>gi|443897666|dbj|GAC75006.1| RNA pRNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, 3'-5' helicase subunit
SSL2olymerase II transcription initiation [Pseudozyma
antarctica T-34]
Length = 925
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 121/172 (70%), Gaps = 2/172 (1%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPE 103
E F +D+ +M LK DH SRPLW++P+ GHI LE FSP+ A DFLIAIAEPV RP
Sbjct: 134 ELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIILEGFSPLAEQAQDFLIAIAEPVSRPA 192
Query: 104 HIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK 163
+IHEYKLT YSLYAAVSVGL+ +DIIE L RLSK VPD +++FI T S+GK+KLVLK
Sbjct: 193 YIHEYKLTPYSLYAAVSVGLQPNDIIEVLNRLSKVPVPDAVLDFIREYTASFGKIKLVLK 252
Query: 164 HNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
N+YF+ES E+LQ LL+D +I R+R D +++ + K +AP G
Sbjct: 253 QNKYFVESAHPEILQTLLQDSIIGAARVREDPNAARSGRMEVLGKAQAPTRG 304
>gi|225426192|ref|XP_002273444.1| PREDICTED: DNA repair helicase XPB1-like [Vitis vinifera]
Length = 771
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 38 KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAE 97
+DD E E +D+ ++ LK DH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAE
Sbjct: 38 EDDYRDGEKEGKKRDF-TKLELKVDHSNRPLWACADGRIFLETFSPLYKQAYDFLIAIAE 96
Query: 98 PVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGK 157
PVCRPE +HEY LT +SLYAAVSVGLET II L +LSKT +P +++FI+ T +YGK
Sbjct: 97 PVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKTKLPKEMIDFIHASTANYGK 156
Query: 158 VKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
VKLVLK NRYF+ESPF EVL+ LL+D VI R+
Sbjct: 157 VKLVLKKNRYFVESPFPEVLKTLLRDEVISRSRI 190
>gi|426199291|gb|EKV49216.1| hypothetical protein AGABI2DRAFT_218349 [Agaricus bisporus var.
bisporus H97]
Length = 855
Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 116/168 (69%), Gaps = 11/168 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F +D+ + + LK DH SRP+W++P+ GHI LE+FSP+ A DFL AI+EPV RP IH
Sbjct: 94 FNEQDF-SWLHLKADHTSRPIWISPDDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIH 152
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYKLT+YSLYAAVSVGL+T DIIE L RLSK VPD I FI TLSYGKVKLVLKHN+
Sbjct: 153 EYKLTSYSLYAAVSVGLQTEDIIEVLNRLSKVPVPDSITSFIRDQTLSYGKVKLVLKHNK 212
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
Y++ES E LQ LLKD VI++ RL Q D +KA F
Sbjct: 213 YYVESSHPETLQLLLKDRVIREARL---------FSIQQDNSIKATTF 251
>gi|414880901|tpg|DAA58032.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
Length = 702
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 113/160 (70%), Gaps = 12/160 (7%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
++ LK DH SRPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +S
Sbjct: 55 TKLELKVDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 114
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II L +LSKT +P I++FI+ T +YGKVKLVLK NRYF+ESPF
Sbjct: 115 LYAAVSVGLETSTIISVLSKLSKTKLPREIIDFIHGSTANYGKVKLVLKKNRYFVESPFP 174
Query: 175 EVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
EVL LL+D VI R R EDS L AP F
Sbjct: 175 EVLSTLLRDEVIS--RARISPEDS----------LGAPSF 202
>gi|424513709|emb|CCO66331.1| predicted protein [Bathycoccus prasinos]
Length = 962
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/144 (60%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 107
FG D+ + + LK DH +RPLWV +G IFLESFSP+Y+ A+DFLIA+AEPVCRPEHIHE
Sbjct: 168 FGENDF-SDLSLKVDHPNRPLWVCSDGRIFLESFSPLYKAAYDFLIAVAEPVCRPEHIHE 226
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y LT +SLYAAVS+GL T I E L RLSKT++ + + FI CT +YGKVKLVLK N++
Sbjct: 227 YVLTPHSLYAAVSIGLTTEKIAEVLDRLSKTNLSEEVKHFIAACTKNYGKVKLVLKRNKF 286
Query: 168 FIESPFAEVLQKLLKDPVIQDCRL 191
F+ESP A++L+KLL+D V++ R+
Sbjct: 287 FLESPDAKILEKLLQDEVVRSARV 310
>gi|50309063|ref|XP_454537.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643672|emb|CAG99624.1| KLLA0E13025p [Kluyveromyces lactis]
Length = 858
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 116/165 (70%), Gaps = 7/165 (4%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F D+ + + LKPDH SRPLW++PN G + LESFSP+ A DFL+ IAEPV RP HIH
Sbjct: 131 FKTNDF-SYLKLKPDHASRPLWISPNDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIH 189
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++TAYSLYAAVSVGLET DII L RLSK V I+ FI T+SYGKVKLV+KHNR
Sbjct: 190 EYRITAYSLYAAVSVGLETEDIIAVLDRLSKVPVAPSIINFIKSATVSYGKVKLVIKHNR 249
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKA 211
YF+E+ A++LQ LL D +I + R+ D+ ++ A KK A
Sbjct: 250 YFVETSQADILQMLLNDQIIGNLRI-----DTDAAVDAAVKKTMA 289
>gi|401625330|gb|EJS43343.1| ssl2p [Saccharomyces arboricola H-6]
Length = 843
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++PN G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 123 LRPDHASRPLWISPNDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 182
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 183 AVSVGLETDDIISVLDRLSKVPVAESILNFIRGATISYGKVKLVIKHNRYFVETTQADIL 242
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 243 QMLLNDSVIGPLRIDSD 259
>gi|449543176|gb|EMD34153.1| hypothetical protein CERSUDRAFT_117644 [Ceriporiopsis subvermispora
B]
Length = 862
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Query: 59 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH SRPLW++P+ GHI LE+FSP+ A DFLIAI+EPV RP IHEYKLT+YSLYA
Sbjct: 108 LKNDHGSRPLWISPDDGHIILENFSPIAEQAQDFLIAISEPVSRPTFIHEYKLTSYSLYA 167
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE L RLSK +P+ IV FI TLSYGKVKLVLKHN+Y++ES E L
Sbjct: 168 AVSVGLQTEDIIEVLNRLSKVPIPETIVSFIRERTLSYGKVKLVLKHNKYYVESSHPETL 227
Query: 178 QKLLKDPVIQDCRLRRDTEDS 198
Q LLKD VI++ R+ D+
Sbjct: 228 QILLKDRVIREARVHSQIVDN 248
>gi|19114386|ref|NP_593474.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces pombe 972h-]
gi|46395601|sp|O13768.1|ERCC3_SCHPO RecName: Full=Probable DNA repair helicase ercc3
gi|2370478|emb|CAB11506.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces pombe]
Length = 804
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E +D+SY P ++ + N + + FG D+ + LK DH +RPL
Sbjct: 32 EEDDDSYKPAPRIRINNNKTKAQTTTNSNEARQSGISAMFGQNDFSNLLGLKLDHTARPL 91
Query: 69 WVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
W+ P +G I LE+FSP+ A DFL+ I+EPV RP IHEY++TAYSLYAAVSVGL+T D
Sbjct: 92 WINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIHEYRITAYSLYAAVSVGLKTED 151
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQ 187
II L RLSKT +P IV+FI CT+SYGKVKLVLK NRYFIES A VL+ LL+DPVI
Sbjct: 152 IIAVLDRLSKTPIPPSIVDFIRACTVSYGKVKLVLKKNRYFIESGDASVLRLLLRDPVIG 211
Query: 188 DCRL 191
R+
Sbjct: 212 PLRI 215
>gi|367010132|ref|XP_003679567.1| hypothetical protein TDEL_0B02270 [Torulaspora delbrueckii]
gi|359747225|emb|CCE90356.1| hypothetical protein TDEL_0B02270 [Torulaspora delbrueckii]
Length = 842
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/134 (64%), Positives = 104/134 (77%), Gaps = 1/134 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH +RP+W++P +G + LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 127 LRPDHAARPIWISPSDGRVILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 186
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 187 AVSVGLETDDIISVLDRLSKVPVAPSIINFIKSATVSYGKVKLVIKHNRYFVETTQADIL 246
Query: 178 QKLLKDPVIQDCRL 191
Q LLKDPVI RL
Sbjct: 247 QMLLKDPVIGTLRL 260
>gi|367001645|ref|XP_003685557.1| hypothetical protein TPHA_0E00270 [Tetrapisispora phaffii CBS 4417]
gi|357523856|emb|CCE63123.1| hypothetical protein TPHA_0E00270 [Tetrapisispora phaffii CBS 4417]
Length = 856
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRP+W++P +G + LESFSP+ A DFL+ IAEPV RP HIHEY++TAYSLYA
Sbjct: 139 LRPDHASRPIWISPSDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIHEYRITAYSLYA 198
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DI+ L RLSK V I+ FI T+SYGKVKLV+KHNRYF+E+ AE+L
Sbjct: 199 AVSVGLETEDIVSVLDRLSKVPVAPSIINFIKSATVSYGKVKLVIKHNRYFVETSQAEIL 258
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKA 211
Q LLKD VI R+ D I + D ++ A
Sbjct: 259 QMLLKDSVIGPLRIDADQNQQNQGIIRKDGEVSA 292
>gi|297742218|emb|CBI34367.3| unnamed protein product [Vitis vinifera]
Length = 850
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 38 KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAE 97
+DD E E +D+ ++ LK DH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAE
Sbjct: 38 EDDYRDGEKEGKKRDF-TKLELKVDHSNRPLWACADGRIFLETFSPLYKQAYDFLIAIAE 96
Query: 98 PVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGK 157
PVCRPE +HEY LT +SLYAAVSVGLET II L +LSKT +P +++FI+ T +YGK
Sbjct: 97 PVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKTKLPKEMIDFIHASTANYGK 156
Query: 158 VKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
VKLVLK NRYF+ESPF EVL+ LL+D VI R+
Sbjct: 157 VKLVLKKNRYFVESPFPEVLKTLLRDEVISRSRI 190
>gi|336383510|gb|EGO24659.1| hypothetical protein SERLADRAFT_438280 [Serpula lacrymans var.
lacrymans S7.9]
Length = 845
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 113/163 (69%), Gaps = 16/163 (9%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRP+W++P +GHI LE+FSP+ A DFL+AI+EPV RP IHEYKLT+YSLYA
Sbjct: 104 LKPDHASRPIWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 163
Query: 118 AVSVGLETHDIIEYLKRL------SKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIES 171
AVSVGL+T DIIE L RL SK VP+ I+ FI TLSYGKVKLVLKHN+YF+ES
Sbjct: 164 AVSVGLQTEDIIEVLNRLSKEFKPSKVPVPESIIGFIRERTLSYGKVKLVLKHNKYFVES 223
Query: 172 PFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
E LQ LLKD I+D R+ T AD +KA F
Sbjct: 224 SHPETLQLLLKDRTIRDARVVSQT---------ADNSIKAATF 257
>gi|50293447|ref|XP_449135.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528448|emb|CAG62105.1| unnamed protein product [Candida glabrata]
Length = 862
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 104/134 (77%), Gaps = 1/134 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 144 LKPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 203
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 204 AVSVGLETDDIISVLDRLSKVPVAQSIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 263
Query: 178 QKLLKDPVIQDCRL 191
+ LL+DP+I R+
Sbjct: 264 KMLLRDPIIGPLRI 277
>gi|388582732|gb|EIM23036.1| DNA repair helicase rad25 [Wallemia sebi CBS 633.66]
Length = 772
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 108/145 (74%), Gaps = 2/145 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +Y + LK DH +RPLWV+P +GHI LE FSP+ A DFL+AIAEPV R +
Sbjct: 12 FGNHNY-GDLPLKADHANRPLWVSPEDGHIILEGFSPIAEQAQDFLVAIAEPVSRTSLME 70
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYK+T YSLYAAVSVGLET DIIE L RLSK VP I++FI CT+SYGKVKLVLKHNR
Sbjct: 71 EYKVTPYSLYAAVSVGLETADIIEVLNRLSKVPVPQSIIDFIKDCTMSYGKVKLVLKHNR 130
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRL 191
YF+ES E LQ LL+D +I++ R+
Sbjct: 131 YFVESADPETLQMLLRDQIIKNARV 155
>gi|172327|gb|AAA34942.1| DNA helicase [Saccharomyces cerevisiae]
Length = 843
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 123 LRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 182
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 183 AVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 242
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 243 QMLLNDSVIGPLRIDSD 259
>gi|6322048|ref|NP_012123.1| Ssl2p [Saccharomyces cerevisiae S288c]
gi|267033|sp|Q00578.1|RAD25_YEAST RecName: Full=DNA repair helicase RAD25; AltName: Full=General
transcription and DNA repair factor IIH subunit RAD25;
Short=TFIIH subunit RAD25; AltName: Full=Suppressor of
stem-loop mutation 2
gi|172724|gb|AAA35102.1| encodes human ERCC-3 homologue [Saccharomyces cerevisiae]
gi|557780|emb|CAA86135.1| DNA repair helicase [Saccharomyces cerevisiae]
gi|51013217|gb|AAT92902.1| YIL143C [Saccharomyces cerevisiae]
gi|285812511|tpg|DAA08410.1| TPA: Ssl2p [Saccharomyces cerevisiae S288c]
Length = 843
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 123 LRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 182
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 183 AVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 242
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 243 QMLLNDSVIGPLRIDSD 259
>gi|156845686|ref|XP_001645733.1| hypothetical protein Kpol_1043p66 [Vanderwaltozyma polyspora DSM
70294]
gi|156116400|gb|EDO17875.1| hypothetical protein Kpol_1043p66 [Vanderwaltozyma polyspora DSM
70294]
Length = 856
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 113/150 (75%), Gaps = 4/150 (2%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F + D+ + + L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEPV RP HIH
Sbjct: 126 FKSHDF-SYLKLRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPVSRPSHIH 184
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++TAYSLYAAVSVGLET DI+ L RLSK V IV FI T+SYGKVKLV+KHNR
Sbjct: 185 EYRITAYSLYAAVSVGLETDDILSVLDRLSKVPVAPSIVNFIRSATVSYGKVKLVIKHNR 244
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
YF+E+ A++LQ LLKD VI RLR DT+
Sbjct: 245 YFVETTQADILQMLLKDTVI--GRLRIDTD 272
>gi|164655445|ref|XP_001728852.1| hypothetical protein MGL_4019 [Malassezia globosa CBS 7966]
gi|159102738|gb|EDP41638.1| hypothetical protein MGL_4019 [Malassezia globosa CBS 7966]
Length = 815
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 112/155 (72%), Gaps = 2/155 (1%)
Query: 39 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAE 97
DD +D+ ++M LK DH SRPLW++P+ GHI LE F+ + A DFLIAIAE
Sbjct: 2 DDGGAGVSSILRRDF-SRMPLKLDHNSRPLWISPDDGHIILEGFNALAEQAQDFLIAIAE 60
Query: 98 PVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGK 157
PV RP +HEYKLT YSLYAAVSVGLE DIIE L RLSK SVP +++FI T+S+GK
Sbjct: 61 PVSRPNFVHEYKLTPYSLYAAVSVGLEPDDIIEVLNRLSKVSVPKSVLDFIREYTMSFGK 120
Query: 158 VKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
+KLVLK NRYF+ES E+LQ LL+DPVI + R+R
Sbjct: 121 IKLVLKQNRYFVESSHPEILQMLLRDPVISEARVR 155
>gi|259147110|emb|CAY80363.1| Ssl2p [Saccharomyces cerevisiae EC1118]
Length = 843
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 123 LRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 182
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 183 AVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 242
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 243 QMLLNDSVIGPLRIDSD 259
>gi|190406354|gb|EDV09621.1| DNA repair helicase RAD25 [Saccharomyces cerevisiae RM11-1a]
gi|323354539|gb|EGA86375.1| Ssl2p [Saccharomyces cerevisiae VL3]
Length = 843
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 123 LRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 182
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 183 AVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 242
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 243 QMLLNDSVIGPLRIDSD 259
>gi|409048592|gb|EKM58070.1| hypothetical protein PHACADRAFT_252066 [Phanerochaete carnosa
HHB-10118-sp]
Length = 835
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/134 (66%), Positives = 105/134 (78%), Gaps = 1/134 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHEYKLT+YSLYA
Sbjct: 80 LKSDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 139
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE L RLSK VP+ I FI TLSYGKVKLVLKHN+Y++ES E L
Sbjct: 140 AVSVGLQTEDIIEVLNRLSKVPVPESITTFIRERTLSYGKVKLVLKHNKYYVESSHPETL 199
Query: 178 QKLLKDPVIQDCRL 191
Q LLKD VI++ R+
Sbjct: 200 QILLKDRVIREARV 213
>gi|151943023|gb|EDN61358.1| DNA helicase [Saccharomyces cerevisiae YJM789]
gi|256270224|gb|EEU05444.1| Ssl2p [Saccharomyces cerevisiae JAY291]
gi|349578814|dbj|GAA23978.1| K7_Ssl2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298773|gb|EIW09869.1| Ssl2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 843
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 123 LRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 182
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 183 AVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 242
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 243 QMLLNDSVIGPLRIDSD 259
>gi|444323403|ref|XP_004182342.1| hypothetical protein TBLA_0I01650 [Tetrapisispora blattae CBS 6284]
gi|387515389|emb|CCH62823.1| hypothetical protein TBLA_0I01650 [Tetrapisispora blattae CBS 6284]
Length = 850
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/139 (61%), Positives = 104/139 (74%), Gaps = 1/139 (0%)
Query: 59 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRP+W+ PN G + LESFSP+ A DFL+ IAEPV RP HIHEYK+TAYSLYA
Sbjct: 124 LRPDHSSRPIWICPNDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIHEYKITAYSLYA 183
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 184 AVSVGLETDDIISVLDRLSKVPVAPSIINFIKGATVSYGKVKLVIKHNRYFVETTQADIL 243
Query: 178 QKLLKDPVIQDCRLRRDTE 196
Q LL+D +I R+ D +
Sbjct: 244 QMLLRDSIIGPLRIDNDQQ 262
>gi|343425159|emb|CBQ68696.1| probable SSL2-DNA helicase [Sporisorium reilianum SRZ2]
Length = 951
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 119/172 (69%), Gaps = 2/172 (1%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPE 103
E F +D+ +M LK DH SRPLW++P+ GHI LE FS + A DFLIAIAEPV RP
Sbjct: 145 ELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIILEGFSALAEQAQDFLIAIAEPVSRPA 203
Query: 104 HIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK 163
+IHEYKLT YSLYAAVSVGL+ +DIIE L RLSK VPD +++FI T S+GK+KLVLK
Sbjct: 204 YIHEYKLTPYSLYAAVSVGLQPNDIIEVLNRLSKVPVPDAVLDFIREYTASFGKIKLVLK 263
Query: 164 HNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
N+YF+ES E+LQ LL+D I R+R D +++ + K +AP G
Sbjct: 264 QNKYFVESAHPEILQTLLQDSTIGAARVREDPNAAKSGRMEVLGKTQAPTRG 315
>gi|302684387|ref|XP_003031874.1| hypothetical protein SCHCODRAFT_68127 [Schizophyllum commune H4-8]
gi|300105567|gb|EFI96971.1| hypothetical protein SCHCODRAFT_68127 [Schizophyllum commune H4-8]
Length = 849
Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 109/157 (69%), Gaps = 10/157 (6%)
Query: 59 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH SRPLW+ P+ GHI LE FSP+ A DFL AI+EPV RPE +HEYKLT+YSLYA
Sbjct: 99 LKSDHASRPLWICPDDGHIILEHFSPIAEQAQDFLTAISEPVSRPEFVHEYKLTSYSLYA 158
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DII+ L RLSK VP+ I FI TLSYGKVKLVLKHN+YFIES E L
Sbjct: 159 AVSVGLQTEDIIQVLNRLSKVPVPESITSFIRERTLSYGKVKLVLKHNKYFIESSHPETL 218
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
Q LLKD I++ R+ + Q D +KA F
Sbjct: 219 QFLLKDKTIREARV---------ISAQQDTSIKAATF 246
>gi|365765060|gb|EHN06574.1| Ssl2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 759
Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 39 LRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 98
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 99 AVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 158
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 159 QMLLNDSVIGPLRIDSD 175
>gi|213407190|ref|XP_002174366.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces japonicus yFS275]
gi|212002413|gb|EEB08073.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces japonicus yFS275]
Length = 800
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 1/151 (0%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + LK DH +RPLW+ P +G + LE+FSP+ A DFL+ IAEP+ RP IH
Sbjct: 74 FGQSDFSGLLGLKADHAARPLWINPVDGRVILEAFSPLAEQAIDFLVTIAEPISRPAFIH 133
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++TAYSLYAAVSVGL+T DII L RLSKT +P IVEFI CT+SYGKVKLVLK NR
Sbjct: 134 EYRITAYSLYAAVSVGLKTEDIINVLDRLSKTPIPQQIVEFIRACTVSYGKVKLVLKKNR 193
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
YF+ES A VL+ LL+D +I R+ ++
Sbjct: 194 YFVESGDANVLRLLLRDSIIGPLRIESSAQN 224
>gi|260942042|ref|XP_002615187.1| hypothetical protein CLUG_05202 [Clavispora lusitaniae ATCC 42720]
gi|238851610|gb|EEQ41074.1| hypothetical protein CLUG_05202 [Clavispora lusitaniae ATCC 42720]
Length = 846
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 106/142 (74%), Gaps = 1/142 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRP+W++P +G I LESFSP+ A DFLI +AEP RP HIHEY +T+YSLYA
Sbjct: 122 LKPDHFSRPIWISPVDGRIILESFSPLAEQAQDFLITVAEPRSRPSHIHEYAITSYSLYA 181
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSKT VP+ ++ I T+ +GKVKLVLKHNRYF+ES A++L
Sbjct: 182 AVSVGLETDDIIAVLNRLSKTPVPESFLKIIREATIKFGKVKLVLKHNRYFVESSQADIL 241
Query: 178 QKLLKDPVIQDCRLRRDTEDSQ 199
Q LLKDPVI RL +E Q
Sbjct: 242 QMLLKDPVIGPLRLPAHSEQQQ 263
>gi|322785271|gb|EFZ11965.1| hypothetical protein SINV_03753 [Solenopsis invicta]
Length = 586
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 99/111 (89%), Gaps = 2/111 (1%)
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
+YKLTAYSLYAAVSVGL+T DIIEYLKRLSKTS+PDGI+EFI LCTLSYGKVKLVLKHN+
Sbjct: 18 KYKLTAYSLYAAVSVGLQTQDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNK 77
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT--LINQADKKLKAPQFG 215
YFIESPF EVLQ+LLKDPVIQ+CRLR+ TED ++ ++ K+KAPQFG
Sbjct: 78 YFIESPFPEVLQRLLKDPVIQECRLRKLTEDMESDDIVTNVQAKMKAPQFG 128
>gi|303271055|ref|XP_003054889.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462863|gb|EEH60141.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 111/146 (76%), Gaps = 1/146 (0%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
D FG D+ + +VLKPDH +RPLW+ +G IFLESFSPVY+ A+DFLI++AEPVCRP ++
Sbjct: 54 DGFGDHDF-SDLVLKPDHANRPLWICGDGRIFLESFSPVYKAAYDFLISVAEPVCRPANM 112
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEY LT +SLYAAVSVGLET I+ L RLSKT + + I F+ CT +YGKVKLVL+ N
Sbjct: 113 HEYLLTPHSLYAAVSVGLETATILSVLGRLSKTQLSNEIHSFVEACTANYGKVKLVLQRN 172
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCRL 191
R+F+ESP VL+ LL+D I+ R+
Sbjct: 173 RFFLESPDPGVLRTLLRDETIRKARV 198
>gi|403218334|emb|CCK72825.1| hypothetical protein KNAG_0L02070 [Kazachstania naganishii CBS
8797]
Length = 851
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 110/145 (75%), Gaps = 2/145 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F + D+ + + L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 115 FKSHDF-SYLRLRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 173
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++TAYSLYAAVSVGLET DI+ L RLSK V IV+FI T+SYGKVKLV+KHNR
Sbjct: 174 EYRITAYSLYAAVSVGLETDDILSVLDRLSKVPVAKSIVDFIKNATISYGKVKLVIKHNR 233
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRL 191
YF+E+ AE+LQ LL+D +I R+
Sbjct: 234 YFVETTQAEILQMLLRDQIIGPLRI 258
>gi|449016491|dbj|BAM79893.1| DNA repair helicase rad25 [Cyanidioschyzon merolae strain 10D]
Length = 967
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 106/141 (75%)
Query: 52 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT 111
DY + LKPDH RP+WV PNG IFLE+FSP+YR A DFL+A+AEP RPE IHEY LT
Sbjct: 141 DYARALHLKPDHVQRPIWVLPNGRIFLEAFSPLYRQASDFLVAVAEPYSRPEWIHEYLLT 200
Query: 112 AYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIES 171
YSLYAAVSVGLET I L+RLSKT +P +V+ I+ CT +YGK KLVL HNRY+++S
Sbjct: 201 PYSLYAAVSVGLETEAIQTVLERLSKTELPLSVVKLIDKCTRTYGKAKLVLHHNRYYVQS 260
Query: 172 PFAEVLQKLLKDPVIQDCRLR 192
P+ EVL+ LL+D I R++
Sbjct: 261 PYPEVLRFLLQDEQIARARVQ 281
>gi|254586097|ref|XP_002498616.1| ZYRO0G14630p [Zygosaccharomyces rouxii]
gi|238941510|emb|CAR29683.1| ZYRO0G14630p [Zygosaccharomyces rouxii]
Length = 857
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 105/139 (75%), Gaps = 3/139 (2%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRPLW++P +G + LESFSP+ A DFL+ IAEPV RP H+HEYK+TAYSLYA
Sbjct: 130 LKPDHASRPLWISPSDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHMHEYKITAYSLYA 189
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK + I FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 190 AVSVGLETDDIISVLDRLSKVPLATSIRNFIKTATISYGKVKLVIKHNRYFVETTQADIL 249
Query: 178 QKLLKDPVIQDCRLRRDTE 196
Q LLKD +I R+ DTE
Sbjct: 250 QMLLKDSIIGPLRI--DTE 266
>gi|365987532|ref|XP_003670597.1| hypothetical protein NDAI_0F00350 [Naumovozyma dairenensis CBS 421]
gi|343769368|emb|CCD25354.1| hypothetical protein NDAI_0F00350 [Naumovozyma dairenensis CBS 421]
Length = 874
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 104/134 (77%), Gaps = 1/134 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP H+HEYK+TAYSLYA
Sbjct: 138 LRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHMHEYKITAYSLYA 197
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DI+ L RLSK V I++FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 198 AVSVGLETADILSVLDRLSKVPVAQSIIDFIEGATISYGKVKLVIKHNRYFVETTQADIL 257
Query: 178 QKLLKDPVIQDCRL 191
Q LLKD +I R+
Sbjct: 258 QMLLKDSIIGPLRI 271
>gi|328770595|gb|EGF80636.1| hypothetical protein BATDEDRAFT_33160 [Batrachochytrium
dendrobatidis JAM81]
Length = 769
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 105/145 (72%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPD RPLWV NG I LE+FSP+ A DFLI IAEPV RP IHE+KLTAYSLYAA
Sbjct: 5 LKPDAHRRPLWVCHNGRIILEAFSPLVTQAQDFLITIAEPVTRPSRIHEFKLTAYSLYAA 64
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVG+ T I++ L+R SK +VP+ +++FI CTLSYGKVKLVL N+YFIES + E+L+
Sbjct: 65 VSVGMSTDVILDVLERFSKIAVPNRVIQFIKECTLSYGKVKLVLNRNKYFIESSYPEILR 124
Query: 179 KLLKDPVIQDCRLRRDTEDSQTLIN 203
LL PVI R+ R+ +D L N
Sbjct: 125 ILLASPVIASARVIRNDDDQTDLNN 149
>gi|345568577|gb|EGX51470.1| hypothetical protein AOL_s00054g169 [Arthrobotrys oligospora ATCC
24927]
Length = 838
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYK 109
+D + + +KPDH+SRP+W+ P NG I LESFSP+ A DFL AIAEP+ RP ++HEY+
Sbjct: 78 RDELSFLKMKPDHESRPMWINPRNGKIILESFSPLAPAAQDFLTAIAEPLSRPTYLHEYR 137
Query: 110 LTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
+T +SLYAAVSVGL+ DI+ L R SK +PD IV+FIN CT SYGKVKLVLKHNRYF+
Sbjct: 138 ITPHSLYAAVSVGLDPKDIVAVLDRFSKIPIPDEIVQFINGCTGSYGKVKLVLKHNRYFL 197
Query: 170 ESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKA 211
ES ++LQ LL+D VI + R+ D D + ++ K+ A
Sbjct: 198 ESSDMKMLQILLRDQVISEQRVFTDVGDGDGITKESAPKMGA 239
>gi|328865979|gb|EGG14365.1| transcription factor IIH subunit [Dictyostelium fasciculatum]
Length = 810
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 24 DEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
D + + N+ + P+ F KDY + +K + S+P+WV P+G IFLE+FSP
Sbjct: 40 DPNSIGTNGTGNIPQIGVGEPKGAF--KDYSKRCQIKDNIASKPIWVCPDGRIFLETFSP 97
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
+Y+ A DFL+AIAEPVCRP+ IHEY++T +SLYAAVSVG++T II+ L LSK VP
Sbjct: 98 IYKEASDFLVAIAEPVCRPQLIHEYQMTPFSLYAAVSVGIDTTHIIKVLNTLSKMEVPPE 157
Query: 144 IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
I F+ CT SYGKVKLVL+ N+YF+ES EVL+ LL+D VI R+++ D
Sbjct: 158 IESFVRQCTSSYGKVKLVLQRNKYFVESAHPEVLEFLLRDSVIASARIKQTVAD 211
>gi|145344427|ref|XP_001416734.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576960|gb|ABO95027.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 781
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 134/188 (71%), Gaps = 4/188 (2%)
Query: 4 KRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 63
KR+ + S++ + E L++DG P + +E D D FG D+ +++ LKPDH
Sbjct: 2 KRRHEHAPKVSFLSEDAE-LNDDG-PSESDSELE-DALWKGGDGFGENDF-SELELKPDH 57
Query: 64 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
+RPLWV +G IFLESFSPVY+ A+DFLI++AEPVCRP ++HEY LT +SLYAAVSVGL
Sbjct: 58 ANRPLWVCDDGRIFLESFSPVYKAAYDFLISVAEPVCRPANMHEYVLTPHSLYAAVSVGL 117
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
ET I+ L RLSKT + D I +F++ CT +YGKVKLVL+ N++++ES ++L++LL+D
Sbjct: 118 ETSTILSVLDRLSKTRLSDEIHDFVHECTENYGKVKLVLQRNKFYLESNDPKILKELLQD 177
Query: 184 PVIQDCRL 191
VI+ R+
Sbjct: 178 DVIRAARV 185
>gi|390594292|gb|EIN03704.1| DNA helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 866
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 110/157 (70%), Gaps = 10/157 (6%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH +RPLW++P +G I LE+FSP+ A DFL+AI+EPV RP +HEYK+T+YSLYA
Sbjct: 104 LKPDHAARPLWISPEDGSIILEAFSPIAEQAQDFLVAISEPVSRPAFLHEYKITSYSLYA 163
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE L R SK VP+ I FI TLSYGKVKLVLKHN+Y++ES + L
Sbjct: 164 AVSVGLQTEDIIEVLNRYSKVPVPESITTFIRERTLSYGKVKLVLKHNKYYVESSHPDTL 223
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
Q LLKD VI++ R+ + Q D ++ F
Sbjct: 224 QFLLKDKVIREARV---------ISQQTDNSIRGNTF 251
>gi|224058459|ref|XP_002299520.1| predicted protein [Populus trichocarpa]
gi|222846778|gb|EEE84325.1| predicted protein [Populus trichocarpa]
Length = 803
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 111/153 (72%), Gaps = 9/153 (5%)
Query: 33 KKNVEKDDAAVPE---DEF------GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 83
+ +V +DDA PE D+F G K +++ LKPDH +RPLW +G IFLE+FS
Sbjct: 23 RSSVAEDDAFYPEEAGDDFRDGETEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSS 82
Query: 84 VYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDG 143
+Y+ A+DFLIAIAEPVCRPE +HEY LT +SLYAAVSVGLET II L +LSKT +P
Sbjct: 83 LYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKE 142
Query: 144 IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
+++FI+ T +YGKVKLVLK NRYFIESPF E
Sbjct: 143 MIDFIHGSTANYGKVKLVLKKNRYFIESPFTEA 175
>gi|452823742|gb|EME30750.1| DNA excision repair protein ERCC-3 [Galdieria sulphuraria]
Length = 807
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 104/138 (75%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
+Q+ LK DH+ RPLWV P+G IFLE+FSP+Y+ A+DFL+A++EP RPE IHEY +T YS
Sbjct: 77 SQLKLKVDHERRPLWVCPSGKIFLETFSPLYKQAYDFLVAVSEPASRPEFIHEYMITPYS 136
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAVSVGLET II L+RL KT++P IVE I T +YGK KLVL N Y+I+S F+
Sbjct: 137 LYAAVSVGLETETIIRVLERLCKTTLPKEIVELITSSTKTYGKAKLVLHRNIYYIQSRFS 196
Query: 175 EVLQKLLKDPVIQDCRLR 192
VL LLKDP++ +C R
Sbjct: 197 TVLDTLLKDPLLAECCAR 214
>gi|302793029|ref|XP_002978280.1| hypothetical protein SELMODRAFT_418040 [Selaginella moellendorffii]
gi|300154301|gb|EFJ20937.1| hypothetical protein SELMODRAFT_418040 [Selaginella moellendorffii]
Length = 747
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
KD+ A + LK DH RP+ V +G IFLE+FSP+Y+ A+DFLIA+AEPVCRPEH+HEY L
Sbjct: 43 KDFSA-LELKSDHDRRPILVGCDGRIFLETFSPLYKQAYDFLIAVAEPVCRPEHMHEYNL 101
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLYAAVS GLET +I L+RLSK +P +++FI TL+ GK KLVL+ NRYFIE
Sbjct: 102 TPHSLYAAVSFGLETSAVITVLERLSKAKLPSTVLDFIRKATLNCGKAKLVLQKNRYFIE 161
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
SP E+ +K L DPVI R+ T+ S
Sbjct: 162 SPNEEIFKKFLNDPVIARARIFNTTQIS 189
>gi|170099355|ref|XP_001880896.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644421|gb|EDR08671.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 769
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 107/157 (68%), Gaps = 17/157 (10%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRPLW++P +GHI LE+FSP+ A DFL AI+EPV RP IHEYKLT+YSLYA
Sbjct: 10 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIHEYKLTSYSLYA 69
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE VPD I FI TLSYGKVKLVLKHN+YF+ES E L
Sbjct: 70 AVSVGLQTEDIIE-------VPVPDSITSFIRERTLSYGKVKLVLKHNKYFVESSHPETL 122
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
Q LLKD VI++ RL QAD +K+ F
Sbjct: 123 QLLLKDKVIREARL---------FSVQADSSIKSATF 150
>gi|296817193|ref|XP_002848933.1| DNA repair helicase RAD25 [Arthroderma otae CBS 113480]
gi|238839386|gb|EEQ29048.1| DNA repair helicase RAD25 [Arthroderma otae CBS 113480]
Length = 813
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 111/163 (68%), Gaps = 6/163 (3%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ A + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 67 FGYKDFSA-LSLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 125
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SYGK+KLVLKHNR
Sbjct: 126 EYRLTGNSLYAAVSVGLLPTDIINFLDRLSKTPLPEAIKSFIINFTKSYGKIKLVLKHNR 185
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
+F+ES LQ LLKD VI R+ E S+ +I QA K+
Sbjct: 186 FFVESSDPATLQMLLKDEVIGPQRI----ESSEGIIQQAAPKM 224
>gi|307108852|gb|EFN57091.1| hypothetical protein CHLNCDRAFT_57434 [Chlorella variabilis]
Length = 818
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 109/159 (68%), Gaps = 18/159 (11%)
Query: 48 FGAKD--YR--AQMVLKPDH--------------KSRPLWVAPNGHIFLESFSPVYRHAH 89
GA D YR + LKPDH + PLWV P+ +FLE+FSPVY+ A+
Sbjct: 201 LGAADEEYRDFTSLRLKPDHFNRRAGAGLGGGGDRGGPLWVCPDCRVFLETFSPVYKQAY 260
Query: 90 DFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFIN 149
DFLIAIAEPV RPE IHEY+LT +SLYAAVS+GLE I+ L RLSK +P I EFI
Sbjct: 261 DFLIAIAEPVSRPEFIHEYQLTPHSLYAAVSIGLEMGTIVGVLGRLSKNVLPREIREFIQ 320
Query: 150 LCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
CT +YGKVKLVL+HNR+F+ESP EVL+ LL DPVI+D
Sbjct: 321 GCTQNYGKVKLVLQHNRFFVESPHPEVLRALLADPVIRD 359
>gi|115433138|ref|XP_001216706.1| DNA repair helicase RAD25 [Aspergillus terreus NIH2624]
gi|114189558|gb|EAU31258.1| DNA repair helicase RAD25 [Aspergillus terreus NIH2624]
Length = 839
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 122/181 (67%), Gaps = 12/181 (6%)
Query: 37 EKDDAAVPED-EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIA 94
+KD A +D FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL
Sbjct: 74 KKDSAVQKQDPNFGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTT 132
Query: 95 IAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLS 154
IAEP+ RP H+HEY+LT SLYAAVSVGL+ DII +L RLSKT +PD I FI T S
Sbjct: 133 IAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPQDIINFLDRLSKTPLPDTIKSFIIDFTKS 192
Query: 155 YGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
YGK+K+VLKHNR+F+ES ++LQ LL+D VI R+ + S+ +I QA AP+
Sbjct: 193 YGKIKVVLKHNRFFVESTDPQMLQMLLQDEVIGPQRV----QGSEGIIQQA-----APKM 243
Query: 215 G 215
G
Sbjct: 244 G 244
>gi|358371648|dbj|GAA88255.1| TFIIH complex helicase Ssl2 [Aspergillus kawachii IFO 4308]
Length = 814
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 130/206 (63%), Gaps = 13/206 (6%)
Query: 13 ESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDE--FGAKDYRAQMVLKPDHKSRPLWV 70
+ Y D E D++ V K ++E AAV + FG KD+ + + LKPDH +RPLW+
Sbjct: 30 DEYSDYEEEVKDDNLKGVLEKFSLESKSAAVQRQDPDFGYKDF-SSLSLKPDHANRPLWI 88
Query: 71 AP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
P G I LESFSP+ A DFL IAEP+ RP H+HEY+LT SLYAAVSVGL DII
Sbjct: 89 DPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLLPQDII 148
Query: 130 EYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
+L RLSKT +PD I FI T SYGK+K+VLKHNR+F+ES +LQ LL+D VI
Sbjct: 149 NFLDRLSKTPLPDTIKSFILDFTKSYGKIKVVLKHNRFFVESTDPAMLQMLLQDEVIGSQ 208
Query: 190 RLRRDTEDSQTLINQADKKLKAPQFG 215
RL+ ++ +I QA AP+ G
Sbjct: 209 RLK----GTEGIIQQA-----APKMG 225
>gi|358058547|dbj|GAA95510.1| hypothetical protein E5Q_02165 [Mixia osmundae IAM 14324]
Length = 966
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/135 (63%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 59 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH RPL+V+P+ G I LE+F + A DFL+AIAEPV RP HIHEYKLT YSLYA
Sbjct: 210 LKPDHAFRPLYVSPSSGAIILEAFHALASQAQDFLVAIAEPVSRPAHIHEYKLTPYSLYA 269
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DIIE L RLSK VP+ I++FI CT+SYGKVKLVLK N+Y++ES + L
Sbjct: 270 AVSVGLETEDIIEVLARLSKVPVPNEIIKFIRDCTVSYGKVKLVLKRNKYYVESGHPDTL 329
Query: 178 QKLLKDPVIQDCRLR 192
+ LL+D VI R+R
Sbjct: 330 RMLLRDDVIGKTRIR 344
>gi|315049307|ref|XP_003174028.1| DNA repair helicase RAD25 [Arthroderma gypseum CBS 118893]
gi|311341995|gb|EFR01198.1| DNA repair helicase RAD25 [Arthroderma gypseum CBS 118893]
Length = 803
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 116/180 (64%), Gaps = 12/180 (6%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K AA + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 47 QKSQAAKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 105
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SY
Sbjct: 106 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPTDIINFLDRLSKTPLPESIKSFIINFTKSY 165
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
GK+KLVLKHNR+F+ES LQ LLKD VI R+ +S + QA AP+ G
Sbjct: 166 GKIKLVLKHNRFFVESSDTATLQMLLKDEVIGPQRI-----ESSEITQQA-----APKMG 215
>gi|342321393|gb|EGU13327.1| tRNA Guanine-N1-methyltransferase [Rhodotorula glutinis ATCC
204091]
Length = 1800
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 121/172 (70%), Gaps = 10/172 (5%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYK 109
+DY + L+PD SRP ++ P+ GHI LE+F P+ ++A DFL+AIAEPV RP++IHEYK
Sbjct: 215 RDY-GYLPLRPDQASRPFYIVPSTGHIILENFHPLAKYATDFLVAIAEPVSRPKYIHEYK 273
Query: 110 LTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
LT +SLYAAVSVGLET +IIE L R+SK VPD + EFI CT SYGKVK+VLK NR+++
Sbjct: 274 LTPHSLYAAVSVGLETENIIEVLNRMSKVPVPDELCEFIRECTHSYGKVKMVLKKNRHYV 333
Query: 170 ESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAP--QFGLYSA 219
ES E L+ LL+D VI R+ E+ Q QADK AP FGL +A
Sbjct: 334 ESSDPETLRILLRDEVIAKARV--PPEEQQ----QADKDGAAPTATFGLETA 379
>gi|296413360|ref|XP_002836382.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630199|emb|CAZ80573.1| unnamed protein product [Tuber melanosporum]
Length = 826
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 116/169 (68%), Gaps = 9/169 (5%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F +D+ + + +K DH+SRPLW+ P +G I LESFSP+ A DFL IAEP+ RP ++H
Sbjct: 85 FSKQDF-SYLKMKLDHESRPLWINPESGVIVLESFSPLAGQAQDFLTTIAEPLSRPTYLH 143
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYKLT +SLYAAVSVGL+ +DII + RLSK VP I++FI CT SYGKVKLVLK NR
Sbjct: 144 EYKLTPHSLYAAVSVGLDPNDIISVMDRLSKIPVPPKIIDFIKKCTSSYGKVKLVLKENR 203
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
YF+ES +LQ+LL+DPVI R++ + T K KAPQ G
Sbjct: 204 YFVESSDPAMLQRLLQDPVIGPLRVQSEGGSGIT-------KEKAPQMG 245
>gi|452841426|gb|EME43363.1| hypothetical protein DOTSEDRAFT_72690 [Dothistroma septosporum
NZE10]
Length = 847
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH RPLW+ P NG + LE+F+P+++ A DFLI IAEP R ++HEY + A+SL+A
Sbjct: 91 LKPDHHMRPLWIDPANGRVVLETFAPLFKRAQDFLINIAEPQSRTTNMHEYTINAHSLFA 150
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL DII+ L SKT+VP+ I++F+N T S+GKV+LVLKHNRY++ES A VL
Sbjct: 151 AVSVGLTQQDIIQELDTFSKTTVPENIIQFVNDVTQSFGKVRLVLKHNRYYVESSDASVL 210
Query: 178 QKLLKDPVIQDCRLRRDTE 196
Q LL+DP I +CR+ E
Sbjct: 211 QMLLRDPQIAECRVEESDE 229
>gi|384252657|gb|EIE26133.1| DNA repair helicase rad25 [Coccomyxa subellipsoidea C-169]
Length = 815
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 96/121 (79%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PLWV P+G IFLE+FSPVYR A+DFLIAIAEPVCRPE +HEY LT +SLYAAVS+GL T
Sbjct: 81 PLWVCPDGRIFLETFSPVYRQAYDFLIAIAEPVCRPECVHEYVLTPHSLYAAVSIGLNTQ 140
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
II L RLSK +P I +FI T +YGKVKLVL N++++ESPF ++L+KLLKD VI
Sbjct: 141 TIITVLNRLSKVQLPSEISKFIQESTGNYGKVKLVLHRNKFWVESPFPDILRKLLKDEVI 200
Query: 187 Q 187
Q
Sbjct: 201 Q 201
>gi|156050235|ref|XP_001591079.1| hypothetical protein SS1G_07704 [Sclerotinia sclerotiorum 1980]
gi|154692105|gb|EDN91843.1| hypothetical protein SS1G_07704 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 847
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH +RPLW+ P I LESFSP+ HA DFL IAEP RP +H
Sbjct: 96 FGNNDF-SYLSLKPDHANRPLWIDPQKARIILESFSPLASHAQDFLTTIAEPKSRPSFLH 154
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL+ DII L RLSK +PD + FI CT SYGKVKLVLK+ +
Sbjct: 155 EYALTPHSLYAAVSVGLDPKDIINVLDRLSKMPIPDNVRAFIVNCTQSYGKVKLVLKNTK 214
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTL 201
+F+ES E+LQ+LLKDPVI R++ TE + T+
Sbjct: 215 HFVESSDPELLQRLLKDPVIGPLRVQGTTEITTTI 249
>gi|119183122|ref|XP_001242631.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392865533|gb|EJB10993.1| DNA repair helicase rad25 [Coccidioides immitis RS]
Length = 832
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 137
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I +FI T SYGK+K+VLKHNR
Sbjct: 138 EYRLTGNSLYAAVSVGLLPADIINFLDRLSKTPLPETIKQFIVNFTKSYGKIKVVLKHNR 197
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES +LQ LL+D VI R+ E+S+ +I QA AP+ G
Sbjct: 198 FFVESSDPAMLQTLLQDEVIGAQRV----ENSEGIIQQA-----APKMG 237
>gi|303319627|ref|XP_003069813.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109499|gb|EER27668.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 832
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 137
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I +FI T SYGK+K+VLKHNR
Sbjct: 138 EYRLTGNSLYAAVSVGLLPADIINFLDRLSKTPLPETIKQFIVNFTKSYGKIKVVLKHNR 197
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES +LQ LL+D VI R+ E+S+ +I QA AP+ G
Sbjct: 198 FFVESSDPAMLQTLLQDEVIGAQRV----ENSEGIIQQA-----APKMG 237
>gi|169859418|ref|XP_001836349.1| DNA helicase [Coprinopsis cinerea okayama7#130]
gi|116502638|gb|EAU85533.1| DNA helicase [Coprinopsis cinerea okayama7#130]
Length = 848
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 103/141 (73%), Gaps = 8/141 (5%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRPLW++P +GHI LE+FSP+ A DFL AI+EPV RP IHEYKLT+YSLYA
Sbjct: 101 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIHEYKLTSYSLYA 160
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL+T DIIE VP+ IV FI TLSYGKVKLVLKHN+YF+ES E L
Sbjct: 161 AVSVGLQTEDIIE-------VPVPETIVNFIRERTLSYGKVKLVLKHNKYFVESSHPETL 213
Query: 178 QKLLKDPVIQDCRLRRDTEDS 198
Q LLKD +I++ R + DS
Sbjct: 214 QFLLKDKIIREARSQAPVVDS 234
>gi|308802017|ref|XP_003078322.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri]
gi|116056774|emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri]
Length = 812
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/133 (60%), Positives = 107/133 (80%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPDH +RPLWV +G IFLESFSPVY+ A+DFLI++AEPVCRP ++HEY LT +SLYAA
Sbjct: 64 LKPDHANRPLWVCDDGRIFLESFSPVYKAAYDFLISVAEPVCRPANMHEYVLTPHSLYAA 123
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGLET I+ L RLSKT + + I +F++ CT +YGKVKLVL+ N++++ES ++LQ
Sbjct: 124 VSVGLETSTILSVLDRLSKTHLSEEIHDFVHQCTENYGKVKLVLQRNKFYLESNDPKILQ 183
Query: 179 KLLKDPVIQDCRL 191
+LL+D VI+ R+
Sbjct: 184 ELLQDDVIRAARV 196
>gi|145242602|ref|XP_001393874.1| DNA repair helicase ercc3 [Aspergillus niger CBS 513.88]
gi|134078426|emb|CAL00841.1| unnamed protein product [Aspergillus niger]
Length = 818
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 119/181 (65%), Gaps = 13/181 (7%)
Query: 38 KDDAAVPEDE--FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIA 94
K AAV + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL
Sbjct: 59 KKSAAVQRQDPDFGYKDF-SSLSLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTT 117
Query: 95 IAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLS 154
IAEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +PD I FI T S
Sbjct: 118 IAEPLSRPTHLHEYRLTGNSLYAAVSVGLLPQDIINFLDRLSKTPLPDTIKSFILDFTKS 177
Query: 155 YGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
YGK+K+VLKHNR+F+ES +LQ LL+D VI RL+ ++ +I QA AP+
Sbjct: 178 YGKIKVVLKHNRFFVESTDPAMLQMLLQDEVIGSQRLK----GTEGIIQQA-----APKM 228
Query: 215 G 215
G
Sbjct: 229 G 229
>gi|350640166|gb|EHA28519.1| TFIIH basal transcription factor complex, subunit SSL2/RAD25
[Aspergillus niger ATCC 1015]
Length = 825
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 119/181 (65%), Gaps = 13/181 (7%)
Query: 38 KDDAAVPEDE--FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIA 94
K AAV + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL
Sbjct: 66 KKSAAVQRQDPDFGYKDF-SSLSLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTT 124
Query: 95 IAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLS 154
IAEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +PD I FI T S
Sbjct: 125 IAEPLSRPTHLHEYRLTGNSLYAAVSVGLLPQDIINFLDRLSKTPLPDTIKSFILDFTKS 184
Query: 155 YGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
YGK+K+VLKHNR+F+ES +LQ LL+D VI RL+ ++ +I QA AP+
Sbjct: 185 YGKIKVVLKHNRFFVESTDPAMLQMLLQDEVIGSQRLK----GTEGIIQQA-----APKM 235
Query: 215 G 215
G
Sbjct: 236 G 236
>gi|409078300|gb|EKM78663.1| hypothetical protein AGABI1DRAFT_121098 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 848
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 111/168 (66%), Gaps = 18/168 (10%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F +D+ + + LK DH SRP+W++P+ GHI LE+FSP+ A DFL AI+EPV RP IH
Sbjct: 94 FNEQDF-SWLHLKADHTSRPIWISPDDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIH 152
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYKLT+YSLYAAVSVGL+T DIIE VPD I FI TLSYGKVKLVLKHN+
Sbjct: 153 EYKLTSYSLYAAVSVGLQTEDIIE-------VPVPDSITSFIRDQTLSYGKVKLVLKHNK 205
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
Y++ES E LQ LLKD VI++ RL Q D +KA F
Sbjct: 206 YYVESSHPETLQLLLKDRVIREARL---------FSIQQDNSIKATTF 244
>gi|326468955|gb|EGD92964.1| hypothetical protein TESG_00524 [Trichophyton tonsurans CBS 112818]
gi|326480066|gb|EGE04076.1| DEAD/DEAH box helicase [Trichophyton equinum CBS 127.97]
Length = 809
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 18/210 (8%)
Query: 8 KEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPED-EFGAKDYRAQMVLKPDHKSR 66
+ V + YV+ G +++ + ++K+ A+ +D FG KD+ + + LKPDH +R
Sbjct: 28 QSVSSDEYVEPEGNVVEKFTLQSYSQKS-----QAIKQDPHFGYKDF-SSLALKPDHANR 81
Query: 67 PLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
PLW+ P G I LESFSP+ A DFL IAEP+ RP H+HEY+LT SLYAAVSVGL
Sbjct: 82 PLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLLP 141
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPV 185
DII +L RLSKT +P+ + FI T SYGK+KLVLKHNR+F+ES LQ LLKD V
Sbjct: 142 TDIINFLDRLSKTPLPESLKSFIINFTKSYGKIKLVLKHNRFFVESSDTATLQMLLKDEV 201
Query: 186 IQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
I R+ +S + QA AP+ G
Sbjct: 202 IGPQRI-----ESSEITQQA-----APKMG 221
>gi|226287233|gb|EEH42746.1| DNA repair helicase RAD25 [Paracoccidioides brasiliensis Pb18]
Length = 833
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 80 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 138
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SYGK+K+VLKHNR
Sbjct: 139 EYRLTGNSLYAAVSVGLLPRDIINFLDRLSKTPLPETIKSFIINFTKSYGKIKVVLKHNR 198
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES LQ LL+D VI RL ++S+ +I QA AP+ G
Sbjct: 199 FFVESSDPATLQMLLQDEVIGPQRL----QNSEGIIQQA-----APKMG 238
>gi|295667028|ref|XP_002794064.1| DNA repair helicase RAD25 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277717|gb|EEH33283.1| DNA repair helicase RAD25 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 832
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 137
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SYGK+K+VLKHNR
Sbjct: 138 EYRLTGNSLYAAVSVGLLPRDIINFLDRLSKTPLPETIKSFIINFTKSYGKIKVVLKHNR 197
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES LQ LL+D VI RL ++S+ +I QA AP+ G
Sbjct: 198 FFVESSDPATLQMLLQDEVIGPQRL----QNSEGIIQQA-----APKMG 237
>gi|302506306|ref|XP_003015110.1| hypothetical protein ARB_06870 [Arthroderma benhamiae CBS 112371]
gi|291178681|gb|EFE34470.1| hypothetical protein ARB_06870 [Arthroderma benhamiae CBS 112371]
Length = 830
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 115/180 (63%), Gaps = 12/180 (6%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K A + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 74 QKSQAVKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 132
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ + FI T SY
Sbjct: 133 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPTDIINFLDRLSKTPLPETLKSFIINFTKSY 192
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
GK+KLVLKHNR+F+ES LQ LLKD VI R+ +S + QA AP+ G
Sbjct: 193 GKIKLVLKHNRFFVESSDTATLQMLLKDEVIGPQRI-----ESSEITQQA-----APKMG 242
>gi|302656492|ref|XP_003019999.1| hypothetical protein TRV_05968 [Trichophyton verrucosum HKI 0517]
gi|291183777|gb|EFE39375.1| hypothetical protein TRV_05968 [Trichophyton verrucosum HKI 0517]
Length = 819
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 115/180 (63%), Gaps = 12/180 (6%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K A + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 63 QKSQAVKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 121
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ + FI T SY
Sbjct: 122 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPTDIINFLDRLSKTPLPETLKSFIINFTKSY 181
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
GK+KLVLKHNR+F+ES LQ LLKD VI R+ +S + QA AP+ G
Sbjct: 182 GKIKLVLKHNRFFVESSDTATLQMLLKDEVIGPQRI-----ESSEITQQA-----APKMG 231
>gi|225683607|gb|EEH21891.1| TFIIH basal transcription factor complex helicase XPB subunit
[Paracoccidioides brasiliensis Pb03]
Length = 787
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 34 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 92
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SYGK+K+VLKHNR
Sbjct: 93 EYRLTGNSLYAAVSVGLLPRDIINFLDRLSKTPLPETIKSFIINFTKSYGKIKVVLKHNR 152
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES LQ LL+D VI RL ++S+ +I QA AP+ G
Sbjct: 153 FFVESSDPATLQMLLQDEVIGPQRL----QNSEGIIQQA-----APKMG 192
>gi|238503147|ref|XP_002382807.1| TFIIH complex helicase Ssl2, putative [Aspergillus flavus NRRL3357]
gi|220691617|gb|EED47965.1| TFIIH complex helicase Ssl2, putative [Aspergillus flavus NRRL3357]
gi|391870679|gb|EIT79856.1| RNA polymerase II transcription initiation [Aspergillus oryzae
3.042]
Length = 824
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 10/169 (5%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 130
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL+ DII +L RLSKT +PD I FI T SYGK+K+VLKHNR
Sbjct: 131 EYRLTGNSLYAAVSVGLQPQDIINFLDRLSKTPLPDTIKSFIIDFTKSYGKIKVVLKHNR 190
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES +LQ LL+D VI R++ S +I QA AP+ G
Sbjct: 191 FFVESTDPSMLQMLLQDEVIGAQRVQ---GGSAGIIQQA-----APKMG 231
>gi|169776451|ref|XP_001822692.1| DNA repair helicase ercc3 [Aspergillus oryzae RIB40]
gi|83771427|dbj|BAE61559.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 824
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 10/169 (5%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 130
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL+ DII +L RLSKT +PD I FI T SYGK+K+VLKHNR
Sbjct: 131 EYRLTGNSLYAAVSVGLQPQDIINFLDRLSKTPLPDTIKSFIIDFTKSYGKIKVVLKHNR 190
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES +LQ LL+D VI R++ S +I QA AP+ G
Sbjct: 191 FFVESTDPSMLQMLLQDEVIGAQRVQ---GGSAGIIQQA-----APKMG 231
>gi|327301565|ref|XP_003235475.1| TFIIH complex helicase Ssl2 [Trichophyton rubrum CBS 118892]
gi|326462827|gb|EGD88280.1| TFIIH complex helicase Ssl2 [Trichophyton rubrum CBS 118892]
Length = 819
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 115/180 (63%), Gaps = 12/180 (6%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K A + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 63 QKSQAVKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 121
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ + FI T SY
Sbjct: 122 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPTDIINFLDRLSKTPLPETLKSFIINFTKSY 181
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
GK+KLVLKHNR+F+ES LQ LLKD VI R+ +S + QA AP+ G
Sbjct: 182 GKIKLVLKHNRFFVESSDTATLQMLLKDEVIGPQRI-----ESSEITQQA-----APKMG 231
>gi|255071253|ref|XP_002507708.1| predicted protein [Micromonas sp. RCC299]
gi|226522983|gb|ACO68966.1| predicted protein [Micromonas sp. RCC299]
Length = 809
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 108/146 (73%), Gaps = 1/146 (0%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
++FG + ++ LK DH +RPLW+ +G IFLESFS VY+ A+DFLI++AEPVCRP ++
Sbjct: 89 EQFGL-ELCSKASLKEDHANRPLWICSDGRIFLESFSGVYKPAYDFLISVAEPVCRPANV 147
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEY LT SLYAAVS+GLET II L RLSKT +P I FI CT +YGKVKLVL+HN
Sbjct: 148 HEYVLTPQSLYAAVSIGLETATIISVLNRLSKTRLPADIYCFIKACTTNYGKVKLVLQHN 207
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCRL 191
R+F+ES +L++LL D +++ R+
Sbjct: 208 RFFLESDEPRILRELLSDDIVRQSRV 233
>gi|393228723|gb|EJD36361.1| TFIIH basal transcription factor complex helicase XPB subunit
[Auricularia delicata TFB-10046 SS5]
Length = 684
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 100/142 (70%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LK H SRPLWV N I E FSP DFLIAIAEPV RPE IHEY+LT SLYAA
Sbjct: 35 LKAGHDSRPLWVCENHSIVFERFSPFAEQVQDFLIAIAEPVSRPEFIHEYQLTTSSLYAA 94
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
SVGL+T +II+ L R SKT +P +EFI CT+SYGKV+LVLK+++YFIES AE++Q
Sbjct: 95 ASVGLKTAEIIDVLSRFSKTPLPPSTIEFIRDCTVSYGKVQLVLKNSKYFIESKHAEIIQ 154
Query: 179 KLLKDPVIQDCRLRRDTEDSQT 200
+LLKDPV+ R D D+ +
Sbjct: 155 RLLKDPVVGTARATADGADAGS 176
>gi|425772494|gb|EKV10895.1| hypothetical protein PDIG_53830 [Penicillium digitatum PHI26]
gi|425774926|gb|EKV13217.1| hypothetical protein PDIP_49050 [Penicillium digitatum Pd1]
Length = 822
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 126/186 (67%), Gaps = 17/186 (9%)
Query: 32 AKKN-VEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAH 89
+KKN VEK D FG KD + + LK DH +RPLW+ P G I LESFSP+ A
Sbjct: 59 SKKNQVEKTDP-----RFGYKDL-SSLPLKRDHYNRPLWIEPLKGTITLESFSPLAPQAQ 112
Query: 90 DFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFIN 149
DFL IAEP+ RP H+HEY+LT +SLYAAVSVGL+ DI+E+L RLSKT +P+ I FI
Sbjct: 113 DFLTTIAEPLSRPTHLHEYRLTGHSLYAAVSVGLKPQDIVEFLDRLSKTPLPESIRTFII 172
Query: 150 LCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
T SYGK+K+VL+HNRY++E+ E+LQ+LLKD VI R+ ++++ +I +A
Sbjct: 173 EFTKSYGKIKMVLRHNRYYVETTDPEMLQRLLKDEVIGPQRM----DNTEGIIERA---- 224
Query: 210 KAPQFG 215
AP+ G
Sbjct: 225 -APKMG 229
>gi|70985010|ref|XP_748011.1| TFIIH complex helicase Ssl2 [Aspergillus fumigatus Af293]
gi|66845639|gb|EAL85973.1| TFIIH complex helicase Ssl2, putative [Aspergillus fumigatus Af293]
gi|159126065|gb|EDP51181.1| TFIIH complex helicase Ssl2, putative [Aspergillus fumigatus A1163]
Length = 830
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 114/169 (67%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 80 FGYKDF-SSLALKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 138
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL+ DII +L RLSKT +PD + FI T S+GK+K+VLKHNR
Sbjct: 139 EYRLTGNSLYAAVSVGLQPTDIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNR 198
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES +LQ LL+D VI R+ S+ +I QA AP+ G
Sbjct: 199 FFVESTDPAMLQMLLQDEVIGQQRV----NGSEGIIQQA-----APKMG 238
>gi|171686848|ref|XP_001908365.1| hypothetical protein [Podospora anserina S mat+]
gi|170943385|emb|CAP69038.1| unnamed protein product [Podospora anserina S mat+]
Length = 859
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 107
F +DY + LKPDH++RPLW+ P+G I LE FSP+ A DFLI IAEP RP +HE
Sbjct: 99 FKKRDY-SHYQLKPDHQNRPLWIEPDGTIVLERFSPLSEQATDFLITIAEPKSRPSLLHE 157
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y++T +SLYAAVS+GL DII L R KT +P I+ FI+ CT SYGKVKLVLK+N+Y
Sbjct: 158 YRITTHSLYAAVSIGLRPQDIINTLDRFLKTPLPPRILNFISSCTQSYGKVKLVLKNNKY 217
Query: 168 FIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
F+ES ++LQKLL DP I+ R+ T+ S +
Sbjct: 218 FVESVDTQLLQKLLADPQIRAARISGTTDISTS 250
>gi|119498889|ref|XP_001266202.1| TFIIH complex helicase Ssl2, putative [Neosartorya fischeri NRRL
181]
gi|119414366|gb|EAW24305.1| TFIIH complex helicase Ssl2, putative [Neosartorya fischeri NRRL
181]
Length = 829
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 114/169 (67%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLALKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 137
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL+ DII +L RLSKT +PD + FI T S+GK+K+VLKHNR
Sbjct: 138 EYRLTGNSLYAAVSVGLQPTDIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNR 197
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES +LQ LL+D VI R+ S+ +I QA AP+ G
Sbjct: 198 FFVESTDPAMLQMLLQDEVIGQQRV----NGSEGIIQQA-----APKMG 237
>gi|310791605|gb|EFQ27132.1| DNA repair helicase rad25 [Glomerella graminicola M1.001]
Length = 821
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 102/145 (70%), Gaps = 1/145 (0%)
Query: 57 MVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
+ LKPD+++RPLW+ P G IFLESF+P+ A DFLI IAEP+ RP +HEY LT +SL
Sbjct: 89 LALKPDYQNRPLWIDPAKGRIFLESFNPLAEQAQDFLITIAEPISRPSFVHEYALTTHSL 148
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL HDII L R K +PD I +FI CT S+GKVKLVLK+ +YF+ES
Sbjct: 149 YAAVSVGLSPHDIINTLDRFLKMPLPDSIRKFIEGCTQSFGKVKLVLKNTKYFVESTDPV 208
Query: 176 VLQKLLKDPVIQDCRLRRDTEDSQT 200
+LQKLLKDP+I R+ E + T
Sbjct: 209 ILQKLLKDPIIGPLRVHGTEEITTT 233
>gi|400602650|gb|EJP70252.1| DNA repair helicase rad25 [Beauveria bassiana ARSEF 2860]
Length = 816
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 106/154 (68%), Gaps = 2/154 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG DY + +VLK DH++RPLW+ P G I LESFSP+ A DFLI IAEP+ RP +H
Sbjct: 81 FGDNDY-SYLVLKKDHRNRPLWIDPKKGRIILESFSPLAEQAQDFLITIAEPLSRPTFMH 139
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L+R KT +PD I FI CT +YGKVKLVLK +
Sbjct: 140 EYALTMHSLYAAVSVGLSPKDIINTLERFLKTPLPDEIRAFITSCTQTYGKVKLVLKDTK 199
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
YF+ESP E+LQ LLK+P I R++ E + T
Sbjct: 200 YFVESPDPEMLQMLLKNPKIGPLRVQGTAEITTT 233
>gi|392576784|gb|EIW69914.1| hypothetical protein TREMEDRAFT_68365 [Tremella mesenterica DSM
1558]
Length = 867
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 46 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 105
+ G D+ Q LK DH +RPLWV G+I LE+F+P+ + A DFLIAI+EPV RP I
Sbjct: 85 NTLGGADFSNQ-DLKKDHAARPLWVDEYGNIILEAFAPLAQAAQDFLIAISEPVSRPVLI 143
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
HEYK+T SL+AA+SVGLET DIIE L RLSK S+P + I T SYGK++LVLKHN
Sbjct: 144 HEYKITKPSLHAAMSVGLETKDIIEVLDRLSKISLPQKLRVRITEWTSSYGKIRLVLKHN 203
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLIN 203
RYF+ES E L+ LL DPVI CR+ R+ E Q +
Sbjct: 204 RYFLESSVPEFLKVLLNDPVIGPCRVAREDEQGQQVFG 241
>gi|255955729|ref|XP_002568617.1| Pc21g16090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590328|emb|CAP96506.1| Pc21g16090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 822
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 125/186 (67%), Gaps = 17/186 (9%)
Query: 32 AKKN-VEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAH 89
+KKN VEK D FG KD + + LK DH +RPLW+ P G I LESFSP+ A
Sbjct: 59 SKKNQVEKTDP-----RFGYKDL-SSLPLKRDHYNRPLWIEPLKGTITLESFSPLAPQAQ 112
Query: 90 DFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFIN 149
DFL IAEP+ RP H+HEY+LT +SLYAAVSVGL+ DI+E+L RLSKT +P+ I FI
Sbjct: 113 DFLTTIAEPLSRPTHLHEYRLTGHSLYAAVSVGLKPQDIVEFLDRLSKTPLPESIRTFII 172
Query: 150 LCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
T SYGK+K+VL+HNRY++E+ E+LQ+LLKD VI R+ + ++ +I +A
Sbjct: 173 EFTKSYGKIKMVLRHNRYYVETTDPEMLQRLLKDEVIGPQRM----DSTEGIIERA---- 224
Query: 210 KAPQFG 215
AP+ G
Sbjct: 225 -APKMG 229
>gi|261202560|ref|XP_002628494.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis SLH14081]
gi|239590591|gb|EEQ73172.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis SLH14081]
gi|239612316|gb|EEQ89303.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis ER-3]
gi|327358169|gb|EGE87026.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis ATCC 18188]
Length = 833
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 69 KKADVQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 127
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SY
Sbjct: 128 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPGDIINFLDRLSKTPLPEAIKSFIINFTKSY 187
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
GK+K+VLK+NR+F+ES LQ LL+D VI RL ++S+ +I QA K+
Sbjct: 188 GKIKVVLKYNRFFVESSDPATLQMLLQDEVIGPQRL----QNSEGIIQQAAPKM 237
>gi|259480979|tpe|CBF74098.1| TPA: component of the holoenzyme form of RNA polymerase
transcription factor (Eurofung) [Aspergillus nidulans
FGSC A4]
Length = 818
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 114/169 (67%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 70 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 128
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RL+KT +P+ I FI T SYGK+K+VLKHNR
Sbjct: 129 EYRLTGNSLYAAVSVGLLPQDIINFLDRLTKTPLPESIKSFIVEFTKSYGKIKVVLKHNR 188
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES E+LQ LL+D VI R+ + S+ + QA AP+ G
Sbjct: 189 FFVESTDPEMLQMLLQDEVIGSQRV----QASEGITQQA-----APKMG 228
>gi|302765739|ref|XP_002966290.1| hypothetical protein SELMODRAFT_230853 [Selaginella moellendorffii]
gi|300165710|gb|EFJ32317.1| hypothetical protein SELMODRAFT_230853 [Selaginella moellendorffii]
Length = 711
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 98/128 (76%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LK DH RP+ V +G IFLE+FSP+Y+ A+DFLIA+AEPVCRPEH+HEY LT +SLYAA
Sbjct: 19 LKSDHDRRPILVGCDGRIFLETFSPLYKQAYDFLIAVAEPVCRPEHMHEYSLTPHSLYAA 78
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VS GLET +I L+RLSK +P +++FI TL+ GK KLVL+ NRYFIESP E+ +
Sbjct: 79 VSFGLETSAVITVLERLSKAKLPSTVLDFIRKATLNCGKAKLVLQKNRYFIESPNDEIFK 138
Query: 179 KLLKDPVI 186
K L DP++
Sbjct: 139 KFLNDPIL 146
>gi|67902428|ref|XP_681470.1| hypothetical protein AN8201.2 [Aspergillus nidulans FGSC A4]
gi|40739655|gb|EAA58845.1| hypothetical protein AN8201.2 [Aspergillus nidulans FGSC A4]
Length = 833
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 114/169 (67%), Gaps = 11/169 (6%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 85 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 143
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RL+KT +P+ I FI T SYGK+K+VLKHNR
Sbjct: 144 EYRLTGNSLYAAVSVGLLPQDIINFLDRLTKTPLPESIKSFIVEFTKSYGKIKVVLKHNR 203
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
+F+ES E+LQ LL+D VI R+ + S+ + QA AP+ G
Sbjct: 204 FFVESTDPEMLQMLLQDEVIGSQRV----QASEGITQQA-----APKMG 243
>gi|440638918|gb|ELR08837.1| DNA excision repair protein ERCC-3 [Geomyces destructans 20631-21]
Length = 869
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 5/158 (3%)
Query: 36 VEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIA 94
E+D A+ FG+ D+ + + LKPDH +RPLW+ P+ I LESFSP+ A DFL
Sbjct: 110 AERDSAS---HHFGSNDF-SYLSLKPDHDNRPLWIDPHKARIILESFSPLAAQAQDFLTT 165
Query: 95 IAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLS 154
IAEP+ RPE++HEY LT +SLYAAVSVGL+ +DII L RLSK +PD I E+I CT S
Sbjct: 166 IAEPLSRPEYLHEYALTPHSLYAAVSVGLDPNDIISTLDRLSKIPIPDNIREYITSCTQS 225
Query: 155 YGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
+GKVKLVLK+ + F+ES E+LQ+LLKD VI R++
Sbjct: 226 FGKVKLVLKNTKRFVESSDPEMLQRLLKDGVIGPLRVQ 263
>gi|302928024|ref|XP_003054618.1| hypothetical protein NECHADRAFT_90467 [Nectria haematococca mpVI
77-13-4]
gi|256735559|gb|EEU48905.1| hypothetical protein NECHADRAFT_90467 [Nectria haematococca mpVI
77-13-4]
Length = 807
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 107/154 (69%), Gaps = 2/154 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + + LKPDHK+RP+W+ P G I +E FSP+ R A DFLI IAEP RP +H
Sbjct: 94 FGERDF-SYLTLKPDHKNRPMWIDPEKGVIIMEKFSPMARPATDFLITIAEPRSRPAFLH 152
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY +T +SLYAAVSVGL DII L R KT +P I +F+ CT SYGKVKLVLK+NR
Sbjct: 153 EYIMTPHSLYAAVSVGLSPEDIIGTLDRFLKTQLPPSIKQFVLSCTTSYGKVKLVLKNNR 212
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
YF+ES E+LQ LLKD VI+ RLR + + T
Sbjct: 213 YFVESMDREILQMLLKDKVIRKFRLRGSGKITTT 246
>gi|121718807|ref|XP_001276200.1| TFIIH complex helicase Ssl2, putative [Aspergillus clavatus NRRL 1]
gi|119404398|gb|EAW14774.1| TFIIH complex helicase Ssl2, putative [Aspergillus clavatus NRRL 1]
Length = 823
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 120/181 (66%), Gaps = 12/181 (6%)
Query: 37 EKDDAAVPED-EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIA 94
+K+ A +D FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL
Sbjct: 61 KKNPAITRQDPNFGYKDF-SSLDLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTT 119
Query: 95 IAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLS 154
IAEP+ RP H+HEY+LT SLYAAVSVGL+ DII +L RLSKT +P+ I FI T S
Sbjct: 120 IAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPADIINFLDRLSKTPLPETIKSFIVDFTKS 179
Query: 155 YGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQF 214
YGK+K+VLKHNR+F+ES +LQ LL+D VI R+ +S+ + QA AP+
Sbjct: 180 YGKIKVVLKHNRFFVESTDPAMLQMLLQDEVIGQQRV----NESEGITQQA-----APKM 230
Query: 215 G 215
G
Sbjct: 231 G 231
>gi|320586174|gb|EFW98853.1| tfiih complex helicase [Grosmannia clavigera kw1407]
Length = 850
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + + LKPDH +RPLW+ P G I LESF P+ A DFLI IAEP+ RP +H
Sbjct: 83 FGNRDF-SFLQLKPDHHNRPLWMDPELGFIILESFHPLAPPAQDFLITIAEPISRPTFLH 141
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT +SLYAAVSVGL DII L R KT VPDG+ +FI T SYGKVKLVLK+ +
Sbjct: 142 EYRLTMHSLYAAVSVGLNPLDIINTLNRFLKTPVPDGVRDFIIRTTDSYGKVKLVLKNTK 201
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTL 201
YF+ES +LQKLLKDPVI R+ E S T+
Sbjct: 202 YFVESNDPAILQKLLKDPVIGPLRVHETEEISTTM 236
>gi|225557061|gb|EEH05348.1| DNA repair helicase RAD25 [Ajellomyces capsulatus G186AR]
Length = 833
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 112/163 (68%), Gaps = 6/163 (3%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 80 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 138
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SYGK+K+VLK+NR
Sbjct: 139 EYRLTGNSLYAAVSVGLLPGDIINFLDRLSKTPLPETIKSFIVNFTKSYGKIKVVLKYNR 198
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
+F+ES LQ LL+D VI RL ++S+ +I QA K+
Sbjct: 199 FFVESSDPATLQMLLQDEVIGPQRL----QNSEGIIQQAAPKM 237
>gi|380478617|emb|CCF43492.1| DNA repair helicase RAD25 [Colletotrichum higginsianum]
Length = 439
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 57 MVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
+ LKPD+++RPLW+ P G IFLESF+P+ A DFLI IAEP+ RP +HEY LT +SL
Sbjct: 89 LALKPDYQNRPLWIDPAKGRIFLESFNPLAEQAQDFLITIAEPISRPSFVHEYALTTHSL 148
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL DII L R K +PD I +FI CT S+GKVKLVLK+ +YF+ES
Sbjct: 149 YAAVSVGLSPQDIINTLDRFLKMPLPDSIRKFIEGCTQSFGKVKLVLKNTKYFVESTDPV 208
Query: 176 VLQKLLKDPVIQDCRLRRDTEDSQT 200
+LQKLLKDP+I R+ E + T
Sbjct: 209 ILQKLLKDPIIGPLRVHGTEEITTT 233
>gi|322707230|gb|EFY98809.1| DNA repair helicase RAD25 [Metarhizium anisopliae ARSEF 23]
Length = 827
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 81 FGDRDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 139
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L+R KT +PD I FI CT SYGKVKLVLK+ +
Sbjct: 140 EYALTTHSLYAAVSVGLSPTDIINTLERFLKTPLPDEIRSFITSCTQSYGKVKLVLKNTK 199
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
Y++ESP E+LQ LLK+PVI R++ E
Sbjct: 200 YYVESPDPEMLQMLLKNPVIGPLRVQGTEE 229
>gi|212535202|ref|XP_002147757.1| TFIIH complex helicase Ssl2, putative [Talaromyces marneffei ATCC
18224]
gi|210070156|gb|EEA24246.1| TFIIH complex helicase Ssl2, putative [Talaromyces marneffei ATCC
18224]
Length = 832
Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 112/163 (68%), Gaps = 6/163 (3%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
+G KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 YGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAADFLTTIAEPLSRPVHLH 130
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGLE DII +L RLSKT +PD I FI T SYGK+KLVL +N+
Sbjct: 131 EYRLTGNSLYAAVSVGLEPKDIIHFLDRLSKTPIPDAIRSFIVDFTKSYGKIKLVLNNNK 190
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
Y++ES +LQ LL+D VI R+ + S+ +I QA K+
Sbjct: 191 YYVESTDPAMLQMLLQDDVIGTKRV----QGSEGIIQQAAPKM 229
>gi|322701630|gb|EFY93379.1| DNA repair helicase RAD25 [Metarhizium acridum CQMa 102]
Length = 827
Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 81 FGDRDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 139
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L+R KT +PD I FI CT SYGKVKLVLK+ +
Sbjct: 140 EYALTTHSLYAAVSVGLSPTDIINTLERFLKTPLPDEIRSFITSCTQSYGKVKLVLKNTK 199
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
Y++ESP E+LQ LLK+P+I R++ E
Sbjct: 200 YYVESPDPEMLQMLLKNPIIGPLRVQGTEE 229
>gi|240277609|gb|EER41117.1| DNA repair helicase RAD25 [Ajellomyces capsulatus H143]
Length = 1379
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 24 KKADIQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTI 82
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SY
Sbjct: 83 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPGDIINFLDRLSKTPLPETIKSFIVNFTKSY 142
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
GK+K+VLK+NR+F+ES LQ LL+D VI RL ++S+ +I QA K+
Sbjct: 143 GKIKVVLKYNRFFVESSDPATLQMLLQDEVIGPQRL----QNSEGIIQQAAPKM 192
>gi|358379026|gb|EHK16707.1| hypothetical protein TRIVIDRAFT_41182 [Trichoderma virens Gv29-8]
Length = 834
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG+ D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 84 FGSNDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 142
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL HDII L R KT +PD I FI CT SYGKVKLVLK+ +
Sbjct: 143 EYALTTHSLYAAVSVGLSPHDIINTLDRFLKTPLPDEIRSFIESCTQSYGKVKLVLKNTK 202
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
Y++ESP +LQ LLK+P I R++ E
Sbjct: 203 YYVESPDPNMLQMLLKNPRIGPLRVQGTAE 232
>gi|325093694|gb|EGC47004.1| DNA repair helicase RAD25 [Ajellomyces capsulatus H88]
Length = 1416
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 24 KKADIQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTI 82
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SY
Sbjct: 83 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPGDIINFLDRLSKTPLPETIKSFIVNFTKSY 142
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
GK+K+VLK+NR+F+ES LQ LL+D VI RL ++S+ +I QA K+
Sbjct: 143 GKIKVVLKYNRFFVESSDPATLQMLLQDEVIGPQRL----QNSEGIIQQAAPKM 192
>gi|449298112|gb|EMC94129.1| hypothetical protein BAUCODRAFT_221487 [Baudoinia compniacensis
UAMH 10762]
Length = 852
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 101/139 (72%), Gaps = 1/139 (0%)
Query: 59 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH+ RPLW+ + G + LE+FSP ++ A +FLI IAEP R ++HEY + A+SL+A
Sbjct: 94 LKPDHRLRPLWIDRHRGRVVLETFSPSFKQAQNFLINIAEPQSRTTNMHEYTINAHSLFA 153
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL DI+ L+ SKT VP+ ++EF++ T S+GKV+LVLKHNRYFIES A VL
Sbjct: 154 AVSVGLTEQDIVRQLELFSKTKVPESMIEFVHSVTQSFGKVRLVLKHNRYFIESQDASVL 213
Query: 178 QKLLKDPVIQDCRLRRDTE 196
Q LL+DPVI CR+ E
Sbjct: 214 QMLLRDPVISTCRVEESDE 232
>gi|219119406|ref|XP_002180464.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407937|gb|EEC47872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 720
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 100/137 (72%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
SRP W P+G+I+LE+F +Y A+DFL+AIAEPV RPE +H+YKLT YSLYAAV+ +E
Sbjct: 2 SRPCWTCPDGNIYLEAFHDLYVSAYDFLVAIAEPVARPEFLHQYKLTPYSLYAAVATNIE 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
T+ I+ L+RLSK +P +++FI CT YGK KLVLKHNR+++ES F VL++LL+DP
Sbjct: 62 TNAIVSVLERLSKNKLPSQVIKFIRECTQKYGKAKLVLKHNRFYVESEFPAVLRELLRDP 121
Query: 185 VIQDCRLRRDTEDSQTL 201
I R+ D D+ L
Sbjct: 122 TIAQARIVEDVVDASAL 138
>gi|46125805|ref|XP_387456.1| hypothetical protein FG07280.1 [Gibberella zeae PH-1]
Length = 872
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 3/156 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI I+EP+ RP +H
Sbjct: 82 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITISEPLSRPTFMH 140
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L R KT +PD I FI CT SYGKVKLVLK+ +
Sbjct: 141 EYALTTHSLYAAVSVGLSPEDIINTLDRFLKTPLPDEIRNFITSCTQSYGKVKLVLKNTK 200
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLI 202
Y++ESP +LQ LLK+P I R+ + TE+ T +
Sbjct: 201 YYVESPDPNMLQTLLKNPRIGPLRV-QGTEEITTSV 235
>gi|408399632|gb|EKJ78730.1| hypothetical protein FPSE_01098 [Fusarium pseudograminearum CS3096]
Length = 825
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 3/156 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI I+EP+ RP +H
Sbjct: 82 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITISEPLSRPTFMH 140
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L R KT +PD I FI CT SYGKVKLVLK+ +
Sbjct: 141 EYALTTHSLYAAVSVGLSPEDIINTLDRFLKTPLPDEIRNFITSCTQSYGKVKLVLKNTK 200
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLI 202
Y++ESP +LQ LLK+P I R+ + TE+ T +
Sbjct: 201 YYVESPDPNMLQTLLKNPRIGPLRV-QGTEEITTSV 235
>gi|326436958|gb|EGD82528.1| hypothetical protein PTSG_03178 [Salpingoeca sp. ATCC 50818]
Length = 804
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 38 KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAE 97
+++A P DE GA D + M LKPDH+ RP+ V P+ IFLE+FSPVY+ A +FLIAIAE
Sbjct: 42 REEAVAPHDEDGAIDM-SHMQLKPDHEVRPIIVTPDKRIFLETFSPVYQQAVEFLIAIAE 100
Query: 98 PVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGK 157
P RPE IHEY++T SLYAA S+GL IIE L RLSKTS+P + E++ T YGK
Sbjct: 101 PERRPESIHEYRMTRDSLYAAASLGLGADHIIEVLHRLSKTSIPAVVCEYVRHYTSRYGK 160
Query: 158 VKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
V L L+ NRYF+ES VLQ LL+DP IQ R+
Sbjct: 161 VTLFLEKNRYFLESSDPSVLQTLLRDPEIQSGRV 194
>gi|342885823|gb|EGU85775.1| hypothetical protein FOXB_03623 [Fusarium oxysporum Fo5176]
Length = 825
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 108/156 (69%), Gaps = 3/156 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI I+EP+ RP +H
Sbjct: 82 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITISEPLSRPTFMH 140
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L R KT +PD I FI CT SYGKVKLVLK+ +
Sbjct: 141 EYALTTHSLYAAVSVGLSPEDIINTLDRFLKTPLPDEIRNFITSCTQSYGKVKLVLKNTK 200
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLI 202
Y++ESP +LQ LLK+P I R+ + TE+ T +
Sbjct: 201 YYVESPDPNMLQTLLKNPKIGPLRV-QGTEEITTSV 235
>gi|223999873|ref|XP_002289609.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974817|gb|EED93146.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 625
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 100/140 (71%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
+ + LK DH SRP W P+G I+LE+F +Y A+DFL+AI+EPV RPE++HEYKLT YS
Sbjct: 3 SDLTLKSDHISRPCWTCPDGTIYLEAFHDLYTKAYDFLVAISEPVARPEYLHEYKLTPYS 62
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA 174
LYAAV+ +ET I++ L R SK +PDG+ FI CT YGK KLVLKHN++++ES
Sbjct: 63 LYAAVATNIETESIVKVLNRFSKNVLPDGVAAFIRECTKRYGKAKLVLKHNKFYVESEHP 122
Query: 175 EVLQKLLKDPVIQDCRLRRD 194
VL++LL+D +I R+ D
Sbjct: 123 AVLRELLRDDLISQARVAED 142
>gi|302916051|ref|XP_003051836.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732775|gb|EEU46123.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 802
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 106/155 (68%), Gaps = 2/155 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 57 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 115
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L R KT +P I FI CT SYGKVKLVLK+ +
Sbjct: 116 EYALTTHSLYAAVSVGLSPEDIINTLDRFLKTPLPGEIRNFITSCTQSYGKVKLVLKNTK 175
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTL 201
Y++ESP +LQ LLK+P I R++ E + T+
Sbjct: 176 YYVESPDPNMLQTLLKNPKIGPLRVQGTEEITTTV 210
>gi|242792361|ref|XP_002481937.1| TFIIH complex helicase Ssl2, putative [Talaromyces stipitatus ATCC
10500]
gi|218718525|gb|EED17945.1| TFIIH complex helicase Ssl2, putative [Talaromyces stipitatus ATCC
10500]
Length = 831
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 6/163 (3%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
+G KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 YGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAADFLTTIAEPLSRPVHLH 130
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGLE DII +L RLSKT +P+ I FI T SYGK+KLVL +N+
Sbjct: 131 EYRLTGNSLYAAVSVGLEPKDIIHFLDRLSKTPIPEAIRSFIIDFTKSYGKIKLVLNNNK 190
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
Y++ES +LQ LL+D +I R+ + S+ +I QA K+
Sbjct: 191 YYVESTDPAMLQMLLQDDIIGTKRV----QGSEGIIQQAAPKM 229
>gi|302417724|ref|XP_003006693.1| DNA repair helicase RAD25 [Verticillium albo-atrum VaMs.102]
gi|261354295|gb|EEY16723.1| DNA repair helicase RAD25 [Verticillium albo-atrum VaMs.102]
Length = 518
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWV-APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG +DY + + LKPD ++RPLW+ A IFLESFSP+ + DFLI IAEP+ RP +H
Sbjct: 80 FGKRDY-SYLSLKPDFQNRPLWIDASKARIFLESFSPLAQQCQDFLITIAEPISRPSFVH 138
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY L+ +SLYAAVSVGL DII L+R KT +P I EFI CT S+GKVKLVLK+ +
Sbjct: 139 EYALSPHSLYAAVSVGLSPADIINTLERFLKTPLPKQIREFIEGCTASFGKVKLVLKNTK 198
Query: 167 YFIESPFAEVLQKLLKDPVIQDCR 190
YF+ES VLQKLL+DP+I R
Sbjct: 199 YFVESADPVVLQKLLQDPIIGPLR 222
>gi|406700028|gb|EKD03215.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 8904]
Length = 874
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/141 (56%), Positives = 102/141 (72%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LK DH +RPLW+ G+I LE+F+ + A DFL+AIAEPV RP IHEY++T SL+AA
Sbjct: 95 LKADHANRPLWIDEGGNIILEAFAHLAPQAQDFLVAIAEPVSRPSLIHEYRITKPSLHAA 154
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
+SVGLET DII L RLSK +P+ +VE I T SYGK+KLVLKHNRY++ES LQ
Sbjct: 155 MSVGLETDDIIGVLSRLSKIPLPESLVEQIRDWTSSYGKIKLVLKHNRYWLESSVPAYLQ 214
Query: 179 KLLKDPVIQDCRLRRDTEDSQ 199
LLKD VI+ CR+ RD ++ +
Sbjct: 215 TLLKDEVIKTCRVHRDEQEGE 235
>gi|346978860|gb|EGY22312.1| DNA repair helicase RAD25 [Verticillium dahliae VdLs.17]
Length = 792
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 113/180 (62%), Gaps = 10/180 (5%)
Query: 20 GEPLDEDGVPVAAKKNV--------EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV- 70
E L E V +KNV E+ + FG +DY + + LKPD ++RPLW+
Sbjct: 44 AEALSEGEEDVNIEKNVGHFSVEGYERPSKSATSHIFGKRDY-SYLNLKPDFQNRPLWID 102
Query: 71 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIE 130
A IFLESFSP+ + DFLI IAEP+ RP +HEY L+ +SLYAAVSVGL DII
Sbjct: 103 ASKARIFLESFSPLAQQCQDFLITIAEPISRPSFVHEYALSPHSLYAAVSVGLSPADIIN 162
Query: 131 YLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
L+R KT +P I EFI CT S+GKVKLVLK+ +YF+ES VLQKLL+DP+I R
Sbjct: 163 TLERFLKTPLPKQIREFIEGCTASFGKVKLVLKNTKYFVESADPVVLQKLLQDPIIGPLR 222
>gi|401883704|gb|EJT47899.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 2479]
Length = 874
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/141 (56%), Positives = 102/141 (72%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LK DH +RPLW+ G+I LE+F+ + A DFL+AIAEPV RP IHEY++T SL+AA
Sbjct: 95 LKADHANRPLWIDEGGNIILEAFAHLAPQAQDFLVAIAEPVSRPSLIHEYRITKPSLHAA 154
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
+SVGLET DII L RLSK +P+ +VE I T SYGK+KLVLKHNRY++ES LQ
Sbjct: 155 MSVGLETDDIIGVLSRLSKIPLPESLVEQIRDWTSSYGKIKLVLKHNRYWLESSVPAYLQ 214
Query: 179 KLLKDPVIQDCRLRRDTEDSQ 199
LLKD VI+ CR+ RD ++ +
Sbjct: 215 TLLKDEVIKTCRVHRDEQEGE 235
>gi|440492855|gb|ELQ75388.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Trachipleistophora hominis]
Length = 666
Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 111/153 (72%), Gaps = 6/153 (3%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK +H P WV +G I LE+FSP+++ A DFLIAI+EP+ RP+HIHEYK+T+YSL
Sbjct: 19 RIVLKENHSDYPFWVNYDGIIILETFSPLFKAATDFLIAISEPISRPKHIHEYKITSYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAA SVGL T DI+ L RLSK +P I +FI CTLSYGK+KL+L+ ++YF+E +
Sbjct: 79 YAAASVGLNTEDILFSLDRLSKNVIPKCIRKFITACTLSYGKLKLILRESKYFMEIANGD 138
Query: 176 VLQKLLKDPVIQDCRLRRD------TEDSQTLI 202
VL+ +LKDP I ++++ +ED+++L+
Sbjct: 139 VLKTVLKDPQISSALIQQEIVADDVSEDTKSLM 171
>gi|452981911|gb|EME81670.1| hypothetical protein MYCFIDRAFT_154357 [Pseudocercospora fijiensis
CIRAD86]
Length = 807
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH RPLW+ P NG + LE+F+P ++ A +FLI IAEP R ++HEY ++ +SL+A
Sbjct: 53 LKPDHHLRPLWIDPQNGKVVLETFAPSFKQAQNFLINIAEPQSRTTNMHEYTISPHSLFA 112
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL DI+ L+ SKT VP+ I+ F++ T S+GKV+LVLKHN+YF+ES A VL
Sbjct: 113 AVSVGLTEQDIVRDLELFSKTKVPENIINFVHEVTQSFGKVRLVLKHNKYFVESNDASVL 172
Query: 178 QKLLKDPVIQDCRL 191
Q LL+DPVI CR+
Sbjct: 173 QMLLRDPVISSCRV 186
>gi|154285310|ref|XP_001543450.1| hypothetical protein HCAG_00496 [Ajellomyces capsulatus NAm1]
gi|150407091|gb|EDN02632.1| hypothetical protein HCAG_00496 [Ajellomyces capsulatus NAm1]
Length = 750
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 37 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 95
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 45 KKADIQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTI 103
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AEP+ RP H+HEY+LT SLYAAVSVGL DII +L RLSKT +P+ I FI T SY
Sbjct: 104 AEPLSRPTHLHEYRLTGNSLYAAVSVGLLPGDIINFLDRLSKTPLPETIKSFIVNFTKSY 163
Query: 156 GKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
GK+K+VLK+NR+F+ES LQ LL+D VI RL+
Sbjct: 164 GKIKVVLKYNRFFVESSDPATLQMLLQDEVIGPQRLQ 200
>gi|406861685|gb|EKD14738.1| DNA repair helicase rad25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 839
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 40 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEP 98
D+A E G D+ + + LKPDH +RPLW+ P G I +ESFSP+ A DFL +AEP
Sbjct: 78 DSASHHFEGGNHDF-SYLSLKPDHHNRPLWIDPLKGKIIMESFSPLATEAQDFLTTVAEP 136
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
RP+ +HEY LT +SLYAAVSVGL+ DII L +LSK +P I EFI CT SYGKV
Sbjct: 137 QSRPQFLHEYSLTPHSLYAAVSVGLDPKDIISVLDKLSKVPIPGSIREFITGCTHSYGKV 196
Query: 159 KLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
KLVLK+ ++F+ES E+LQ+LLKD VI R+ TED T
Sbjct: 197 KLVLKNTKHFVESSDPEMLQRLLKDAVIGPLRV-HGTEDITT 237
>gi|358391751|gb|EHK41155.1| hypothetical protein TRIATDRAFT_249572 [Trichoderma atroviride IMI
206040]
Length = 801
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG+ D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 58 FGSNDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 116
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL HDII L R KT +P I FI CT SYGKVKLVLK+ +
Sbjct: 117 EYALTTHSLYAAVSVGLSPHDIINTLDRFLKTPLPVEIRSFIESCTQSYGKVKLVLKNTK 176
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
Y++ESP +LQ LLK+P I R++ E
Sbjct: 177 YYVESPDPNMLQMLLKNPRIGPLRVQGTAE 206
>gi|258571163|ref|XP_002544385.1| DNA repair helicase RAD25 [Uncinocarpus reesii 1704]
gi|237904655|gb|EEP79056.1| DNA repair helicase RAD25 [Uncinocarpus reesii 1704]
Length = 791
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 104/149 (69%), Gaps = 5/149 (3%)
Query: 62 DHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
DH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+HEY+LT SLYAAVS
Sbjct: 50 DHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVS 109
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL DII +L RLSKT +P+ I +FI T SYGK+K+VLKHNR+++ES +LQ L
Sbjct: 110 VGLLPADIINFLDRLSKTPLPETIKQFIVNFTKSYGKIKVVLKHNRFYVESSDPTMLQML 169
Query: 181 LKDPVIQDCRLRRDTEDSQTLINQADKKL 209
L+D VI RL E+S+ +I QA KL
Sbjct: 170 LQDKVIGSQRL----ENSEGIIQQAAPKL 194
>gi|328858647|gb|EGG07759.1| hypothetical protein MELLADRAFT_85492 [Melampsora larici-populina
98AG31]
Length = 881
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 122/202 (60%), Gaps = 17/202 (8%)
Query: 18 DPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG--- 74
+P PL D +++ E+ D P DY+ + LK DH SRPL+++PN
Sbjct: 90 NPSNPLSYD----MSEETGEQSDIVFPP----GSDYK-YLNLKADHASRPLYISPNTASR 140
Query: 75 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR 134
+I LE+F P+ A DFLI ++EPV RP HIHEYKLT +SL AA+SVGL+T DIIE L R
Sbjct: 141 NIILEAFHPLAAQAQDFLITVSEPVSRPTHIHEYKLTKHSLQAAISVGLQTEDIIEVLNR 200
Query: 135 LSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRD 194
LSK V + EFI T SYGKVKLVLK N Y +ES EVL++LL+D VI RL
Sbjct: 201 LSKVRVSAELAEFIRESTASYGKVKLVLKKNSYHVESSDPEVLRRLLRDSVISQARLA-- 258
Query: 195 TEDSQTLINQADKKLKAPQFGL 216
ED+ N+ D + FGL
Sbjct: 259 PEDAGAENNKEDTMVT---FGL 277
>gi|389638922|ref|XP_003717094.1| DNA repair helicase RAD25 [Magnaporthe oryzae 70-15]
gi|351642913|gb|EHA50775.1| DNA repair helicase RAD25 [Magnaporthe oryzae 70-15]
gi|440473086|gb|ELQ41908.1| DNA repair helicase RAD25 [Magnaporthe oryzae Y34]
gi|440478289|gb|ELQ59131.1| DNA repair helicase RAD25 [Magnaporthe oryzae P131]
Length = 835
Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 102/145 (70%), Gaps = 2/145 (1%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 107
G +DY + + LKPDH +RPLW+ P+ G I LESF+P+ A DFLI IAEP RP +HE
Sbjct: 88 GKRDY-SYLKLKPDHANRPLWINPDKGIIILESFNPLAEQAQDFLITIAEPQSRPTFLHE 146
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y LTA+SLYAAVSVGL DII L R KT +PD + +FI + T SYGKVKLVLK+ +Y
Sbjct: 147 YALTAHSLYAAVSVGLHPQDIISTLDRFLKTPLPDSMRDFIEVSTKSYGKVKLVLKNTQY 206
Query: 168 FIESPFAEVLQKLLKDPVIQDCRLR 192
F+ES VLQ LLKD VI R++
Sbjct: 207 FVESSDPNVLQILLKDEVIGPLRVQ 231
>gi|340520673|gb|EGR50909.1| Rad3 protein [Trichoderma reesei QM6a]
Length = 829
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 102/150 (68%), Gaps = 2/150 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 83 FGNNDF-SYLELKKDHRNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 141
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L R KT +P+ I FI CT SYGKVKLVLK+ +
Sbjct: 142 EYALTTHSLYAAVSVGLSPKDIINTLDRFLKTPLPEEIQSFIESCTQSYGKVKLVLKNTK 201
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTE 196
Y++ESP +LQ LLK+P I R++ E
Sbjct: 202 YYVESPDPNMLQMLLKNPKIGPLRVQGTEE 231
>gi|398393830|ref|XP_003850374.1| hypothetical protein MYCGRDRAFT_110466 [Zymoseptoria tritici
IPO323]
gi|339470252|gb|EGP85350.1| hypothetical protein MYCGRDRAFT_110466 [Zymoseptoria tritici
IPO323]
Length = 853
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 97/133 (72%), Gaps = 1/133 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH RPLW+ P NG + LE+F+P ++ A +FLI IAEP R ++HEY ++ +SL+A
Sbjct: 101 LKADHHLRPLWIDPQNGKVVLETFAPSFKQAQNFLINIAEPQSRTTNMHEYTISPHSLFA 160
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL DII L+ SKT VP I++F++ T S+GKV+LVLKHN+YFIES A VL
Sbjct: 161 AVSVGLTEQDIIRDLELFSKTKVPQNIIDFVHEVTQSFGKVRLVLKHNKYFIESNDASVL 220
Query: 178 QKLLKDPVIQDCR 190
Q LL+DPVI CR
Sbjct: 221 QMLLRDPVISTCR 233
>gi|291000979|ref|XP_002683056.1| predicted protein [Naegleria gruberi]
gi|284096685|gb|EFC50312.1| predicted protein [Naegleria gruberi]
Length = 729
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 100/136 (73%), Gaps = 4/136 (2%)
Query: 55 AQMVLKPDHKSRPLWVAPNG----HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+ + LKPDHK RP+WV HIF+E+FSP+Y+ A+DFL+A+AEPV RPE++HEY L
Sbjct: 74 SNLELKPDHKLRPVWVCSGTDGKFHIFMETFSPIYQQAYDFLVAVAEPVSRPENLHEYVL 133
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T YSLYAAVS+G+ T II+ L++LSK + + ++ FI T YG VKLVL+ NR+F+E
Sbjct: 134 TEYSLYAAVSIGMNTEQIIQVLEKLSKVKLSEALINFIRDVTRKYGNVKLVLQKNRFFVE 193
Query: 171 SPFAEVLQKLLKDPVI 186
SP +++KL +D +I
Sbjct: 194 SPHLTIMEKLYEDKII 209
>gi|429854912|gb|ELA29893.1| DNA repair helicase rad25 [Colletotrichum gloeosporioides Nara gc5]
Length = 826
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 57 MVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
+ +KPD +RPL++ P G IFLESF+P+ A DFLI IAEP+ RP IHEY LT +SL
Sbjct: 92 LQMKPDSTNRPLYIDPAKGRIFLESFNPLAEQAQDFLITIAEPISRPSFIHEYALTTHSL 151
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL DII L R K +P+ I +FI CT S+GKVKLVLK+ +YF+ES
Sbjct: 152 YAAVSVGLSPGDIINTLDRFLKMPLPESIRKFIEGCTQSFGKVKLVLKNTKYFVESTDPV 211
Query: 176 VLQKLLKDPVIQDCRLRRDTEDSQT 200
+LQKLLKDPVI R+ + E + T
Sbjct: 212 ILQKLLKDPVIGPLRVHGNEEITTT 236
>gi|403173052|ref|XP_003332158.2| DNA excision repair protein ERCC-3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375170107|gb|EFP87739.2| DNA excision repair protein ERCC-3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 980
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 30 VAAKKNVEKDDAA--VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN---GHIFLESFSPV 84
++ ++N+ D + D DYR + LK DH SRPL+++PN I LE+F P+
Sbjct: 182 ISTEQNMNSDAQGDFIATDFPAGCDYR-YLSLKADHTSRPLYISPNMATRTIILEAFHPL 240
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
A DFLI IAEPV RP HIHEYKLT +SL AA+SVGL+T DII+ L RLSK V +
Sbjct: 241 ASQAQDFLITIAEPVSRPSHIHEYKLTKHSLQAAISVGLQTEDIIDVLNRLSKVRVSAQL 300
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
EFI T SYGKVKLVLK N Y +ES EVL++LL+D +I RL
Sbjct: 301 AEFIRESTASYGKVKLVLKKNSYHVESSDPEVLRRLLRDSIISQARL 347
>gi|336271467|ref|XP_003350492.1| hypothetical protein SMAC_02205 [Sordaria macrospora k-hell]
gi|380090156|emb|CCC11983.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 867
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 102/145 (70%), Gaps = 2/145 (1%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 107
G +D+ + + LKPDH +PLW+ P G I LE FSP DFL+ IAEP RP +HE
Sbjct: 102 GKRDF-SYLNLKPDHDQKPLWIDPEKGTIILEKFSPDADRVTDFLVTIAEPKSRPHFLHE 160
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y+LTA+SLYA VS+GL++ DII+ L R KT +P+ I FI CT SYGKVKLVL +N+Y
Sbjct: 161 YQLTAHSLYAGVSIGLQSKDIIDTLDRFLKTPLPESIRGFIESCTKSYGKVKLVLNNNKY 220
Query: 168 FIESPFAEVLQKLLKDPVIQDCRLR 192
F+ES AE+LQKLL+D VI R++
Sbjct: 221 FVESSDAELLQKLLRDEVIGKWRIQ 245
>gi|340905279|gb|EGS17647.1| DNA repair helicase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 867
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 107/161 (66%), Gaps = 5/161 (3%)
Query: 40 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGH-IFLESFSPVYRHAHDFLIAIAEP 98
DAA P F KD+ + + LKPDH +RPLW+ PN I LE F+P+ A DFLI IAEP
Sbjct: 94 DAATPY--FKKKDF-SYLPLKPDHYNRPLWIDPNTQTIVLERFNPLSEQATDFLITIAEP 150
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
RP +HEY +T +SLYAAVSVGL DII L R KT +P E+I CT SYGKV
Sbjct: 151 RSRPTFLHEYVMTTHSLYAAVSVGLRPKDIINTLDRFLKTPLPASTREYIETCTKSYGKV 210
Query: 159 KLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR-RDTEDS 198
KLVLK+N+Y++ES A++LQ LL DPVI R++ DT S
Sbjct: 211 KLVLKNNKYYVESVDAQMLQILLNDPVIGKLRVQGTDTTSS 251
>gi|387596504|gb|EIJ94125.1| DNA repair helicase rad25, partial [Nematocida parisii ERTm1]
Length = 653
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
++LK +H +RP+WV+ +G I LE S + A DFLIAIAEPV RP ++HEYKLTAYSLY
Sbjct: 17 IILKENHHTRPMWVSADGIIILEMHSEQSQQAQDFLIAIAEPVTRPSNMHEYKLTAYSLY 76
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AA SVGL+T DII+ + R SK VP I+ FI CT SYGK+K+V++ RYFIES +
Sbjct: 77 AAASVGLKTEDIIDTMDRFSKNKVPLSILNFIRSCTTSYGKIKMVIRQGRYFIESQENQN 136
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLIN 203
+ L +DPVIQ+ + TE+ ++++N
Sbjct: 137 ISFLYRDPVIQELCV-PITEEKRSIVN 162
>gi|397648048|gb|EJK77960.1| hypothetical protein THAOC_00170, partial [Thalassiosira oceanica]
Length = 594
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 50 AKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYK 109
DY + + LK DH +RP W P+G I+LE+F +Y A+DFL+AI+EPV RPE++HEYK
Sbjct: 30 GSDY-SDLPLKADHPARPCWTCPDGTIYLEAFHSLYAKAYDFLVAISEPVARPEYLHEYK 88
Query: 110 LTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
LT YSLYAAV+ ++T I+ L R SK +P G+ +F+ CT YGK KLVLK NRY +
Sbjct: 89 LTPYSLYAAVATNIDTESIVRVLDRFSKNQLPKGVADFVRECTRRYGKAKLVLKSNRYHV 148
Query: 170 ESPFAEVLQKLLKDPVIQDCRLRRD 194
ES EVL++LL+D +I R+ D
Sbjct: 149 ESEHPEVLRELLRDDLISQARVSTD 173
>gi|387594649|gb|EIJ89673.1| DNA repair helicase rad25 [Nematocida parisii ERTm3]
Length = 653
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
++LK +H +RP+WV+ +G I LE S + A DFLIAIAEPV RP ++HEYKLTAYSLY
Sbjct: 17 IILKENHHTRPMWVSADGIIILEMHSEQSQQAQDFLIAIAEPVTRPSNMHEYKLTAYSLY 76
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AA SVGL+T DII+ + R SK VP I+ FI CT SYGK+K+V++ RYFIES +
Sbjct: 77 AAASVGLKTEDIIDTMDRFSKNKVPLSILNFIRSCTTSYGKIKMVIRQGRYFIESQENQN 136
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLIN 203
+ L +DPVIQ+ + TE+ ++++N
Sbjct: 137 ISFLYRDPVIQELCV-PITEEKRSIVN 162
>gi|347831594|emb|CCD47291.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Botryotinia fuckeliana]
Length = 845
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH +RPLW+ P I LESFSP+ HA DFL IAEP RP +H
Sbjct: 96 FGNNDF-SYLSLKPDHANRPLWIDPEKARIILESFSPLAAHAQDFLTTIAEPKSRPSFLH 154
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL+ DI+ L RLSK +P+ + +FI C+ SYGKVKLVLK+ +
Sbjct: 155 EYALTPHSLYAAVSVGLDPKDIVNVLDRLSKIPIPENVKKFIINCSQSYGKVKLVLKNTK 214
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDT 195
+++E+ ++LQ+LL DP+I R++ T
Sbjct: 215 HYVETSDPDLLQRLLSDPIIGPLRVQGST 243
>gi|154317790|ref|XP_001558214.1| hypothetical protein BC1G_02878 [Botryotinia fuckeliana B05.10]
Length = 845
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH +RPLW+ P I LESFSP+ HA DFL IAEP RP +H
Sbjct: 96 FGNNDF-SYLSLKPDHANRPLWIDPEKARIILESFSPLAAHAQDFLTTIAEPKSRPSFLH 154
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL+ DI+ L RLSK +P+ + +FI C+ SYGKVKLVLK+ +
Sbjct: 155 EYALTPHSLYAAVSVGLDPKDIVNVLDRLSKIPIPENVKKFIINCSQSYGKVKLVLKNTK 214
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDT 195
+++E+ ++LQ+LL DP+I R++ T
Sbjct: 215 HYVETSDPDLLQRLLSDPIIGPLRVQGST 243
>gi|85084541|ref|XP_957329.1| DNA repair helicase RAD25 [Neurospora crassa OR74A]
gi|28918419|gb|EAA28093.1| DNA repair helicase RAD25 [Neurospora crassa OR74A]
Length = 862
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 102/145 (70%), Gaps = 2/145 (1%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 107
G +D+ + + LKPDH +PLW+ P G I LE FSP DFL+ IAEP RP +HE
Sbjct: 102 GKRDF-SYLNLKPDHDQKPLWIDPEKGTIILEKFSPDADRVTDFLVTIAEPKSRPHFLHE 160
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y+LTA+SLYA VS+GL++ DII+ L R KT +P+ I FI CT SYGKVKLVL +N+Y
Sbjct: 161 YQLTAHSLYAGVSIGLQSKDIIDTLDRFLKTPLPESIRLFIESCTKSYGKVKLVLNNNKY 220
Query: 168 FIESPFAEVLQKLLKDPVIQDCRLR 192
F+ES AE+LQKLL+D VI R++
Sbjct: 221 FVESSDAELLQKLLRDEVIGKWRVQ 245
>gi|336469324|gb|EGO57486.1| DNA repair helicase RAD25 [Neurospora tetrasperma FGSC 2508]
gi|350291041|gb|EGZ72255.1| DNA repair helicase RAD25 [Neurospora tetrasperma FGSC 2509]
Length = 864
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 102/145 (70%), Gaps = 2/145 (1%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 107
G +D+ + + LKPDH +PLW+ P G I LE FSP DFL+ IAEP RP +HE
Sbjct: 102 GKRDF-SYLNLKPDHDQKPLWIDPEKGTIILEKFSPDADRVTDFLVTIAEPKSRPHFLHE 160
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y+LTA+SLYA VS+GL++ DII+ L R KT +P+ I FI CT SYGKVKLVL +N+Y
Sbjct: 161 YQLTAHSLYAGVSIGLQSKDIIDTLDRFLKTPLPESIRLFIESCTKSYGKVKLVLNNNKY 220
Query: 168 FIESPFAEVLQKLLKDPVIQDCRLR 192
F+ES AE+LQKLL+D VI R++
Sbjct: 221 FVESSDAELLQKLLRDEVIGKWRVQ 245
>gi|367050828|ref|XP_003655793.1| hypothetical protein THITE_2119890 [Thielavia terrestris NRRL 8126]
gi|347003057|gb|AEO69457.1| hypothetical protein THITE_2119890 [Thielavia terrestris NRRL 8126]
Length = 861
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 104/153 (67%), Gaps = 4/153 (2%)
Query: 40 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEP 98
DAA P F +D+ + + LKPDH++RPLW+ P+ I LE F+P+ A DFLI IAEP
Sbjct: 94 DAATPF--FRKRDF-SHLPLKPDHQNRPLWIDPDSCTIVLERFNPLAEQATDFLITIAEP 150
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
RP +HEY LT +SLYAAVSVGL DII L R KT++P + I T SYGKV
Sbjct: 151 KSRPTFLHEYALTPHSLYAAVSVGLRPRDIINTLDRFLKTALPASVRREIENHTRSYGKV 210
Query: 159 KLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
KLVLKHN+YF+ES AEVLQ LL+DPVI R+
Sbjct: 211 KLVLKHNKYFVESVDAEVLQTLLRDPVIGSLRV 243
>gi|378756456|gb|EHY66480.1| DNA repair helicase rad25 [Nematocida sp. 1 ERTm2]
Length = 347
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 96/132 (72%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
++LK +H +RP+WV+ +G I LE S + A DFLIAIAEPV RP ++HEYKLTAYSLY
Sbjct: 17 IILKENHAARPMWVSADGVIILEMHSEQSQQAQDFLIAIAEPVTRPCNMHEYKLTAYSLY 76
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AA SVGL+T DII+ + R SK VP I+ FI CT SYGK+K+V++ RYFIES +
Sbjct: 77 AAASVGLKTEDIIDTMDRFSKNKVPLSILNFIRSCTTSYGKIKMVIRQGRYFIESQENQN 136
Query: 177 LQKLLKDPVIQD 188
+ L +DPVIQ+
Sbjct: 137 ISFLYRDPVIQE 148
>gi|378728720|gb|EHY55179.1| DNA excision repair protein ERCC-3 [Exophiala dermatitidis
NIH/UT8656]
Length = 852
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 105/151 (69%), Gaps = 9/151 (5%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNGHI--------FLESFSPVYRHAHDFLIAIAEPV 99
FG KD+ + + LKPDH++RPLW+ PN I LESFSP+ A D L IAEP
Sbjct: 78 FGDKDF-SWLSLKPDHENRPLWIDPNVSIGSKKGPKIILESFSPLAAQATDLLTTIAEPQ 136
Query: 100 CRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVK 159
RP ++HEY+ T +SLYAA+SVGL DII L++LSKT VP +++FIN T +YGKV+
Sbjct: 137 SRPTYLHEYRFTEHSLYAALSVGLRGEDIIRALEKLSKTPVPQTVIDFINRHTKTYGKVR 196
Query: 160 LVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
LVL++N++++ES E++ LL+DP+I C+
Sbjct: 197 LVLRNNKFYVESDEREIIDMLLRDPIIGPCK 227
>gi|367027018|ref|XP_003662793.1| hypothetical protein MYCTH_2303821 [Myceliophthora thermophila ATCC
42464]
gi|347010062|gb|AEO57548.1| hypothetical protein MYCTH_2303821 [Myceliophthora thermophila ATCC
42464]
Length = 863
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 4/160 (2%)
Query: 34 KNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFL 92
+ V + DAA P F +D+ + + LKPDH++RPLW+ P+ I LE F+P+ A DFL
Sbjct: 88 REVRRYDAASPF--FRKRDF-SHLPLKPDHQNRPLWIDPDSCTIVLERFNPLAEQATDFL 144
Query: 93 IAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCT 152
I IAEP RP +HEY LT +SLYAAVSVGL DII L+R KTS+PD + + I T
Sbjct: 145 ITIAEPKSRPTFLHEYALTPHSLYAAVSVGLRPKDIINTLERFLKTSLPDIVRKKIEDHT 204
Query: 153 LSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
S+GKVKLVLKHN+Y++ES AEVLQ LLKD VI R++
Sbjct: 205 RSFGKVKLVLKHNKYYVESADAEVLQTLLKDKVIGALRVQ 244
>gi|453083736|gb|EMF11781.1| TFIIH basal transcription factor complex helicase XPB subunit
[Mycosphaerella populorum SO2202]
Length = 847
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 97/133 (72%), Gaps = 1/133 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH RPLW+ P NG + LE+F+P ++ A +FLI IAEP R ++HEY ++ +SL+A
Sbjct: 90 LKPDHHLRPLWIEPKNGKVVLETFAPNFKQAQNFLINIAEPQSRTTNMHEYTISPHSLFA 149
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGL DII L+ SKT VP I++F++ T S+GKV+LVLKHN+YFIES A VL
Sbjct: 150 AVSVGLTEKDIIRDLELFSKTKVPANIIDFVHEVTQSFGKVRLVLKHNKYFIESNDALVL 209
Query: 178 QKLLKDPVIQDCR 190
Q LL+DP+I R
Sbjct: 210 QTLLRDPIIAGTR 222
>gi|328773269|gb|EGF83306.1| hypothetical protein BATDEDRAFT_34108 [Batrachochytrium
dendrobatidis JAM81]
Length = 823
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
Query: 40 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPV 99
A V + +K+Y A + LKPDH RPLWV G I LE+FS + A DFL AIAEPV
Sbjct: 40 SADVLQGHSTSKNY-AALGLKPDHLLRPLWVCNTGRIILEAFSVLTFQAQDFLTAIAEPV 98
Query: 100 CRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVK 159
RPEHIHEY+LT YSLYAA+SVGL II+ L+ LSK+ +P+ + EFI+ + SYGKVK
Sbjct: 99 SRPEHIHEYRLTEYSLYAAISVGLRPKSIIDVLELLSKSHLPEEVKEFIHKHSCSYGKVK 158
Query: 160 LVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQA 205
++L++ R+++E+ VL KLL DP+I + L +++D+ I+ A
Sbjct: 159 VILRNGRFWLETTDDTVLAKLLNDPIISNS-LVMESKDTSIHIDAA 203
>gi|429964053|gb|ELA46051.1| DNA repair helicase rad25 [Vavraia culicis 'floridensis']
Length = 667
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 102/139 (73%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK +H P WV +G I LE+FSP+++ A DFLIAI+EP+ RP+HIHEYK+T+YSL
Sbjct: 19 RIVLKDNHLDYPFWVNYDGIIILETFSPLFKAATDFLIAISEPISRPKHIHEYKITSYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAA SVGL T DI+ L RLSK +P I +FI CTLSYGK+KL+L+ ++YFIE +
Sbjct: 79 YAAASVGLNTDDILFSLDRLSKNVIPKCIRKFIIACTLSYGKLKLILRESKYFIEILNED 138
Query: 176 VLQKLLKDPVIQDCRLRRD 194
VL+ +LKD I ++++
Sbjct: 139 VLKTVLKDSQISTALIQQE 157
>gi|328767381|gb|EGF77431.1| hypothetical protein BATDEDRAFT_20761 [Batrachochytrium
dendrobatidis JAM81]
Length = 777
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 40 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPV 99
A V + +K+Y A + LKPDH RPLWV G I LE+FS + A DFL AIAEPV
Sbjct: 40 SADVLQGHSTSKNY-AALGLKPDHLLRPLWVCNTGRIILEAFSVLTFQAQDFLTAIAEPV 98
Query: 100 CRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVK 159
RPEHIHEY+LT YSLYAA+SVGL II+ L+ LSK+ +P+ + EFI+ + SYGKVK
Sbjct: 99 SRPEHIHEYRLTEYSLYAAISVGLRPKSIIDVLELLSKSHLPEEVKEFIHKHSCSYGKVK 158
Query: 160 LVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
++L++ R+++E+ VL KLL DP+I +
Sbjct: 159 VILRNGRFWLETTDDTVLAKLLNDPIISN 187
>gi|116191997|ref|XP_001221811.1| hypothetical protein CHGG_05716 [Chaetomium globosum CBS 148.51]
gi|88181629|gb|EAQ89097.1| hypothetical protein CHGG_05716 [Chaetomium globosum CBS 148.51]
Length = 808
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 101/145 (69%), Gaps = 2/145 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F +D+ + + LKPDH++RPLW+ P+ + LE F+P+ A DFLI IAEP RP +H
Sbjct: 100 FKKRDF-SYLPLKPDHQNRPLWIDPDSCTVVLERFNPLAEQATDFLITIAEPKSRPTFLH 158
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY LT +SLYAAVSVGL DII L+R KTS+PD + I T S+GKVKLVLKHN+
Sbjct: 159 EYALTPHSLYAAVSVGLRPRDIINTLERFLKTSLPDVVRRKIEDHTKSFGKVKLVLKHNK 218
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRL 191
YF+ES AEVLQ LLKD VI R+
Sbjct: 219 YFVESVDAEVLQTLLKDQVIGSLRV 243
>gi|58259069|ref|XP_566947.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|57223084|gb|AAW41128.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 866
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 100/146 (68%)
Query: 58 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHEY++T SL++
Sbjct: 106 TLKGDHSLRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPALIHEYRITKPSLHS 165
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
A+S+GLET IIE L RLSKT + +V I T S+GKV+LVLK NRYF+E+ E L
Sbjct: 166 AMSIGLETKVIIEVLSRLSKTPLSPRLVARIEEWTASFGKVRLVLKDNRYFLETSVPEFL 225
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLIN 203
QKL+ D VI++C + R+ E T+
Sbjct: 226 QKLMNDEVIKECMVHREEETGPTVFG 251
>gi|405117967|gb|AFR92742.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 866
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 100/146 (68%)
Query: 58 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHEY++T SL++
Sbjct: 106 TLKGDHALRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPSLIHEYRITKPSLHS 165
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
A+S+GLET IIE L RLSKT + +V I T S+GKV+LVLK NRYF+E+ E L
Sbjct: 166 AMSIGLETKVIIEVLSRLSKTPLSPRLVARIEEWTASFGKVRLVLKDNRYFLETSVPEFL 225
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLIN 203
QKL+ D VI++C + R+ E T+
Sbjct: 226 QKLMNDEVIKECMVHREEEAGPTVFG 251
>gi|321249760|ref|XP_003191564.1| general RNA polymerase II transcription factor [Cryptococcus gattii
WM276]
gi|317458031|gb|ADV19777.1| General RNA polymerase II transcription factor, putative
[Cryptococcus gattii WM276]
Length = 866
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 100/146 (68%)
Query: 58 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHEY++T SL++
Sbjct: 106 TLKGDHGLRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPSLIHEYRITKPSLHS 165
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
A+S+GLET IIE L RLSKT + +V I T S+GKV+LVLK NRYF+E+ E L
Sbjct: 166 AMSIGLETKVIIEVLSRLSKTPLSPRLVARIEEWTASFGKVRLVLKDNRYFLETNVPEFL 225
Query: 178 QKLLKDPVIQDCRLRRDTEDSQTLIN 203
QKL+ D VI++C + R+ E T+
Sbjct: 226 QKLMNDEVIKECMVHREEETGPTVFG 251
>gi|320040709|gb|EFW22642.1| DNA repair helicase RAD25 [Coccidioides posadasii str. Silveira]
Length = 203
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 137
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY+LT SLYAAVSVGL DII +L RLSKT +P+ I +FI T SYGK+K+VLKHNR
Sbjct: 138 EYRLTGNSLYAAVSVGLLPADIINFLDRLSKTPLPETIKQFIVNFTKSYGKIKVVLKHNR 197
Query: 167 YFIES 171
+ +ES
Sbjct: 198 FSVES 202
>gi|342877523|gb|EGU78974.1| hypothetical protein FOXB_10508 [Fusarium oxysporum Fo5176]
Length = 756
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 101/157 (64%), Gaps = 9/157 (5%)
Query: 61 PDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAV 119
PD +RPLW+ P+ G+I LE F P+ A DFL+ IAEP RP +HEYK+T++SLYAAV
Sbjct: 29 PDSDNRPLWIDPDKGYIILERFHPLADLATDFLVTIAEPQSRPAFLHEYKITSHSLYAAV 88
Query: 120 SVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
SVGL DII L + KT +P I +FI CT S+GKVKLVLK N+YF+ES A+VLQ
Sbjct: 89 SVGLNGEDIINTLDKFLKTELPQTIRDFIRSCTKSFGKVKLVLKDNKYFVESGDADVLQT 148
Query: 180 LLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGL 216
LLKD +I R+ ED T +AP G+
Sbjct: 149 LLKDNIIGPLRVNGSGEDITT--------TRAPALGV 177
>gi|396492464|ref|XP_003843805.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Leptosphaeria maculans JN3]
gi|312220385|emb|CBY00326.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Leptosphaeria maculans JN3]
Length = 806
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 117/200 (58%), Gaps = 8/200 (4%)
Query: 10 VEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 69
+ D+ D E D + AK +D AA D F D + LKPDH+ RPLW
Sbjct: 29 MSDQETFDQLKEEFDVKAMTKRAKAGRVRDAAA---DLFRKSD-QWNAPLKPDHQDRPLW 84
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
V G I LESF P++ A DFLI IAEP R +HEY+LT +SL+AAVSVG + +II
Sbjct: 85 VNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAAVSVGHSSKEII 144
Query: 130 EYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
+ L SKT++ D IV FI T ++GK K+VLK +IES A +LQKLL+DP++ +C
Sbjct: 145 DRLDTYSKTALSDTIVGFIQKSTSAFGKAKIVLKQTLSYIESEDAAILQKLLRDPIVAEC 204
Query: 190 RLRRDTEDSQTLINQADKKL 209
R + S LI +A KL
Sbjct: 205 R----ADTSGGLIKEAAPKL 220
>gi|361127562|gb|EHK99526.1| putative DNA repair helicase RAD25 [Glarea lozoyensis 74030]
Length = 773
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 106/156 (67%), Gaps = 3/156 (1%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ M LKPDH +RP+W+ P G I +ESF+ A DFL +AEP+ RP+HI
Sbjct: 23 FGNNDF-TWMNLKPDHANRPMWIDPKKGRIIVESFAKYKEQALDFLTTVAEPLSRPKHIF 81
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
E+ LT +SLYAAVSVGL +II L +SKT +P+ I EFI CT SYGKVKLVLK+ +
Sbjct: 82 EFALTPHSLYAAVSVGLTPEEIIGNLDMMSKTPMPENIREFILSCTHSYGKVKLVLKNTK 141
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLI 202
++IESP + LQKLL+D VI R+ + TE+ T I
Sbjct: 142 HYIESPDPQQLQKLLQDEVIGPLRV-QGTEEIITTI 176
>gi|322784714|gb|EFZ11548.1| hypothetical protein SINV_16244 [Solenopsis invicta]
Length = 111
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 75/85 (88%)
Query: 26 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 85
DGVP AAK +VEK D EDEFGAKDYR+QM+LKPD SRPLWVAPNGHIFLESFSPVY
Sbjct: 27 DGVPDAAKNDVEKQDECAIEDEFGAKDYRSQMILKPDCSSRPLWVAPNGHIFLESFSPVY 86
Query: 86 RHAHDFLIAIAEPVCRPEHIHEYKL 110
+HAHDFLIAI+EPVCRPEHIHE +L
Sbjct: 87 KHAHDFLIAISEPVCRPEHIHEVRL 111
>gi|134107131|ref|XP_777878.1| hypothetical protein CNBA5750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260576|gb|EAL23231.1| hypothetical protein CNBA5750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 866
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 97/137 (70%)
Query: 58 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHEY++T SL++
Sbjct: 106 TLKGDHSLRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPALIHEYRITKPSLHS 165
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
A+S+GLET IIE L RLSKT + +V I T S+GKV+LVLK NRYF+E+ E L
Sbjct: 166 AMSIGLETKVIIEVLSRLSKTPLSPRLVARIEEWTASFGKVRLVLKDNRYFLETSVPEFL 225
Query: 178 QKLLKDPVIQDCRLRRD 194
QKL+ D VI++C + R+
Sbjct: 226 QKLMNDEVIKECMVHRE 242
>gi|402086817|gb|EJT81715.1| DNA repair helicase RAD25 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 818
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+D+ A + LKPDH+ RPL + G ++LE+F P+ DFLI +AEPV RP IHEY+L
Sbjct: 74 RDFTA-LALKPDHQDRPLRIDGWGKLYLENFHPLAPRVQDFLITVAEPVSRPTFIHEYRL 132
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
TA+SLYAAVSVGL DI+ L R K +P + ++ C SYGKVKLVL+ N+YF+E
Sbjct: 133 TAHSLYAAVSVGLTPKDILSTLDRFLKNEMPPNVASYVMHCGQSYGKVKLVLRDNKYFVE 192
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDSQT 200
+ VLQ LLKDP I CR+ TE++ T
Sbjct: 193 TADPAVLQMLLKDPEIGPCRV-MGTEETVT 221
>gi|367055690|ref|XP_003658223.1| hypothetical protein THITE_2156915 [Thielavia terrestris NRRL 8126]
gi|347005489|gb|AEO71887.1| hypothetical protein THITE_2156915 [Thielavia terrestris NRRL 8126]
Length = 828
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 50 AKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYK 109
++D+ A + L+P ++RP+W+A +G + LE+F P+ HA D L+AIAEP+ RP +HEY+
Sbjct: 79 SRDFTA-LALEPGQQTRPVWIAGSGSLILEAFHPLAAHARDLLVAIAEPMSRPALVHEYR 137
Query: 110 LTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
LT +SLYAAV+ GL DII L+R K VP + FI C SYGKVKLVL+ RY++
Sbjct: 138 LTVHSLYAAVAAGLTPGDIIAALQRWCKNKVPPNVARFIQQCGKSYGKVKLVLRKARYWL 197
Query: 170 ESPFAEVLQKLLKDPVIQDCRLRRDTE 196
E+ VL+ LL+DP I CR T+
Sbjct: 198 ETADPAVLRVLLQDPEIARCRADHGTQ 224
>gi|407925762|gb|EKG18743.1| Xeroderma pigmentosum group B protein (XP-B) [Macrophomina
phaseolina MS6]
Length = 763
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 107
F DY + + LK +H RPLWV P G I LESFSP ++ A FLI IAEP R +HE
Sbjct: 27 FQGNDY-SSLDLKKEHADRPLWVTPEGKIILESFSPYFKTAERFLINIAEPQSRVSLMHE 85
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y LTA SL+AAVSVGL T++II L++LSKT + D + EFI T S+GKV+LVLK +Y
Sbjct: 86 YSLTANSLFAAVSVGLSTNEIIGQLEKLSKTPLDDEVKEFIINSTKSFGKVRLVLKQTKY 145
Query: 168 FIESPFAEVLQKLLKDPVIQDCRL 191
FIES ++L+ LL+D +I CR+
Sbjct: 146 FIESSDPDILRTLLRDSIIGPCRV 169
>gi|451853872|gb|EMD67165.1| hypothetical protein COCSADRAFT_285430 [Cochliobolus sativus
ND90Pr]
gi|451999787|gb|EMD92249.1| hypothetical protein COCHEDRAFT_1224108 [Cochliobolus
heterostrophus C5]
Length = 804
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 119/206 (57%), Gaps = 13/206 (6%)
Query: 10 VEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 69
+ D+ D E D + A+ +D AA D F D + LK DH +RPLW
Sbjct: 28 MSDQETFDQLKEEFDVKAMTKRARAGRVRDAAA---DLFRKSD-QWSAPLKSDHYNRPLW 83
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
V G I LESF P++ A DFLI IAEP R +HEY+LT +SL+AAVSVG +II
Sbjct: 84 VNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAAVSVGHSKQEII 143
Query: 130 EYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
E L R SKT++ + I++F+ T ++GK K+VLK +IES +LQKLL+DPV+ +C
Sbjct: 144 EKLDRYSKTALSEAIIQFVEKSTSAFGKAKIVLKKTLSYIESEDPAILQKLLRDPVVAEC 203
Query: 190 RLRRDTEDSQTLINQADKKLKAPQFG 215
R DT D LI +A AP+ G
Sbjct: 204 RA--DTTDG--LIKEA-----APKIG 220
>gi|392513052|emb|CAD24977.2| DNA REPAIR HELICASE RAD25 [Encephalitozoon cuniculi GB-M1]
Length = 672
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 92/133 (69%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK D +S P+WV +G I LE+F R A DFLIAIAEP+ RP IHE+++TAYSL
Sbjct: 19 ELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLQIHEFQITAYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DIIE L R SK +P + FI CTLSYGKVKLV+K + +F+E+
Sbjct: 79 YAAVSVGLTTSDIIETLDRFSKNFLPRSVRVFITECTLSYGKVKLVMKESSFFLETANES 138
Query: 176 VLQKLLKDPVIQD 188
V + L D VI+
Sbjct: 139 VYKMLSSDAVIRS 151
>gi|401825205|ref|XP_003886698.1| Rad25-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
gi|337263116|gb|AEI69269.1| DNA repair helicase Rad25 [Encephalitozoon hellem]
gi|395459843|gb|AFM97717.1| Rad25-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
Length = 672
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 93/132 (70%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK + +S P+WV +G I LE+F R A DFLIAIAEP+ RP IHE+++TAYSL
Sbjct: 19 ELVLKENSESYPMWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLKIHEFQITAYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DIIE L R SK +P + FI CTLSYGKVKLV+K N +F+E+
Sbjct: 79 YAAVSVGLTTGDIIETLDRFSKNHLPRSVKVFITECTLSYGKVKLVMKENSFFLEAANES 138
Query: 176 VLQKLLKDPVIQ 187
V + L +D VI+
Sbjct: 139 VYKMLSEDAVIR 150
>gi|85691085|ref|XP_965942.1| DNA repair helicase [Encephalitozoon cuniculi GB-M1]
gi|74697619|sp|Q8SSK1.1|RAD25_ENCCU RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
Length = 696
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 92/133 (69%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK D +S P+WV +G I LE+F R A DFLIAIAEP+ RP IHE+++TAYSL
Sbjct: 43 ELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLQIHEFQITAYSL 102
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DIIE L R SK +P + FI CTLSYGKVKLV+K + +F+E+
Sbjct: 103 YAAVSVGLTTSDIIETLDRFSKNFLPRSVRVFITECTLSYGKVKLVMKESSFFLETANES 162
Query: 176 VLQKLLKDPVIQD 188
V + L D VI+
Sbjct: 163 VYKMLSSDAVIRS 175
>gi|449329742|gb|AGE96011.1| DNA repair helicase rad25 [Encephalitozoon cuniculi]
Length = 696
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 91/133 (68%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK D +S P+WV +G I LE+F R A DFLIAIAEP+ RP IHE+++TAYSL
Sbjct: 43 ELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLQIHEFQITAYSL 102
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DIIE L R SK +P + FI CTLSYGKVKLV+K +F+E+
Sbjct: 103 YAAVSVGLTTSDIIETLDRFSKNFLPRSVRVFITECTLSYGKVKLVMKEGSFFLETANES 162
Query: 176 VLQKLLKDPVIQD 188
V + L D VI+
Sbjct: 163 VYKMLSSDTVIRS 175
>gi|403365939|gb|EJY82760.1| hypothetical protein OXYTRI_19624 [Oxytricha trifallax]
Length = 808
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY Q+ LK DH+ RP+W+ PN ++LESFSP+Y+ A +F+IAIAEPV RP +IHEY L
Sbjct: 38 QDYTQQIKLKEDHEKRPIWIGPNFKLYLESFSPLYKAATEFMIAIAEPVSRPTYIHEYVL 97
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTS-VPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
TAYSLYAA+SV L DI E L RLSK + +P + FI + YGK KLVLK N+YFI
Sbjct: 98 TAYSLYAAMSVNLTKDDIFEVLDRLSKNAEIPPDVKGFIEQYSSRYGKAKLVLKSNKYFI 157
Query: 170 ESPFAEVLQKLL 181
E+ V + LL
Sbjct: 158 ETNDKNVRRNLL 169
>gi|300707502|ref|XP_002995956.1| hypothetical protein NCER_101030 [Nosema ceranae BRL01]
gi|263505385|sp|C4V922.1|RAD25_NOSCE RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|239605203|gb|EEQ82285.1| hypothetical protein NCER_101030 [Nosema ceranae BRL01]
Length = 659
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 69/132 (52%), Positives = 96/132 (72%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
+++LK DH++ LW+ + I LE+F + A DFLIAIAEPV RP++IHEY++TAYSL
Sbjct: 19 EIILKDDHENFSLWINYDALIILETFKQNSKQASDFLIAIAEPVSRPKYIHEYQITAYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DI+ L SK +P + FI CTLSYGK+KLV++ N+YFIE+ +
Sbjct: 79 YAAVSVGLSTDDILSTLSYFSKNIMPRSVKNFIVECTLSYGKIKLVIQFNKYFIEAANND 138
Query: 176 VLQKLLKDPVIQ 187
+L+KL+ D +I+
Sbjct: 139 ILKKLIDDKIIR 150
>gi|303388169|ref|XP_003072319.1| DNA repair helicase Rad25 [Encephalitozoon intestinalis ATCC 50506]
gi|303301458|gb|ADM10959.1| DNA repair helicase Rad25 [Encephalitozoon intestinalis ATCC 50506]
Length = 672
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 99/154 (64%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK D+ P+WV +G I LE F R A DFLIAIAEPV RP IHE+++TAYSL
Sbjct: 19 ELVLKEDNDGFPMWVNYDGLIILEMFRESSRQACDFLIAIAEPVSRPLKIHEFQITAYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DII+ L R SK +P + FI CTLSYGKVKL+LK N +F+E+
Sbjct: 79 YAAVSVGLTTDDIIKTLDRFSKNYLPRSVKVFITECTLSYGKVKLILKENSFFLEAANES 138
Query: 176 VLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
V + L +D VI+ + + E S I D +L
Sbjct: 139 VYKMLSEDTVIRSHTVCKPKEGSGLSIEVEDVEL 172
>gi|330948023|ref|XP_003307038.1| hypothetical protein PTT_20359 [Pyrenophora teres f. teres 0-1]
gi|311315156|gb|EFQ84865.1| hypothetical protein PTT_20359 [Pyrenophora teres f. teres 0-1]
Length = 803
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 117/206 (56%), Gaps = 13/206 (6%)
Query: 10 VEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 69
+ D+ D E D + A+ +D AA D F D + LKPDH +RPLW
Sbjct: 27 MSDQDTFDQLKEEFDVKAMTKRARAGRIRDAAA---DLFRKSD-QWSAPLKPDHFNRPLW 82
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
V G I LESF P++ A DFLI IAEP R +HEY+LT +SL+AAVSVG +II
Sbjct: 83 VNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAAVSVGHSKEEII 142
Query: 130 EYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
+ L R SKT++ IV+F+ T ++GK K+VLK +IES +LQKLL+DP++ C
Sbjct: 143 DKLDRYSKTTLSAAIVQFVEKSTSAFGKAKIVLKKTLSYIESEDPAILQKLLRDPIVAGC 202
Query: 190 RLRRDTEDSQTLINQADKKLKAPQFG 215
R + + LI +A AP+ G
Sbjct: 203 R----ADATDGLIKEA-----APKIG 219
>gi|189210050|ref|XP_001941357.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187977450|gb|EDU44076.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 803
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 13/206 (6%)
Query: 10 VEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 69
+ D+ D E D + A+ +D AA D F D + LKPDH +RPLW
Sbjct: 27 MSDQDTFDQLKEEFDVKAMTKRARAGRVRDAAA---DLFRKSD-QWSAPLKPDHFNRPLW 82
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
V G I LESF P++ A DFLI IAEP R +HEY+LT +SL+AAVSVG +II
Sbjct: 83 VNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAAVSVGHSKEEII 142
Query: 130 EYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
+ L R SKT++ I++F+ T ++GK K+VLK +IES +LQKLL+DP++ C
Sbjct: 143 DKLDRYSKTALSAAIIQFVEKSTSAFGKAKIVLKKTLSYIESEDPAILQKLLRDPIVAGC 202
Query: 190 RLRRDTEDSQTLINQADKKLKAPQFG 215
R + + LI +A AP+ G
Sbjct: 203 R----ADATDGLIKEA-----APKIG 219
>gi|290983477|ref|XP_002674455.1| predicted protein [Naegleria gruberi]
gi|284088045|gb|EFC41711.1| predicted protein [Naegleria gruberi]
Length = 818
Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 4/190 (2%)
Query: 1 KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
+K ++K+++ E +S E+ K EK + + + G + + M LK
Sbjct: 23 EKNEKKRRKSETKSKNKKTKYDNIENDTDSQISKQAEKLATDIFKQKEGIQFDHSSMDLK 82
Query: 61 PDHKSRPLWVAP--NG--HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
DH+SRP+WV NG HIF+E+ +PVY+ A+DFL+AIAEP+ R E++HEY+L +SLY
Sbjct: 83 SDHESRPIWVCSGDNGDYHIFMETNTPVYQQAYDFLVAIAEPISRMENLHEYQLKEFSLY 142
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AVS+GL II+ L +LSK +P +++FI T YG VK VL+ NR+F+ESP ++
Sbjct: 143 GAVSIGLTCDYIIQVLDKLSKVKLPTDLIDFIRKTTSKYGSVKFVLQKNRFFLESPILQI 202
Query: 177 LQKLLKDPVI 186
++KL D VI
Sbjct: 203 IEKLRNDSVI 212
>gi|323452822|gb|EGB08695.1| hypothetical protein AURANDRAFT_521, partial [Aureococcus
anophagefferens]
Length = 634
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 92/132 (69%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPDH +RPLW P+G IFLE+ S +Y A+DFL+AIAEPV RPEH+HEY+LT YSLYAA
Sbjct: 7 LKPDHANRPLWACPDGSIFLEARSALYGPAYDFLVAIAEPVARPEHVHEYRLTPYSLYAA 66
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSV + I + L +LSK +P I ++ CT ++G+ KLVL+ NR+ +ES A L+
Sbjct: 67 VSVDIAPASICDVLDKLSKVKLPARIRAYVMDCTKNFGRAKLVLRGNRHHVESSDAAALR 126
Query: 179 KLLKDPVIQDCR 190
LL+ I+ R
Sbjct: 127 TLLEHAGIRGAR 138
>gi|74690569|sp|Q6E6J3.1|RAD25_ANTLO RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|47156900|gb|AAT12293.1| DNA repair helicase RAD25 [Antonospora locustae]
Length = 687
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 74/154 (48%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
+ EF ++ R +K +H PL V+ NG I LE+F+ + A DFLIAIAEPV RP H
Sbjct: 27 QHEFEPEEIR----MKQEHTECPLLVSHNGIIILETFTANAKQATDFLIAIAEPVSRPAH 82
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY++T YSLYAAVSVGL T DI+ L R +K +VPD IV F+ CTLSYGK +LV K
Sbjct: 83 VHEYRITPYSLYAAVSVGLTTEDILSTLDRFAKNTVPDTIVRFVRECTLSYGKTRLVFKG 142
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
R+ +E+ EV L D I R D+
Sbjct: 143 GRFLVEAATREVFDVLTGDAEISRLRAAGTVRDA 176
>gi|429327267|gb|AFZ79027.1| rad25/xp-B DNA repair helicase, putative [Babesia equi]
Length = 779
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 101/141 (71%), Gaps = 1/141 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY +++V+K H++RP+WV P+G+++LE F+PV + A DFL+ IAEPVCRPE IHEY++
Sbjct: 30 RDY-SKLVIKESHQNRPVWVCPDGYLYLELFTPVSKQALDFLVTIAEPVCRPELIHEYQV 88
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLY A+SVGL +++ L + SK VP+ + E I S+GK+KLVLK ++Y+IE
Sbjct: 89 TVFSLYTAISVGLSFDELLSNLNKFSKNIVPEELKESILSTASSFGKIKLVLKDSKYWIE 148
Query: 171 SPFAEVLQKLLKDPVIQDCRL 191
S + L LL +P I+ R+
Sbjct: 149 SFERKELDLLLTNPEIRSARI 169
>gi|337263086|gb|AEI69254.1| DNA repair helicase [Encephalitozoon romaleae]
gi|396080809|gb|AFN82430.1| DNA repair helicase Rad25 [Encephalitozoon romaleae SJ-2008]
Length = 672
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 91/133 (68%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK + P+WV +G I LE+F R A DFLIAIAEP+ RP +HE+++TAYSL
Sbjct: 19 EVVLKEKSERYPMWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLRVHEFQITAYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DIIE L R SK +P + FI CTLSYGKVKLV+K N +F+E+
Sbjct: 79 YAAVSVGLTTGDIIETLDRFSKNHLPRSVKVFITECTLSYGKVKLVMKENSFFLEAANES 138
Query: 176 VLQKLLKDPVIQD 188
V + L +D VI+
Sbjct: 139 VYKILSEDTVIRS 151
>gi|156089441|ref|XP_001612127.1| DNA repair helicase rad25 family protein [Babesia bovis]
gi|154799381|gb|EDO08559.1| DNA repair helicase rad25 family protein [Babesia bovis]
Length = 770
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY + LK DH++RP+WV P+G+++L+ + R A DFL IAEP+CRPE++HEY++
Sbjct: 29 RDY-TDIKLKKDHENRPMWVCPDGYLYLDISAKASRQAQDFLTTIAEPICRPEYLHEYQI 87
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLY AVSVGL +++ L + SK +P + + I ++GK+KLVL+ NRY+IE
Sbjct: 88 TVFSLYTAVSVGLTVEELLTNLNKFSKNEIPKKVKDSIVTTASAFGKIKLVLRDNRYWIE 147
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDT 195
S + L LL +PVI+ R+ +T
Sbjct: 148 SHDKKELDHLLTNPVIRSARIVPNT 172
>gi|169616097|ref|XP_001801464.1| hypothetical protein SNOG_11221 [Phaeosphaeria nodorum SN15]
gi|111060600|gb|EAT81720.1| hypothetical protein SNOG_11221 [Phaeosphaeria nodorum SN15]
Length = 804
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 116/206 (56%), Gaps = 13/206 (6%)
Query: 10 VEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 69
+ D+ D+ E D + A+ +KD A D F D + LKPDH +RPLW
Sbjct: 29 MSDQDTFDNLKEEFDVKAMTKRARATQKKDAAG---DLFRKSD-QWNAHLKPDHYNRPLW 84
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
V G I LESF ++ A DFLI IAEP R +HEY+LT +SL+AAVSVG + +II
Sbjct: 85 VNDAGGIILESFHALFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAAVSVGHSSKEII 144
Query: 130 EYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
+ L SKT + IV F+ T ++GK K+VLK +IES +L++LL DP++ +C
Sbjct: 145 DKLDMYSKTDLSAAIVHFVEKSTSAFGKAKIVLKKTLSYIESEDPSILKRLLADPIVAEC 204
Query: 190 RLRRDTEDSQTLINQADKKLKAPQFG 215
R DT D LI +A AP+ G
Sbjct: 205 RA--DTTDG--LIKEA-----APKIG 221
>gi|403221729|dbj|BAM39861.1| DNA repair helicase [Theileria orientalis strain Shintoku]
Length = 771
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/161 (44%), Positives = 108/161 (67%), Gaps = 9/161 (5%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY +++ LK +H +RPLWV P+G+I+LE F+PV + A DF++ IAEPVCRPE IHEY++
Sbjct: 30 RDY-SKLRLKDNHLTRPLWVCPDGYIYLELFTPVSKQALDFIVTIAEPVCRPELIHEYQV 88
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLY AVSVGL +++ L + SK +P + + I S+GK+KLVL+ NRY+IE
Sbjct: 89 TVFSLYTAVSVGLTIDELLNNLNKFSKNVLPPKLKDAILNTASSFGKIKLVLRDNRYWIE 148
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRD--------TEDSQTLIN 203
S + L LL + I++ R+ + TE+SQ+ +N
Sbjct: 149 SFERKELDFLLTNQEIRNSRIHSNIWGSSSQMTENSQSGLN 189
>gi|399216282|emb|CCF72970.1| unnamed protein product [Babesia microti strain RI]
Length = 750
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 4/164 (2%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G +DY + LKP+H+ RP+WV P+G++ LE F+ V + A D + IAEP+CRP+ +HEY
Sbjct: 22 GFRDY-SNFELKPNHRDRPVWVCPDGYLILEMFTNVSKQALDLISTIAEPICRPDLLHEY 80
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
++T +SLYAAVSVGL D+I L + SK P + + I S+G+VKLVL+ N+Y+
Sbjct: 81 QITVFSLYAAVSVGLLADDLIRNLDKFSKNIFPKALEQLIIRAAKSFGQVKLVLRDNKYY 140
Query: 169 IESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQA---DKKL 209
IES L LL++ I+ R+ D S++ N+ D KL
Sbjct: 141 IESKDKSELDYLLRNEKIRSARIMSDLWTSESFGNEGKFEDSKL 184
>gi|401408975|ref|XP_003883936.1| hypothetical protein NCLIV_036860 [Neospora caninum Liverpool]
gi|325118353|emb|CBZ53904.1| hypothetical protein NCLIV_036860 [Neospora caninum Liverpool]
Length = 968
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 95/139 (68%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G +DY +++ LK DH RPLWV +G I LE+FS R A++ L+ +AEP+CR + +HE+
Sbjct: 102 GFRDYGSKLSLKADHAHRPLWVCQDGSILLETFSAASRQANELLLTMAEPICRGDFVHEF 161
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
++T +SLYA +S+GL D+I L++ SK ++P+ +V I ++GKVKLVL N+Y+
Sbjct: 162 QITIFSLYAGISIGLSCEDMILNLEKFSKNAIPEDLVVQIQKVASAFGKVKLVLNENKYY 221
Query: 169 IESPFAEVLQKLLKDPVIQ 187
IES + L LL +P+I+
Sbjct: 222 IESAEKKELDYLLSNPLIR 240
>gi|221508622|gb|EEE34191.1| helicase, putative [Toxoplasma gondii VEG]
Length = 997
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 95/139 (68%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G +D+ +++ LK DH RPLWV P+G I LE+FS R A + L+ +AEP+CR + +HE+
Sbjct: 122 GFRDFGSKLALKVDHAHRPLWVCPDGTILLETFSAANRQATELLLTMAEPICRGDFVHEF 181
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
++T +SLYA +S+GL D++ L++ SK ++P+ +V I ++GKVKLVL N+Y+
Sbjct: 182 QITIFSLYAGISIGLSCEDMLLNLEKFSKNAIPEDLVVQIQKVASAFGKVKLVLNENKYY 241
Query: 169 IESPFAEVLQKLLKDPVIQ 187
IES + L LL +P+I+
Sbjct: 242 IESAEKKELDYLLSNPLIR 260
>gi|221488103|gb|EEE26317.1| helicase, putative [Toxoplasma gondii GT1]
Length = 997
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 95/139 (68%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G +D+ +++ LK DH RPLWV P+G I LE+FS R A + L+ +AEP+CR + +HE+
Sbjct: 122 GFRDFGSKLALKVDHAHRPLWVCPDGTILLETFSAANRQATELLLTMAEPICRGDFVHEF 181
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
++T +SLYA +S+GL D++ L++ SK ++P+ +V I ++GKVKLVL N+Y+
Sbjct: 182 QITIFSLYAGISIGLSCEDMLLNLEKFSKNAIPEDLVVQIQKVASAFGKVKLVLNENKYY 241
Query: 169 IESPFAEVLQKLLKDPVIQ 187
IES + L LL +P+I+
Sbjct: 242 IESAEKKELDYLLSNPLIR 260
>gi|84995690|ref|XP_952567.1| DNA repair helicase [Theileria annulata strain Ankara]
gi|65302728|emb|CAI74835.1| DNA repair helicase, putative [Theileria annulata]
Length = 770
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY + + LK +H +RPLWV P+G+++LE F+PV + A DF++ IAEPVCRPE IHEY++
Sbjct: 30 RDY-SNLKLKTNHTARPLWVCPDGYLYLELFTPVSKQALDFIVTIAEPVCRPELIHEYQV 88
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLY AVSVGL +++ L + SK +P + E I + ++GK+KLVL+ +RY+IE
Sbjct: 89 TVFSLYTAVSVGLSFEELLNNLNKFSKNELPKKLKESILNTSSAFGKIKLVLRDSRYWIE 148
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDSQ 199
S L LL + I++ R+ + D Q
Sbjct: 149 SFERSELDLLLTNQEIKNSRIHSNIWDKQ 177
>gi|221054291|ref|XP_002261893.1| helicase [Plasmodium knowlesi strain H]
gi|193808353|emb|CAQ39057.1| helicase, putative [Plasmodium knowlesi strain H]
Length = 888
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY M LK +H ++P+W+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 86 GFHDYSKDMKLKKNHMNKPMWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 145
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +PD +V I S+GK KLVL+ N+Y+
Sbjct: 146 QLTIFSLYAAISVGVTLDELLVNLDKFSKNFLPDELVHNITKSAESFGKAKLVLRENKYY 205
Query: 169 IESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLK 210
IE+ L LL++ +I++ RL N +D+K+K
Sbjct: 206 IEATNKSELDYLLRNSIIKNARLYSSE-------NNSDQKIK 240
>gi|156081817|ref|XP_001608401.1| DNA repair helicase [Plasmodium vivax Sal-1]
gi|148800972|gb|EDL42377.1| DNA repair helicase, putative [Plasmodium vivax]
Length = 900
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 96/143 (67%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 88 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 147
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P+ +V+ I S+GK KLVL+ N+Y+
Sbjct: 148 QLTIFSLYAAISVGITLDELLVNLDKFSKNFLPNELVQNITKSAESFGKAKLVLRENKYY 207
Query: 169 IESPFAEVLQKLLKDPVIQDCRL 191
IE+ L LLK+ +I++ RL
Sbjct: 208 IEATNKSELDYLLKNSIIKNARL 230
>gi|302836588|ref|XP_002949854.1| hypothetical protein VOLCADRAFT_90307 [Volvox carteri f.
nagariensis]
gi|300264763|gb|EFJ48957.1| hypothetical protein VOLCADRAFT_90307 [Volvox carteri f.
nagariensis]
Length = 1119
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 22/137 (16%)
Query: 75 HIFLESFSPVYRH-------------------AHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
IFLE+FSP+Y+ A+DFLIAI+EPVCRPE +HEY+LT +SL
Sbjct: 370 RIFLETFSPIYKQVKGGKEGLKGVEHRRGLGLAYDFLIAISEPVCRPEAMHEYQLTPHSL 429
Query: 116 YAAVSVGLETHDIIEYLKR---LSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESP 172
YAAVSVGLET II L R LSK + + FI T +YGKVKLVLKHNR+++ES
Sbjct: 430 YAAVSVGLETETIINVLNRLVGLSKVQLSEETKSFIRDSTANYGKVKLVLKHNRFYVEST 489
Query: 173 FAEVLQKLLKDPVIQDC 189
EVL++LLKD VIQ+
Sbjct: 490 HPEVLKRLLKDKVIQEA 506
>gi|389582844|dbj|GAB65581.1| DNA repair helicase [Plasmodium cynomolgi strain B]
Length = 792
Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 7/162 (4%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 86 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 145
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P+ +V I S+GK KLVL+ N+Y+
Sbjct: 146 QLTIFSLYAAISVGVTLDELLVNLDKFSKNFLPNELVHNITKSAESFGKAKLVLRENKYY 205
Query: 169 IESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLK 210
IE+ L LLK+ +I++ RL N +D K+K
Sbjct: 206 IEATNKSELDYLLKNSIIKNARLYSSD-------NNSDHKIK 240
>gi|429962851|gb|ELA42395.1| DNA repair helicase rad25 [Vittaforma corneae ATCC 50505]
Length = 659
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 90/132 (68%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++V+K + P+WV + I LE F P + A DFLIAI+EPV RP +HEY++TAYSL
Sbjct: 19 ELVMKENCDELPIWVNYDALIVLEVFRPTSKIAIDFLIAISEPVSRPAKMHEYQITAYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAA SVGL T I+E L + SK +P I FI CTLSYGK++L+ H ++FIE+ E
Sbjct: 79 YAAASVGLTTDYILETLNKFSKNYLPKSIRSFITDCTLSYGKIRLIRAHTKFFIEAISKE 138
Query: 176 VLQKLLKDPVIQ 187
+L+ LLKD V++
Sbjct: 139 ILELLLKDNVLR 150
>gi|124802985|ref|XP_001347653.1| DNA repair helicase rad25, putative [Plasmodium falciparum 3D7]
gi|23495236|gb|AAN35566.1| DNA repair helicase rad25, putative [Plasmodium falciparum 3D7]
Length = 886
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 92 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 151
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P+ ++ I S+GKVKLVL+ N+Y+
Sbjct: 152 QLTIFSLYAAISVGITLDELLINLDKFSKNVLPNELISNITKSAESFGKVKLVLRENKYY 211
Query: 169 IESPFAEVLQKLLKDPVIQDCRL-RRDTEDSQTLIN 203
IE+ L LL + IQ+ R+ D + + +I+
Sbjct: 212 IEATNKSELDYLLNNDTIQNARIYSTDNNNDKNMIS 247
>gi|237832699|ref|XP_002365647.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
gi|211963311|gb|EEA98506.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
Length = 997
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/153 (41%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G +D+ +++ LK DH RPLWV P+G I LE+FS R A + L+ +AEP+CR + +HE+
Sbjct: 122 GFRDFGSKLALKVDHAHRPLWVCPDGTILLETFSAANRQATELLLTMAEPICRGDFVHEF 181
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
++T +SLYA +S+GL D++ L++ SK ++P+ +V I ++GKVKLVL N+Y+
Sbjct: 182 QITIFSLYAGISIGLSCEDMLLNLEKFSKNAIPEDLVVQIQKVASAFGKVKLVLNENKYY 241
Query: 169 IESPFAEVLQKLLKDPVIQDCRL-RRDTEDSQT 200
IES + L LL +P+I+ + R E +QT
Sbjct: 242 IESAEKKELDYLLSNPLIRSSAVAHRRPELAQT 274
>gi|71030142|ref|XP_764713.1| DNA helicase [Theileria parva strain Muguga]
gi|68351669|gb|EAN32430.1| DNA helicase, putative [Theileria parva]
Length = 770
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY + + LK +H +RPLWV P+G+++LE F+PV + A DF++ IAEPVCRPE IHEY++
Sbjct: 30 RDY-SNLKLKNNHSARPLWVCPDGYLYLELFTPVSKQALDFIVTIAEPVCRPELIHEYQV 88
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLY AVSVGL +++ L + SK +P + E I + ++GK+KLVL+ +RY+IE
Sbjct: 89 TVFSLYTAVSVGLSFEELLNNLNKFSKNELPKKLKESILNTSSAFGKIKLVLRDSRYWIE 148
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
S L LL + I++ R+ + D+
Sbjct: 149 SFERSELDLLLTNQEIRNSRIHSNIWDN 176
>gi|209876984|ref|XP_002139934.1| DNA repair helicase rad25 family protein [Cryptosporidium muris
RN66]
gi|209555540|gb|EEA05585.1| DNA repair helicase rad25 family protein [Cryptosporidium muris
RN66]
Length = 815
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 3/161 (1%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY A + LK DH SRPLWV P+G I +E+F A +FL +AEP+ RPE IHEY++
Sbjct: 43 RDYSASLNLKLDHASRPLWVFPDGLIIVETFHVSSSAACEFLSTVAEPLSRPELIHEYQM 102
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLYAAVS+G+ + IIE L + SK VPD +V+ I S+GK+K+VL+ RYF+E
Sbjct: 103 TIFSLYAAVSLGISVNSIIETLNKFSKNEVPDVLVKAIISHCKSFGKLKIVLRDGRYFVE 162
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKA 211
+ E L LL D I +L R + +N +K L+
Sbjct: 163 ASNREELSYLLSDERI---KLSRVYSGTSFQLNSGEKSLQG 200
>gi|66359840|ref|XP_627098.1| RAD25, helicase involved in DNA repair [Cryptosporidium parvum Iowa
II]
gi|46228526|gb|EAK89396.1| RAD25, helicase involved in DNA repair [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 94/148 (63%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY +++ LK DH RP+WV P+G I +E+F + A +FL+ I+EP+ RPE IHEY+L
Sbjct: 39 RDYSSELKLKSDHDKRPIWVFPDGLIIIETFHQSSKAACEFLVTISEPLSRPELIHEYQL 98
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLYAAVS+G+ IIE L + SK +PD +V I +GK+K+VL RYF+E
Sbjct: 99 TIFSLYAAVSLGITVDSIIETLGKFSKNEIPDTLVNTIRGHCKLFGKLKIVLLEGRYFVE 158
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
+ + L LL D I+ R+ R +S
Sbjct: 159 ATSRQELSYLLSDERIKSARIIRKVNNS 186
>gi|67588048|ref|XP_665323.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54655954|gb|EAL35093.1| hypothetical protein Chro.80227, partial [Cryptosporidium hominis]
Length = 751
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 94/148 (63%)
Query: 51 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
+DY +++ LK DH RP+WV P+G I +E+F + A +FL+ I+EP+ RPE IHEY+L
Sbjct: 39 RDYSSELKLKSDHDKRPIWVFPDGLIIIETFHQSSKAACEFLVTISEPLSRPELIHEYQL 98
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
T +SLYAAVS+G+ IIE L + SK +PD +V I +GK+K+VL RYF+E
Sbjct: 99 TIFSLYAAVSLGITVDSIIETLGKFSKNEIPDTLVNTIRGHCKLFGKLKIVLLEGRYFVE 158
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
+ + L LL D I+ R+ R +S
Sbjct: 159 ATSRQELSYLLSDERIKSARIIRKVNNS 186
>gi|70953432|ref|XP_745818.1| helicase [Plasmodium chabaudi chabaudi]
gi|56526257|emb|CAH77830.1| helicase, putative [Plasmodium chabaudi chabaudi]
Length = 872
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/170 (42%), Positives = 104/170 (61%), Gaps = 7/170 (4%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY +M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 88 GFHDYSKEMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPEIIHEF 147
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P +V I S+GKVKLVL+ N+Y+
Sbjct: 148 QLTIFSLYAAISVGITLDELLLNLDKFSKNVLPSELVYSITKSAESFGKVKLVLRENKYY 207
Query: 169 IESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYS 218
IE+ L LL + +I++ R+ T +N D K K F L S
Sbjct: 208 IEAKDKFELDYLLNNNIIKNARV------YSTDVNNNDSK-KNSMFNLNS 250
>gi|82539946|ref|XP_724324.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478932|gb|EAA15889.1| RepB-related [Plasmodium yoelii yoelii]
Length = 870
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 95/143 (66%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY +M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 87 GFHDYSKEMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPEIIHEF 146
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P +V I S+GKVKLVL+ N+Y+
Sbjct: 147 QLTIFSLYAAISVGITLDELLLNLDKFSKNILPSELVYSITKSAESFGKVKLVLRENKYY 206
Query: 169 IESPFAEVLQKLLKDPVIQDCRL 191
IE+ L LL + +I++ R+
Sbjct: 207 IEAKDKFELDYLLNNNIIKNARV 229
>gi|68070877|ref|XP_677352.1| helicase [Plasmodium berghei strain ANKA]
gi|56497437|emb|CAI00041.1| helicase, putative [Plasmodium berghei]
Length = 876
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 95/143 (66%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY +M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 88 GFHDYSKEMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPEIIHEF 147
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P +V I S+GKVKLVL+ N+Y+
Sbjct: 148 QLTIFSLYAAISVGITLDELLLNLDKFSKNILPSELVYSIKKSAESFGKVKLVLRENKYY 207
Query: 169 IESPFAEVLQKLLKDPVIQDCRL 191
IE+ L LL + +I++ R+
Sbjct: 208 IEAKDKFELDYLLNNNIIKNARV 230
>gi|302788834|ref|XP_002976186.1| hypothetical protein SELMODRAFT_416209 [Selaginella moellendorffii]
gi|300156462|gb|EFJ23091.1| hypothetical protein SELMODRAFT_416209 [Selaginella moellendorffii]
Length = 137
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 80/107 (74%)
Query: 55 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYS 114
+++ LKPDHK RPLWV P+GHIFL++FSP+++ A+ FLI AEPVC+PEH+HEY LT +
Sbjct: 31 SKLELKPDHKKRPLWVGPDGHIFLKTFSPLHKQAYGFLIVTAEPVCQPEHMHEYNLTPHP 90
Query: 115 LYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
LY AVS+GLET +I ++ LSK + IV FI TL+YGK L+
Sbjct: 91 LYPAVSIGLETQIVITVMEWLSKARLRQKIVNFIKESTLNYGKNLLI 137
>gi|294955554|ref|XP_002788563.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239904104|gb|EER20359.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 804
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 10/149 (6%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLES------FSPVYRHAHDFLIAIAEPVCRP 102
G D +M LKPDH+ RPLWV P+G I E+ F PV DFL+AIAEP+ RP
Sbjct: 112 GLMDLSGRMKLKPDHRDRPLWVCPDGRIIFEAGLHPDLFGPV----TDFLVAIAEPISRP 167
Query: 103 EHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVL 162
+H +++T +SLYAA+S+G+ ++I L R SK + ++++I GKV+LVL
Sbjct: 168 SWVHHFQITVFSLYAAISLGMSVEEVIADLDRFSKNEIDPVLLDYIQQSGSRIGKVRLVL 227
Query: 163 KHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
+ NRYF+ES +L+ + + I+ C+L
Sbjct: 228 RRNRYFVESSDLSLLRMIEDNSKIRKCKL 256
>gi|402466417|gb|EJW01911.1| DNA repair helicase rad25, partial [Edhazardia aedis USNM 41457]
Length = 670
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 65/133 (48%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
+VLK + P + + I LE+F P++ A DFLIAIAEP+ RPEHIHEYKLT+YSLY
Sbjct: 24 IVLKANPADFPFSINFDTLIILETFHPLFPQATDFLIAIAEPISRPEHIHEYKLTSYSLY 83
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF--IESPFA 174
AAV VGL T +I++ L SK +P +VEFI CT + GK+++++K N+Y+ IE+
Sbjct: 84 AAVCVGLATEEILQGLNYFSKNQIPHTVVEFIKKCTENCGKMRILVKCNKYYLIIENMSD 143
Query: 175 EVLQKLLKDPVIQ 187
E K+L DP+I+
Sbjct: 144 ESKAKVLDDPIIK 156
>gi|300123236|emb|CBK24509.2| unnamed protein product [Blastocystis hominis]
Length = 748
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/111 (54%), Positives = 78/111 (70%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKP+H+ +PLWV PN HIFL++ S Y A DFL AIAEP+ RP+ IHEY +T SLY A
Sbjct: 18 LKPNHEKKPLWVCPNFHIFLDTSSRYYEQATDFLTAIAEPLSRPQFIHEYIITDSSLYGA 77
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
VS+GLET II L+ LSK + ++ I T ++GKVKLVL++NRY I
Sbjct: 78 VSIGLETEAIIRKLESLSKVRLTTDMINHIRRKTETFGKVKLVLRNNRYRI 128
>gi|294940084|ref|XP_002782670.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
gi|239894522|gb|EER14465.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
Length = 796
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 16/170 (9%)
Query: 52 DYRAQMVLKPDHKSRPLWVAPNGHIFLES------FSPVYRHAHDFLIAIAEPVCRPEHI 105
D +M LKPDH+ RPLWV P+G I E+ F PV DFL+AIAEP+ RP +
Sbjct: 67 DLSGRMKLKPDHRDRPLWVCPDGRIIFEAGLHPDLFGPV----TDFLVAIAEPISRPSWV 122
Query: 106 HEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
H +++T +SLYAA+S+G+ ++I L R SK + ++++I GKV+LVL+ N
Sbjct: 123 HHFQITVFSLYAAISLGMSVEEVIADLDRFSKNEIDPVLLDYIQQSGSRIGKVRLVLRRN 182
Query: 166 RYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
RYF+ES +L+ + + I+ C+L Q + ++ + P+ G
Sbjct: 183 RYFVESSDLSLLRMIEDNSKIRKCKL------GQIISSKCWSGWEGPRLG 226
>gi|6478859|dbj|BAA87292.1| Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 188
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 71/90 (78%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
P IHEY++TAYSLYAAVSVGL+T DII L RLSKT +P IV+FI CT+SYGKVKLV
Sbjct: 1 PAFIHEYRITAYSLYAAVSVGLKTEDIIAVLDRLSKTPIPPSIVDFIRACTVSYGKVKLV 60
Query: 162 LKHNRYFIESPFAEVLQKLLKDPVIQDCRL 191
LK NRYFIES A VL+ LL+DPVI R+
Sbjct: 61 LKKNRYFIESGDASVLRLLLRDPVIGPLRI 90
>gi|154418588|ref|XP_001582312.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
gi|121916546|gb|EAY21326.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
Length = 740
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 86/127 (67%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
+ P ++RP V P+GHIFLE+FSP Y DF+IAIAEP RP+++ EY+++ YSL+
Sbjct: 57 LTFIPGSENRPAIVFPDGHIFLETFSPFYSKTVDFIIAIAEPCSRPKYMQEYQISPYSLF 116
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVS+GL I+ L +SKT++ D E I C + GK+KLVLK +Y+IES ++
Sbjct: 117 AAVSIGLTGDKIVHVLSLISKTALTDTFKEHIINCCQAVGKLKLVLKEQKYYIESIEEKL 176
Query: 177 LQKLLKD 183
+ +L+K+
Sbjct: 177 ISELIKE 183
>gi|160331520|ref|XP_001712467.1| rad25 [Hemiselmis andersenii]
gi|159765915|gb|ABW98142.1| rad25 [Hemiselmis andersenii]
Length = 638
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 78/118 (66%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PLWV P+G I E+FS DFLI I+EPV R + IHEY LT Y+LYAAV+ G+
Sbjct: 6 KPLWVFPDGFIMFETFSNPIEEVEDFLITISEPVSRTKLIHEYVLTPYALYAAVTSGMNG 65
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
D+I+ L++LSK +P I I++CT +GK+ LVL N YFI +P E+++ LL D
Sbjct: 66 SDVIKILRKLSKNLLPKTIFRMISICTQFFGKIHLVLFKNNYFIYAPNYEIIKTLLND 123
>gi|123492544|ref|XP_001326086.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
gi|121908995|gb|EAY13863.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
Length = 744
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 89/136 (65%)
Query: 53 YRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTA 112
Y + + + +RP V P+GHIF+E+FSP Y DF+IAIA+P RP+++ EY++
Sbjct: 54 YFKDLYILENSDNRPAIVMPDGHIFVETFSPFYSKVVDFIIAIADPCSRPKYVQEYQINP 113
Query: 113 YSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESP 172
YS+++AVS+GL+ +II L +SKT + D E I LC LS GK+K VL++ +Y+IES
Sbjct: 114 YSIFSAVSIGLKAKEIIRILAIISKTPLTDEFKEHIELCCLSVGKLKSVLRNTKYYIESN 173
Query: 173 FAEVLQKLLKDPVIQD 188
L +LL+ P ++
Sbjct: 174 EIRRLLELLEIPFFEE 189
>gi|169806188|ref|XP_001827839.1| DNA repair helicase [Enterocytozoon bieneusi H348]
gi|263505381|sp|A9CRJ7.1|RAD25_ENTBH RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|161779287|gb|EDQ31310.1| DNA repair helicase [Enterocytozoon bieneusi H348]
Length = 609
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 91/149 (61%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
+K + + PLW+ +G I LE F + A +FLIAIAEP+ RPE+IHEY++T YSL+AA
Sbjct: 1 MKENSEDCPLWINYDGLIILEMFRENSQQATNFLIAIAEPISRPENIHEYQITPYSLFAA 60
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
SVGL T I L++ SK +P + I+ CTLSYGK+KLV + ++FIE ++
Sbjct: 61 ASVGLTTDQITNTLQKFSKNIIPRNVKNLISDCTLSYGKLKLVRQSQKFFIEVYNDKIFN 120
Query: 179 KLLKDPVIQDCRLRRDTEDSQTLINQADK 207
+ D +++ + + ++ + I +K
Sbjct: 121 FITSDEILKSFIVNSNIDELKIEITNVEK 149
>gi|399949903|gb|AFP65559.1| DNA repair helicase [Chroomonas mesostigmatica CCMP1168]
Length = 637
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
++PLWV P+G+I E F DFLI+IAEP+ R + IHEY LT YSLYAA++ G+
Sbjct: 5 NKPLWVFPDGYILFEKFLNFSEEVGDFLISIAEPISRKKLIHEYVLTPYSLYAAITSGIS 64
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
+ ++I+ +++LSK P I IN+ T +GK+ L+L N+YFI +P ++L+ LL D
Sbjct: 65 SFEVIKIIRKLSKNLFPKLIFRMINISTRFFGKINLILFKNKYFIYAPNLKILRILLND 123
>gi|443918514|gb|ELU38961.1| DNA repair helicase RAD25 [Rhizoctonia solani AG-1 IA]
Length = 823
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 75/134 (55%), Gaps = 36/134 (26%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
LKPDH SRPLW++P + HI LE FSP+ A DFL+AI+EP+ R
Sbjct: 116 LKPDHASRPLWISPEDNHIILEGFSPIAEQAQDFLVAISEPISR---------------- 159
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
Y+ VPD +V FI CT YGKVKLVLKHN+Y++ES A++L
Sbjct: 160 -------------YV------PVPDTVVRFIKDCTKHYGKVKLVLKHNKYYVESTHADIL 200
Query: 178 QKLLKDPVIQDCRL 191
Q LLKD I+ R+
Sbjct: 201 QNLLKDNAIRHARV 214
>gi|340506420|gb|EGR32554.1| hypothetical protein IMG5_077910 [Ichthyophthirius multifiliis]
Length = 736
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 8/172 (4%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
+D++ DY + + LK D+++RPL+++P+G+IFLE+FSP+YR A+ FLI+IAEP+ RP
Sbjct: 4 DDDYDFHDY-SYIKLKQDYENRPLFLSPDGYIFLETFSPLYRTAYQFLISIAEPIQRPLT 62
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT-SVPDGIVEFINLCTLSYGKVKLVLK 163
+H++ ++ YSLY A+ + + DII LK LSK +P I+++I T +YG +L L
Sbjct: 63 VHKFVMSKYSLYTAMVLQYQPQDIILCLKELSKNREIPQTIIDYILQNTKNYGSARLFLD 122
Query: 164 HNRYF--IESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQ 213
YF IES E ++ +P I++ L +TE S I + +K+LK Q
Sbjct: 123 GQNYFLDIESKIWEQIK--YDNPQIKN--LICETEFSFDNIIKENKELKEIQ 170
>gi|162605680|ref|XP_001713355.1| DNA repair helicase [Guillardia theta]
gi|13794287|gb|AAK39664.1|AF083031_21 DNA repair helicase [Guillardia theta]
Length = 617
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 77/124 (62%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
H +PLW+ +G+I E+F+ DFL++I+EPV R + IHEY LT YSLYAAV+ G
Sbjct: 4 HNIKPLWLFNDGYIIFETFNCFLIEIEDFLVSISEPVVRTKLIHEYVLTPYSLYAAVTSG 63
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLK 182
+++ DII LK+L K + + I CT YGK++L+L N Y+I ++L+ L
Sbjct: 64 IKSDDIIYSLKKLVKNKISKVVKNMIYYCTKLYGKIQLILHLNDYYIYLQSFKILKIFLN 123
Query: 183 DPVI 186
D ++
Sbjct: 124 DKIL 127
>gi|118400703|ref|XP_001032673.1| DNA repair helicase rad25 family protein [Tetrahymena thermophila]
gi|89287017|gb|EAR85010.1| DNA repair helicase rad25 family protein [Tetrahymena thermophila
SB210]
Length = 832
Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 62/168 (36%), Positives = 101/168 (60%), Gaps = 4/168 (2%)
Query: 52 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT 111
DY + + LK D++ RP+ + P+G IFLE+F+P+YR A+ FLI+I EPV RP +H++ LT
Sbjct: 60 DY-STLELKDDYRERPILICPDGIIFLETFNPLYRVAYQFLISIGEPVQRPLSMHKFTLT 118
Query: 112 AYSLYAAVSVGLETHDIIEYLKRLSKT-SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
YSLY A+ + E DII L++LSK +P + +I T +YG +L L + Y+++
Sbjct: 119 KYSLYTAMVLQYEPKDIILCLEKLSKNKKIPKEVERYITENTQNYGAARLFLDDSSYYLD 178
Query: 171 SPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYS 218
+ ++P I+D + + + +INQ +K+L+ Q L S
Sbjct: 179 IDSQVWTSIIERNPHIKDL-VSQTQFNFDNIINQ-NKELRDIQKDLQS 224
>gi|330040674|ref|XP_003239990.1| DNA repair helicase [Cryptomonas paramecium]
gi|327206916|gb|AEA39092.1| DNA repair helicase [Cryptomonas paramecium]
Length = 624
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
++ +W++P+G+I E F + DFL+ ++EPV R + I E+ LT Y+LYAAV+ GL
Sbjct: 10 TKIIWISPSGYILFELFKKKTKEIEDFLVTVSEPVSRTKKIQEFVLTPYALYAAVTSGLY 69
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKD 183
DI++ + +LSK +P I + I CT YGKV L+L YFI P +L+ LL D
Sbjct: 70 VWDILKIIIKLSKNLLPKMIYKMILNCTKFYGKVNLILYKCNYFIYIPSLFLLKFLLTD 128
>gi|321466390|gb|EFX77386.1| hypothetical protein DAPPUDRAFT_247766 [Daphnia pulex]
Length = 135
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 110 LTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
L Y LYAA G+ET DII+ LK++SKT VPDGIV++I + TL+YGK+ LVLK+N YF+
Sbjct: 38 LGPYLLYAAACCGVETQDIIDSLKKVSKTVVPDGIVKYIQISTLTYGKISLVLKNNCYFV 97
Query: 170 ESPFAEVLQKLLKDPVIQDCRLRRD 194
E+ + +VL +LL VI++C++ D
Sbjct: 98 ETQYQDVLTELL--GVIEECQVEMD 120
>gi|145525669|ref|XP_001448651.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416206|emb|CAK81254.1| unnamed protein product [Paramecium tetraurelia]
Length = 708
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 52 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT 111
DYR +++ + +PL ++P+ I +E F+P+Y A +FL+ +AEP+ R E IHEY LT
Sbjct: 27 DYRNIEIVQSN---KPLILSPDLGIIVEKFNPLYEIAFEFLMCVAEPISRSELIHEYVLT 83
Query: 112 AYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
S+Y A+ + DII L LSK VP + +FI T + G+ K L+ Y+I+
Sbjct: 84 QMSMYTAMVLQYSADDIIRLLDLLSKNKVPQRMEQFIRHHTNNIGQAKFFLQDKSYYID 142
>gi|407034427|gb|EKE37204.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 651
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
ED + DY M LKP+H P+WV+ N I +E+ + +++ D+L +A+ R EH
Sbjct: 17 EDMKESTDY--DMRLKPNHSELPMWVSSNLRIVVETSNDMFKEVSDYLSRVAQVKSRMEH 74
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY+LT S+ A S G +I L++ SK +PD + I +LVL +
Sbjct: 75 MHEYQLTPTSIMTAFSFGSTPEAMISTLEKYSKNYLPDNVKSQIRQAGEKKQNFRLVLIN 134
Query: 165 NRYFIESPFAEVLQKLLKDPVIQ 187
+Y++++ E ++K++++ Q
Sbjct: 135 GKYYLQAESQEQMKKVMEENFKQ 157
>gi|67467062|ref|XP_649651.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466136|gb|EAL44265.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449709415|gb|EMD48686.1| rad25/xpB DNA repair helicase, putative [Entamoeba histolytica
KU27]
Length = 648
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
ED + DY M LKP+H P+WV+ N I +E+ + +++ D+L +A+ R EH
Sbjct: 17 EDMKESTDY--DMRLKPNHPELPMWVSSNLRIVVETSNDMFKEVSDYLSRVAQVKSRMEH 74
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY+LT S+ A S G +I L++ SK +PD + I +LVL +
Sbjct: 75 MHEYQLTPTSIMTAFSFGSTPEAMISTLEKYSKNYLPDNVKSQIRQAGEKKQNFRLVLIN 134
Query: 165 NRYFIESPFAEVLQKLLKDPVIQ 187
+Y++++ E ++K++++ Q
Sbjct: 135 GKYYLQAESQEQMKKVMEENFKQ 157
>gi|167392006|ref|XP_001739987.1| rad25/xp-B DNA repair helicase [Entamoeba dispar SAW760]
gi|165896120|gb|EDR23627.1| rad25/xp-B DNA repair helicase, putative [Entamoeba dispar SAW760]
Length = 651
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 73/131 (55%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LKP+H P+WV+ N I +E+ + +++ D+L +A+ R EH+HEY+LT S+
Sbjct: 27 MRLKPNHPELPMWVSSNLRIVVETSNDMFKEVSDYLSRVAQVKSRMEHMHEYQLTPTSIM 86
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
A S G +I L++ SK +PD + I +LVL + +Y++++ E
Sbjct: 87 TAFSFGSTPEAMISTLEKYSKNYLPDNVKSQIRQAGEKKQNFRLVLINGKYYLQAESQEQ 146
Query: 177 LQKLLKDPVIQ 187
++K++++ Q
Sbjct: 147 MKKVMEENFKQ 157
>gi|428175063|gb|EKX43955.1| ERCC3/XPB/SSL2/Rad25 nucleotide excision repair [Guillardia theta
CCMP2712]
Length = 694
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 17/115 (14%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLC 151
+IAIAEP +SL+AAVS+GL++ II L L KT VP I FI C
Sbjct: 1 MIAIAEP--------------HSLHAAVSIGLDSETIISRLSMLCKTRVPTSIENFIRNC 46
Query: 152 TLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQAD 206
T YGKVK+V+ +R+F+E+P + ++L D VI+ R + Q ++N D
Sbjct: 47 TAVYGKVKMVIVDDRFFLETPSKAIYERLRGDDVIKSAMTGR---EGQGILNDTD 98
>gi|440298661|gb|ELP91292.1| DNA repair helicase XPB2, putative [Entamoeba invadens IP1]
Length = 632
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 39 DDAAVPEDEFGAKD--YRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIA 96
DD A ED G + + M LK +H P+WV IF+E+ S ++ + L +A
Sbjct: 7 DDEASSEDIDGVETGFVESDMKLKANHLELPMWVCTQSRIFVETSSDLFDEVSELLNRVA 66
Query: 97 EPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYG 156
E R ++IHEY+LT S+ A S G+ ++I L + SK +PD + I
Sbjct: 67 EAASRLKYIHEYRLTDNSIMTAFSFGMTPEELIISLDKYSKNILPDNVKSQIRQVGEKNQ 126
Query: 157 KVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDC 189
++LVL + +Y++++ + L+ +L + + C
Sbjct: 127 NLRLVLINGKYYLQAETEDQLKNVLDEKIKTYC 159
>gi|385302857|gb|EIF46965.1| dna repair helicase rad25 [Dekkera bruxellensis AWRI1499]
Length = 172
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FGA D+ + + LK D+ SRPLW+ +G I+LESFSP++ A DFLI IAEPV RP IH
Sbjct: 94 FGASDF-SYLNLKXDNASRPLWINXLDGRIYLESFSPLFEQAQDFLITIAEPVSRPSFIH 152
Query: 107 EYKL 110
EY++
Sbjct: 153 EYRI 156
>gi|146164780|ref|XP_001470758.1| rad25/xp-B DNA repair helicase [Tetrahymena thermophila]
gi|146145659|gb|EDK31797.1| rad25/xp-B DNA repair helicase [Tetrahymena thermophila SB210]
Length = 698
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 75 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR 134
+IF+E+F Y+ ++FLI IAEPV +P IH YK+T +S+Y A+S+ L IIE L +
Sbjct: 55 YIFVEAFHEKYKEVYEFLIKIAEPVNKPNFIHVYKITLFSMYTAMSLNLNAEKIIESLMQ 114
Query: 135 LSKTSV-PDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLK 182
SK V P +EFI T G L + Y+++ E L+K+++
Sbjct: 115 YSKNEVIPKSFIEFIENKTKKAGSAYLYMIKKNYYLKI-HQEFLEKIIR 162
>gi|118365862|ref|XP_001016150.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89297917|gb|EAR95905.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 683
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 75 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR 134
+IF+E+F Y+ ++FLI IAEPV +P IH YK+T +S+Y A+S+ L IIE L +
Sbjct: 55 YIFVEAFHEKYKEVYEFLIKIAEPVNKPNFIHVYKITLFSMYTAMSLNLNAEKIIESLMQ 114
Query: 135 LSKTSV-PDGIVEFINLCTLSYGKVKL-VLKHNRYF-IESPFAE 175
SK V P +EFI T G L ++K N Y I F E
Sbjct: 115 YSKNEVIPKSFIEFIENKTKKAGSAYLYIIKKNYYLKIHQDFLE 158
>gi|281201244|gb|EFA75456.1| transcription factor IIH subunit [Polysphondylium pallidum PN500]
Length = 690
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 38/47 (80%)
Query: 52 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 98
DY LK D+K+RP+WV P+GHIFLE+FSP+Y+ A DFL+AIAEP
Sbjct: 112 DYSKICQLKTDNKTRPIWVCPDGHIFLETFSPIYKQASDFLVAIAEP 158
>gi|71415150|ref|XP_809651.1| DNA repair helicase [Trypanosoma cruzi strain CL Brener]
gi|70874067|gb|EAN87800.1| DNA repair helicase, putative [Trypanosoma cruzi]
Length = 778
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 70 VAPNGHIFL--ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
V+ G++ L E+F ++ FL IAEP RP +HEY++T +SL AAVS + D
Sbjct: 10 VSAEGYVVLLAETFRSSFQRIQFFLTTIAEPTSRPSLMHEYRMTPFSLGAAVSASIPVSD 69
Query: 128 IIEYLKRLSKTSVPDG-------IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
+I +L +G + F+ +C Y ++V++ R F+E E + L
Sbjct: 70 VICFLDEYVYGFCDEGENSRRARVCAFLEMCMSRYNLARIVIEDARTFVECDNVETAETL 129
Query: 181 LKDPVIQ 187
L DPV++
Sbjct: 130 LLDPVVR 136
>gi|373487888|ref|ZP_09578554.1| helicase domain protein [Holophaga foetida DSM 6591]
gi|372007662|gb|EHP08291.1| helicase domain protein [Holophaga foetida DSM 6591]
Length = 580
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
+ L+PD+ PL V + + LE P + D L AE V PEHIH Y++T SL+
Sbjct: 2 IALRPDN---PLIVQSDRTLLLEVAHPSFEQVRDELAGFAELVKSPEHIHTYRVTPLSLW 58
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE 170
A + GL DI+ L R SK VP +++ I YG+++LV K +R +E
Sbjct: 59 NASASGLSCEDILSTLNRWSKYPVPQNLIQEIQDHGTRYGRLRLVRKGDRLALE 112
>gi|407848115|gb|EKG03589.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi]
Length = 778
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 70 VAPNGHIFL--ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
V+ G++ L E+F ++ FL IAEP RP +HEY++T +SL AAVS + D
Sbjct: 10 VSAEGYVVLLAETFRSSFQRIQFFLATIAEPTSRPSLMHEYRMTPFSLGAAVSASIPVSD 69
Query: 128 IIEYLKRLSKTSVPDG-------IVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
+I +L +G + F+ +C Y ++V++ R F+E E + L
Sbjct: 70 VICFLDEYVYGFCDEGENSRRARVCAFLEMCMSRYNLARIVIEGARTFVECDNVETAETL 129
Query: 181 LKDPVIQD 188
L DPV++
Sbjct: 130 LLDPVVRS 137
>gi|407044253|gb|EKE42473.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 589
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 13/117 (11%)
Query: 32 AKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDF 91
K +E DD+ DEF + Q++ + S P W+ PNG I +E + Y+ A +F
Sbjct: 1 MKSTIENDDS----DEF-----KLQII----NTSNPYWICPNGLIIIERDNKNYQIASEF 47
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFI 148
+ I++ C EH+ EY +T Y++Y+A+S G++ II LK+ SK ++P+ I + I
Sbjct: 48 IKKISKVKCLLEHMEEYIITEYTIYSAISSGIKPEIIIYQLKKYSKNNIPERIEQLI 104
>gi|167386165|ref|XP_001733392.1| rad25/xp-B DNA repair helicase [Entamoeba dispar SAW760]
gi|165899480|gb|EDR26066.1| rad25/xp-B DNA repair helicase, putative [Entamoeba dispar SAW760]
Length = 624
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 10/117 (8%)
Query: 32 AKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDF 91
K N+E ++ ED ++Y +++ + S P WV PNG I +E + Y+ A +F
Sbjct: 1 MKSNIENNN---DED---LEEYNVEII----NTSNPYWVCPNGLIIIERDNKNYQIASEF 50
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFI 148
+ I++ EHI EY +T Y++Y+A+S+G+E II LK+ SK ++P+ I I
Sbjct: 51 IKKISKVKSLLEHIEEYIITEYTIYSAISIGIEAETIIYQLKKYSKNNIPERIKTLI 107
>gi|67479133|ref|XP_654948.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472042|gb|EAL49560.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703271|gb|EMD43753.1| rad25/xpB DNA repair helicase, putative [Entamoeba histolytica
KU27]
Length = 589
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 13/117 (11%)
Query: 32 AKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDF 91
K +E DD+ ++++ Q++ + S P W+ PNG I +E + Y+ A +F
Sbjct: 1 MKSTIENDDS---------EEFKLQII----NTSNPYWICPNGLIIIERDNKNYQIASEF 47
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFI 148
+ I++ C EH+ EY +T Y++Y+A+S G++ II LK+ SK ++P+ I + I
Sbjct: 48 IKKISKVKCLLEHMEEYIITEYTIYSAISSGIKPEIIIYQLKKYSKNNIPERIEQLI 104
>gi|407408839|gb|EKF32113.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi marinkellei]
Length = 778
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 70 VAPNGHIFL--ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
V+ G++ L E+F ++ FL IAEP RP +HEY++T +SL AAVS + D
Sbjct: 10 VSAEGYVVLLAETFRSSFQRIQFFLTTIAEPTSRPSLMHEYRMTPFSLGAAVSASIPVSD 69
Query: 128 IIEYLKRL-------SKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
+I +L + S + F+ LC Y ++V+ R F+E E + L
Sbjct: 70 VICFLDEYVYGFCDEEENSPRARVCAFLELCMSRYNLARIVIDDARTFVECDNIETAEAL 129
Query: 181 LKDPVIQ 187
L DPV++
Sbjct: 130 LLDPVVR 136
>gi|296127753|ref|YP_003635005.1| helicase domain-containing protein [Brachyspira murdochii DSM
12563]
gi|296019569|gb|ADG72806.1| helicase domain protein [Brachyspira murdochii DSM 12563]
Length = 564
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 68/119 (57%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+K+ PL V +G I L+ + + +F++ AE V PE+IH Y++T SL+ A S+
Sbjct: 2 NKNAPLIVQGDGTILLDVSTKHFEEIRNFMLVFAELVKSPEYIHTYRITLVSLWNAASLN 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
+ II +LK+ + +P I++ I YG++K++ ++ +Y++ S ++ ++L
Sbjct: 62 YTSEQIIGFLKKYTSYEIPKNIIKQIETSIEKYGRIKIIKENEKYYLISEDKNIIDEIL 120
>gi|339628705|ref|YP_004720348.1| DEAD/DEAH box helicase [Sulfobacillus acidophilus TPY]
gi|379008866|ref|YP_005258317.1| type III restriction protein res subunit [Sulfobacillus acidophilus
DSM 10332]
gi|339286494|gb|AEJ40605.1| DEAD/DEAH box helicase-like protein [Sulfobacillus acidophilus TPY]
gi|361055128|gb|AEW06645.1| type III restriction protein res subunit [Sulfobacillus acidophilus
DSM 10332]
Length = 574
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE +P++ A D L AE + PEHIH Y+L+A SL+ A++ GL
Sbjct: 5 PLIVQSDLTILLEVDNPLFEEARDALSGFAELIKSPEHIHTYQLSALSLWNALAAGLTES 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
I E L R S VPD +++FI+ +G+++L
Sbjct: 65 QIQESLTRFSSYPVPDTVIQFIHDQVHRFGRIRL 98
>gi|384209279|ref|YP_005594999.1| DNA or RNA helicase of superfamily II [Brachyspira intermedia
PWS/A]
gi|343386929|gb|AEM22419.1| DNA or RNA helicase of superfamily II [Brachyspira intermedia
PWS/A]
Length = 564
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 68/119 (57%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+K+ PL V +G I L+ + + +F++ AE V PE+IH Y++T SL+ A S+
Sbjct: 2 NKNAPLIVQGDGTILLDVSTKHFEEIRNFMLVFAELVKSPEYIHTYRITLVSLWNAASLN 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
+ I+ +LK+ + +P IV+ I YG++K++ + ++Y++ S ++ ++L
Sbjct: 62 YTSEQILSFLKKYTSYEIPKNIVKQIETSIEKYGRIKIIKEDDKYYLISEDKNIIDEIL 120
>gi|429125100|ref|ZP_19185632.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30446]
gi|426279162|gb|EKV56189.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30446]
Length = 564
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 69/119 (57%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+K+ P+ V +G I L+ + + +F++ AE V PE+IH Y++T SL+ A S+
Sbjct: 2 NKNAPIIVQGDGTILLDVSTKHFEEIRNFMLVFAELVKSPEYIHTYRITLVSLWNAASLN 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
+ I+ +LK+ + +P IV+ I YG++K++ ++++Y++ S ++ ++L
Sbjct: 62 YTSDQILNFLKKYTSYEIPKNIVKQIETSIEKYGRIKIIKENDKYYLISEDKNIIDEIL 120
>gi|445063350|ref|ZP_21375562.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30599]
gi|444505257|gb|ELV05807.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30599]
Length = 564
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 69/119 (57%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+K+ P+ V +G I L+ + + +F++ AE V PE+IH Y++T SL+ A S+
Sbjct: 2 NKNAPIIVQGDGTILLDVSTKHFEEIRNFMLVFAELVKSPEYIHTYRITLVSLWNAASLN 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
+ I+ +LK+ + +P I++ I YG++K++ ++++Y++ S ++ ++L
Sbjct: 62 YTSDQILNFLKKYTSYEIPKNIIKQIETSIEKYGRIKIIKEYDKYYLISEDKNIIDEIL 120
>gi|225619690|ref|YP_002720947.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
WA1]
gi|225214509|gb|ACN83243.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
WA1]
Length = 564
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%)
Query: 64 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGL 123
K+ PL V +G I L+ + + +F++ AE V PE+IH Y++T SL+ A S+
Sbjct: 3 KNAPLIVQGDGTILLDVSTKHFEEIRNFMLVFAELVKSPEYIHTYRITLVSLWNAASLNY 62
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLL 181
+ I+ +L++ + +P IV+ I YG++K++ + ++Y++ S ++ ++L
Sbjct: 63 TSEQILNFLRKYTSYEIPKNIVKQIETSIEKYGRIKIIKEDDKYYLISEDKNIIDEIL 120
>gi|83590752|ref|YP_430761.1| DEAD/DEAH box helicase [Moorella thermoacetica ATCC 39073]
gi|83573666|gb|ABC20218.1| DEAD/DEAH box helicase-like protein [Moorella thermoacetica ATCC
39073]
Length = 602
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 54/104 (51%)
Query: 62 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
D PL V + I LE +P+Y A D L AE V PEHIH Y+LT SL+ A +
Sbjct: 3 DMSDAPLVVQSDRTILLEVDNPLYPEARDALARFAELVKSPEHIHTYRLTPLSLWNAAAG 62
Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
GL+ II+ L SK +P +V I YGKVKLV +
Sbjct: 63 GLDAATIIQVLADYSKYPLPANVVADIREYVGRYGKVKLVARGT 106
>gi|308160768|gb|EFO63241.1| DNA repair helicase TFIIH P90 [Giardia lamblia P15]
Length = 765
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 17/150 (11%)
Query: 59 LKPDHKSRPLWVAPNGH--------IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
LKPDH RPL + P + LE+FSP+Y A++FL+++AE RP ++HEY++
Sbjct: 13 LKPDHHKRPLSIFPYSTNVLSADHVVLLETFSPMYDEAYNFLVSLAEAETRPTYVHEYRI 72
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSK-TSVPDGIVEFINLCTLSYGKVKL-VLKHNRYF 168
T SL+ +S+G +I L SK +P ++ + + + G + + NR+
Sbjct: 73 TEESLHIGLSLGYTATEIEIRLGYYSKYRRLPPTLLSALRRLSNNQGTISFSIYDSNRFL 132
Query: 169 IESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
+ P Q L P I+D L D DS
Sbjct: 133 LRVP-----QTLDLTPDIKD--LLDDASDS 155
>gi|159111749|ref|XP_001706105.1| DNA repair helicase TFIIH P90 [Giardia lamblia ATCC 50803]
gi|157434198|gb|EDO78431.1| DNA repair helicase TFIIH P90 [Giardia lamblia ATCC 50803]
Length = 765
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 59 LKPDHKSRPLWVAPNGH--------IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
LKPDH RPL V P + LE+FSP+Y A++FL+++AE RP ++HEY++
Sbjct: 13 LKPDHHKRPLSVFPYSTNALSADHVVLLETFSPMYDEAYNFLVSLAEAETRPTYVHEYRI 72
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSK-TSVPDGIVEFINLCTLSYGKVKL-VLKHNRYF 168
T SL+ +S+G +I L SK +P ++ + + G + + NR+
Sbjct: 73 TEESLHIGLSLGYTATEIEIRLGYYSKYRRLPPTLLSALRRLANNQGTISFSIYDSNRFL 132
Query: 169 IESP 172
+ P
Sbjct: 133 LRVP 136
>gi|253745292|gb|EET01319.1| DNA repair helicase TFIIH P90 [Giardia intestinalis ATCC 50581]
Length = 765
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 15/140 (10%)
Query: 59 LKPDHKSRPLWV---APNGH-----IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKL 110
L+PDH RPL + +PN + LE+FSP+Y A++FL+++AE RP ++HEY++
Sbjct: 13 LRPDHHKRPLSIFPYSPNALSADHVVLLETFSPMYDEAYNFLVSLAEAETRPTYVHEYRI 72
Query: 111 TAYSLYAAVSVGLETHDIIEYLKRLSK-TSVPDGIVEFINLCTLSYGKVKL-VLKHNRYF 168
T SL+ +S+G +I L SK +P ++ + + G + + NR+
Sbjct: 73 TEESLHIGLSLGYTATEIEIRLGYYSKYRRLPPTLLSALRRLANNQGTISFSIYDSNRFL 132
Query: 169 IESPFAEVLQKLLKDPVIQD 188
+ P Q L P I+D
Sbjct: 133 LRVP-----QSLELTPDIKD 147
>gi|300870216|ref|YP_003785087.1| putative DNA repair helicase [Brachyspira pilosicoli 95/1000]
gi|404475446|ref|YP_006706877.1| DNA repair helicase [Brachyspira pilosicoli B2904]
gi|431806738|ref|YP_007233636.1| DNA repair helicase [Brachyspira pilosicoli P43/6/78]
gi|434382657|ref|YP_006704440.1| putative DNA repair helicase [Brachyspira pilosicoli WesB]
gi|300687915|gb|ADK30586.1| putative DNA repair helicase [Brachyspira pilosicoli 95/1000]
gi|404431306|emb|CCG57352.1| putative DNA repair helicase [Brachyspira pilosicoli WesB]
gi|404436935|gb|AFR70129.1| putative DNA repair helicase [Brachyspira pilosicoli B2904]
gi|430780097|gb|AGA65381.1| putative DNA repair helicase [Brachyspira pilosicoli P43/6/78]
Length = 565
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+ + P+ V +G I L+ + + +FL+ AE V PE+IH Y++T SL+ A S+
Sbjct: 2 NNNAPIIVQGDGTILLDVSTEHFEEIRNFLLVFAELVKSPEYIHTYRITLVSLWNAASLN 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK-HNRYFIESPFAEVLQKLL 181
II++LK+ S +P IV+ I YG++K++ + ++Y++ S +++++L
Sbjct: 62 YTAQSIIDFLKKYSSYDIPKNIVKQIESSISKYGRIKIIKEDDDKYYLVSDDESIIEEVL 121
>gi|357012432|ref|ZP_09077431.1| putative ATP-dependent helicase [Paenibacillus elgii B69]
Length = 564
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
HK RPL V + + LE P + A L A+ V PE+IH Y++++ SL+ A + G
Sbjct: 4 HKDRPLIVQTDFCVLLEVRHPAFEEARTGLAKFADLVKSPENIHTYRMSSLSLWNAAAAG 63
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
L + +I+ +L R +K VP G+ + I YG V++
Sbjct: 64 LTSEEIVGFLDRHAKFGVPTGVKQDIRRFVERYGLVRM 101
>gi|374581962|ref|ZP_09655056.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374418044|gb|EHQ90479.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 569
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ P+ V + + LE +P+Y A D L AE PE+IH Y++T SL+ A S G+
Sbjct: 5 ANPVIVQSDRSVLLEVHNPLYEEARDTLAIFAELEKSPEYIHTYRITPLSLWNAASSGVS 64
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
D++ L+ SK +PD + I YG VKLV + ++ + + KDP
Sbjct: 65 VADVLNGLENYSKFPLPDSVRTEIQQLMGRYGLVKLVREGDKLLLAA----------KDP 114
Query: 185 VI 186
VI
Sbjct: 115 VI 116
>gi|42528221|ref|NP_973319.1| helicase [Treponema denticola ATCC 35405]
gi|449110813|ref|ZP_21747413.1| hypothetical protein HMPREF9735_00462 [Treponema denticola ATCC
33521]
gi|449114373|ref|ZP_21750851.1| hypothetical protein HMPREF9721_01369 [Treponema denticola ATCC
35404]
gi|41819491|gb|AAS13238.1| helicase domain protein [Treponema denticola ATCC 35405]
gi|448956525|gb|EMB37285.1| hypothetical protein HMPREF9721_01369 [Treponema denticola ATCC
35404]
gi|448960187|gb|EMB40904.1| hypothetical protein HMPREF9735_00462 [Treponema denticola ATCC
33521]
Length = 590
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ VPD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKVPDSILVWMKETMGRYGKIKLL 100
>gi|449108300|ref|ZP_21744944.1| hypothetical protein HMPREF9722_00640 [Treponema denticola ATCC
33520]
gi|449118979|ref|ZP_21755380.1| hypothetical protein HMPREF9725_00845 [Treponema denticola H1-T]
gi|449121368|ref|ZP_21757720.1| hypothetical protein HMPREF9727_00480 [Treponema denticola MYR-T]
gi|448951594|gb|EMB32407.1| hypothetical protein HMPREF9727_00480 [Treponema denticola MYR-T]
gi|448952007|gb|EMB32816.1| hypothetical protein HMPREF9725_00845 [Treponema denticola H1-T]
gi|448962150|gb|EMB42844.1| hypothetical protein HMPREF9722_00640 [Treponema denticola ATCC
33520]
Length = 590
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ VPD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKVPDSILVWMKETMGRYGKIKLL 100
>gi|449105854|ref|ZP_21742547.1| hypothetical protein HMPREF9729_00812 [Treponema denticola ASLM]
gi|451970143|ref|ZP_21923372.1| hypothetical protein HMPREF9728_02584 [Treponema denticola US-Trep]
gi|448966634|gb|EMB47287.1| hypothetical protein HMPREF9729_00812 [Treponema denticola ASLM]
gi|451701205|gb|EMD55685.1| hypothetical protein HMPREF9728_02584 [Treponema denticola US-Trep]
Length = 590
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ VPD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKVPDSILVWMKETMGRYGKIKLL 100
>gi|449104059|ref|ZP_21740801.1| hypothetical protein HMPREF9730_01698 [Treponema denticola AL-2]
gi|448963916|gb|EMB44590.1| hypothetical protein HMPREF9730_01698 [Treponema denticola AL-2]
Length = 590
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ VPD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKVPDSILVWMKETMGRYGKIKLL 100
>gi|449116951|ref|ZP_21753395.1| hypothetical protein HMPREF9726_01380 [Treponema denticola H-22]
gi|448952215|gb|EMB33019.1| hypothetical protein HMPREF9726_01380 [Treponema denticola H-22]
Length = 590
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ VPD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKVPDSILVWMKETMGRYGKIKLL 100
>gi|449124740|ref|ZP_21761059.1| hypothetical protein HMPREF9723_01103 [Treponema denticola OTK]
gi|449129740|ref|ZP_21765969.1| hypothetical protein HMPREF9724_00634 [Treponema denticola SP37]
gi|448943071|gb|EMB23965.1| hypothetical protein HMPREF9723_01103 [Treponema denticola OTK]
gi|448945230|gb|EMB26104.1| hypothetical protein HMPREF9724_00634 [Treponema denticola SP37]
Length = 572
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ VPD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKVPDSILVWMKETMGRYGKIKLL 100
>gi|449126575|ref|ZP_21762860.1| hypothetical protein HMPREF9733_00263 [Treponema denticola SP33]
gi|448946489|gb|EMB27344.1| hypothetical protein HMPREF9733_00263 [Treponema denticola SP33]
Length = 571
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ VPD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKVPDSILVWMKETMGRYGKIKLL 100
>gi|157874471|ref|XP_001685718.1| putative DNA repair helicase [Leishmania major strain Friedlin]
gi|68128790|emb|CAJ08923.1| putative DNA repair helicase [Leishmania major strain Friedlin]
Length = 806
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR- 134
I ESF Y + FL +AE + RP +HEY LT +SL AAVS G++ + +L+
Sbjct: 30 IIAESFRRSYVNIRPFLTTLAEAISRPSLMHEYLLTPFSLGAAVSNGIDAAEATAFLETH 89
Query: 135 ---LSKTSVPDGIV-EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
L+++S +V +FI C Y ++++ R ++ E Q LL+D VI
Sbjct: 90 AYGLAESSERRQLVRQFIESCMKRYNLARIIIDAERTLVQCKNEETAQMLLRDAVI 145
>gi|401427509|ref|XP_003878238.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494485|emb|CBZ29787.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 806
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR- 134
I ESF Y L +AE + RP +HEY+LT +SL AAVS G++ + +L+
Sbjct: 30 IIAESFRRSYVIIRPLLTTLAEAISRPSLMHEYRLTPFSLGAAVSNGIDAAEATAFLETY 89
Query: 135 ---LSKTSVPDGIV-EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
L+++S +V +FI C Y ++++ +R ++ E Q LL+D VI
Sbjct: 90 AYGLAESSERRKLVRQFIESCMTCYNLARIIIDSDRTLVQCKNEETAQMLLRDAVI 145
>gi|422341009|ref|ZP_16421950.1| helicase domain-containing protein [Treponema denticola F0402]
gi|325474580|gb|EGC77766.1| helicase domain-containing protein [Treponema denticola F0402]
Length = 590
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+S+PL + + I L+ P A LI AE PEH+H Y+LT SL+ A VG
Sbjct: 2 QESKPLIIQGDRSILLDIHDPEANEARFALIPFAELEKSPEHLHTYRLTPLSLWNAAGVG 61
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
L I++ L S+ +PD I+ ++ YGK+KL+
Sbjct: 62 LSADSIMKTLTGFSRFKIPDSILVWMKETMGRYGKIKLL 100
>gi|320538234|ref|ZP_08038123.1| type III restriction enzyme, res subunit [Treponema phagedenis
F0421]
gi|320144916|gb|EFW36643.1| type III restriction enzyme, res subunit [Treponema phagedenis
F0421]
Length = 562
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PL + + I L+ +P + A LI AE PEH+H Y+LT SL+ A S G
Sbjct: 6 KPLIIQGDRSILLDVHTPEAQEARFSLIPFAELEKSPEHLHTYRLTPLSLWNAASAGFSA 65
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
I++ L R S+ +VP+ I+ ++ YGK++L+
Sbjct: 66 EQIMQTLIRFSRFTVPESILAWMKETISRYGKIRLL 101
>gi|298242514|ref|ZP_06966321.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555568|gb|EFH89432.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 571
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
P+ V + + LE ++ A D L AE PEHIH Y+L+ SL+ A S G++
Sbjct: 6 PMIVQSDRTVLLEVDHSLHAEARDALSRFAELEKSPEHIHTYRLSPLSLWNAASGGMQAP 65
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
I++ L+R SK +P I+ I+ YG++KL+ ++ + S + ++ ++L +I
Sbjct: 66 AIVDLLERYSKYPLPPNILTDIHDYISRYGRLKLIRDGDQLLLTSEDSRLITEILHHRLI 125
Query: 187 QDCRLRRDTEDSQTLINQADKK 208
Q LR D+ TL+ ++
Sbjct: 126 QPYLLR--PRDASTLLVDGSRR 145
>gi|359413327|ref|ZP_09205792.1| type III restriction protein res subunit [Clostridium sp. DL-VIII]
gi|357172211|gb|EHJ00386.1| type III restriction protein res subunit [Clostridium sp. DL-VIII]
Length = 556
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S P+ V + + +E + +Y D L AE + PE+IH YK++ SL+ A S G+
Sbjct: 6 SNPIIVQSDKTLVVEVNNELYTEVRDKLSRFAEVIKSPEYIHTYKISPLSLWNAASSGMS 65
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIES 171
DIIE L++ SK +P +++ I YGK+K++ I+S
Sbjct: 66 FEDIIEILEKYSKYDIPQNVIKDIEDNINKYGKIKILRAGKDLIIKS 112
>gi|268323681|emb|CBH37269.1| putative helicase [uncultured archaeon]
Length = 567
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE + Y A D + AE + PEH+H Y++T SL+ A + G+
Sbjct: 8 PLIVQSDKTILLEVDNSRYEDARDTISGFAELIKSPEHVHTYRITNLSLWNAAASGMAAS 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
II L+ S+ +VP+ ++ I YG++KL + ++S +L++++++ +
Sbjct: 68 RIIAALEAYSRYAVPENVIIDIEDYVSRYGRLKLEMLDGSVVLQSDDEILLKEVMRNKKV 127
Query: 187 QDCRLRRDTEDSQTLI 202
Q L + D++T++
Sbjct: 128 QSY-LTEEQIDARTVV 142
>gi|345857196|ref|ZP_08809642.1| putative DNA HELICASE ERCC3 [Desulfosporosinus sp. OT]
gi|344329735|gb|EGW41067.1| putative DNA HELICASE ERCC3 [Desulfosporosinus sp. OT]
Length = 569
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ P+ V + + LE +P Y A D L AE PE+IH Y++T SL+ A S G+
Sbjct: 5 TNPVIVQSDRSVLLEVNNPFYEEARDALAIFAELEKSPEYIHTYRITPLSLWNAASSGVS 64
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLK 182
D++ L+ SK +PD + I YG VKLV ++ + + VL ++++
Sbjct: 65 VADVLNGLESYSKFPLPDSVRTEIQQLMGRYGLVKLVRDEDKLLLAAEDPVVLLEIIR 122
>gi|154343637|ref|XP_001567764.1| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065096|emb|CAM43210.1| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 803
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
I ESF Y L +AE V RP IHEY+LT +SL AAVS G++ + +L+
Sbjct: 30 ILAESFRGSYETIRPLLTTLAEAVSRPSLIHEYRLTPFSLGAAVSNGIDATEATTFLETY 89
Query: 136 SK-----TSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
+ + + +FI C Y V++++ R ++ E Q LL D VI
Sbjct: 90 AYGLATCSERRQRVRQFIESCMRRYNLVRVIIDSERTLVQCKNEETAQMLLCDAVI 145
>gi|251797763|ref|YP_003012494.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
gi|247545389|gb|ACT02408.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
Length = 554
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL + + + L+ P+ A LI AE V RP + H YK+++ SL+ A S G++
Sbjct: 8 PLIIQSDMTVLLDYEHPLSEEARRMLILFAELVKRPGNWHTYKMSSLSLWNAASTGMDAA 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
+IE L+ ++ +P + I + YGK++L + + + + +L++L P I
Sbjct: 68 TVIESLRNYARYGLPGVLETNIRMLMERYGKLRLEINECQLLLYGDDS-LLEELAGHPTI 126
Query: 187 QDCRLRRDTEDSQTLINQADKKLK 210
+C R ++ S + + +LK
Sbjct: 127 LECLKERGSDGSWEVYPEYRGQLK 150
>gi|410941403|ref|ZP_11373202.1| type III restriction enzyme, res subunit [Leptospira noguchii str.
2006001870]
gi|410783962|gb|EKR72954.1| type III restriction enzyme, res subunit [Leptospira noguchii str.
2006001870]
Length = 569
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSLVSKFAELEKSPEYLHTYRISPLSLWNAASIKMS 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|328949357|ref|YP_004366694.1| helicase [Treponema succinifaciens DSM 2489]
gi|328449681|gb|AEB15397.1| helicase domain protein [Treponema succinifaciens DSM 2489]
Length = 595
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + L+ +P+ LI AE V PEH+H Y++++ SL+ A S G
Sbjct: 7 PLIVQSDRTLLLDVHAPLAEECRAALIPFAELVRSPEHLHTYQISSLSLWNAESSGFTGE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+E LK+ S+ +P +V +I + +GK++LV
Sbjct: 67 QAVEVLKKFSRYEIPQSVVVWIEETSGRFGKLRLV 101
>gi|398337001|ref|ZP_10521706.1| superfamily II DNA/RNA helicase [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 569
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDKTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|398021308|ref|XP_003863817.1| helicase, putative [Leishmania donovani]
gi|322502050|emb|CBZ37134.1| helicase, putative [Leishmania donovani]
Length = 806
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR- 134
I ESF Y L +AE + RP +HEY+LT +SL AAVS G++ + +L+
Sbjct: 30 IIAESFRRSYVTIRPRLTTLAEAISRPSLMHEYRLTPFSLGAAVSNGIDAAEATAFLETY 89
Query: 135 ---LSKTSVPDGIV-EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
L+++S +V +FI C + Y ++++ R ++ E Q LL+D VI
Sbjct: 90 AYGLAESSERRQLVRQFIESCMMRYNLARIIIDAERTLVQCKNEETAQMLLRDAVI 145
>gi|146097223|ref|XP_001468079.1| putative DNA repair helicase [Leishmania infantum JPCM5]
gi|134072445|emb|CAM71155.1| putative DNA repair helicase [Leishmania infantum JPCM5]
Length = 806
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR- 134
I ESF Y L +AE + RP +HEY+LT +SL AAVS G++ + +L+
Sbjct: 30 IIAESFRRSYVTIRPRLTTLAEAISRPSLMHEYRLTPFSLGAAVSNGIDAAEATAFLETY 89
Query: 135 ---LSKTSVPDGIV-EFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
L+++S +V +FI C + Y ++++ R ++ E Q LL+D VI
Sbjct: 90 AYGLAESSERRQLVRQFIESCMMRYNLARIIIDAERTLVQCKNEETAQMLLRDAVI 145
>gi|257457572|ref|ZP_05622739.1| helicase domain protein [Treponema vincentii ATCC 35580]
gi|257444958|gb|EEV20034.1| helicase domain protein [Treponema vincentii ATCC 35580]
Length = 614
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PL + + I L+ +P A LI AE PEH+H Y+LT SL+ A S G
Sbjct: 51 KPLIIQGDRSILLDVHAPEATDARFALIPFAELEKSPEHLHTYRLTGLSLWNAASAGFTA 110
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
I + LKR S+ +P ++ ++ YGK+KL
Sbjct: 111 EKITDTLKRFSRFDIPPAVLGWVEETFSRYGKIKLT 146
>gi|418747212|ref|ZP_13303522.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. CBC379]
gi|418755555|ref|ZP_13311752.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. MOR084]
gi|421110258|ref|ZP_15570759.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. JET]
gi|422003710|ref|ZP_16350938.1| superfamily II DNA/RNA helicase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|409964017|gb|EKO31916.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. MOR084]
gi|410792006|gb|EKR89951.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. CBC379]
gi|410804443|gb|EKS10560.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. JET]
gi|417257680|gb|EKT87077.1| superfamily II DNA/RNA helicase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|456876697|gb|EMF91776.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. ST188]
Length = 569
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|421099792|ref|ZP_15560436.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
gi|410797216|gb|EKR99331.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
Length = 569
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|417780597|ref|ZP_12428358.1| type III restriction enzyme, res subunit [Leptospira weilii str.
2006001853]
gi|410779306|gb|EKR63923.1| type III restriction enzyme, res subunit [Leptospira weilii str.
2006001853]
gi|456865570|gb|EMF83904.1| type III restriction enzyme, res subunit [Leptospira weilii serovar
Topaz str. LT2116]
Length = 569
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|418719290|ref|ZP_13278490.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
gi|418738713|ref|ZP_13295106.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|421094322|ref|ZP_15555042.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410363048|gb|EKP14081.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410744443|gb|EKQ93184.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
gi|410745411|gb|EKQ98321.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 569
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|410451517|ref|ZP_11305520.1| type III restriction enzyme, res subunit [Leptospira sp. Fiocruz
LV3954]
gi|410014561|gb|EKO76690.1| type III restriction enzyme, res subunit [Leptospira sp. Fiocruz
LV3954]
Length = 569
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|116328103|ref|YP_797823.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331444|ref|YP_801162.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120847|gb|ABJ78890.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116125133|gb|ABJ76404.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 569
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|398332789|ref|ZP_10517494.1| superfamily II DNA/RNA helicase [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 569
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|398339178|ref|ZP_10523881.1| DNA or RNA helicase [Leptospira kirschneri serovar Bim str. 1051]
gi|418677043|ref|ZP_13238321.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|418688262|ref|ZP_13249418.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|418696605|ref|ZP_13257614.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H1]
gi|418739738|ref|ZP_13296119.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|421090818|ref|ZP_15551608.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 200802841]
gi|421132341|ref|ZP_15592509.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 2008720114]
gi|400322943|gb|EJO70799.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|409956134|gb|EKO15066.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H1]
gi|410000404|gb|EKO51034.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 200802841]
gi|410356106|gb|EKP03463.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 2008720114]
gi|410737119|gb|EKQ81861.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410752860|gb|EKR09832.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 569
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMS 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|418733506|ref|ZP_13290630.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12758]
gi|410773115|gb|EKR53146.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12758]
Length = 569
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMS 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|183221905|ref|YP_001839901.1| putative DNA repair helicase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911974|ref|YP_001963529.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776650|gb|ABZ94951.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780327|gb|ABZ98625.1| Putative DNA repair helicase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 565
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
++PL V + + LE +P + D + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 TKPLTVQSDKTMLLEVDNPEFEACRDLVAKFAELEKSPEYMHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+IIE L + ++ SVP ++ I YGKVKLV
Sbjct: 62 AEEIIEGLTKFARYSVPKNVMNEIREQISRYGKVKLV 98
>gi|24214829|ref|NP_712310.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
gi|45657657|ref|YP_001743.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074191|ref|YP_005988508.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
gi|417761127|ref|ZP_12409141.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000624]
gi|417763892|ref|ZP_12411865.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417768573|ref|ZP_12416501.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Pomona]
gi|417775460|ref|ZP_12423313.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000621]
gi|417783096|ref|ZP_12430819.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. C10069]
gi|418667771|ref|ZP_13229176.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418672678|ref|ZP_13234014.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000623]
gi|418681222|ref|ZP_13242455.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418692365|ref|ZP_13253443.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. FPW2026]
gi|418701013|ref|ZP_13261948.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418703992|ref|ZP_13264873.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418711136|ref|ZP_13271902.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418715905|ref|ZP_13275992.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 08452]
gi|418726410|ref|ZP_13285021.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12621]
gi|421085986|ref|ZP_15546837.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. HAI1594]
gi|421102319|ref|ZP_15562923.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421107529|ref|ZP_15568081.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H2]
gi|421116845|ref|ZP_15577220.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421120579|ref|ZP_15580890.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. Brem 329]
gi|421124173|ref|ZP_15584443.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421134687|ref|ZP_15594820.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|24195842|gb|AAN49328.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
gi|45600897|gb|AAS70380.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353457980|gb|AER02525.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
gi|400327043|gb|EJO79299.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400353724|gb|EJP05877.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400357598|gb|EJP13718.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. FPW2026]
gi|409943121|gb|EKN88724.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000624]
gi|409949546|gb|EKN99522.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Pomona]
gi|409953797|gb|EKO08293.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. C10069]
gi|409960320|gb|EKO24074.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12621]
gi|410007545|gb|EKO61255.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H2]
gi|410011655|gb|EKO69771.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410021271|gb|EKO88063.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410346693|gb|EKO97663.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. Brem 329]
gi|410367433|gb|EKP22817.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410431551|gb|EKP75911.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. HAI1594]
gi|410438660|gb|EKP87746.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410574785|gb|EKQ37814.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000621]
gi|410580366|gb|EKQ48191.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000623]
gi|410756216|gb|EKR17841.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410759911|gb|EKR26113.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410766360|gb|EKR37046.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410768736|gb|EKR43983.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410788133|gb|EKR81859.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 08452]
gi|455669031|gb|EMF34199.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455789603|gb|EMF41524.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456821496|gb|EMF70002.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. LT1962]
gi|456970563|gb|EMG11328.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
gi|456984533|gb|EMG20568.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 569
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMS 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|386725786|ref|YP_006192112.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus K02]
gi|384092911|gb|AFH64347.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus K02]
Length = 563
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
HK RPL + + I LE+ P + L A+ V PE+IH Y++++ SL+ A + G
Sbjct: 4 HKDRPLVIQNDFCILLETRHPSFEEVRAGLSRFADLVKSPENIHTYRMSSLSLWNAAAAG 63
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+ +I ++L+R +K +P + I YG V++
Sbjct: 64 ITVEEITDFLERWAKFGIPSAVKTDIRRFVERYGLVRM 101
>gi|337748137|ref|YP_004642299.1| ATP-dependent helicase [Paenibacillus mucilaginosus KNP414]
gi|379723001|ref|YP_005315132.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus 3016]
gi|336299326|gb|AEI42429.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus
KNP414]
gi|378571673|gb|AFC31983.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus 3016]
Length = 563
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
HK RPL + + I LE+ P + L A+ V PE+IH Y++++ SL+ A + G
Sbjct: 4 HKDRPLVIQNDFCILLETRHPSFEEVRAGLSRFADLVKSPENIHTYRMSSLSLWNAAAAG 63
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+ +I ++L+R +K +P + I YG V++
Sbjct: 64 ITVEEITDFLERWAKFGIPSAVKTDIRRFVERYGLVRM 101
>gi|335041027|ref|ZP_08534144.1| type III restriction protein res subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334179004|gb|EGL81652.1| type III restriction protein res subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 569
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
RPL + P+ I+LE P Y L + ++ + PEHIH Y++T SL+ A + G
Sbjct: 7 RPLVIQPDRTIYLEVNHPQYEDVRQKLQSFSDLIKSPEHIHTYRITPLSLWHAAARGQRA 66
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPV 185
DII +L+ +K + + + + I YG++ LV ++ + E LQ ++ P
Sbjct: 67 EDIISFLQAYAKFPLTNDVAQSIREDMDKYGQLTLVSLDTSLYLIADKLEALQAVIHYPS 126
Query: 186 I 186
+
Sbjct: 127 V 127
>gi|456887867|gb|EMF98880.1| helicase C-terminal domain protein [Leptospira borgpetersenii str.
200701203]
Length = 219
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+E L++ S+ SVP IV I YGKVKLV
Sbjct: 62 ADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLV 98
>gi|114777697|ref|ZP_01452657.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114551913|gb|EAU54447.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 554
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
H RPL V + + LE+ +P + A D + AE PEHIH Y+L SL+ A + G
Sbjct: 4 HPERPLIVQGDHSLLLETHNPQFADARDAIAPFAELEKSPEHIHSYRLHPLSLWNAAAAG 63
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
E L R SK S+P+ ++E + YG++ L
Sbjct: 64 HTLQQAEEALHRFSKYSIPENVLEEMRHTFARYGQLVLT 102
>gi|302339342|ref|YP_003804548.1| helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636527|gb|ADK81954.1| helicase domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 557
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
RPL V +G + ++ +P + + + AE PEHIH Y++T SL+ A S G+
Sbjct: 8 RPLIVQSDGSLLIDVHNPGFEGCREAIAPFAELEKSPEHIHTYRITPLSLWNAASAGIGK 67
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
D+++ L+R ++ VPD + I +GK+ L
Sbjct: 68 DDVLDRLERWTRFPVPDNVRFLIGDTIERFGKLIL 102
>gi|399052627|ref|ZP_10741929.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398049483|gb|EJL41902.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 554
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M +PD P+ V + I LE+ P + A + E + PE+IH Y++T SL+
Sbjct: 1 MSYRPD---LPMIVQSDRTILLETQHPQFAEARQAISGFCELLKSPEYIHTYRMTPLSLW 57
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
A + G++ H++ + L SK SVP IV+ I+ YG ++L
Sbjct: 58 NAAASGMQPHEVTDILGAYSKYSVPPTIVKEIDETMRKYGLIRL 101
>gi|418757586|ref|ZP_13313773.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384115363|gb|EIE01621.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
Length = 564
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDKTMLLEVDNPEFEACQLVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMS 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
+I+E L++ S+ SVP +V I YGKVKLV + N
Sbjct: 62 ADEIVECLEKYSRYSVPKNVVNEIREQIGRYGKVKLVKEEN 102
>gi|408793028|ref|ZP_11204638.1| type III restriction enzyme, res subunit [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408464438|gb|EKJ88163.1| type III restriction enzyme, res subunit [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 565
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
++PL V + + LE +P + D + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 TKPLTVQSDKTMLLEVDNPEFEACRDLVSKFAELEKSPEYMHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+IIE L + ++ SVP ++ + YGKVKLV
Sbjct: 62 ADEIIEGLTKFARYSVPKNVMNEVREQISRYGKVKLV 98
>gi|261416532|ref|YP_003250215.1| type III restriction protein res subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|385791387|ref|YP_005822510.1| putative helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|261372988|gb|ACX75733.1| type III restriction protein res subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326811|gb|ADL26012.1| putative helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 591
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
V N I +E +P Y A D + E V PEH+H YK++ SL+ A + GL +++
Sbjct: 9 VQSNLEIMVEVDNPNYTTARDAIAPFTELVKSPEHLHTYKISHLSLWNAAATGLRAPEVL 68
Query: 130 EYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIES 171
E L+ S+ +P +V I YG ++L + +R +ES
Sbjct: 69 ERLESQSRYPIPPTVVTEIEDYMARYGLLRLKKEDDRLLMES 110
>gi|339501119|ref|YP_004699154.1| type III restriction protein res subunit [Spirochaeta caldaria DSM
7334]
gi|338835468|gb|AEJ20646.1| type III restriction protein res subunit [Spirochaeta caldaria DSM
7334]
Length = 600
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ PL + + + ++ + A ++ AE V PEHIH Y++T SL+ A S GL
Sbjct: 5 ANPLIIQSDRTLLMDVHAEGAEEARSAIMPFAELVKSPEHIHTYQITPLSLWNAASAGLS 64
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
DI L+ S+ VP I+E YGK+KLV
Sbjct: 65 PQDIQRVLEAYSRYPVPRNILEGFADTMARYGKIKLV 101
>gi|333995987|ref|YP_004528600.1| dna repair helicase Rad25 [Treponema azotonutricium ZAS-9]
gi|333735550|gb|AEF81499.1| dna repair helicase Rad25 (general transcription and dnarepair
factor iih subunit rad25) (tfiih subunit rad25)
[Treponema azotonutricium ZAS-9]
Length = 573
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + L+ +P A ++ AE PEHIH Y++T SL+ A S G
Sbjct: 4 PLIVQSDRTLLLDVHAPRAEEARSAILPFAELEKSPEHIHTYRITPLSLWNAASAGYTPE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+ L ++ ++P G+ E + YGK++LV
Sbjct: 64 GVTAALNEFTRYAIPSGVTEGFSDTMARYGKIRLV 98
>gi|398347412|ref|ZP_10532115.1| DNA or RNA helicase [Leptospira broomii str. 5399]
Length = 565
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S+PL V + + LE +P + + AE PE++H Y+++ SL+ A S+ +
Sbjct: 2 SKPLIVQSDKTMLLEVDNPEFEVCQTVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMT 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
+I++ L++ S+ SVP ++ I YGKVKLV + N
Sbjct: 62 ADEIVQCLEQYSRYSVPKNVINEIREQIGRYGKVKLVKEEN 102
>gi|333997565|ref|YP_004530177.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-2]
gi|333740745|gb|AEF86235.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-2]
Length = 599
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S PL V + + L+ +P A ++ AE PEHIH +++T SL+ A S G
Sbjct: 6 SNPLIVQSDRTLLLDVHAPKAEEARAAIMPFAELEKSPEHIHTFRITPLSLWNAASAGFS 65
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
D+ L S+ VP IVE + YGK++LV
Sbjct: 66 PEDVTAVLDTYSRYPVPQSIVEGFSDTMDRYGKIRLV 102
>gi|320103370|ref|YP_004178961.1| type III restriction protein res subunit [Isosphaera pallida ATCC
43644]
gi|319750652|gb|ADV62412.1| type III restriction protein res subunit [Isosphaera pallida ATCC
43644]
Length = 568
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ PL V + + LE +P+Y A D L AE PEHIH Y+L+ SL+ A + G+
Sbjct: 6 TNPLIVQGDKTVLLEVDNPLYAEARDALATFAELEKSPEHIHTYRLSPLSLWNAAAAGMT 65
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++++ L+ SK +P + + YG++KL
Sbjct: 66 ADEMLKALETYSKFPLPMNLGPDLRETVSRYGRIKLT 102
>gi|393238849|gb|EJD46384.1| hypothetical protein AURDEDRAFT_164614 [Auricularia delicata
TFB-10046 SS5]
Length = 556
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 31/37 (83%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
L+AIAEPV RPE IHEY+LTA LYAA SVGL+T +I
Sbjct: 37 LVAIAEPVSRPEFIHEYQLTASPLYAAASVGLKTAEI 73
>gi|440295401|gb|ELP88314.1| rad25/xp-B DNA repair helicase, putative [Entamoeba invadens IP1]
Length = 605
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 47/85 (55%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
+ + P+WV PNG + +E+ P + A L+ I++ + + EY+++ Y+++ A++ G
Sbjct: 26 NNTNPMWVCPNGRVLVETTKPQSKTAIAILMKISKVTAQMDFFEEYQISDYTIFTALTSG 85
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEF 147
++ + + SK S+P + E
Sbjct: 86 VDVMSVFAEFSKYSKNSIPHEVAEL 110
>gi|330836652|ref|YP_004411293.1| helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748555|gb|AEC01911.1| helicase domain protein [Sphaerochaeta coccoides DSM 17374]
Length = 555
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PL + + + L+ SP + D + A +E V PEH+H + LT SL+ A + G+ T
Sbjct: 5 KPLVIQSDKTLLLDVHSPFAQECRDSITAFSELVKSPEHVHTFLLTPLSLWNANAAGMTT 64
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYG 156
DI+ L+ S+ +P+ + FI + +G
Sbjct: 65 EDIMGRLRTWSRYDIPEPVSYFITDISARFG 95
>gi|67920111|ref|ZP_00513631.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
gi|67857595|gb|EAM52834.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
Length = 555
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + I LE +P A + + AE + PEH+H Y+LT S++ A + GL
Sbjct: 9 LIVQSDRTILLEVHAPTAGAAREAIAPFAELIKSPEHVHTYRLTPLSIWNARAAGLGVEQ 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA-EVLQKLL 181
+++ L++ +K +P I+E I YG +L + +F+ A E L +LL
Sbjct: 69 MVKALQQYTKYPLPSSIIEEIETLGRRYGLTRLFKSDDGFFLILKVADEALAELL 123
>gi|433543346|ref|ZP_20499755.1| ATP-dependent helicase [Brevibacillus agri BAB-2500]
gi|432185347|gb|ELK42839.1| ATP-dependent helicase [Brevibacillus agri BAB-2500]
Length = 554
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M +PD P+ V + I LE+ P + A + E + PE+IH Y++T SL+
Sbjct: 1 MSYRPD---LPMIVQSDRTILLETQHPQFAEARQAISGFCELLKSPEYIHTYRMTPLSLW 57
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
A + G++ H++ L SK VP IV+ I+ YG ++L
Sbjct: 58 NAAASGMQPHEVTGILGAYSKYGVPPTIVKEIDETMRKYGLIRL 101
>gi|421871952|ref|ZP_16303572.1| type III restriction enzyme, res subunit [Brevibacillus
laterosporus GI-9]
gi|372459209|emb|CCF13121.1| type III restriction enzyme, res subunit [Brevibacillus
laterosporus GI-9]
Length = 563
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I +E +P++ A + AE + PE+IH Y+LT SL+ A + L+
Sbjct: 8 PLIVQSDRSILVEVENPLFDEARQAISGFAELIKSPEYIHTYRLTPLSLWNAAASQLQAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESP----FAEVLQKLLK 182
I+E L R SK +P + + + YG +++ ++ + S AEV+
Sbjct: 68 QILETLSRYSKYGLPPSVADEVKRAFSRYGLIQMHTYEDQIGLTSVDPLILAEVMGYQSM 127
Query: 183 DPVIQDCR---LRRDTEDSQTLINQADKKLKAP 212
P I++ R L S+ L+ QA KL P
Sbjct: 128 QPYIEEKRSESLYILKPYSRGLVKQALIKLGYP 160
>gi|339011047|ref|ZP_08643615.1| putative ATP-dependent helicase [Brevibacillus laterosporus LMG
15441]
gi|338772035|gb|EGP31570.1| putative ATP-dependent helicase [Brevibacillus laterosporus LMG
15441]
Length = 563
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I +E +P++ A + AE + PE+IH Y+LT SL+ A + L+
Sbjct: 8 PLIVQSDRSILVEVENPLFDEARQAISGFAELIKSPEYIHTYRLTPLSLWNAAASQLQAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESP----FAEVLQKLLK 182
I+E L R SK +P + + + YG +++ ++ + S AEV+
Sbjct: 68 QILETLSRYSKYGLPPSVADEVKRAFSRYGLIQMHTYEDQIGLTSVDPLILAEVMGYQSM 127
Query: 183 DPVIQDCR---LRRDTEDSQTLINQADKKLKAP 212
P I++ R L S+ L+ QA KL P
Sbjct: 128 QPYIEEKRSESLYILKPYSRGLVKQALIKLGYP 160
>gi|416374985|ref|ZP_11683267.1| DNA repair helicase [Crocosphaera watsonii WH 0003]
gi|357266616|gb|EHJ15220.1| DNA repair helicase [Crocosphaera watsonii WH 0003]
Length = 555
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + I LE +P A + + AE + PEH+H Y+LT S++ A + GL
Sbjct: 9 LIVQSDRTILLEVHAPTAGAAREAIAPFAELIKSPEHVHTYRLTPLSIWNARAAGLGVEQ 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFA-EVLQKLL 181
++ L++ +K +P I+E I YG +L + +F+ A E L +LL
Sbjct: 69 MVLALQQYTKYPLPSSIIEEIETLGRRYGLTRLFKSEDGFFLILKVADEALAELL 123
>gi|15639371|ref|NP_218820.1| DNA repair helicase, [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025613|ref|YP_001933385.1| DNA repair helicase [Treponema pallidum subsp. pallidum SS14]
gi|378972887|ref|YP_005221491.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973954|ref|YP_005222560.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378975016|ref|YP_005223624.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981863|ref|YP_005230168.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421904|ref|YP_005631263.1| DNA or RNA helicase of superfamily II [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502258|ref|YP_006869702.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|3322660|gb|AAC65366.1| DNA repair helicase, putative [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018188|gb|ACD70806.1| possible DNA repair helicase [Treponema pallidum subsp. pallidum
SS14]
gi|291059770|gb|ADD72505.1| DNA or RNA helicase of superfamily II [Treponema pallidum subsp.
pallidum str. Chicago]
gi|374677210|gb|AEZ57503.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678280|gb|AEZ58572.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679349|gb|AEZ59640.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680414|gb|AEZ60704.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
DAL-1]
gi|408475621|gb|AFU66386.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 606
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PL + + I L+ +P A L++ AE PEH+H Y+LT SL+ A S G
Sbjct: 6 KPLIIQADRSILLDVHAPEAVAARKALVSFAELEKSPEHLHSYRLTPLSLWNAASAGFSP 65
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
I + L R S+ + P +++++ YGK++L
Sbjct: 66 QMIAQTLTRFSRFTPPQTVLDWVVDIMSRYGKIRL 100
>gi|224094729|ref|XP_002334791.1| predicted protein [Populus trichocarpa]
gi|222874674|gb|EEF11805.1| predicted protein [Populus trichocarpa]
Length = 86
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 6/64 (9%)
Query: 33 KKNVEKDDAAVPE---DEF---GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYR 86
+ +V +DDA PE D+F G K +++ LKPDH +RPLW +G IFLE+FS +Y+
Sbjct: 23 RSSVAEDDAFYPEEAGDDFRDEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSSLYK 82
Query: 87 HAHD 90
A+D
Sbjct: 83 QAYD 86
>gi|338706347|ref|YP_004673115.1| putative DNA repair helicase [Treponema paraluiscuniculi Cuniculi
A]
gi|335344408|gb|AEH40324.1| probable DNA repair helicase [Treponema paraluiscuniculi Cuniculi
A]
Length = 606
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PL + + I L+ +P A L++ AE PEH+H Y+LT SL+ A S G
Sbjct: 6 KPLIIQADRSILLDVHAPEAVAARKALVSFAELEKSPEHLHSYRLTPLSLWNAASAGFSP 65
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
I + L R S+ + P +++++ YGK++L
Sbjct: 66 QMIAQTLTRFSRFTPPQTVLDWVVDIMSRYGKIRL 100
>gi|254414041|ref|ZP_05027809.1| Type III restriction enzyme, res subunit family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196179177|gb|EDX74173.1| Type III restriction enzyme, res subunit family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 604
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + I LE SP A + AE + PEHIH Y+LT S++ A + GL
Sbjct: 9 LIVQSDRTILLEVHSPKADGARVAIAPFAELIKSPEHIHTYRLTPLSIWNARAAGLAVEG 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIE-----SPFAEVL 177
++ L SK VP+ +++ I YG ++ K + +F+E P AE+L
Sbjct: 69 MLTALHHYSKYPVPEAVIQEIRTLGERYGLTRIERKDDPFFLELNVADPPLAELL 123
>gi|384108565|ref|ZP_10009458.1| DNA or RNA helicases of superfamily II [Treponema sp. JC4]
gi|383869952|gb|EID85558.1| DNA or RNA helicases of superfamily II [Treponema sp. JC4]
Length = 594
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + L+ +P+ + LI AE PEH+H Y+L+ SL+ A S G
Sbjct: 6 PLIVQSDRTLLLDVHAPLAEECRNALIPFAELEKSPEHLHTYRLSPLSLWNAASAGFSAD 65
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
D + L++ ++ VP I ++I + +G ++L+
Sbjct: 66 DAVAVLEKYARYDVPQSIPQWIQEISNRFGTLRLI 100
>gi|398813510|ref|ZP_10572205.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398038487|gb|EJL31647.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 554
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M +PD PL V + I LE+ P++ A + E + PE+IH Y++T SL+
Sbjct: 1 MSYRPD---LPLIVQSDRTILLETQHPLFPEARQAISGFTELIKNPEYIHTYRITPLSLW 57
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
A + GL + ++ + L SK VP IV+ I YG +L
Sbjct: 58 NAAASGLTSQEVTDVLGSYSKYGVPPTIVKEIEDTMRKYGLFRL 101
>gi|381181009|ref|ZP_09889845.1| helicase domain protein [Treponema saccharophilum DSM 2985]
gi|380767014|gb|EIC01017.1| helicase domain protein [Treponema saccharophilum DSM 2985]
Length = 614
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I L+ +P L+ AE PEH H YKLT SL+ A G +
Sbjct: 14 PLIVQSDRTILLDVHAPRADECRHALVPFAELEKSPEHFHTYKLTPLSLWNAAGAGFKPE 73
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
D + L SK VP + +I+ +GK++LV
Sbjct: 74 DAVRVLNEYSKYDVPQSVAVWISETAGRFGKLRLV 108
>gi|452991606|emb|CCQ97028.1| putative ATP-dependent helicase [Clostridium ultunense Esp]
Length = 580
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL + + + LE +P++ D + A+ + PE+IH Y++T SL+ A S G+
Sbjct: 9 PLIIQSDRTLLLEVANPLFAEVRDAISPFADLLKSPEYIHTYRITPLSLWNAASTGMGEG 68
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI 169
+I+ L++ +K VP+ I + I +G ++L+ R ++
Sbjct: 69 EILGILEKYAKYGVPEMIRKEIEDTVRRFGLLQLISDEGRLYL 111
>gi|332297020|ref|YP_004438942.1| helicase domain-containing protein [Treponema brennaborense DSM
12168]
gi|332180123|gb|AEE15811.1| helicase domain-containing protein [Treponema brennaborense DSM
12168]
Length = 638
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + L+ +P LI AE PEH+H Y+LT SL+ A S G
Sbjct: 6 PLIVQSDRTLLLDVHAPRAAECRASLIPFAELERSPEHLHTYRLTPLSLWNAASAGFSPE 65
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
D + L ++ VP + +I +GK++LV
Sbjct: 66 DAVAVLNEFARYDVPQSVTMWIRETAGRFGKLRLV 100
>gi|168701354|ref|ZP_02733631.1| DNA repair helicase [Gemmata obscuriglobus UQM 2246]
Length = 600
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ P V + + +E +P Y A D + AE PEHIH Y+++ SL+ A + G
Sbjct: 37 TNPFIVQSDRSVLVEVDNPKYTEARDAIAPFAELEKSPEHIHTYRISNLSLWNAAAAGFS 96
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L++ +K +P I I YG+VKL
Sbjct: 97 ADEVVGVLQKYTKFPIPQNIPTDIAETVSRYGRVKL 132
>gi|226313631|ref|YP_002773525.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
gi|226096579|dbj|BAH45021.1| putative ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
Length = 557
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE+ P + A + E + PE+IH Y++T SL+ A + GL +
Sbjct: 11 PLIVQSDRTILLETQHPFFHEARQAISGFTELIKNPEYIHTYRITPLSLWNAAASGLTSQ 70
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
++ + L SK VP IV+ I YG +L
Sbjct: 71 EVTDVLGNYSKYGVPPTIVKEIEDTMRKYGLFRL 104
>gi|359686072|ref|ZP_09256073.1| superfamily II DNA/RNA helicase [Leptospira santarosai str.
2000030832]
Length = 557
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ LE +P + + AE PE++H Y+++ SL+ A S+ + +I+E L++
Sbjct: 1 MLLEVDNPEFETCQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMTADEIVECLEKF 60
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKLV 161
S+ SVP IV I YGKVKLV
Sbjct: 61 SRYSVPKNIVNEIREQISRYGKVKLV 86
>gi|359726479|ref|ZP_09265175.1| superfamily II DNA/RNA helicase [Leptospira weilii str. 2006001855]
Length = 557
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ LE +P + + AE PE++H Y+++ SL+ A S+ + +I+E L++
Sbjct: 1 MLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMTADEIVECLEKF 60
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKLV 161
S+ SVP IV I YGKVKLV
Sbjct: 61 SRYSVPKNIVNEIREQISRYGKVKLV 86
>gi|374815582|ref|ZP_09719319.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-1]
Length = 579
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ PL V + + L+ +P A ++ AE PEHIH +++T SL+ A S G
Sbjct: 6 ANPLIVQSDRTLLLDVHAPKAEEARAAVMPFAELEKSPEHIHTFRITPLSLWNAASAGFT 65
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
D+ L S+ VP I+E + YGK++LV
Sbjct: 66 PADVAAALDAYSRYPVPQSILEGFSDTMARYGKIRLV 102
>gi|389602007|ref|XP_001566408.2| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505277|emb|CAM39916.2| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1108
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
+ +G+IF+E P Y H DFLI+ EPV R +H+ +Y++ + SL AA + G + +I
Sbjct: 3 IGDSGNIFVEKAHPAYAHVIDFLISCCEPVSRTQHMEQYRMDSSSLSAATAEGTYSLAMI 62
Query: 130 EYLKR 134
E + R
Sbjct: 63 EVILR 67
>gi|401416016|ref|XP_003872503.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488727|emb|CBZ23974.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1103
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
+ +G+IF+E P Y H DFLI+ EPV R +H+ +Y++ + SL AA + G + +I
Sbjct: 3 IGDSGNIFVEKAHPAYAHVIDFLISCCEPVSRTQHMEQYRMDSSSLSAATAEGTYSLAMI 62
Query: 130 EYLKR 134
E + R
Sbjct: 63 ENVLR 67
>gi|325971054|ref|YP_004247245.1| type III restriction protein res subunit [Sphaerochaeta globus str.
Buddy]
gi|324026292|gb|ADY13051.1| type III restriction protein res subunit [Sphaerochaeta globus str.
Buddy]
Length = 553
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLC 151
L+ E V PEH+H Y L+ SL+ A S G +I+ L R S+ VP+ I+ ++N
Sbjct: 30 LVRFCELVKSPEHMHTYALSPISLWNAASSGFPVASVIDCLNRWSRFPVPESILFYVNDM 89
Query: 152 TLSYGKVKLVL----KHNRYFIES 171
+GKV+L ++ + F+ES
Sbjct: 90 ASRWGKVRLTEYEDPRYYQLFVES 113
>gi|355686454|gb|AER98063.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mustela putorius furo]
Length = 70
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 70
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWV
Sbjct: 27 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWV 70
>gi|168069825|ref|XP_001786592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162660928|gb|EDQ48596.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 589
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ LE P + A L AE V P + Y++T SL+ A S+G ++++ L +
Sbjct: 15 VLLECGHPGFEEARGKLAHFAELVKSPSAFYTYRITPLSLWNAASLGWTAEEVVDALASI 74
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKL---VLKHNRYFIESPFAEVLQKLLKDPVIQDCRLR 192
S+ VP +++ I YGK+++ + + + + ++L ++L P +Q LR
Sbjct: 75 SRWEVPSALIQDIRSLVGRYGKLRIEAGKAEAGKLRLTASDPQLLDEVLAIPAVQASGLR 134
Query: 193 R 193
R
Sbjct: 135 R 135
>gi|428317195|ref|YP_007115077.1| type III restriction protein res subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428240875|gb|AFZ06661.1| type III restriction protein res subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 561
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + I LE +P + A + + AE + PEHIH Y++T S++ A + G+ +
Sbjct: 9 LIVQSDRSILLEVHAPTAQQAREAIAPFAELIKSPEHIHTYRITPLSVWNARAAGMPVEE 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYG 156
I L+ +K +P+ + + I L YG
Sbjct: 69 AIAALRNYAKYPIPESVAQEIELLGARYG 97
>gi|430750411|ref|YP_007213319.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430734376|gb|AGA58321.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 568
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + L+ P A + + AE V RP +H Y++T S++ A + GL
Sbjct: 7 PLIVRSDASVLLDVRHPDAEQARESIARFAELVKRPGDLHTYRITPLSVWNAAASGLTAD 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
++ + L S+ VP G+++ I YGK++L
Sbjct: 67 EMTDDLIAFSRYDVPAGLIDRIGTWAGRYGKIRL 100
>gi|385652085|ref|ZP_10046638.1| DNA repair helicase [Leucobacter chromiiresistens JG 31]
Length = 554
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T L+ A + G +
Sbjct: 5 PLIVQSDHTVLLEVAHPDAEDARHALAVFAELERAPEHIHTYRITRLGLWNARAAGHTSE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+I+E L R +K VP G+ I YG++ +
Sbjct: 65 EILETLNRYAKFPVPSGVANEIADTMRRYGRLTI 98
>gi|359689912|ref|ZP_09259913.1| ATP-dependent DNA helicase [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418749034|ref|ZP_13305326.1| type III restriction enzyme, res subunit [Leptospira licerasiae
str. MMD4847]
gi|404276103|gb|EJZ43417.1| type III restriction enzyme, res subunit [Leptospira licerasiae
str. MMD4847]
Length = 552
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ LE +P + + AE PE++H Y+++ SL+ A S+ + +I+E L++
Sbjct: 1 MLLEVDNPEFEACQLVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMSADEIVECLEKY 60
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
S+ SVP +V I YGKVKLV + N
Sbjct: 61 SRYSVPKNVVNEIREQIGRYGKVKLVKEEN 90
>gi|403378912|ref|ZP_10920969.1| putative ATP-dependent helicase [Paenibacillus sp. JC66]
Length = 566
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL++ + I LE P + D L A+ V P +IH YKLT SL+ A++ G+
Sbjct: 9 PLFILNDFTILLEVDHPDFEAVRDQLSRFADLVKSPANIHTYKLTPLSLWNAMACGMRPG 68
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
++I++L SK +P I I T YG +KL
Sbjct: 69 EMIDFLAEESKFGIPTSIRSEILDITDRYGLLKL 102
>gi|334134816|ref|ZP_08508318.1| helicase C-terminal domain protein [Paenibacillus sp. HGF7]
gi|333607660|gb|EGL18972.1| helicase C-terminal domain protein [Paenibacillus sp. HGF7]
Length = 565
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVP----DGIVEF 147
L A+ V P+H+H YK+T SL+ A + GL + DII +LK+ SK + D ++
Sbjct: 33 LALFADLVKSPKHLHTYKITPLSLWNAAASGLRSGDIIRFLKQESKNGISRRTEDELLSI 92
Query: 148 INLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
++ YG ++LV + +++S E+L KL
Sbjct: 93 LD----RYGLLRLVSDKGKLYLQSTDTELLAKL 121
>gi|389593769|ref|XP_003722133.1| putative DNA repair helicase [Leishmania major strain Friedlin]
gi|321438631|emb|CBZ12390.1| putative DNA repair helicase [Leishmania major strain Friedlin]
Length = 1106
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
+ +G+IF+E P Y H DFLI+ EPV R +H+ +Y++ + SL +A + G + +I
Sbjct: 3 IGDSGNIFVEKAHPAYAHVIDFLISCCEPVSRTQHMEQYRMDSSSLSSATAEGTYSLAMI 62
Query: 130 EYLKR 134
E + R
Sbjct: 63 ENVLR 67
>gi|261327256|emb|CBH10232.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei gambiense DAL972]
Length = 938
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET---- 125
+ P G IF+ P Y H DFL A EPVCR ++ EY ++ SL AA + G +
Sbjct: 3 LGPGGRIFINHGHPAYPHLMDFLTACCEPVCRTLYVSEYTISPSSLSAATAEGTYSMEMV 62
Query: 126 HDIIEYLKRLSKTSVP 141
++I Y + + +P
Sbjct: 63 RNVIRYFRLDEQQQIP 78
>gi|72387351|ref|XP_844100.1| DNA repair helicase and transcription factor protein [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62360608|gb|AAX81019.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei]
gi|70800632|gb|AAZ10541.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 938
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET---- 125
+ P G IF+ P Y H DFL A EPVCR ++ EY ++ SL AA + G +
Sbjct: 3 LGPGGRIFINHGHPAYPHLMDFLTACCEPVCRTLYVSEYTISPSSLSAATAEGTYSMEMV 62
Query: 126 HDIIEYLKRLSKTSVP 141
++I Y + + +P
Sbjct: 63 RNVIRYFRLDEQQQIP 78
>gi|427706036|ref|YP_007048413.1| type III restriction protein res subunit [Nostoc sp. PCC 7107]
gi|427358541|gb|AFY41263.1| type III restriction protein res subunit [Nostoc sp. PCC 7107]
Length = 556
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + I LE SP A + + AE + PEHIH Y++T S++ A + GL+
Sbjct: 9 LIVQSDRTILLEVHSPTAAKAREAIAPFAELIKSPEHIHTYQITPLSIWNARAAGLQVEA 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI---ESPFAEVLQK 179
++ L+ +K +P+ + + I YG + + + + P AE+L +
Sbjct: 69 MVGALRDYAKYPIPEAVAQEITTLGSRYGLTVIERDGDSLLLRISDRPLAELLSR 123
>gi|434385348|ref|YP_007095959.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
gi|428016338|gb|AFY92432.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
Length = 556
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M PD+ L + + + LE SP A D + AE V PEHIH Y+++ S++
Sbjct: 1 MSYIPDNA---LIIQSDRSVLLEVHSPQANAARDAIAPFAELVKSPEHIHTYQISPLSIW 57
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF---IESPF 173
A + G+ ++I L+ SK +PD I + + YG + + ++ P
Sbjct: 58 NARAAGMPVVEMIAALRSYSKYPMPDAIAQELETLGSRYGLTTIDRVDDTLLLTMVDLPL 117
Query: 174 AEVLQK 179
AE+L +
Sbjct: 118 AELLSR 123
>gi|398018627|ref|XP_003862478.1| DNA repair helicase, putative [Leishmania donovani]
gi|322500708|emb|CBZ35785.1| DNA repair helicase, putative [Leishmania donovani]
Length = 1106
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
+ +G+IF+E P Y H DFLI+ EPV R +++ +Y++ + SL AA + G + +I
Sbjct: 3 IGDSGNIFVEKAHPAYTHVIDFLISCCEPVSRTQYMEQYRMDSSSLSAATAEGTYSLAMI 62
Query: 130 EYLKR 134
E + R
Sbjct: 63 ESVLR 67
>gi|339898776|ref|XP_001466580.2| putative DNA repair helicase [Leishmania infantum JPCM5]
gi|321398503|emb|CAM69619.2| putative DNA repair helicase [Leishmania infantum JPCM5]
Length = 1106
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
+ +G+IF+E P Y H DFLI+ EPV R +++ +Y++ + SL AA + G + +I
Sbjct: 3 IGDSGNIFVEKAHPAYTHVIDFLISCCEPVSRTQYMEQYRMDSSSLSAATAEGTYSLAMI 62
Query: 130 EYLKR 134
E + R
Sbjct: 63 ESVLR 67
>gi|398345432|ref|ZP_10530135.1| DNA or RNA helicase [Leptospira inadai serovar Lyme str. 10]
Length = 553
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ LE +P + + AE PE++H Y+++ SL+ A S+ + +I++ L++
Sbjct: 1 MLLEVDNPEFEVCQTVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMTADEIVQCLEQY 60
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
S+ SVP ++ I YGKVKLV + N
Sbjct: 61 SRYSVPKNVINEIREQIGRYGKVKLVKEEN 90
>gi|17232195|ref|NP_488743.1| DNA repair helicase [Nostoc sp. PCC 7120]
gi|17133840|dbj|BAB76402.1| DNA repair helicase [Nostoc sp. PCC 7120]
Length = 563
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + I LE SP A + + AE + PEHIH Y++T S++ A + G++
Sbjct: 9 LIVQSDRTILLEVHSPTAAKAREAIAPFAELIKSPEHIHTYQITPLSIWNARAAGMQVEA 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYG 156
++ L+ +K +P+ + + I+ YG
Sbjct: 69 MVAALRDYAKYPIPEAVAQEISTLGERYG 97
>gi|392403571|ref|YP_006440183.1| helicase domain-containing protein [Turneriella parva DSM 21527]
gi|390611525|gb|AFM12677.1| helicase domain-containing protein [Turneriella parva DSM 21527]
Length = 583
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PL V + + LE P++ +A + AE PE++H Y++T SL+ A + L+
Sbjct: 7 KPLIVQSDKTLLLEVDHPMFENARSEISKFAELEKSPEYLHTYRITPLSLWNAAASKLKA 66
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
I++ L + SK VP + I YGK+KL
Sbjct: 67 EQIVDTLYKYSKYPVPQAVSADIYTQIGRYGKLKL 101
>gi|307718024|ref|YP_003873556.1| DNA-helicase [Spirochaeta thermophila DSM 6192]
gi|306531749|gb|ADN01283.1| putative DNA-helicase [Spirochaeta thermophila DSM 6192]
Length = 588
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S PL V +G I LE P A + + E + PE+IH Y++T SL+ A S GL
Sbjct: 27 SGPLIVQSDGTILLEVSHPEADEARNAITPFTELLTSPEYIHTYRITPISLWNAASAGLT 86
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
I L R ++ VP +++ I G + L+
Sbjct: 87 YDQITTRLSRYARYPVPPTLLDTIRHTLKRAGTLTLL 123
>gi|326773086|ref|ZP_08232370.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
gi|326637718|gb|EGE38620.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
Length = 564
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
P PL V + + LE P A + A AE PEHIH Y++T +L+ A +
Sbjct: 13 PSAPDGPLIVQSDKSVLLEVAHPQAGQARRAIAAFAELERAPEHIHTYRITPLALWNARA 72
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
GL+ ++ L S+ VP ++ I YG+++L+
Sbjct: 73 AGLDAETVVHTLITYSRFPVPHALLTEIAETMSRYGRLQLL 113
>gi|365826774|ref|ZP_09368669.1| hypothetical protein HMPREF0975_00452 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265743|gb|EHM95485.1| hypothetical protein HMPREF0975_00452 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 651
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + A AE PEHIH Y++T +L+ A + GL+
Sbjct: 110 PLIVQSDKSVLLEVARPGAGEARRAIAAFAELERAPEHIHTYRITPLALWNARAAGLDAE 169
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ I YG+++L+
Sbjct: 170 TVVHTLITYSRFPVPHALLTEIAETMSRYGRLQLI 204
>gi|320531739|ref|ZP_08032671.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320136044|gb|EFW28060.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 560
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
P PL V + + LE P A + A AE PEHIH Y++T +L+ A +
Sbjct: 13 PSAPDGPLIVQSDKSVLLEVAHPQAGQARRAIAAFAELERAPEHIHTYRITPLALWNARA 72
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
GL+ ++ L S+ VP ++ I YG+++L+
Sbjct: 73 AGLDAETVVHTLITYSRFPVPHALLTEIAETMSRYGRLQLL 113
>gi|383791881|ref|YP_005476455.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383108415|gb|AFG38748.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 568
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 63 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVG 122
H + PL V +G I L+ P A + E + PEH+H Y++T S++ S G
Sbjct: 15 HMNTPLIVQSDGSILLDVHDPGADEARSAIAGFTELIKSPEHMHTYRITPLSVWNGASAG 74
Query: 123 LETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
L+ +I + L S+ VP I+ + YG + +
Sbjct: 75 LQLAEIEQSLSGYSRFPVPGNILFQLRDLYSRYGVITM 112
>gi|19552043|ref|NP_600045.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389706|ref|YP_225108.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|145294985|ref|YP_001137806.1| hypothetical protein cgR_0930 [Corynebacterium glutamicum R]
gi|417972067|ref|ZP_12612982.1| hypothetical protein CgS9114_13620 [Corynebacterium glutamicum
S9114]
gi|418245902|ref|ZP_12872302.1| hypothetical protein KIQ_10406 [Corynebacterium glutamicum ATCC
14067]
gi|21323582|dbj|BAB98209.1| DNA or RNA helicases of superfamily II [Corynebacterium glutamicum
ATCC 13032]
gi|41325041|emb|CAF19522.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum
ATCC 13032]
gi|140844905|dbj|BAF53904.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043556|gb|EGV39245.1| hypothetical protein CgS9114_13620 [Corynebacterium glutamicum
S9114]
gi|354509978|gb|EHE82907.1| hypothetical protein KIQ_10406 [Corynebacterium glutamicum ATCC
14067]
gi|385142963|emb|CCH24002.1| putative helicase [Corynebacterium glutamicum K051]
Length = 557
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPQAGEARIALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L+R S+ VP ++ I YG+V+L
Sbjct: 67 QVVDMLERFSRFPVPQALLIDIAETMSRYGRVRL 100
>gi|325066723|ref|ZP_08125396.1| type III restriction protein res subunit [Actinomyces oris K20]
Length = 564
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
P PL V + + LE P A + A AE PEHIH Y++T +L+ A +
Sbjct: 13 PSAPDGPLIVQSDKSVLLEVAHPQAGQARRAIAAFAELERAPEHIHTYRITPLALWNARA 72
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
GL+ ++ L S+ VP ++ I YG+++L+
Sbjct: 73 AGLDAETVVHTLITYSRFPVPHALLTEIAETMSRYGRLQLL 113
>gi|302865000|ref|YP_003833637.1| helicase domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|302567859|gb|ADL44061.1| helicase domain protein [Micromonospora aurantiaca ATCC 27029]
Length = 596
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 43 VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRP 102
VP DEF +RA M PL V + + LE P + + AE P
Sbjct: 19 VPGDEFPGSGFRA-MREDAGVSGGPLIVQSDKTLLLEVDHPDAQACRMAIAPFAELERSP 77
Query: 103 EHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
EH+H Y+LT L+ A + G + +++ L + S+ VP G++ + YG+++L
Sbjct: 78 EHVHTYRLTPLGLWNARAAGHDAEGVVDSLIKYSRYPVPHGLLVDVAETMDRYGRLQL 135
>gi|427716121|ref|YP_007064115.1| type III restriction protein res subunit [Calothrix sp. PCC 7507]
gi|427348557|gb|AFY31281.1| type III restriction protein res subunit [Calothrix sp. PCC 7507]
Length = 556
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + I LE +P + A + + E + PEHIH Y ++ S++ A + G+E
Sbjct: 9 LIVQSDRTILLEIHAPTAQRAREAIAPFTELIKSPEHIHTYSISPLSIWNARAAGMEVAA 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFI---ESPFAEVLQK 179
+++ L+ +K +P+ + + I YG + N + + P AE+L +
Sbjct: 69 MVDALRNYAKYPIPEAVAQEIVTLGQRYGLTVIERDENSLILRMSDHPLAELLSR 123
>gi|315501497|ref|YP_004080384.1| helicase domain-containing protein [Micromonospora sp. L5]
gi|315408116|gb|ADU06233.1| helicase domain protein [Micromonospora sp. L5]
Length = 615
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 43 VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRP 102
VP DEF +RA M PL V + + LE P + + AE P
Sbjct: 38 VPGDEFPGSGFRA-MREDAGVSGGPLIVQSDKTLLLEVDHPDAQACRMAIAPFAELERSP 96
Query: 103 EHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
EH+H Y+LT L+ A + G + +++ L + S+ VP G++ + YG+++L
Sbjct: 97 EHVHTYRLTPLGLWNARAAGHDAEGVVDSLIKYSRYPVPHGLLVDVAETMDRYGRLQL 154
>gi|145479837|ref|XP_001425941.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393013|emb|CAK58543.1| unnamed protein product [Paramecium tetraurelia]
Length = 645
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
I LE F A + LI AEP +I + +T YSLY A+++G I + RL
Sbjct: 28 IILEKFHRDAAAAEETLIQFAEPSSTTTNIQTFIITFYSLYTAMTLGWNEERIKSEIDRL 87
Query: 136 SKTS-VPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
+K +P I +FI T + + L+ + Y+I+ ++LQ+L
Sbjct: 88 AKNERIPKDITDFIEKNTQYFNRAYFYLEKDSYYIDIEM-KLLQEL 132
>gi|329946580|ref|ZP_08294045.1| helicase protein [Actinomyces sp. oral taxon 170 str. F0386]
gi|328527084|gb|EGF54093.1| helicase protein [Actinomyces sp. oral taxon 170 str. F0386]
Length = 560
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + A AE PEHIH Y++T +L+ A + GL+
Sbjct: 19 PLIVQSDKSVLLEVARPGAGEARRAIAAFAELERAPEHIHTYRITPLALWNARAAGLDAE 78
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ I YG+++L+
Sbjct: 79 TVVHTLITYSRFPVPHALLTEIAETMSRYGRLQLL 113
>gi|343524024|ref|ZP_08760984.1| type III restriction enzyme, res subunit [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343399005|gb|EGV11530.1| type III restriction enzyme, res subunit [Actinomyces sp. oral
taxon 175 str. F0384]
Length = 564
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + A AE PEHIH Y++T +L+ A + GL+
Sbjct: 19 PLIVQSDKSVLLEVAHPQAGQARRAIAAFAELERAPEHIHTYRITPLALWNARAAGLDAE 78
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ I YG+++L+
Sbjct: 79 TVVHTLITYSRFPVPHAMLTEIAETMSRYGRLQLL 113
>gi|386346047|ref|YP_006044296.1| type III restriction protein res subunit [Spirochaeta thermophila
DSM 6578]
gi|339411014|gb|AEJ60579.1| type III restriction protein res subunit [Spirochaeta thermophila
DSM 6578]
Length = 563
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
P V +G I LE P A + + E + PE+IH Y++T SL+ A S GL
Sbjct: 4 PFIVQSDGTILLEVSHPEADEARNAITPFTELLTSPEYIHTYRITPISLWNAASAGLTYD 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
I E L R ++ VP +++ I G + L+
Sbjct: 64 QIAERLSRYARYPVPPTLLDTIRHTLERAGTLTLL 98
>gi|227496346|ref|ZP_03926637.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226834122|gb|EEH66505.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 559
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEHIH Y++T +L+ A + GL+
Sbjct: 10 PLIVQSDKTVLLEVSHPASADARRAIAPFAELERAPEHIHTYRITPLALWNARAAGLDAE 69
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK-HNRYFIESPFAEVLQKLLK 182
+I L S+ VP ++ I YG+++LV +R + + VL+++++
Sbjct: 70 TVIHVLITYSRFPVPHSLLTEIAETMGRYGRLQLVTDPAHRLVLHATDVPVLEEVMR 126
>gi|74026236|ref|XP_829684.1| DNA repair helicase and transcription factor protein [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|70835070|gb|EAN80572.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 777
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYL--- 132
+F E+F P + + FL IAEPV R +HEY++T +SL AA S + ++I++L
Sbjct: 18 LFAEAFRPSFANIQGFLTTIAEPVSRLSLMHEYRMTYFSLGAAASASISVSEVIQFLDDH 77
Query: 133 ----KRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
+ S + + F + ++V+ +R +E + LLKD V++
Sbjct: 78 VYFFRDKCFASYRESVCAFAEMYMSRCNLARVVIDESRTLLECKDIVTAKTLLKDRVVRS 137
>gi|261335713|emb|CBH18707.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei gambiense DAL972]
Length = 777
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYL--- 132
+F E+F P + + FL IAEPV R +HEY++T +SL AA S + ++I++L
Sbjct: 18 LFAEAFRPSFANIQGFLTTIAEPVSRLSLMHEYRMTYFSLGAAASASISVSEVIQFLDGH 77
Query: 133 ----KRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
+ S + + F + ++V+ +R +E + LLKD V++
Sbjct: 78 VYFFRDKCFASYRESVCAFAEMYMSRCNLARVVIDESRTLLECKDIVTAKTLLKDRVVRS 137
>gi|443309230|ref|ZP_21038971.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442780727|gb|ELR90879.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 562
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L + + + LE SP A D + AE + PEHIH Y+++ S++ A + G+ +
Sbjct: 9 LIIQSDRTVLLEVHSPRADAARDAISPFAELIKSPEHIHTYQISPLSVWNARAAGMPVSE 68
Query: 128 IIEYLKRLSKTSVPDGIVEFI-------NLCTLSYGKVKLVLKHNRYFIESPFAEVLQK 179
+I L+ +K S+P+ + + I L + G L+LK + P AE+L++
Sbjct: 69 MIAALRSHAKYSMPEAVAQEITSLGSRYGLTVIERGDGHLLLK----MADLPLAELLRR 123
>gi|342186621|emb|CCC96108.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 779
Score = 49.7 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLK-- 133
+ E+F V+ FL IAEPV R IHEY++T SL AVS + +++++L
Sbjct: 18 LLAEAFRTVFNDIQGFLTTIAEPVSRLSLIHEYRITHSSLGTAVSADISAAEVVQFLSEH 77
Query: 134 ---------RLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDP 184
R + V F C Y ++V+ R +E E LL+D
Sbjct: 78 VYFFNEEHFRPHRNRVE----LFAERCMSRYNLARIVIDDTRTMLECNDIETANILLRDL 133
Query: 185 VIQ 187
++
Sbjct: 134 TVR 136
>gi|288920789|ref|ZP_06415088.1| helicase domain protein [Frankia sp. EUN1f]
gi|288347808|gb|EFC82086.1| helicase domain protein [Frankia sp. EUN1f]
Length = 1446
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A + AE PEH+H Y++T +L+ A + G +
Sbjct: 906 PLIVQSDKTLLLEVDHPLAGRARASIAPFAELERSPEHVHTYRVTPLALWNARAAGHDAE 965
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ +VP+ ++ I YG+++L
Sbjct: 966 QVVDALVRYSRYAVPNAVLVDIADTMDRYGRLRL 999
>gi|336180242|ref|YP_004585617.1| helicase domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334861222|gb|AEH11696.1| helicase domain-containing protein [Frankia symbiont of Datisca
glomerata]
Length = 548
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPLAGDARAMIAPFAELERSPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ +VP ++ I YG+++L
Sbjct: 65 QVVDALVRFSRYAVPHALLVDIADTMDRYGRLRL 98
>gi|295696317|ref|YP_003589555.1| type III restriction protein res subunit [Kyrpidia tusciae DSM
2912]
gi|295411919|gb|ADG06411.1| type III restriction protein res subunit [Kyrpidia tusciae DSM
2912]
Length = 553
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V ++ P + A L AE + P + EY++T SL+ A ++G +
Sbjct: 5 PLVVGTERKVWCYMDHPRAKEAVRALAIFAELIKSPPQVREYRITELSLWHACALGWGSR 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY--FIESPFAEVLQKLLKDP 184
D++E L+ L+ +P + ++I +G + L NRY P +E ++ L+
Sbjct: 65 DVLETLRDLAMGPIPYPVQKWIVFTMNRWGGLVLEKSGNRYQLLARQPLSEDVRHALQQS 124
Query: 185 VIQD 188
+Q+
Sbjct: 125 GLQE 128
>gi|119961251|ref|YP_946800.1| ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
gi|403526036|ref|YP_006660923.1| DNA repair helicase RAD25 [Arthrobacter sp. Rue61a]
gi|119948110|gb|ABM07021.1| putative ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
gi|403228463|gb|AFR27885.1| putative DNA repair helicase RAD25 [Arthrobacter sp. Rue61a]
Length = 552
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE + A + A AE PEH+H Y+LT L+ A + GL+
Sbjct: 5 PLIVQSDKTILLEVDHELATEARHAIAAFAELERAPEHMHSYRLTPLGLWNARAAGLDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ + YG+++L
Sbjct: 65 QVLDTLLKYSRFPVPHALLIDVEETMSRYGRLRL 98
>gi|374586244|ref|ZP_09659336.1| helicase domain-containing protein [Leptonema illini DSM 21528]
gi|373875105|gb|EHQ07099.1| helicase domain-containing protein [Leptonema illini DSM 21528]
Length = 608
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ PL V + +FLE + + + AE PE++ Y+++A SL+ A S +
Sbjct: 5 NNPLIVQSDKTMFLEVDNDRFEDCRAVISRFAELEKSPEYMQTYRISALSLWNAASSRMT 64
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
DI+ L+ SK VP ++ I YGKVKLV
Sbjct: 65 ADDIVGALEDFSKYPVPKNVLHEIREQISRYGKVKLV 101
>gi|374315062|ref|YP_005061490.1| DNA/RNA helicase [Sphaerochaeta pleomorpha str. Grapes]
gi|359350706|gb|AEV28480.1| DNA/RNA helicase, superfamily II [Sphaerochaeta pleomorpha str.
Grapes]
Length = 553
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLC 151
L+ E + PEH+H Y L+A SL+ A S G+ + +I E L S+ + + ++ +IN
Sbjct: 30 LVRFCELIKSPEHVHTYALSAISLWNAASSGVTSEEICEKLTFWSRFPISESVLFYINDI 89
Query: 152 TLSYGKVKLV 161
+GKV L
Sbjct: 90 ASRFGKVVLT 99
>gi|400293000|ref|ZP_10794891.1| type III restriction enzyme, res subunit, partial [Actinomyces
naeslundii str. Howell 279]
gi|399901890|gb|EJN84754.1| type III restriction enzyme, res subunit, partial [Actinomyces
naeslundii str. Howell 279]
Length = 449
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + A AE PEHIH Y++T +L+ A + GL+
Sbjct: 19 PLIVQSDKSVLLEVAHPRAGEARRSIAAFAELERAPEHIHTYRITPLALWNARAAGLDAE 78
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ I YG+++L+
Sbjct: 79 TVVHTLITHSRFPVPHALLTEIAETMSRYGRLQLL 113
>gi|253575758|ref|ZP_04853093.1| type III restriction protein res subunit [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844801|gb|EES72814.1| type III restriction protein res subunit [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 564
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ LE P + A + L AE V P + H Y++T +L+ A S G++ ++E L+ +
Sbjct: 15 VLLEKEHPGFETAREQLSHYAELVKSPAYYHTYRITPLTLWHAASCGIDADRVLEELQSM 74
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKL 160
++ +P G E I +G++KL
Sbjct: 75 ARYGLPSGAAEDIRNWMGRFGQLKL 99
>gi|333918492|ref|YP_004492073.1| DNA repair helicase [Amycolicicoccus subflavus DQS3-9A1]
gi|333480713|gb|AEF39273.1| DNA repair helicase [Amycolicicoccus subflavus DQS3-9A1]
Length = 555
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEIEHPLSEQARSAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L R S+ VP ++ I YG+++LV KH
Sbjct: 65 QVVDALVRFSRYPVPQPLLVDIVDTIARYGRLQLV-KH 101
>gi|428303982|ref|YP_007140807.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428304297|ref|YP_007141122.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428245517|gb|AFZ11297.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428245832|gb|AFZ11612.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
Length = 556
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L + + + LE SP A + AE V PEHIH Y+++ S++ A + G+
Sbjct: 9 LIIQSDRSVLLEVHSPRADAARSAIAPFAELVKSPEHIHTYQVSPLSIWNARAAGMAVTG 68
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYG 156
+I+ L+ +K +PD I + I+ YG
Sbjct: 69 MIDALREYAKYPMPDAIAQEISSLGSRYG 97
>gi|227832581|ref|YP_002834288.1| helicase [Corynebacterium aurimucosum ATCC 700975]
gi|262182936|ref|ZP_06042357.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
gi|227453597|gb|ACP32350.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
Length = 545
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 4 PLIVQSDKTVLLEVDHPQADEARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L+ S+ VP ++ + YG+V+L+
Sbjct: 64 QVVDVLENYSRFPVPQALLIDVAETMSRYGRVRLL 98
>gi|392400142|ref|YP_006436742.1| UvrABC system protein B [Corynebacterium pseudotuberculosis Cp162]
gi|390531220|gb|AFM06949.1| UvrABC system protein B [Corynebacterium pseudotuberculosis Cp162]
Length = 549
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPQADTARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
I++ L+ S+ VP ++ + YG+V+L KH + +ES +L +L++
Sbjct: 67 GIVDVLETFSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESAEPAILAELIR 123
>gi|336324883|ref|YP_004604849.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
gi|336100865|gb|AEI08685.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
Length = 552
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + L AE PEH+H Y++T +L+ A + G +
Sbjct: 10 PLIVQSDKTVLLEIDHPAAGDARNALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 69
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L+R S+ VP ++ I YG++ L KH
Sbjct: 70 QVVDVLERYSRFPVPQPLLIDIADTMDRYGRLTLA-KH 106
>gi|420154767|ref|ZP_14661647.1| type III restriction enzyme, res subunit [Actinomyces massiliensis
F0489]
gi|394751515|gb|EJF35267.1| type III restriction enzyme, res subunit [Actinomyces massiliensis
F0489]
Length = 559
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEHIH Y++T +L+ A + GL+
Sbjct: 10 PLIVQSDKSVLLEVAHPGAEDARRDIAPFAELERAPEHIHTYRITPLALWNARAAGLDAE 69
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ I YG+++LV
Sbjct: 70 TVVHVLITYSRFPVPHALLTEIAETMDRYGRLQLV 104
>gi|338811579|ref|ZP_08623785.1| DEAD/DEAH box helicase-like protein [Acetonema longum DSM 6540]
gi|337276341|gb|EGO64772.1| DEAD/DEAH box helicase-like protein [Acetonema longum DSM 6540]
Length = 569
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
+ PL + + + E P + L A+ PEHIH Y++T SL+ A G +
Sbjct: 5 ANPLIIQSDFSVLAEVHHPEFETVRVDLAVFADLEKSPEHIHTYRITPLSLWNAACAGRK 64
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
II +L++ +K +PD I I YG VKL+
Sbjct: 65 PEAIITFLEQNAKFPLPDNIRREIGHYMARYGLVKLL 101
>gi|116669352|ref|YP_830285.1| helicase domain-containing protein [Arthrobacter sp. FB24]
gi|116609461|gb|ABK02185.1| helicase domain protein [Arthrobacter sp. FB24]
Length = 551
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE A + A AE PEH+H Y+LT L+ A + GL+
Sbjct: 5 PLIVQSDKTILLEVDHEQATEARHAIAAFAELERAPEHVHSYRLTPLGLWNARAAGLDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ I YG+++L
Sbjct: 65 RVLDTLLKYSRFPVPHSLLIDIEETMSRYGRLRL 98
>gi|430746995|ref|YP_007206124.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018715|gb|AGA30429.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 570
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S PL V + + LE +P++ A D + AE PEHIH Y+LT+ SL+ A + G+
Sbjct: 6 SNPLIVQGDRTVLLEVDNPLHAEARDAIAPFAELEKSPEHIHTYRLTSLSLWNAAAAGMT 65
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+I+ L SK +P + + YG+V L
Sbjct: 66 ADAMIDALGVYSKFPLPPNLGTDLRELVSRYGRVTL 101
>gi|315646161|ref|ZP_07899281.1| type III restriction protein res subunit [Paenibacillus vortex
V453]
gi|315278360|gb|EFU41676.1| type III restriction protein res subunit [Paenibacillus vortex
V453]
Length = 576
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
++P V + I LE+ + A + L A+ + P H Y+LT +L+ A + G+
Sbjct: 4 NKPCIVQRDRTILLETTHAEFEAAREQLAHYADLIKSPATFHTYRLTPLTLWNAAAAGMT 63
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV----LKHNRYFIESPFAEVLQKL 180
I L+ LS+ VP ++E + YG++ L+ L+H+ + S V+Q+L
Sbjct: 64 AEMICSSLQSLSRWDVPAALLEEVGRIVGRYGQLSLLPHPTLEHS-LLLRSEEESVMQEL 122
>gi|374324719|ref|YP_005077848.1| DNA or RNA helicase of superfamily II [Paenibacillus terrae
HPL-003]
gi|357203728|gb|AET61625.1| DNA or RNA helicase of superfamily II [Paenibacillus terrae
HPL-003]
Length = 602
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
+ PDH P V + + LE P HA L AE V P H Y +T SL+ A
Sbjct: 1 MNPDH---PCIVQRDFTVLLEIGLPASEHARSQLQVYAELVKSPSAFHTYHITPLSLWNA 57
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
++G D+ + L +S+ +P +++ I YG + L
Sbjct: 58 AALGWSAADVQKSLHSMSRWDIPRDLLKDIEQLVSRYGTLTL 99
>gi|25027447|ref|NP_737501.1| DNA helicase [Corynebacterium efficiens YS-314]
gi|259507148|ref|ZP_05750048.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
gi|23492729|dbj|BAC17701.1| putative DNA helicase [Corynebacterium efficiens YS-314]
gi|259165271|gb|EEW49825.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
Length = 557
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE+ + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLETGHDLAGEARAALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L+R S+ VP ++ + YG+V++
Sbjct: 67 QVVDVLERYSRFPVPQPLLVDVAETMSRYGRVRM 100
>gi|340059837|emb|CCC54234.1| putative DNA repair helicase and transcription factor protein,
fragment, partial [Trypanosoma vivax Y486]
Length = 584
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ E+F + +FL IAEP R +HEY++T +SL AVS + ++I++L
Sbjct: 45 VLAEAFRSSFPAIQNFLTTIAEPTSRLALLHEYRITRFSLGTAVSANISAAEVIKFLDNY 104
Query: 136 SKTSVPDGIVE-------FINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
+ +VE F+ Y ++V+ + + A + LL+D V++
Sbjct: 105 VYFFCDESLVEKRKRVCAFVETYMSRYNLARIVIDEEQTSVVCKDASTAKALLEDRVVRS 164
>gi|86743075|ref|YP_483475.1| helicase-like protein [Frankia sp. CcI3]
gi|86569937|gb|ABD13746.1| helicase-like [Frankia sp. CcI3]
Length = 545
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVEHPSAVEARSAIAPFAELERSPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ +VP ++ I YG+++L
Sbjct: 65 QVVDALVRFSRYAVPHALLVDIADTMDRYGRLRL 98
>gi|227501402|ref|ZP_03931451.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
gi|227077427|gb|EEI15390.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
Length = 541
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEH+H Y++T+ +L+ A + G +
Sbjct: 4 PLIVQSDKTVLLEVDHPDSAAARTALAPFAELERAPEHVHTYRITSLALWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L+ S+ VP ++ + YG+V+L
Sbjct: 64 QVVDVLETYSRFPVPQSLLVDVAETMSRYGRVRL 97
>gi|379714872|ref|YP_005303209.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 316]
gi|387138191|ref|YP_005694170.1| UvrABC system protein B [Corynebacterium pseudotuberculosis CIP
52.97]
gi|387140207|ref|YP_005696185.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1/06-A]
gi|389849940|ref|YP_006352175.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 258]
gi|349734669|gb|AEQ06147.1| UvrABC system protein B [Corynebacterium pseudotuberculosis CIP
52.97]
gi|355391998|gb|AER68663.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653578|gb|AFB71927.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 316]
gi|388247246|gb|AFK16237.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 258]
Length = 549
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPQADTARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
+++ L+ S+ VP ++ + YG+V+L KH + +ES +L +L++
Sbjct: 67 GVVDVLETFSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESAEPAILAELIR 123
>gi|306835555|ref|ZP_07468568.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
49726]
gi|304568555|gb|EFM44107.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
49726]
Length = 540
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEH+H Y++T+ +L+ A + G +
Sbjct: 4 PLIVQSDKTVLLEVDHPDSAAARTALAPFAELERAPEHVHTYRITSLALWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L+ S+ VP ++ + YG+V+L
Sbjct: 64 QVVDVLETYSRFPVPQSLLVDVAETMSRYGRVRL 97
>gi|300858010|ref|YP_003782993.1| hypothetical protein cpfrc_00592 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288177|ref|YP_005122718.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 3/99-5]
gi|383313771|ref|YP_005374626.1| UvrABC system protein B [Corynebacterium pseudotuberculosis P54B96]
gi|384506284|ref|YP_005682953.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|384508373|ref|YP_005685041.1| UvrABC system protein B [Corynebacterium pseudotuberculosis I19]
gi|384510465|ref|YP_005690043.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
gi|385807048|ref|YP_005843445.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 267]
gi|387136132|ref|YP_005692112.1| UvrABC system protein B [Corynebacterium pseudotuberculosis
42/02-A]
gi|300685464|gb|ADK28386.1| hypothetical protein cpfrc_00592 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205735|gb|ADL10077.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|308275971|gb|ADO25870.1| UvrABC system protein B [Corynebacterium pseudotuberculosis I19]
gi|341824404|gb|AEK91925.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
gi|348606577|gb|AEP69850.1| UvrABC system protein B [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575466|gb|AEX39069.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 3/99-5]
gi|380869272|gb|AFF21746.1| UvrABC system protein B [Corynebacterium pseudotuberculosis P54B96]
gi|383804441|gb|AFH51520.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 267]
Length = 549
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPQADPARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
I++ L+ S+ VP ++ + YG+V+L KH + +ES +L +L++
Sbjct: 67 GIVDVLETFSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESAEPAILAELIR 123
>gi|158312038|ref|YP_001504546.1| helicase domain-containing protein [Frankia sp. EAN1pec]
gi|158107443|gb|ABW09640.1| helicase domain protein [Frankia sp. EAN1pec]
Length = 545
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPLAPEARASIAPFAELERSPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ +VP+ ++ + YG+++L
Sbjct: 65 QVVDALVRYSRYAVPNALLVDVADTMDRYGRLRL 98
>gi|384504192|ref|YP_005680862.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1002]
gi|302330291|gb|ADL20485.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1002]
Length = 549
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPQADPARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
I++ L+ S+ VP ++ + YG+V+L KH + +ES +L +L++
Sbjct: 67 GIVDVLETFSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESTEPAILAELIR 123
>gi|386739932|ref|YP_006213112.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 31]
gi|384476626|gb|AFH90422.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 31]
Length = 549
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPQADTARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
+++ L+ S+ VP ++ + YG+V+L KH + +ES +L +L++
Sbjct: 67 GVVDVLETFSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESAEPAILAELIR 123
>gi|340359059|ref|ZP_08681557.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339885345|gb|EGQ75073.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 448 str.
F0400]
Length = 559
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + GL+
Sbjct: 10 PLIVQSDKSVLLEVSRPGADDARRAIAPFAELERAPEHVHTYRITPLALWNARAAGLDAE 69
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ I YG+++LV
Sbjct: 70 TVVHVLITYSRFPVPHSLLTEIAETMDRYGRLQLV 104
>gi|342180398|emb|CCC89875.1| putative DNA repair helicase and transcription factor protein
[Trypanosoma congolense IL3000]
Length = 937
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET---- 125
+ P G I + Y H DFL A EPVCR H+ EY ++ SL AA + G +
Sbjct: 3 LGPGGTILVNHSHSAYPHLRDFLTACCEPVCRTLHMSEYVISPSSLSAASTEGTYSMGMI 62
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINL 150
+++ Y + + +P I + L
Sbjct: 63 RNVLRYFRLNEQQRLPVDIARYNRL 87
>gi|422559000|ref|ZP_16634728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|314985619|gb|EFT29711.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
Length = 552
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG+V++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRVRI 100
>gi|300781756|ref|ZP_07091610.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
ATCC 33030]
gi|300533463|gb|EFK54524.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
ATCC 33030]
Length = 546
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + L+ P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLDVAHPEAAQARAAIAPFAELERAPEHVHTYRITPLALWNARAAGFDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
++ L+R S+ VP ++ + YG+++L+ KH
Sbjct: 67 QAVDVLERFSRFPVPQALLIDVAETMARYGRIRLI-KH 103
>gi|350569020|ref|ZP_08937418.1| DNA or RNA helicase of superfamily II [Propionibacterium avidum
ATCC 25577]
gi|348661263|gb|EGY77959.1| DNA or RNA helicase of superfamily II [Propionibacterium avidum
ATCC 25577]
Length = 552
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDRTLLLEVDHPLADECRHAISPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDTLMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|88855709|ref|ZP_01130372.1| DNA repair helicase [marine actinobacterium PHSC20C1]
gi|88815033|gb|EAR24892.1| DNA repair helicase [marine actinobacterium PHSC20C1]
Length = 548
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A L AE PEHIH Y++T L+ A + G +
Sbjct: 8 PLIVQSDRTVLLEVAHPLAEDARHDLAVFAELERAPEHIHTYRITRLGLWNARAAGHDAD 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
++E L++ SK +P + I YG++
Sbjct: 68 AMLETLEKYSKFPIPQSVSVDITETVGRYGRL 99
>gi|329922713|ref|ZP_08278265.1| helicase C-terminal domain protein [Paenibacillus sp. HGF5]
gi|328942055|gb|EGG38338.1| helicase C-terminal domain protein [Paenibacillus sp. HGF5]
Length = 595
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
++P V + I LE+ A + L A+ + P H Y+LT SL+ A S G+
Sbjct: 3 NKPCIVQRDRTILLETAHADAEAAREQLAQYADLIKSPASFHTYRLTPLSLWNAASGGMT 62
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
I L+ LS+ VP ++E I YG++ L+
Sbjct: 63 AEAICSSLQSLSRWDVPASLLEEIRQLVGRYGQLSLL 99
>gi|444306441|ref|ZP_21142206.1| helicase [Arthrobacter sp. SJCon]
gi|443481233|gb|ELT44163.1| helicase [Arthrobacter sp. SJCon]
Length = 548
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE + A + AE PEH+H Y+LT L+ A + GL+
Sbjct: 5 PLIVQSDKTILLEVDHELATEARHAIAPFAELERAPEHMHSYRLTPLGLWNARAAGLDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ I YG+++L
Sbjct: 65 KVLDTLLKYSRFPVPHSLLIDIEETMSRYGRLRL 98
>gi|317129326|ref|YP_004095608.1| type III restriction protein res subunit [Bacillus cellulosilyticus
DSM 2522]
gi|315474274|gb|ADU30877.1| type III restriction protein res subunit [Bacillus cellulosilyticus
DSM 2522]
Length = 553
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL + +G IF ++ P + FL A+ + P IH YKL A+S++ A+ G+
Sbjct: 2 PLTIQNDGTIFFQTDHPEAKIVQPFLSKFAQLIQTPATIHIYKLNAFSIWYALEEGITLK 61
Query: 127 DIIEYLKRLSKTSVPDGIVE 146
+I+ +L S +P + E
Sbjct: 62 EILHFLVSFSGKELPKEVEE 81
>gi|220911680|ref|YP_002486989.1| helicase [Arthrobacter chlorophenolicus A6]
gi|219858558|gb|ACL38900.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
Length = 548
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE + A + AE PEH+H Y+LT L+ A + GL+
Sbjct: 5 PLIVQSDKTILLEVDHELATEARHAIAPFAELERAPEHMHSYRLTPLGLWNARAAGLDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ I YG+++L
Sbjct: 65 RVLDTLLKYSRFPVPHSLLIDIEETMSRYGRLRL 98
>gi|152967555|ref|YP_001363339.1| helicase domain-containing protein [Kineococcus radiotolerans
SRS30216]
gi|151362072|gb|ABS05075.1| helicase domain protein [Kineococcus radiotolerans SRS30216]
Length = 557
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPRAGACRAAIAPFAELERAPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ SVP ++ + YG+++LV
Sbjct: 65 QVVDTLLEFSRYSVPHALLVDVAETMARYGRLQLV 99
>gi|323359212|ref|YP_004225608.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
StLB037]
gi|323275583|dbj|BAJ75728.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
StLB037]
Length = 549
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T L+ A + G +
Sbjct: 5 PLIVQSDRTVLLEVAHPEAETARHELAVFAELERAPEHIHTYRITRLGLWNARAAGHDAD 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
+++ L R S+ VP + I YG +LV++ N
Sbjct: 65 AMLDTLDRWSRFPVPASVSTDIRETVNRYG--RLVIERN 101
>gi|334338040|ref|YP_004543192.1| helicase domain-containing protein [Isoptericola variabilis 225]
gi|334108408|gb|AEG45298.1| helicase domain-containing protein [Isoptericola variabilis 225]
Length = 559
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE P A + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKSILLEVDHPRADDARRAIAPFAELERAPEHVHTYRLTNLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ VP ++ + YG+++LV
Sbjct: 65 QVVDTLLEYSRYPVPHALLVDVAETMARYGRLRLV 99
>gi|334562936|ref|ZP_08515927.1| putative helicase [Corynebacterium bovis DSM 20582]
Length = 553
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHDLAQEARTALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L+R S+ VP ++ I YG++ LV
Sbjct: 67 QVVDALERYSRFPVPQPLLIDIAETMDRYGRLTLV 101
>gi|376284299|ref|YP_005157509.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
31A]
gi|371577814|gb|AEX41482.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
31A]
Length = 554
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|38233371|ref|NP_939138.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
gi|375290427|ref|YP_005124967.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
241]
gi|376245260|ref|YP_005135499.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC01]
gi|376289918|ref|YP_005162165.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|38199631|emb|CAE49290.1| Putative ATP-dependent DNA helicase [Corynebacterium diphtheriae]
gi|371580098|gb|AEX43765.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
241]
gi|372103314|gb|AEX66911.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|372107890|gb|AEX73951.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC01]
Length = 554
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|376248066|ref|YP_005140010.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC04]
gi|376250862|ref|YP_005137743.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC03]
gi|372112366|gb|AEX78425.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC03]
gi|372114634|gb|AEX80692.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC04]
Length = 554
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|359778201|ref|ZP_09281472.1| putative ATP-dependent DNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359304664|dbj|GAB15301.1| putative ATP-dependent DNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 547
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE A + A AE PEH+H Y+LT L+ A + GL+
Sbjct: 5 PLIVQSDKTILLEVDHEQATEARHAIAAFAELERAPEHMHSYRLTPLGLWNARAAGLDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ I YG+++L
Sbjct: 65 RVLDTLLTYSRFPVPHSLLIDIEETMSRYGRLRL 98
>gi|422577080|ref|ZP_16652617.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
gi|314922095|gb|EFS85926.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
Length = 552
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADQCRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|453074363|ref|ZP_21977157.1| DNA repair helicase [Rhodococcus triatomae BKS 15-14]
gi|452764769|gb|EME23035.1| DNA repair helicase [Rhodococcus triatomae BKS 15-14]
Length = 559
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPLANEARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVTYSRFAVPQPLLVDIVDTIARYGRLQLV 99
>gi|376253869|ref|YP_005142328.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
PW8]
gi|372116953|gb|AEX69423.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
PW8]
Length = 554
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|376292821|ref|YP_005164495.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC02]
gi|372110144|gb|AEX76204.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC02]
Length = 554
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|422428926|ref|ZP_16505831.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|314980563|gb|EFT24657.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
Length = 552
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y++T L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRITPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG+V++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRVRI 100
>gi|375292652|ref|YP_005127191.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|376242398|ref|YP_005133250.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
CDCE 8392]
gi|371582323|gb|AEX45989.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|372105640|gb|AEX71702.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
CDCE 8392]
Length = 554
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|376256675|ref|YP_005144566.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
VA01]
gi|372119192|gb|AEX82926.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
VA01]
Length = 554
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|419860381|ref|ZP_14383022.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387982775|gb|EIK56274.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 554
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQEARIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHVLETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|378550700|ref|ZP_09825916.1| hypothetical protein CCH26_11456 [Citricoccus sp. CH26A]
Length = 570
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L + AE PEH+H Y++T L+ A + G++
Sbjct: 5 PLIVQSDKTVLLEVDHPDATEARHALASFAELERAPEHVHTYRITNLGLWNARAAGVDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ I+ YG+++L
Sbjct: 65 RVLDVLLTHSRYPVPHALLVDIDDTMSRYGRLRL 98
>gi|407934845|ref|YP_006850487.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|407903426|gb|AFU40256.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
Length = 552
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|392959534|ref|ZP_10325017.1| type III restriction protein res subunit [Pelosinus fermentans DSM
17108]
gi|421052601|ref|ZP_15515588.1| type III restriction protein res subunit [Pelosinus fermentans B4]
gi|421062252|ref|ZP_15524439.1| type III restriction protein res subunit [Pelosinus fermentans B3]
gi|421064029|ref|ZP_15525951.1| type III restriction protein res subunit [Pelosinus fermentans A12]
gi|421070443|ref|ZP_15531577.1| helicase domain-containing protein [Pelosinus fermentans A11]
gi|392442914|gb|EIW20475.1| type III restriction protein res subunit [Pelosinus fermentans B4]
gi|392444064|gb|EIW21536.1| type III restriction protein res subunit [Pelosinus fermentans B3]
gi|392448621|gb|EIW25810.1| helicase domain-containing protein [Pelosinus fermentans A11]
gi|392456473|gb|EIW33222.1| type III restriction protein res subunit [Pelosinus fermentans DSM
17108]
gi|392461889|gb|EIW38034.1| type III restriction protein res subunit [Pelosinus fermentans A12]
Length = 584
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
MV P + P+ V + + LE++ P + L A A+ PEHIH Y++T SL+
Sbjct: 1 MVYNP---TNPMIVQGDFSVLLEAYHPDFEIVRSGLSAFADLEKSPEHIHTYRITPLSLW 57
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
A + G ++E+L K +P+ + I YG VKL+
Sbjct: 58 NAAATGQTAAQVLEFLLTYVKFPLPNNVCRDIEGYMSRYGLVKLM 102
>gi|422473913|ref|ZP_16550383.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|313834526|gb|EFS72240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
Length = 552
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|289424569|ref|ZP_06426352.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|335053521|ref|ZP_08546358.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
gi|417930924|ref|ZP_12574297.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
gi|289155266|gb|EFD03948.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|333766924|gb|EGL44201.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
gi|340769247|gb|EGR91771.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
Length = 694
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 149 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 208
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 209 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 242
>gi|295130034|ref|YP_003580697.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|342211342|ref|ZP_08704067.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
gi|291376058|gb|ADD99912.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|340766886|gb|EGR89411.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
Length = 553
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 8 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 68 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 101
>gi|325962248|ref|YP_004240154.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468335|gb|ADX72020.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 548
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE + A + AE PEH+H Y+LT L+ A + GL+
Sbjct: 5 PLIVQSDKTILLEVDHVLATEARHAIAPFAELERAPEHMHSYRLTPLGLWNARAAGLDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ + YG+++L
Sbjct: 65 KVLDTLLKYSRFPVPHSLLIDVEETMSRYGRLRL 98
>gi|282853546|ref|ZP_06262883.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|386071008|ref|YP_005985904.1| DEAD/DEAH box helicase [Propionibacterium acnes ATCC 11828]
gi|422458408|ref|ZP_16535062.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|422465393|ref|ZP_16541996.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
gi|422468857|ref|ZP_16545388.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|282582999|gb|EFB88379.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|314982316|gb|EFT26409.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|315092642|gb|EFT64618.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
gi|315104630|gb|EFT76606.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|353455374|gb|AER05893.1| DEAD/DEAH box helicase [Propionibacterium acnes ATCC 11828]
Length = 552
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|422435129|ref|ZP_16511987.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327455607|gb|EGF02262.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
Length = 552
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|365962182|ref|YP_004943748.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365964426|ref|YP_004945991.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365973362|ref|YP_004954921.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|387502843|ref|YP_005944072.1| DEAD/DEAH box helicase [Propionibacterium acnes 6609]
gi|419420681|ref|ZP_13960910.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|422387315|ref|ZP_16467432.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA2]
gi|422392114|ref|ZP_16472188.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL099PA1]
gi|422395160|ref|ZP_16475201.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL097PA1]
gi|422424884|ref|ZP_16501830.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422427243|ref|ZP_16504161.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422431858|ref|ZP_16508728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436622|ref|ZP_16513469.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422442842|ref|ZP_16519645.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422446641|ref|ZP_16523386.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422450009|ref|ZP_16526726.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|422453274|ref|ZP_16529970.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422456418|ref|ZP_16533082.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|422460415|ref|ZP_16537049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|422476788|ref|ZP_16553227.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422484213|ref|ZP_16560592.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|422491773|ref|ZP_16568084.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422494156|ref|ZP_16570451.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|422500454|ref|ZP_16576710.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422511566|ref|ZP_16587709.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422515627|ref|ZP_16591739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422518196|ref|ZP_16594268.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|422520842|ref|ZP_16596884.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422523774|ref|ZP_16599786.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422526334|ref|ZP_16602333.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422528355|ref|ZP_16604337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422531280|ref|ZP_16607228.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422535815|ref|ZP_16611723.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|422538301|ref|ZP_16614175.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|422541084|ref|ZP_16616942.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422543632|ref|ZP_16619472.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|422546547|ref|ZP_16622374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550974|ref|ZP_16626771.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|422557739|ref|ZP_16633482.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|422562547|ref|ZP_16638225.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|422570476|ref|ZP_16646071.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|422578287|ref|ZP_16653816.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|313765421|gb|EFS36785.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|313772592|gb|EFS38558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313792945|gb|EFS41012.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313802605|gb|EFS43827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313810814|gb|EFS48528.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313814341|gb|EFS52055.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313815175|gb|EFS52889.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313828480|gb|EFS66194.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|313831933|gb|EFS69647.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313840243|gb|EFS77957.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|314915936|gb|EFS79767.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314916965|gb|EFS80796.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314921485|gb|EFS85316.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314931191|gb|EFS95022.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314954750|gb|EFS99156.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314958917|gb|EFT03019.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314964361|gb|EFT08461.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314969460|gb|EFT13558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|314974527|gb|EFT18622.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314977279|gb|EFT21374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|315078624|gb|EFT50655.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315081915|gb|EFT53891.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315097598|gb|EFT69574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|315099814|gb|EFT71790.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|315101878|gb|EFT73854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|315106614|gb|EFT78590.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|315110404|gb|EFT82380.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|327331551|gb|EGE73290.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA2]
gi|327335058|gb|EGE76769.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL097PA1]
gi|327447055|gb|EGE93709.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|327449909|gb|EGE96563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327454752|gb|EGF01407.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|327456900|gb|EGF03555.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328755809|gb|EGF69425.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|328756588|gb|EGF70204.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328761680|gb|EGF75195.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL099PA1]
gi|335276888|gb|AEH28793.1| DEAD/DEAH box helicase [Propionibacterium acnes 6609]
gi|365738863|gb|AEW83065.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741107|gb|AEW80801.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365743361|gb|AEW78558.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|379979055|gb|EIA12379.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|456740051|gb|EMF64582.1| DEAD/DEAH box helicase [Propionibacterium acnes FZ1/2/0]
Length = 552
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|172041250|ref|YP_001800964.1| helicase [Corynebacterium urealyticum DSM 7109]
gi|448824179|ref|YP_007417348.1| putative helicase [Corynebacterium urealyticum DSM 7111]
gi|171852554|emb|CAQ05530.1| putative helicase [Corynebacterium urealyticum DSM 7109]
gi|448277676|gb|AGE37100.1| putative helicase [Corynebacterium urealyticum DSM 7111]
Length = 526
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPKAQEARTALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
I++ L+ S+ P ++ I YG++KL+ KH
Sbjct: 67 QIMDVLETYSRFPAPQPLLIDIADTMDRYGRLKLI-KH 103
>gi|50841956|ref|YP_055183.1| superfamily II DNA/RNA helicase [Propionibacterium acnes KPA171202]
gi|50839558|gb|AAT82225.1| DNA or RNA helicase of superfamily II [Propionibacterium acnes
KPA171202]
Length = 694
Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 149 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 208
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 209 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 242
>gi|421074772|ref|ZP_15535796.1| type III restriction protein res subunit [Pelosinus fermentans
JBW45]
gi|392527131|gb|EIW50233.1| type III restriction protein res subunit [Pelosinus fermentans
JBW45]
Length = 584
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
MV P + P+ V + + LE++ P + L A A+ PEHIH Y++T SL+
Sbjct: 1 MVYNP---TNPMIVQGDFSVLLEAYHPDFEIVRGGLSAFADLEKSPEHIHTYRITPLSLW 57
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
A + G ++E+L K +P+ + I YG VKL+
Sbjct: 58 NAAATGQTAAQVLEFLLTYVKFPLPNNVCRDIEGYMSRYGLVKLM 102
>gi|358446589|ref|ZP_09157133.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
gi|356607393|emb|CCE55475.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
Length = 543
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 4 PLIVQSDKTVLLEVDHPQAHEARAALAPFAELERAPEHIHTYRITPLALWNAKAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK-HNRYFIESPFAEVLQKLLK 182
+ L+ S+ VP ++ + YG+V+++ + +ES ++++L++
Sbjct: 64 QAVHVLETFSRFPVPQALLVDVAETMSRYGRVRILKSPAHGLILESTEQAIIEELVR 120
>gi|284033810|ref|YP_003383741.1| helicase domain-containing protein [Kribbella flavida DSM 17836]
gi|283813103|gb|ADB34942.1| helicase domain protein [Kribbella flavida DSM 17836]
Length = 546
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE+ P + +E PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLETAHPDSNDCRKAIAPFSELERAPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+I+ L R S+ VP ++ I YG+++L
Sbjct: 65 QVIDVLLRYSRYPVPHSLLVDIAETLDRYGRLRL 98
>gi|433456109|ref|ZP_20414167.1| helicase domain-containing protein [Arthrobacter crystallopoietes
BAB-32]
gi|432196698|gb|ELK53134.1| helicase domain-containing protein [Arthrobacter crystallopoietes
BAB-32]
Length = 553
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I LE A + A AE PEH+H Y++T L+ A + G++
Sbjct: 5 PLIVQSDKTILLEVDHEQATEARHAIAAFAELERAPEHVHSYRITPLGLWNARAAGVDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ I YG+++L
Sbjct: 65 QVLDTLLTYSRFPVPHALLVDIEETMSRYGRLRL 98
>gi|331699464|ref|YP_004335703.1| type III restriction protein res subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326954153|gb|AEA27850.1| type III restriction protein res subunit [Pseudonocardia
dioxanivorans CB1190]
Length = 553
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPAAGDARSAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ +VP ++ + YG+++L
Sbjct: 65 QVVDALVRYSRYAVPQPLLVDVVDTMGRYGRLQL 98
>gi|374606947|ref|ZP_09679761.1| hypothetical protein PDENDC454_27803 [Paenibacillus dendritiformis
C454]
gi|374387452|gb|EHQ58960.1| hypothetical protein PDENDC454_27803 [Paenibacillus dendritiformis
C454]
Length = 661
Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 42 AVPEDEFGAKDYR---AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 98
A PE E GA YR +M P ++ P+ I L + +P Y L AIAE
Sbjct: 331 ARPEQEEGAWAYRLPEQEMAEGPG-----FFIQPDFEILLPAAAPFYLRWE--LEAIAEC 383
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
V R + + Y+LT S V G ++ +++ + + VP+ I + + L +L YG+V
Sbjct: 384 V-RTDQMDVYRLTKASFEQGVEHGRTMESVLRFMEAHAWSGVPENIQDAMELWSLQYGRV 442
Query: 159 KLV-LKHNRYFIESPFAEVLQKLLKDP 184
+ + R AEV + LL++P
Sbjct: 443 RFAEVMLLRCEDSDVAAEVKEALLREP 469
>gi|291303533|ref|YP_003514811.1| type III restriction protein res subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290572753|gb|ADD45718.1| type III restriction protein res subunit [Stackebrandtia
nassauensis DSM 44728]
Length = 549
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE+ P+ + AE PEHIH Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLETGHPLAAECRVAIAPFAELERAPEHIHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L + ++ VP ++ + YG+++L LKH
Sbjct: 65 GVVDALLKYARYPVPHSLLLDLTETMDRYGRLRL-LKH 101
>gi|261405781|ref|YP_003242022.1| type III restriction protein res subunit [Paenibacillus sp.
Y412MC10]
gi|261282244|gb|ACX64215.1| type III restriction protein res subunit [Paenibacillus sp.
Y412MC10]
Length = 595
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
++P V + I LE+ A + L A+ + P H Y+LT SL+ A + G+
Sbjct: 3 NKPCIVQRDRTILLETAHADAEAAREQLAQYADLIKSPASFHTYRLTPLSLWNAAAGGMS 62
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
I L+ LS+ VP ++E + YG++ L+
Sbjct: 63 AEAICSSLQSLSRWDVPAALLEEVRQLVGRYGQLSLL 99
>gi|296271247|ref|YP_003653879.1| helicase domain-containing protein [Thermobispora bispora DSM
43833]
gi|296094034|gb|ADG89986.1| helicase domain protein [Thermobispora bispora DSM 43833]
Length = 551
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVGHPLADECRKAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLKDP 184
+++ L R S+ VP ++ + YG+++L KH + + + VL+++L+
Sbjct: 65 QVVDALLRYSRYPVPHALLIDVAETMARYGRLRLE-KHPIHGLVLTASDRAVLEEVLRSR 123
Query: 185 VIQDCRLRRDTEDSQTL-------INQADKKLKAP 212
I+ R ED+ + I QA KL P
Sbjct: 124 KIRPMLGERLDEDTVAVHPSERGNIKQALLKLGWP 158
>gi|417932536|ref|ZP_12575874.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
gi|340774172|gb|EGR96659.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
Length = 553
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 8 PLIVQSDHTLLLEIDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 68 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 101
>gi|335052816|ref|ZP_08545684.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
gi|333762212|gb|EGL39718.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
Length = 430
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 8 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 68 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 101
>gi|256833263|ref|YP_003161990.1| helicase domain-containing protein [Jonesia denitrificans DSM
20603]
gi|256686794|gb|ACV09687.1| helicase domain protein [Jonesia denitrificans DSM 20603]
Length = 558
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + L+ P+ A + AE PEHIH Y+LT L+ A + G++
Sbjct: 5 PLIVQSDKSLLLDVAHPLADDARRAIAPFAELERAPEHIHTYRLTPLGLWNARAAGMDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+ L S+ VP ++ I YG++ L+
Sbjct: 65 SAVNVLITYSRFPVPHSVLVDIAETMARYGRLTLM 99
>gi|422389943|ref|ZP_16470040.1| DNA repair helicase RAD25 [Propionibacterium acnes HL103PA1]
gi|422463969|ref|ZP_16540582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|422566280|ref|ZP_16641919.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|314965180|gb|EFT09279.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|315093939|gb|EFT65915.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|327329470|gb|EGE71230.1| DNA repair helicase RAD25 [Propionibacterium acnes HL103PA1]
Length = 552
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDEE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|433602329|ref|YP_007034698.1| Type III restriction protein res subunit [Saccharothrix espanaensis
DSM 44229]
gi|407880182|emb|CCH27825.1| Type III restriction protein res subunit [Saccharothrix espanaensis
DSM 44229]
Length = 553
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVGHPLSEDARTAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ VP ++ + +G+++L
Sbjct: 65 QVVDALVRFSRYPVPQPLLVDVVDTMGRFGRLQL 98
>gi|227548339|ref|ZP_03978388.1| DNA helicase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079657|gb|EEI17620.1| DNA helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 547
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + ++ L+R S+ VP ++ + YG+V+LV
Sbjct: 43 PEHVHTYRITPLALWNARAAGFDAEQAVDTLERFSRFPVPQPLLIDVAETMARYGRVRLV 102
>gi|354582460|ref|ZP_09001362.1| type III restriction protein res subunit [Paenibacillus lactis 154]
gi|353199859|gb|EHB65321.1| type III restriction protein res subunit [Paenibacillus lactis 154]
Length = 606
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+P V + I LE+ P + A L A+ V P H Y++T SL+ A + G
Sbjct: 4 KPCIVQRDRTILLETAHPEFEQARRQLSQYADLVKSPSSFHTYRITPLSLWNAAASGKSA 63
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVL---KHNRYFIESPFAEVLQKLLK 182
I L+ L++ VP ++ I YG++ L+ K R + S +L +L
Sbjct: 64 ETICSSLQGLARWEVPVQVLAEIRQLVSRYGQLSLLPHPDKEQRLLLRSVSEPLLNELRS 123
Query: 183 DPVIQDCRL 191
+ D L
Sbjct: 124 LRTLADIGL 132
>gi|333372011|ref|ZP_08463948.1| DNA repair helicase [Desmospora sp. 8437]
gi|332975087|gb|EGK11992.1| DNA repair helicase [Desmospora sp. 8437]
Length = 569
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P ++ D L AE V P+ +H Y++T SL+ A + G E
Sbjct: 15 PLIVQADRTVLLEVDHPSFQRVRDQLSGFAELVKSPDLLHTYRITPLSLWNAAAAGTEAE 74
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
+II +L+ SK +P + + + YG +KL + A + Q+L
Sbjct: 75 EIISFLEEESKFGLPASLKKEVEETMARYGLLKLEAADQGLILSVKDASLFQRL 128
>gi|422441473|ref|ZP_16518282.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422472803|ref|ZP_16549284.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|422573218|ref|ZP_16648783.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|313835461|gb|EFS73175.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314928522|gb|EFS92353.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314970456|gb|EFT14554.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
Length = 549
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDTLMRYSRYPVASGLLIDVAETMSHYGRLRI 100
>gi|354606435|ref|ZP_09024406.1| hypothetical protein HMPREF1003_00973 [Propionibacterium sp.
5_U_42AFAA]
gi|422384461|ref|ZP_16464602.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA3]
gi|422447472|ref|ZP_16524204.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|422479701|ref|ZP_16556111.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|422481533|ref|ZP_16557932.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|422487604|ref|ZP_16563935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422489052|ref|ZP_16565379.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498015|ref|ZP_16574288.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422504240|ref|ZP_16580477.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|422504942|ref|ZP_16581176.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422509427|ref|ZP_16585585.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|422514403|ref|ZP_16590524.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|422535349|ref|ZP_16611272.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|422553142|ref|ZP_16628929.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422554616|ref|ZP_16630386.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|422567764|ref|ZP_16643390.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|313806616|gb|EFS45123.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|313817160|gb|EFS54874.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|313821776|gb|EFS59490.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|313824332|gb|EFS62046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|313826692|gb|EFS64406.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|314926883|gb|EFS90714.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|314961211|gb|EFT05312.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314987445|gb|EFT31536.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|314988958|gb|EFT33049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315082589|gb|EFT54565.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|315086301|gb|EFT58277.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|315087551|gb|EFT59527.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|327333533|gb|EGE75253.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA3]
gi|327445441|gb|EGE92095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328758685|gb|EGF72301.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|353557842|gb|EHC27210.1| hypothetical protein HMPREF1003_00973 [Propionibacterium sp.
5_U_42AFAA]
Length = 552
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y++T L+ A++ G +
Sbjct: 7 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRITPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 67 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 100
>gi|237785046|ref|YP_002905751.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237757958|gb|ACR17208.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 558
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 11 PLIVQSDKTVLLEIDHPKAEEARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAE 70
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L+ S+ VP ++ I YG++ L
Sbjct: 71 QVVDVLENYSRFPVPQPLLVDIADTMGRYGRLTL 104
>gi|289428471|ref|ZP_06430157.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|386023418|ref|YP_005941721.1| DNA helicase [Propionibacterium acnes 266]
gi|289158443|gb|EFD06660.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|332674874|gb|AEE71690.1| DNA helicase [Propionibacterium acnes 266]
Length = 553
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y++T L+ A++ G +
Sbjct: 8 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRITPLGLWNAMAAGHDAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 68 QVVDILMRYSRYPVASGLLIDVTETMSRYGRLRI 101
>gi|312194018|ref|YP_004014079.1| helicase domain-containing protein [Frankia sp. EuI1c]
gi|311225354|gb|ADP78209.1| helicase domain protein [Frankia sp. EuI1c]
Length = 545
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A + AE PEHIH Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPQAKLARAAIAPFAELERSPEHIHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ +VP+ ++ + YG+++L
Sbjct: 65 QVVDALVTYSRYAVPNALLVDVADTMDRYGRLRL 98
>gi|302544484|ref|ZP_07296826.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
ATCC 53653]
gi|302462102|gb|EFL25195.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
ATCC 53653]
Length = 565
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ + YG+++L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVAFSRYPVPHALLVDVAETMARYGRLRL- 97
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
LKH + +E+ VL+++L+ IQ
Sbjct: 98 LKHPTHGLVLETSDRPVLEEILRSKRIQ 125
>gi|395203324|ref|ZP_10394558.1| DEAD/DEAH box helicase [Propionibacterium humerusii P08]
gi|328908278|gb|EGG28037.1| DEAD/DEAH box helicase [Propionibacterium humerusii P08]
Length = 580
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A++ G +
Sbjct: 38 PLIVQSDHTLLLEVDHPQADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 97
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V G++ + YG++++
Sbjct: 98 QVVDTLMRYSRYPVASGLLIDVAETMSHYGRLRI 131
>gi|374987682|ref|YP_004963177.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
BCW-1]
gi|297158334|gb|ADI08046.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
BCW-1]
Length = 551
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ + YG+++L
Sbjct: 38 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDVAETMARYGRLRL- 96
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
LKH + +E+ VLQ++L IQ
Sbjct: 97 LKHPTHGLVLETSDRPVLQEVLHSKKIQ 124
>gi|410865494|ref|YP_006980105.1| DNA or RNA helicase of superfamily II [Propionibacterium
acidipropionici ATCC 4875]
gi|410822135|gb|AFV88750.1| DNA or RNA helicase of superfamily II [Propionibacterium
acidipropionici ATCC 4875]
Length = 551
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ + AE PEHIH Y+LT L+ A++ G +
Sbjct: 7 PLIVQSDRTLLLEVDHPLADECRHAIAPFAELERAPEHIHTYRLTPLGLWNAMAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ V ++ + YG++++
Sbjct: 67 QVVDVLMRYSRYPVASSLLVDVTETMGRYGRLRI 100
>gi|227487728|ref|ZP_03918044.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092230|gb|EEI27542.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 555
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPKADEARAALAPFAELERAPEHVHTYRITTLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+ L +K P ++ I YG+V+L
Sbjct: 67 QVIDVLDSYAKFPPPQSLLIDIAETMSRYGRVRLT 101
>gi|297563115|ref|YP_003682089.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
gi|296847563|gb|ADH69583.1| helicase domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 548
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ + + G + +++ L R SK VP ++ I YG+++LV
Sbjct: 38 PEHVHTYRITPLALWNSRAAGHDAEQVVDALIRFSKFPVPHSLLVDIAETMDRYGRLRLV 97
Query: 162 L--KHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
+H +ES VL+++++ ++ R EDS
Sbjct: 98 GDPRHG-LVLESSDRAVLEEVVRAKKLKGMLGERLGEDS 135
>gi|227542367|ref|ZP_03972416.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181565|gb|EEI62537.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 555
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPKADEARAALAPFAELERAPEHVHTYRITTLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+I+ L +K P ++ I YG+V+L
Sbjct: 67 QVIDVLDSYAKFPPPQSLLIDIAETMSRYGRVRLT 101
>gi|340052988|emb|CCC47274.1| putative DNA repair helicase and transcription factor protein,
fragment [Trypanosoma vivax Y486]
Length = 922
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET---- 125
V G I++ P Y DFL A EPVCR H+ EY ++ SL AA + G +
Sbjct: 3 VGQGGSIYVRHAHPAYPLLRDFLTACCEPVCRTAHMSEYVISPSSLSAASAEGTYSVAMI 62
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINL 150
+++ Y + +K +P IV+++ L
Sbjct: 63 RNVVRYFRLDAKFRLPVDIVKYVEL 87
>gi|84498512|ref|ZP_00997282.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
gi|84381255|gb|EAP97139.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
Length = 545
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
L V + + LE P A + AE PEHIH Y++T L+ A + G +
Sbjct: 6 LIVQSDKTLLLEVDHPRSAEARRAIAPFAELERAPEHIHTYRITPLGLWNARAAGHDAEQ 65
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQ 187
+++ L S+ VP ++ + YG++ L + R + + VL ++L+ I+
Sbjct: 66 VVDALVTHSRYPVPHALLVDVADTMARYGRLTLTKEDGRLVLRTTDRAVLTEVLRHKRIK 125
Query: 188 DCRLRRDTEDS 198
R ED+
Sbjct: 126 PLIGERIDEDT 136
>gi|381398295|ref|ZP_09923699.1| type III restriction protein res subunit [Microbacterium
laevaniformans OR221]
gi|380774261|gb|EIC07561.1| type III restriction protein res subunit [Microbacterium
laevaniformans OR221]
Length = 547
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T L+ A + G
Sbjct: 5 PLIVQSDRTVLLEVAHPQAETARHELAIFAELERAPEHIHTYRVTRLGLWNARAAGHSAD 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
D++ L R S+ VP + I YG++
Sbjct: 65 DMLATLDRWSRFPVPASVSIDIRETVNRYGRL 96
>gi|304404122|ref|ZP_07385784.1| type III restriction protein res subunit [Paenibacillus
curdlanolyticus YK9]
gi|304347100|gb|EFM12932.1| type III restriction protein res subunit [Paenibacillus
curdlanolyticus YK9]
Length = 568
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%)
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
+PL V + + L+ + A + L A+ P IH Y+++ SL+ A S G+
Sbjct: 12 KPLIVLADLTVLLDERMQESQAAREALSRFADLEKSPSFIHTYRISPLSLWNAASSGIAA 71
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPV 185
+ +++ L R ++ VP G+ + I +G+++L N + +L + +P
Sbjct: 72 NVVLDTLARFNRYHVPKGVEDRIRELMERFGRLRLDRCANDKLRLTGDEALLAAIRLEPS 131
Query: 186 IQDC 189
IQ C
Sbjct: 132 IQAC 135
>gi|50955355|ref|YP_062643.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951837|gb|AAT89538.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 546
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T L+ A + G
Sbjct: 5 PLIVQSDRTVLLEVAHPDAEDARRDLAVFAELERAPEHIHTYRITRLGLWNARAAGHTAD 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
D++ L+R SK +P + + YG++
Sbjct: 65 DMLGTLERYSKFPLPQTVSVDVAETVARYGRL 96
>gi|392945909|ref|ZP_10311551.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
gi|392289203|gb|EIV95227.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
Length = 574
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPGAPEARAAIAPFAELERSPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ +VP ++ + YG+++L
Sbjct: 65 QVVDALVRHSRYAVPHALLVDVADTMDRYGRLRL 98
>gi|379734135|ref|YP_005327640.1| putative DNA helicase, superfamily II [Blastococcus saxobsidens
DD2]
gi|378781941|emb|CCG01595.1| Putative DNA helicase, superfamily II [Blastococcus saxobsidens
DD2]
Length = 561
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ R + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPLSRDCRAAIAPFAELERSPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ VP ++ + +G++ L
Sbjct: 65 QVVDALVRYSRYPVPHALLVDVADTMDRFGRLTL 98
>gi|258654903|ref|YP_003204059.1| helicase domain-containing protein [Nakamurella multipartita DSM
44233]
gi|258558128|gb|ACV81070.1| helicase domain protein [Nakamurella multipartita DSM 44233]
Length = 554
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVSHPDAPAARANIAPFAELERSPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
+++ L R S+ VP ++ + YG +LVL+ N
Sbjct: 65 QVVDALVRWSRFPVPQALLVDVVDTMSRYG--RLVLQAN 101
>gi|390566548|ref|ZP_10246916.1| Type III restriction protein res subunit [Nitrolancetus hollandicus
Lb]
gi|390170199|emb|CCF86268.1| Type III restriction protein res subunit [Nitrolancetus hollandicus
Lb]
Length = 529
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
I + + SP + A D L AE V H Y++T SL++A + GL I + R
Sbjct: 15 ILISTASPAFTAARDQLRQFAELVQSAGTYHTYRVTDLSLWSAAASGLTAATIGDVFDRF 74
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKL 160
+ + P +V F+ YG ++L
Sbjct: 75 GEYAPPRSLVAFVQEFIRRYGLLRL 99
>gi|284989384|ref|YP_003407938.1| type III restriction protein res subunit [Geodermatophilus obscurus
DSM 43160]
gi|284062629|gb|ADB73567.1| type III restriction protein res subunit [Geodermatophilus obscurus
DSM 43160]
Length = 561
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P R + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPAARDCRAAIAPFAELERSPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ VP ++ I +G++ L
Sbjct: 65 QVVDALVRHSRYPVPHALLVDIADTMDRFGRLTL 98
>gi|269796419|ref|YP_003315874.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269098604|gb|ACZ23040.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
Length = 558
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKSLLLEVDHPQSDAARRAIAPFAELERAPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L S+ +VP ++ + YG++ L KH + +E+ VL +++K
Sbjct: 65 QVVNVLLAFSRYAVPHALLVDVAETMSRYGRLTLS-KHPVHGLVLETTDRAVLAEVMK 121
>gi|389862535|ref|YP_006364775.1| DNA helicase, superfamily II [Modestobacter marinus]
gi|388484738|emb|CCH86278.1| Putative DNA helicase, superfamily II [Modestobacter marinus]
Length = 561
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPQSKECRAAIAPFAELERSPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ VP ++ I YG++ L
Sbjct: 65 QVVDALVRYSRYPVPHALLVDIADTMDRYGRLTL 98
>gi|68535479|ref|YP_250184.1| helicase [Corynebacterium jeikeium K411]
gi|68263078|emb|CAI36566.1| putative helicase [Corynebacterium jeikeium K411]
Length = 548
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHEQAQEARTALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L+ S+ VP ++ I YG++KL+ KH
Sbjct: 67 QVMDVLETYSRFPVPQPLLIDIADTMDRYGRLKLI-KH 103
>gi|336324822|ref|YP_004604788.1| putative helicase [Corynebacterium resistens DSM 45100]
gi|336100804|gb|AEI08624.1| putative helicase [Corynebacterium resistens DSM 45100]
Length = 151
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHEQAQEARTALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L+ S+ VP ++ I YG++KL+
Sbjct: 67 QVMDVLENYSRFPVPQPLLIDIADTMDRYGRLKLI 101
>gi|397653495|ref|YP_006494178.1| hypothetical protein CULC0102_0743 [Corynebacterium ulcerans 0102]
gi|393402451|dbj|BAM26943.1| hypothetical protein CULC0102_0743 [Corynebacterium ulcerans 0102]
Length = 549
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L++ S+ VP ++ + YG+V+L
Sbjct: 42 PEHIHTYRITPLALWNARAAGHDAEGVVDVLEKFSRFPVPQALLIDVAETMSRYGRVRL- 100
Query: 162 LKH--NRYFIESPFAEVLQKLLK 182
KH + +ES +L +L++
Sbjct: 101 HKHPAHGLILESAEPAILAELIR 123
>gi|337290254|ref|YP_004629275.1| hypothetical protein CULC22_00643 [Corynebacterium ulcerans
BR-AD22]
gi|384515173|ref|YP_005710265.1| hypothetical protein CULC809_00635 [Corynebacterium ulcerans 809]
gi|334696374|gb|AEG81171.1| hypothetical protein CULC809_00635 [Corynebacterium ulcerans 809]
gi|334698560|gb|AEG83356.1| hypothetical protein CULC22_00643 [Corynebacterium ulcerans
BR-AD22]
Length = 549
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L++ S+ VP ++ + YG+V+L
Sbjct: 42 PEHIHTYRITPLALWNARAAGHDAEGVVDVLEKFSRFPVPQALLIDVAETMSRYGRVRL- 100
Query: 162 LKH--NRYFIESPFAEVLQKLLK 182
KH + +ES +L +L++
Sbjct: 101 HKHPAHGLILESAEPAILAELIR 123
>gi|343928179|ref|ZP_08767634.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC
16433]
gi|343761877|dbj|GAA14560.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC
16433]
Length = 559
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 8 PLIVQSDKTLLLEVDHPDAQAARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L S+ +VP ++ + +G+++LV KH
Sbjct: 68 QVVDALVTFSRYAVPQPLLMDVVDTMGRFGRLQLV-KH 104
>gi|332380642|gb|AEE65518.1| helicase domain protein [uncultured bacterium BAC AB649/1850]
Length = 553
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAQACRMAIAPFAELERSPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L + S+ VP ++ I YG+++LV
Sbjct: 65 GVVDSLIKFSRYPVPHALLVDIADTMDRYGRLQLV 99
>gi|227504269|ref|ZP_03934318.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
gi|227199156|gb|EEI79204.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
Length = 543
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T +L+ A + G + +++ L+R S+ VP ++ + YG+V+L
Sbjct: 39 PEHVHTYRITPLALWNARAAGHDAEQVVDVLERYSRFPVPQALLIDVAETMSRYGRVRL 97
>gi|68535483|ref|YP_250188.1| helicase [Corynebacterium jeikeium K411]
gi|68263082|emb|CAI36570.1| putative helicase [Corynebacterium jeikeium K411]
Length = 526
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHEQAQEARTALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L+ S+ VP ++ I YG++KL+ KH
Sbjct: 67 QVMDVLETYSRFPVPQPLLIDIADTMDRYGRLKLI-KH 103
>gi|317123892|ref|YP_004098004.1| helicase [Intrasporangium calvum DSM 43043]
gi|315587980|gb|ADU47277.1| helicase domain protein [Intrasporangium calvum DSM 43043]
Length = 550
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPRAEEARRAIAPFAELERAPEHVHTYRVTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL-------VLKHNRYFIESPFAEVLQK 179
+++ L S+ +VP ++ I YG++ L + R + + VL++
Sbjct: 65 QVVDALITFSRYAVPHALLVDIADTMDRYGRLTLEKEGFADSAEGTRLVLRTTDRPVLEE 124
Query: 180 LLKDPVIQ 187
+L+ IQ
Sbjct: 125 VLRHKKIQ 132
>gi|376287277|ref|YP_005159843.1| DNA excision repair protein ERCC-3 [Corynebacterium diphtheriae
BH8]
gi|371584611|gb|AEX48276.1| DNA excision repair protein ERCC-3 [Corynebacterium diphtheriae
BH8]
Length = 248
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + L AE PEH+H Y++T +L+ + + G +
Sbjct: 7 PLIVQSDKTVLLEVDHPRAQETRIALAPFAELERAPEHVHTYRITPLALWNSRAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ + YG+V+L KH + +ES +L +LL+
Sbjct: 67 QVVHALETYSRFPVPQALLIDVAETMSRYGRVRL-HKHPAHGLILESEEPAILAELLR 123
>gi|357590863|ref|ZP_09129529.1| hypothetical protein CnurS_11732 [Corynebacterium nuruki S6-4]
Length = 548
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPKAQEARVALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
++ L+ S+ VP ++ I YG++ L
Sbjct: 67 QVVHVLETYSRFPVPQPLLVDIAETMDRYGRLTL 100
>gi|403508838|ref|YP_006640476.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402798567|gb|AFR05977.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 545
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L R S+ VP ++ I YG++ LV
Sbjct: 35 PEHVHTYRITPLALWNARAAGHDAEQVVDALIRFSRFPVPHSLLVDIAETMDRYGRLTLV 94
Query: 162 LK--HNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
H +ES VL+++++ ++ R +EDS
Sbjct: 95 GDPVHG-LVLESSDRAVLEEVVRAKKLKGMLGERLSEDS 132
>gi|170783064|ref|YP_001711398.1| DNA repair helicase [Clavibacter michiganensis subsp. sepedonicus]
gi|169157634|emb|CAQ02832.1| putative DNA repair helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 546
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A L AE PEHIH Y++T L+ A + G
Sbjct: 5 PLIVQSDRTVLLEVAHADAEDARHDLAVFAELERAPEHIHTYRITRLGLWNARAAGHTAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
D++ L+R S+ VP + + YG++
Sbjct: 65 DMLATLERYSRFPVPQSVTVDVTDTVGRYGRL 96
>gi|148273657|ref|YP_001223218.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831587|emb|CAN02555.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 554
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A L AE PEHIH Y++T L+ A + G
Sbjct: 13 PLIVQSDRTVLLEVAHADAEDARHDLAVFAELERAPEHIHTYRITRLGLWNARAAGHTAE 72
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
D++ L+R S+ VP + + YG++
Sbjct: 73 DMLATLERYSRFPVPQSVTVDVTDTVGRYGRL 104
>gi|358461384|ref|ZP_09171548.1| helicase domain protein [Frankia sp. CN3]
gi|357073367|gb|EHI82874.1| helicase domain protein [Frankia sp. CN3]
Length = 545
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPRANEARAGIAPFAELERSPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ +VP ++ + YG+++L
Sbjct: 65 QVVDALVTYSRYAVPHALLVDVADTMDRYGRLRL 98
>gi|345015973|ref|YP_004818327.1| helicase [Streptomyces violaceusniger Tu 4113]
gi|344042322|gb|AEM88047.1| helicase domain-containing protein [Streptomyces violaceusniger Tu
4113]
Length = 549
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ + YG+++L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVAYSRYPVPHALLVDVAETMARYGRLRL- 97
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
LKH + +E+ +L+++L+ IQ
Sbjct: 98 LKHPTHGLVLETSDRPILEEILRSKKIQ 125
>gi|296118323|ref|ZP_06836904.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
DSM 20306]
gi|295968881|gb|EFG82125.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
DSM 20306]
Length = 543
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEHIH Y++T +L+ A + G +
Sbjct: 4 PLIVQSDKTVLLEVDHPQAHEARAALAPFAELERAPEHIHTYRITPLALWNAKAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+ L S+ VP ++ I YG+V +
Sbjct: 64 QAVHVLDSYSRFPVPQALLVDIAETMSRYGRVHI 97
>gi|403251986|ref|ZP_10918301.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
gi|402914731|gb|EJX35739.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
Length = 547
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLC 151
+ + AE PEHIH Y+LT L+ A + G + ++I+ L + S+ +VP ++ I
Sbjct: 30 IASFAELEKSPEHIHTYRLTPLGLWNARASGHDAEEVIDILIKYSRYAVPHALLVDIAET 89
Query: 152 TLSYGKVKL 160
YG+++L
Sbjct: 90 MSRYGRLRL 98
>gi|172041254|ref|YP_001800968.1| helicase [Corynebacterium urealyticum DSM 7109]
gi|171852558|emb|CAQ05534.1| putative helicase [Corynebacterium urealyticum DSM 7109]
Length = 555
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHEQAQEARTALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
I++ L+ S+ P ++ I YG++KL+ KH
Sbjct: 67 QIMDVLETYSRFPAPQPLLIDIADTMDRYGRLKLI-KH 103
>gi|363420727|ref|ZP_09308818.1| DNA repair helicase [Rhodococcus pyridinivorans AK37]
gi|359735394|gb|EHK84355.1| DNA repair helicase [Rhodococcus pyridinivorans AK37]
Length = 552
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEHIH Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHDRANEARQAIAPFAELERAPEHIHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVSHSRFAVPQALLVDIVDTMSRYGRLQLV 99
>gi|409389806|ref|ZP_11241607.1| putative ATP-dependent DNA helicase [Gordonia rubripertincta NBRC
101908]
gi|403200066|dbj|GAB84841.1| putative ATP-dependent DNA helicase [Gordonia rubripertincta NBRC
101908]
Length = 556
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAQAARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L S+ +VP ++ + +G+++LV KH
Sbjct: 65 QVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLV-KH 101
>gi|383806633|ref|ZP_09962195.1| DNA or RNA helicase of superfamily II [Candidatus Aquiluna sp.
IMCC13023]
gi|383299803|gb|EIC92416.1| DNA or RNA helicase of superfamily II [Candidatus Aquiluna sp.
IMCC13023]
Length = 542
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE+ A L AE PEHIH Y++T L+ A + G
Sbjct: 5 PLIVQSDRTVLLETDHADATTARHELAIFAELERAPEHIHTYRITKLGLWNARAAGHTAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
I+ LK+ SK +P + I +GK+++
Sbjct: 65 YILSSLKKWSKFDIPQLVSSEIENTIARFGKLEI 98
>gi|111021918|ref|YP_704890.1| DNA repair helicase [Rhodococcus jostii RHA1]
gi|110821448|gb|ABG96732.1| probable DNA repair helicase [Rhodococcus jostii RHA1]
Length = 584
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 30 PLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 89
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 90 QVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLV 124
>gi|453379441|dbj|GAC85763.1| putative ATP-dependent DNA helicase [Gordonia paraffinivorans NBRC
108238]
Length = 561
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAQAARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ + +G+++LV
Sbjct: 65 QVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLV 99
>gi|404260342|ref|ZP_10963634.1| putative ATP-dependent DNA helicase [Gordonia namibiensis NBRC
108229]
gi|403401180|dbj|GAC02044.1| putative ATP-dependent DNA helicase [Gordonia namibiensis NBRC
108229]
Length = 556
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAQAARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L S+ +VP ++ + +G+++LV KH
Sbjct: 65 QVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLV-KH 101
>gi|384106694|ref|ZP_10007601.1| DNA repair helicase [Rhodococcus imtechensis RKJ300]
gi|383834030|gb|EID73480.1| DNA repair helicase [Rhodococcus imtechensis RKJ300]
Length = 559
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|452959547|gb|EME64884.1| DNA repair helicase [Rhodococcus ruber BKS 20-38]
Length = 552
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHALANEARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVTHSRFAVPQPLLVDIVDTMARYGRLQLV 99
>gi|432335750|ref|ZP_19587311.1| DNA repair helicase, partial [Rhodococcus wratislaviensis IFP 2016]
gi|430777326|gb|ELB92688.1| DNA repair helicase, partial [Rhodococcus wratislaviensis IFP 2016]
Length = 537
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|419962442|ref|ZP_14478434.1| DNA repair helicase [Rhodococcus opacus M213]
gi|424854109|ref|ZP_18278467.1| DNA repair helicase [Rhodococcus opacus PD630]
gi|356664156|gb|EHI44249.1| DNA repair helicase [Rhodococcus opacus PD630]
gi|414572195|gb|EKT82896.1| DNA repair helicase [Rhodococcus opacus M213]
Length = 559
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|407276999|ref|ZP_11105469.1| DNA repair helicase [Rhodococcus sp. P14]
Length = 552
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHALANEARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVSHSRFAVPQPLLVDIVDTMARYGRLQLV 99
>gi|397735054|ref|ZP_10501757.1| type III restriction enzyme, res subunit [Rhodococcus sp. JVH1]
gi|396929279|gb|EJI96485.1| type III restriction enzyme, res subunit [Rhodococcus sp. JVH1]
Length = 559
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|226364428|ref|YP_002782210.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
gi|226242917|dbj|BAH53265.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
Length = 559
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|427422083|ref|ZP_18912266.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425757960|gb|EKU98814.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 557
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 96 AEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSY 155
AE V PEHIH Y+L+ S++ A + G+ +++ L+ +K +P+ + + + Y
Sbjct: 37 AELVKSPEHIHTYQLSPLSIWNARAAGMAVTEMVAALEENAKYPMPESVAQELETMGQRY 96
Query: 156 GKVKLVLKHNR------YFIESPFAEVLQK 179
G VL+ +R +++ AE LQ+
Sbjct: 97 GLT--VLRQHREQGLVLLVVDAALAEQLQR 124
>gi|409358860|ref|ZP_11237219.1| ATP-dependent DNA helicase [Dietzia alimentaria 72]
Length = 555
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A L AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEIDHEQAGDARQALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L + S+ VP ++ I YG+++LV
Sbjct: 65 QVVDVLIKFSRFPVPQPLLVDIADTMDRYGRLQLV 99
>gi|429729359|ref|ZP_19264022.1| helicase protein [Corynebacterium durum F0235]
gi|429149767|gb|EKX92735.1| helicase protein [Corynebacterium durum F0235]
Length = 553
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A L AE PEH+H Y++T +++ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHALADEARAALAPFAELERAPEHVHTYRITPLAVWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L+ S+ VP ++ + YG+VKL
Sbjct: 67 QLVDVLEHYSRFPVPHALLIDVVETMSRYGRVKL 100
>gi|319948963|ref|ZP_08023067.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
gi|319437368|gb|EFV92384.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
Length = 555
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A L AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEIDHEQAADARQALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ VP ++ I YG+++LV
Sbjct: 65 QVVDVLVSYSRFPVPQPLLVDIAETMARYGRLQLV 99
>gi|312138404|ref|YP_004005740.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
gi|311887743|emb|CBH47055.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
Length = 552
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERADEARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVNFSRFAVPQPLLVDIVDTMARYGRLQLV 99
>gi|429220366|ref|YP_007182010.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131229|gb|AFZ68244.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 568
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + I+LE + A + AE PEH+H Y++T SL+ A S G+
Sbjct: 9 PLIVQADRSIYLEVHNERAEAARAAIAPFAELEKSPEHLHTYRITPLSLWNAASAGITPE 68
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIES 171
++ L+ +K VP + + +G+++L+ N +++
Sbjct: 69 MMVGALETYAKFPVPPNVATDVRELAARWGRLQLIEAGNALALQA 113
>gi|256825951|ref|YP_003149911.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256689344|gb|ACV07146.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
Length = 550
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE Y A + AE PEH+H Y++T +L+ A + GL+
Sbjct: 4 PLIVQSDKSVLLEVDHDGYEAARRAIAPFAELERAPEHVHTYRITPLALWNARAAGLDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + YG++ L
Sbjct: 64 QVVDALVTHSRFPVPQPLLIDVAETMDRYGRLTL 97
>gi|325674600|ref|ZP_08154287.1| DNA repair helicase [Rhodococcus equi ATCC 33707]
gi|325554186|gb|EGD23861.1| DNA repair helicase [Rhodococcus equi ATCC 33707]
Length = 552
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERADEARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVNFSRFAVPQPLLVDIVDTMARYGRLQLV 99
>gi|213966421|ref|ZP_03394599.1| DNA or RNA helicase of superfamily II [Corynebacterium amycolatum
SK46]
gi|213950941|gb|EEB62345.1| DNA or RNA helicase of superfamily II [Corynebacterium amycolatum
SK46]
Length = 567
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE +P A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEVDNPEADAARAALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L+R SK VP ++ + YG++ L KH
Sbjct: 67 QVVDVLERFSKFPVPQPLLIDVAETMDRYGRLSLT-KH 103
>gi|444431450|ref|ZP_21226617.1| putative ATP-dependent DNA helicase [Gordonia soli NBRC 108243]
gi|443887859|dbj|GAC68338.1| putative ATP-dependent DNA helicase [Gordonia soli NBRC 108243]
Length = 555
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAGAARGAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I +G+++LV
Sbjct: 65 QVVDALVTYSRYAVPQPLLMDIVDTMGRFGRLQLV 99
>gi|418419027|ref|ZP_12992212.1| DNA helicase [Mycobacterium abscessus subsp. bolletii BD]
gi|364002200|gb|EHM23392.1| DNA helicase [Mycobacterium abscessus subsp. bolletii BD]
Length = 550
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHDQADAARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L S+ +VP ++ I YG+++LV KH
Sbjct: 65 QVVDALVTFSRYAVPQPLLVDIVDTMARYGRLQLV-KH 101
>gi|169627959|ref|YP_001701608.1| DNA helicase [Mycobacterium abscessus ATCC 19977]
gi|365868780|ref|ZP_09408329.1| DNA helicase [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|414584053|ref|ZP_11441193.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1215]
gi|418250922|ref|ZP_12877134.1| DNA helicase [Mycobacterium abscessus 47J26]
gi|419710724|ref|ZP_14238189.1| DNA helicase [Mycobacterium abscessus M93]
gi|419714657|ref|ZP_14242071.1| DNA helicase [Mycobacterium abscessus M94]
gi|420862860|ref|ZP_15326254.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0303]
gi|420867257|ref|ZP_15330643.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RA]
gi|420871691|ref|ZP_15335071.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RB]
gi|420881318|ref|ZP_15344685.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0304]
gi|420881914|ref|ZP_15345278.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0421]
gi|420887751|ref|ZP_15351107.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0422]
gi|420893040|ref|ZP_15356383.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0708]
gi|420902683|ref|ZP_15366014.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0817]
gi|420903476|ref|ZP_15366799.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1212]
gi|420913517|ref|ZP_15376829.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-R]
gi|420914723|ref|ZP_15378029.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-S]
gi|420920523|ref|ZP_15383820.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-S]
gi|420925608|ref|ZP_15388896.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-1108]
gi|420930047|ref|ZP_15393324.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-151-0930]
gi|420938886|ref|ZP_15402155.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-152-0914]
gi|420940295|ref|ZP_15403560.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-153-0915]
gi|420945886|ref|ZP_15409139.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-154-0310]
gi|420950472|ref|ZP_15413718.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0626]
gi|420954640|ref|ZP_15417880.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0107]
gi|420960178|ref|ZP_15423408.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-1231]
gi|420965152|ref|ZP_15428368.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0810-R]
gi|420970428|ref|ZP_15433628.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0921]
gi|420975958|ref|ZP_15439143.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0212]
gi|420981334|ref|ZP_15444507.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-R]
gi|420985956|ref|ZP_15449119.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0206]
gi|420990622|ref|ZP_15453775.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0307]
gi|420996443|ref|ZP_15459584.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-R]
gi|421000872|ref|ZP_15464005.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-S]
gi|421005871|ref|ZP_15468987.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0119-R]
gi|421011380|ref|ZP_15474478.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-R]
gi|421016200|ref|ZP_15479269.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-S]
gi|421021800|ref|ZP_15484851.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0731]
gi|421027459|ref|ZP_15490498.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-R]
gi|421032529|ref|ZP_15495553.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-S]
gi|421038231|ref|ZP_15501242.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-R]
gi|421046892|ref|ZP_15509892.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-S]
gi|421047622|ref|ZP_15510618.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169239926|emb|CAM60954.1| Probable DNA helicase [Mycobacterium abscessus]
gi|353449547|gb|EHB97944.1| DNA helicase [Mycobacterium abscessus 47J26]
gi|363999710|gb|EHM20912.1| DNA helicase [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|382940723|gb|EIC65046.1| DNA helicase [Mycobacterium abscessus M93]
gi|382945347|gb|EIC69643.1| DNA helicase [Mycobacterium abscessus M94]
gi|392074380|gb|EIU00217.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RA]
gi|392074534|gb|EIU00370.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0303]
gi|392075880|gb|EIU01713.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RB]
gi|392086227|gb|EIU12052.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0304]
gi|392090969|gb|EIU16780.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0421]
gi|392093358|gb|EIU19156.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0422]
gi|392100044|gb|EIU25838.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0817]
gi|392106804|gb|EIU32588.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0708]
gi|392110021|gb|EIU35794.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1212]
gi|392115511|gb|EIU41280.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-R]
gi|392119205|gb|EIU44973.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1215]
gi|392124797|gb|EIU50556.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-S]
gi|392130359|gb|EIU56105.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-S]
gi|392140159|gb|EIU65889.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-151-0930]
gi|392140683|gb|EIU66410.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-1108]
gi|392144401|gb|EIU70126.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-152-0914]
gi|392156727|gb|EIU82427.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-153-0915]
gi|392159094|gb|EIU84790.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-154-0310]
gi|392160249|gb|EIU85940.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0626]
gi|392173038|gb|EIU98707.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0212]
gi|392174857|gb|EIV00522.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0921]
gi|392177132|gb|EIV02790.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-R]
gi|392188760|gb|EIV14395.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0206]
gi|392190644|gb|EIV16274.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-R]
gi|392190807|gb|EIV16435.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0307]
gi|392203026|gb|EIV28622.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-S]
gi|392203341|gb|EIV28935.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0119-R]
gi|392212690|gb|EIV38250.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-R]
gi|392216822|gb|EIV42361.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-S]
gi|392217370|gb|EIV42908.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0731]
gi|392226445|gb|EIV51959.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-R]
gi|392232116|gb|EIV57619.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-S]
gi|392233419|gb|EIV58918.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-R]
gi|392236345|gb|EIV61843.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-S]
gi|392241787|gb|EIV67274.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense CCUG 48898]
gi|392256246|gb|EIV81705.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-1231]
gi|392256433|gb|EIV81890.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0107]
gi|392258131|gb|EIV83578.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0810-R]
Length = 550
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHDQADAARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L S+ +VP ++ I YG+++LV KH
Sbjct: 65 QVVDALVTFSRYAVPQPLLVDIVDTMARYGRLQLV-KH 101
>gi|226187251|dbj|BAH35355.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
Length = 552
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERAGDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVSFSRFAVPQPLLVDIVDTMARYGRLQLV 99
>gi|379706890|ref|YP_005262095.1| putative DNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374844389|emb|CCF61451.1| putative DNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 552
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHELADAARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L S+ +VP ++ + YG+++LV KH
Sbjct: 65 QVVDALVSFSRYAVPQPLLVDVVDTMARYGRLQLV-KH 101
>gi|357400022|ref|YP_004911947.1| ATP-dependent DNA helicase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|386356062|ref|YP_006054308.1| helicase domain-containing protein [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337766431|emb|CCB75142.1| putative ATP-dependent DNA helicase [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365806569|gb|AEW94785.1| helicase domain protein [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 550
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y++T L+ A + G +
Sbjct: 4 PLIVQSDKTLLLEVDHPRADECRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVL--KHNRYFIESPFAEVLQKLLKDP 184
+++ L S+ VP ++ I YG++ L H + A VL+++L+
Sbjct: 64 QVVDALVSFSRYPVPHALLVDIAETMDRYGRLTLTKDPAHGLVLATTDRA-VLEEVLRSK 122
Query: 185 VIQ---DCRLRRDT 195
IQ R+ +DT
Sbjct: 123 KIQPLVGARIDQDT 136
>gi|255325614|ref|ZP_05366713.1| DNA or RNA helicase of superfamily II [Corynebacterium
tuberculostearicum SK141]
gi|255297327|gb|EET76645.1| DNA or RNA helicase of superfamily II [Corynebacterium
tuberculostearicum SK141]
Length = 541
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T +L+ A + G + +++ L+ S+ VP ++ + YG+V+L
Sbjct: 39 PEHVHTYRITPLALWNARAAGHDAEQVVDVLENYSRFPVPQALLVDVAETMSRYGRVRL 97
>gi|311740929|ref|ZP_07714756.1| ATP-dependent DNA helicase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304449|gb|EFQ80525.1| ATP-dependent DNA helicase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 541
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T +L+ A + G + +++ L+ S+ VP ++ + YG+V+L
Sbjct: 39 PEHVHTYRITPLALWNARAAGHDAEQVVDVLENYSRFPVPQALLVDVAETMSRYGRVRL 97
>gi|256397207|ref|YP_003118771.1| helicase domain-containing protein [Catenulispora acidiphila DSM
44928]
gi|256363433|gb|ACU76930.1| helicase domain protein [Catenulispora acidiphila DSM 44928]
Length = 548
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +I+ L R ++ VP ++ I YG+++L
Sbjct: 38 PEHIHTYRVTPLALWNARAAGHDAEQVIDALLRHTRYPVPHSLLVDIADTMDRYGRLRL- 96
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
L+H + +E+ VL+++++ +Q
Sbjct: 97 LQHPTHGLVLETTDVPVLEEVIRHKKVQ 124
>gi|315442723|ref|YP_004075602.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261026|gb|ADT97767.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 549
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHIHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|145222289|ref|YP_001132967.1| type III restriction enzyme, res subunit [Mycobacterium gilvum
PYR-GCK]
gi|145214775|gb|ABP44179.1| type III restriction enzyme, res subunit [Mycobacterium gilvum
PYR-GCK]
Length = 549
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHIHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|383775537|ref|YP_005460103.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
gi|381368769|dbj|BAL85587.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
Length = 553
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ + + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAQACRMAIAPFAELERSPEHVHTYRLTPLGLWNSRAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L + S+ VP ++ I YG+++L+
Sbjct: 65 SVVDALIKFSRYPVPHALLVDIAETMDRYGRLQLL 99
>gi|418046889|ref|ZP_12684977.1| type III restriction protein res subunit [Mycobacterium rhodesiae
JS60]
gi|353192559|gb|EHB58063.1| type III restriction protein res subunit [Mycobacterium rhodesiae
JS60]
Length = 549
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHIHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|256374606|ref|YP_003098266.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
gi|255918909|gb|ACU34420.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
Length = 550
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPAADEARAAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ VP ++ + YG+++L
Sbjct: 65 QVVDALVRFSRYPVPQPLLVDVVDVMGRYGRLQL 98
>gi|269957708|ref|YP_003327497.1| type III restriction protein res subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269306389|gb|ACZ31939.1| type III restriction protein res subunit [Xylanimonas
cellulosilytica DSM 15894]
Length = 558
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEH+H Y+LT+ L+ A + G +
Sbjct: 5 PLIVQSDKSLLLEVEHPRADECRRAIAPFAELERAPEHVHTYRLTSLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
++ L S+ VP ++ + YG++ L
Sbjct: 65 QVVNTLIEFSRYPVPHALLVDVAETMDRYGRLTL 98
>gi|374607824|ref|ZP_09680624.1| type III restriction protein res subunit [Mycobacterium tusciae
JS617]
gi|373554386|gb|EHP80965.1| type III restriction protein res subunit [Mycobacterium tusciae
JS617]
Length = 552
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 43 PEHIHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 102
Query: 162 LK--HNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLK 210
H + A VL+++L++ I R +D+ + N ++K
Sbjct: 103 KSPVHGLTLVSLDRA-VLEEVLRNKKIAPMLGMRIDDDTVQVHNSERGRVK 152
>gi|54022596|ref|YP_116838.1| DNA helicase [Nocardia farcinica IFM 10152]
gi|54014104|dbj|BAD55474.1| putative DNA helicase [Nocardia farcinica IFM 10152]
Length = 552
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHESADMARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+++ L S+ +VP ++ I YG+++LV KH
Sbjct: 65 QVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV-KH 101
>gi|375139772|ref|YP_005000421.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359820393|gb|AEV73206.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 549
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHIHTYRITPLALWNARAAGHDAEQVVDALVTFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|108801448|ref|YP_641645.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS]
gi|119870601|ref|YP_940553.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS]
gi|126437433|ref|YP_001073124.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
gi|108771867|gb|ABG10589.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS]
gi|119696690|gb|ABL93763.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS]
gi|126237233|gb|ABO00634.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
Length = 549
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHIHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LK--HNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGL 216
H + A VL+++L++ I R +D T+I A ++ + Q L
Sbjct: 100 KSPVHGLVLVSLDRA-VLEEVLRNKKIAPMLGARIDDD--TVIVHASERGRVKQMLL 153
>gi|260579792|ref|ZP_05847645.1| ATP-dependent DNA helicase, partial [Corynebacterium jeikeium ATCC
43734]
gi|258602079|gb|EEW15403.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
Length = 176
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 76 IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRL 135
+ LE + A L AE PEH+H Y++T +L+ A + G + +++ L+
Sbjct: 6 VLLEIDHEQAQEARTALAPFAELERAPEHVHTYRITPLALWNARAAGHDAEQVMDVLETY 65
Query: 136 SKTSVPDGIVEFINLCTLSYGKVKLV 161
S+ VP ++ I YG++KL+
Sbjct: 66 SRFPVPQPLLIDIADTMDRYGRLKLI 91
>gi|269125068|ref|YP_003298438.1| helicase domain-containing protein [Thermomonospora curvata DSM
43183]
gi|268310026|gb|ACY96400.1| helicase domain protein [Thermomonospora curvata DSM 43183]
Length = 550
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T +L+ A + G + +++ L R S+ VP ++ + YG+++L
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDMLLRYSRYPVPHALLVDVADTMSRYGRLRL 98
>gi|359150058|ref|ZP_09182930.1| ATP-dependent DNA helicase [Streptomyces sp. S4]
Length = 540
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y+LT L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 33 PEHIHTYRLTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMDRYGRLTLT 92
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ IQ
Sbjct: 93 -KHPAHGLVLTSTDRPVLEEILRSKKIQ 119
>gi|421739802|ref|ZP_16178094.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
gi|406691812|gb|EKC95541.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
Length = 563
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y+LT L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 56 PEHIHTYRLTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMDRYGRLTLT 115
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ IQ
Sbjct: 116 -KHPAHGLVLTSTDRPVLEEILRSKKIQ 142
>gi|451943541|ref|YP_007464177.1| DNA helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
gi|451902928|gb|AGF71815.1| DNA helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
Length = 555
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T +L+ A + G + +++ L+R S+ VP ++ + YG+V L
Sbjct: 42 PEHVHTYRITPLALWNARAAGHDAEQVVDVLERYSRFPVPQPLLIDVAEIMSRYGRVTL 100
>gi|120406004|ref|YP_955833.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii
PYR-1]
gi|119958822|gb|ABM15827.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii
PYR-1]
Length = 549
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVTFSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|348173118|ref|ZP_08880012.1| ATP-dependent DNA helicase [Saccharopolyspora spinosa NRRL 18395]
Length = 553
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHDLADEARTGIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ VP ++ I +G+++L
Sbjct: 65 QVVDGLVRYSRYPVPQPLLVDIVETMGRFGRLQL 98
>gi|295394516|ref|ZP_06804739.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294972695|gb|EFG48547.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 666
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 108 YKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY 167
Y+ TA S+ A+ GL T I+E ++R+S T VP + I G+V +
Sbjct: 440 YRFTAASITRALESGLSTAAILELIERVSSTEVPGPLDFLIRDTAAKLGRVTVSAARGVI 499
Query: 168 FIESPFAEVLQKLLKDPVIQDCRLRR 193
+ P E L L+ DP+ +L R
Sbjct: 500 VVNDP--EELDPLIADPLFAAAKLTR 523
>gi|326332145|ref|ZP_08198429.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
Broad-1]
gi|325950116|gb|EGD42172.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
Broad-1]
Length = 549
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y+LT L+ A + G + +++ L S+ VP ++ + YG+++L
Sbjct: 40 PEHIHTYRLTPLGLWNARAAGHDAEQVVDTLLEFSRYPVPHSLLVDVAETMARYGRLRL 98
>gi|291453278|ref|ZP_06592668.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
gi|291356227|gb|EFE83129.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
Length = 545
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y+LT L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 38 PEHIHTYRLTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMDRYGRLTLT 97
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ IQ
Sbjct: 98 -KHPAHGLVLTSTDRPVLEEILRSKKIQ 124
>gi|229488859|ref|ZP_04382725.1| DNA or RNA helicase of superfamily II [Rhodococcus erythropolis
SK121]
gi|453071394|ref|ZP_21974545.1| ATP-dependent DNA helicase [Rhodococcus qingshengii BKS 20-40]
gi|229324363|gb|EEN90118.1| DNA or RNA helicase of superfamily II [Rhodococcus erythropolis
SK121]
gi|452759438|gb|EME17801.1| ATP-dependent DNA helicase [Rhodococcus qingshengii BKS 20-40]
Length = 552
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHERAGDARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I YG+++LV
Sbjct: 65 QVVDALVSYSRFAVPQPLLVDIVDTMARYGRLQLV 99
>gi|296169623|ref|ZP_06851243.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895889|gb|EFG75584.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 549
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|453052341|gb|EME99825.1| ATP-dependent DNA helicase [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 549
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T L+ A + G + +++ L S+ VP ++ + YG+++LV
Sbjct: 39 PEHVHTYRVTPLGLWNARAAGHDAEQVVDALVSHSRYPVPHALLVDVAETMARYGRLRLV 98
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + +E+ VL+++L+ I+
Sbjct: 99 -KHPVHGLVLETTDRPVLEEILRSKKIK 125
>gi|324998370|ref|ZP_08119482.1| DNA/RNA helicase, superfamily II [Pseudonocardia sp. P1]
Length = 553
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHSDAEQARASIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L R S+ VP ++ + YG+++L
Sbjct: 65 QVVDALVRWSRYPVPQPLLVDVVDTMGRYGRLQL 98
>gi|440776231|ref|ZP_20955081.1| hypothetical protein D522_04953 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436723722|gb|ELP47507.1| hypothetical protein D522_04953 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 542
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|357411964|ref|YP_004923700.1| helicase domain-containing protein [Streptomyces flavogriseus ATCC
33331]
gi|320009333|gb|ADW04183.1| helicase domain protein [Streptomyces flavogriseus ATCC 33331]
Length = 547
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y+LT L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRLTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMARYGRLTLS 98
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ---DCRLRRDT 195
KH + + S VL+++L+ +Q RL DT
Sbjct: 99 -KHPVHGLVLTSNDRPVLEEILRSKKVQPLVGARLDPDT 136
>gi|336319557|ref|YP_004599525.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
gi|336103138|gb|AEI10957.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 546
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y+LT L+ A + G + +++ L S+ VP ++ + YG+++LV
Sbjct: 39 PEHVHTYRLTPLGLWNARAAGHDAEQVVDVLLEYSRYPVPHALLVDVAETMARYGRLQLV 98
>gi|330465290|ref|YP_004403033.1| helicase domain-containing protein [Verrucosispora maris AB-18-032]
gi|328808261|gb|AEB42433.1| helicase domain-containing protein [Verrucosispora maris AB-18-032]
Length = 559
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEIDHPDAQACRMAIAPFAELERSPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ + YG+++L
Sbjct: 65 GVVDALIKYSRYPVPHALLVDVAETMDRYGRLQL 98
>gi|238062309|ref|ZP_04607018.1| helicase [Micromonospora sp. ATCC 39149]
gi|237884120|gb|EEP72948.1| helicase [Micromonospora sp. ATCC 39149]
Length = 559
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEIDHPDAQSCRMAIAPFAELERSPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ + YG+++L
Sbjct: 65 AVVDALLKYSRYPVPHALLVDVAETMDRYGRLQL 98
>gi|400537832|ref|ZP_10801354.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
colombiense CECT 3035]
gi|400328876|gb|EJO86387.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
colombiense CECT 3035]
Length = 542
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 92
Query: 162 LKH 164
KH
Sbjct: 93 -KH 94
>gi|41406897|ref|NP_959733.1| hypothetical protein MAP0799c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417747240|ref|ZP_12395714.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|41395247|gb|AAS03116.1| hypothetical protein MAP_0799c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336461259|gb|EGO40134.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 549
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|400975239|ref|ZP_10802470.1| DNA repair helicase [Salinibacterium sp. PAMC 21357]
Length = 548
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A L AE PEHIH Y++T L+ A + G +
Sbjct: 8 PLIVQSDRTVLLEVAHPLAEDARHDLAVFAELERAPEHIHTYRITRLGLWNARAAGHDAA 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
++E L++ SK +P + I YG++
Sbjct: 68 AMLETLEKYSKFPIPQSVSVDIAETVGRYGRL 99
>gi|118466248|ref|YP_880250.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
104]
gi|254773876|ref|ZP_05215392.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
subsp. avium ATCC 25291]
gi|118167535|gb|ABK68432.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
104]
Length = 549
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|119718166|ref|YP_925131.1| helicase domain-containing protein [Nocardioides sp. JS614]
gi|119538827|gb|ABL83444.1| helicase domain protein [Nocardioides sp. JS614]
Length = 546
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y+LT L+ A + G + +++ L S+ +VP ++ + YG+++L
Sbjct: 40 PEHVHTYRLTPLGLWNARAAGHDAEQVVDTLLEYSRYAVPHALLVDVAETMARYGRLRL 98
>gi|433650069|ref|YP_007295071.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
gi|433299846|gb|AGB25666.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
Length = 549
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDVMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|254818296|ref|ZP_05223297.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
Length = 549
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|443304196|ref|ZP_21033984.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
H4Y]
gi|442765760|gb|ELR83754.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
H4Y]
Length = 542
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|387874253|ref|YP_006304557.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
MOTT36Y]
gi|386787711|gb|AFJ33830.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
MOTT36Y]
Length = 542
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|379745585|ref|YP_005336406.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
gi|379752870|ref|YP_005341542.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-02]
gi|379760310|ref|YP_005346707.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-64]
gi|406029195|ref|YP_006728086.1| DNA repair helicase RAD25 [Mycobacterium indicus pranii MTCC 9506]
gi|378797949|gb|AFC42085.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
gi|378803086|gb|AFC47221.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-02]
gi|378808252|gb|AFC52386.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-64]
gi|405127742|gb|AFS12997.1| DNA repair helicase RAD25 [Mycobacterium indicus pranii MTCC 9506]
Length = 549
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|254387008|ref|ZP_05002287.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
gi|194345832|gb|EDX26798.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
Length = 547
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEHIH Y++T L+ A + G +
Sbjct: 4 PLIVQSDKTLLLEVDHELAGAARRAIAPFAELERAPEHIHTYRITPLGLWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + YG++ L
Sbjct: 64 QVVDALVEFSRYPVPHALLVDVAETMARYGRLTL 97
>gi|443288418|ref|ZP_21027512.1| Putative DNA repair helicase [Micromonospora lupini str. Lupac 08]
gi|385888559|emb|CCH15586.1| Putative DNA repair helicase [Micromonospora lupini str. Lupac 08]
Length = 559
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEIDHPDAQACRMAIAPFAELERSPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L + S+ VP ++ + YG+++L
Sbjct: 65 GVVDSLIKYSRYPVPHALLVDVADTMDRYGRLQL 98
>gi|332669171|ref|YP_004452179.1| helicase domain-containing protein [Cellulomonas fimi ATCC 484]
gi|332338209|gb|AEE44792.1| helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 548
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y+LT L+ A + G + +++ L S+ VP ++ + YG+++LV
Sbjct: 40 PEHVHTYRLTPLGLWNARAAGHDAEQVVDVLLEYSRYPVPHALLVDVAETMSRYGRLQLV 99
>gi|443674395|ref|ZP_21139427.1| putative ATP-dependent DNA helicase [Rhodococcus sp. AW25M09]
gi|443413022|emb|CCQ17766.1| putative ATP-dependent DNA helicase [Rhodococcus sp. AW25M09]
Length = 551
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|145596461|ref|YP_001160758.1| helicase domain-containing protein [Salinispora tropica CNB-440]
gi|145305798|gb|ABP56380.1| helicase domain protein [Salinispora tropica CNB-440]
Length = 581
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ A + G +
Sbjct: 27 PLIVQSDKTLLLEIEHPDAQACRLAIAPFAELERSPEHVHTYRLTPLGLWNARAAGHDAE 86
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ + YG+++L+
Sbjct: 87 GVVNALITYSRYPVPHALLVDVAETMDRYGRLRLI 121
>gi|297193652|ref|ZP_06911050.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|297151855|gb|EDY65705.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 551
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ + YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEFSRYPVPHALLVDVAETMARYGRLTLS 98
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ IQ
Sbjct: 99 -KHPTHGLVLTSTDRPVLEEILRSKKIQ 125
>gi|340793573|ref|YP_004759036.1| hypothetical protein CVAR_0611 [Corynebacterium variabile DSM
44702]
gi|340533483|gb|AEK35963.1| hypothetical protein CVAR_0611 [Corynebacterium variabile DSM
44702]
Length = 548
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A L AE PEH+H Y++T +L+ A + G +
Sbjct: 7 PLIVQSDKTVLLEIDHPAAAEARIALAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 66
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH-NRYFIESPFAEVLQKLLK 182
++ L+ S+ VP ++ I YG++ L + +ES A VL ++ +
Sbjct: 67 QVVHVLETYSRFPVPQPLLVDIAETMGRYGRLTLATSPVHGLVLESSDAAVLAEIQR 123
>gi|229819343|ref|YP_002880869.1| type III restriction protein res subunit [Beutenbergia cavernae DSM
12333]
gi|229565256|gb|ACQ79107.1| type III restriction protein res subunit [Beutenbergia cavernae DSM
12333]
Length = 548
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y+LT L+ A + G + +++ L S+ VP ++ + YG+++LV
Sbjct: 40 PEHVHTYRLTPLGLWNARAAGHDAEQVVDTLLAYSRYPVPHALLVDVAETMSRYGRLQLV 99
>gi|111226036|ref|YP_716830.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
gi|111153568|emb|CAJ65326.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
Length = 573
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T +L+ A + G + +++ L R S+ +VP ++ + YG+++L
Sbjct: 35 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVRHSRYAVPHALLVDVADTMDRYGRLRL 93
>gi|408679846|ref|YP_006879673.1| putative ATP-dependent DNA helicase [Streptomyces venezuelae ATCC
10712]
gi|328884175|emb|CCA57414.1| putative ATP-dependent DNA helicase [Streptomyces venezuelae ATCC
10712]
Length = 546
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S PL V + + LE + + AE PEHIH Y+LT L+ A + G +
Sbjct: 2 SGPLIVQSDKTLLLEVDHELADDCRRAIAPFAELERAPEHIHTYRLTPLGLWNARAAGHD 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
+++ L S+ VP ++ I YG++ L KH + + S VL+++L+
Sbjct: 62 AEQVVDALVEYSRYPVPHALLVDIAETMDRYGRLTLS-KHPAHGLVLTSTDRPVLEEILR 120
Query: 183 DPVIQ 187
+Q
Sbjct: 121 SRKVQ 125
>gi|404445592|ref|ZP_11010728.1| type III restriction enzyme, res subunit [Mycobacterium vaccae ATCC
25954]
gi|403651886|gb|EJZ06978.1| type III restriction enzyme, res subunit [Mycobacterium vaccae ATCC
25954]
Length = 542
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHIHTYRITPLALWNARAAGHDAEQVVDALVTYSRYAVPQPLLVDIVDTMGRYGRLQLV 92
Query: 162 LKH 164
KH
Sbjct: 93 -KH 94
>gi|385680851|ref|ZP_10054779.1| DNA/RNA helicase, superfamily II [Amycolatopsis sp. ATCC 39116]
Length = 545
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P+ A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHPMADDARIAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ VP ++ I +G++++
Sbjct: 65 QVVDALTTYSRFPVPQPLLIDIVDTMARFGRLQIT 99
>gi|271970086|ref|YP_003344282.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270513261|gb|ACZ91539.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 548
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ VP ++ I YG+++L
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALIGYSRYPVPHALLVDIAETMARYGRLRLE 99
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ IQ
Sbjct: 100 -KHPVHGLVLTSTDRAVLEEVLRSKKIQ 126
>gi|159039860|ref|YP_001539113.1| helicase domain-containing protein [Salinispora arenicola CNS-205]
gi|157918695|gb|ABW00123.1| helicase domain protein [Salinispora arenicola CNS-205]
Length = 559
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEIDHPDSQACRLAIAPFAELERSPEHVHTYRLTPLGLWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ + YG+++LV
Sbjct: 65 GVVNALITYSRYPVPHALLVDVAETMDRYGRLQLV 99
>gi|296128585|ref|YP_003635835.1| helicase domain-containing protein [Cellulomonas flavigena DSM
20109]
gi|296020400|gb|ADG73636.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
Length = 548
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y+LT L+ A + G + +++ L S+ VP ++ + YG+++LV
Sbjct: 40 PEHVHTYRLTPLGLWNARAAGHDAEQVVDTLLEYSRYPVPHALLVDVAETMSRYGRLQLV 99
>gi|289568824|ref|ZP_06449051.1| DNA helicase ercc3 [Mycobacterium tuberculosis T17]
gi|289542578|gb|EFD46226.1| DNA helicase ercc3 [Mycobacterium tuberculosis T17]
Length = 510
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 21 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 80
>gi|453362685|dbj|GAC81440.1| putative ATP-dependent DNA helicase [Gordonia malaquae NBRC 108250]
Length = 544
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEHIH Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEMDHPDAAKARAAIAPFAELERAPEHIHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY------FIESPFAEVLQKL 180
+++ L S+ VP ++ I +G+++LV KH + F + E+L+
Sbjct: 65 QVVDALVTYSRFPVPQPLLVDIVDTMGRFGRLQLV-KHPAHGLTLVSFDRAVLEEILRNK 123
Query: 181 LKDPVIQDCRLRRDT 195
P++ D RL DT
Sbjct: 124 KVAPMLGD-RLDEDT 137
>gi|407641888|ref|YP_006805647.1| putative DNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407304772|gb|AFT98672.1| putative DNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 545
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + YG+++LV
Sbjct: 33 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVSFSRYAVPQPLLVDVVDTMARYGRLQLV 92
Query: 162 LKH 164
KH
Sbjct: 93 -KH 94
>gi|383826946|ref|ZP_09982061.1| hypothetical protein MXEN_18794 [Mycobacterium xenopi RIVM700367]
gi|383331524|gb|EID10020.1| hypothetical protein MXEN_18794 [Mycobacterium xenopi RIVM700367]
Length = 543
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
Query: 162 LKH 164
KH
Sbjct: 93 -KH 94
>gi|377564040|ref|ZP_09793368.1| putative ATP-dependent DNA helicase [Gordonia sputi NBRC 100414]
gi|377528930|dbj|GAB38533.1| putative ATP-dependent DNA helicase [Gordonia sputi NBRC 100414]
Length = 558
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 8 PLIVQSDKTLLLEVDHPDAAAARGAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I +G+++LV
Sbjct: 68 QVVDALVSFSRYAVPQPLLMDIVDTMGRFGRLQLV 102
>gi|333372010|ref|ZP_08463947.1| hypothetical protein HMPREF9374_1692 [Desmospora sp. 8437]
gi|332975086|gb|EGK11991.1| hypothetical protein HMPREF9374_1692 [Desmospora sp. 8437]
Length = 604
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDII 129
V P+ + L F+P+ H FL+A E + Y L S+ GL ++
Sbjct: 335 VKPDLEVLLPPFTPL---THRFLLAQFADCMGGETLSSYMLNPDSVRRGARRGLSAERML 391
Query: 130 EYLKRLSKTSVPDGIVEFINLCT 152
+ L+ +S VPD +VE I L
Sbjct: 392 DTLREISGGPVPDSVVENIRLWA 414
>gi|118468039|ref|YP_889939.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
smegmatis str. MC2 155]
gi|118169326|gb|ABK70222.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
smegmatis str. MC2 155]
Length = 585
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ VP ++ I YG+++LV
Sbjct: 76 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYPVPQPLLVDIVDTMARYGRLQLV 135
Query: 162 LKH 164
KH
Sbjct: 136 -KH 137
>gi|309812293|ref|ZP_07706048.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
gi|308433598|gb|EFP57475.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
Length = 543
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T L+ A + GL+ +++ L S+ VP ++ + YG++ L
Sbjct: 40 PEHVHTYRVTPLGLWNARAAGLDAETVVDALITHSRFPVPQPLLLDVAETMDRYGRLVLE 99
Query: 162 LKHNRYFIESPFAEVLQKLLK 182
++ + S VL+++L+
Sbjct: 100 KDGDQLVLHSTDKPVLEEVLR 120
>gi|379056789|ref|ZP_09847315.1| DNA/RNA helicase [Serinicoccus profundi MCCC 1A05965]
Length = 562
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T L+ A + G +
Sbjct: 4 PLIVQSDKTLLLEVDHPDAETARRDIAPFAELERAPEHVHTYRVTPLGLWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
++ L S+ VP ++ + YG++ L
Sbjct: 64 QVVHALVEHSRYPVPQALLVDVAETMARYGRLTLT 98
>gi|398783543|ref|ZP_10547006.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
gi|396995855|gb|EJJ06859.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
Length = 550
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQFSRYPVPHALLVDIAETMSRYGRLTLT 98
Query: 162 LKHNRYFIESPFAE--VLQKLLKDPVIQ---DCRLRRDT 195
KH + + + VL+++L+ +Q RL DT
Sbjct: 99 -KHPAHGLVLTCTDRPVLEEILRSKKVQPLVGARLDPDT 136
>gi|424946614|ref|ZP_18362310.1| DNA helicase [Mycobacterium tuberculosis NCGM2209]
gi|358231129|dbj|GAA44621.1| DNA helicase [Mycobacterium tuberculosis NCGM2209]
Length = 534
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 25 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 84
>gi|433640979|ref|YP_007286738.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070008]
gi|432157527|emb|CCK54805.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070008]
Length = 542
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRFAVPQPLLVDIVDTMARYGRLQLV 92
>gi|31792049|ref|NP_854542.1| DNA helicase [Mycobacterium bovis AF2122/97]
gi|121636784|ref|YP_977007.1| DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224989255|ref|YP_002643942.1| DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|378770618|ref|YP_005170351.1| putative DNA helicase [Mycobacterium bovis BCG str. Mexico]
gi|449062894|ref|YP_007429977.1| DNA helicase [Mycobacterium bovis BCG str. Korea 1168P]
gi|31617636|emb|CAD93746.1| PROBABLE DNA HELICASE [Mycobacterium bovis AF2122/97]
gi|121492431|emb|CAL70899.1| Probable dna helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224772368|dbj|BAH25174.1| putative DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|341600800|emb|CCC63471.1| probable DNA helicase [Mycobacterium bovis BCG str. Moreau RDJ]
gi|356592939|gb|AET18168.1| Putative DNA helicase [Mycobacterium bovis BCG str. Mexico]
gi|449031402|gb|AGE66829.1| DNA helicase [Mycobacterium bovis BCG str. Korea 1168P]
Length = 542
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|357391321|ref|YP_004906162.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
gi|311897798|dbj|BAJ30206.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
Length = 543
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEH+H Y++T L+ A + G +
Sbjct: 4 PLIVQSDKTLLLEIDHPQAAECRRVIAPFAELERAPEHVHTYRVTPLGLWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + YG+++L
Sbjct: 64 QVVDALVTYSRYPVPHALLVDVADTMGRYGRLQL 97
>gi|433629951|ref|YP_007263579.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070010]
gi|432161544|emb|CCK58889.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070010]
Length = 542
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|15840274|ref|NP_335311.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
gi|13880434|gb|AAK45125.1| ATP-dependent DNA helicase, putative [Mycobacterium tuberculosis
CDC1551]
Length = 542
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|134097156|ref|YP_001102817.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291005387|ref|ZP_06563360.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133909779|emb|CAL99891.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 553
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVEHAQADEARIAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVL--KHNRYFIESPFAEVLQKLLKDP 184
+++ L R S+ VP ++ I +G+++L H + A VL+++L++
Sbjct: 65 QVVDGLVRHSRYPVPQPLLVDIVETMGRFGRLQLTNDPAHGLVLVSLDRA-VLEEVLRNK 123
Query: 185 VIQ 187
IQ
Sbjct: 124 KIQ 126
>gi|257057395|ref|YP_003135227.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256587267|gb|ACU98400.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 548
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHELAEDARIAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
+++ L R S+ VP ++ I +G++++ HN
Sbjct: 65 QVVDALTRYSRFPVPQPLLIDIVDTMGRFGRLQI---HN 100
>gi|340625875|ref|YP_004744327.1| putative DNA helicase ERCC3 [Mycobacterium canettii CIPT 140010059]
gi|433625946|ref|YP_007259575.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140060008]
gi|340004065|emb|CCC43201.1| putative DNA helicase ERCC3 [Mycobacterium canettii CIPT 140010059]
gi|432153552|emb|CCK50775.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140060008]
Length = 542
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|148660638|ref|YP_001282161.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Ra]
gi|148822069|ref|YP_001286823.1| DNA helicase ercc3 [Mycobacterium tuberculosis F11]
gi|253800117|ref|YP_003033118.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 1435]
gi|254549837|ref|ZP_05140284.1| DNA helicase ercc3 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289446426|ref|ZP_06436170.1| DNA helicase ercc3 [Mycobacterium tuberculosis CPHL_A]
gi|289573483|ref|ZP_06453710.1| DNA helicase ercc3 [Mycobacterium tuberculosis K85]
gi|289744587|ref|ZP_06503965.1| DNA helicase ercc3 [Mycobacterium tuberculosis 02_1987]
gi|289752915|ref|ZP_06512293.1| DNA helicase ercc3 [Mycobacterium tuberculosis EAS054]
gi|289756947|ref|ZP_06516325.1| DNA helicase ercc3 [Mycobacterium tuberculosis T85]
gi|289760993|ref|ZP_06520371.1| DNA helicase ercc3 [Mycobacterium tuberculosis GM 1503]
gi|297730363|ref|ZP_06959481.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN R506]
gi|298524354|ref|ZP_07011763.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306774985|ref|ZP_07413322.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu001]
gi|306782101|ref|ZP_07420438.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu002]
gi|306783529|ref|ZP_07421851.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu003]
gi|306792234|ref|ZP_07430536.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu005]
gi|306796632|ref|ZP_07434934.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu006]
gi|306802519|ref|ZP_07439187.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu008]
gi|306966897|ref|ZP_07479558.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu009]
gi|307078820|ref|ZP_07487990.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu011]
gi|308375273|ref|ZP_07443369.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu007]
gi|308378741|ref|ZP_07483753.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu010]
gi|313657689|ref|ZP_07814569.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN V2475]
gi|339630926|ref|YP_004722568.1| DNA helicase [Mycobacterium africanum GM041182]
gi|375297350|ref|YP_005101617.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|385997642|ref|YP_005915940.1| DNA helicase ErcC3 [Mycobacterium tuberculosis CTRI-2]
gi|392385571|ref|YP_005307200.1| ercc3 [Mycobacterium tuberculosis UT205]
gi|392433556|ref|YP_006474600.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 605]
gi|397672677|ref|YP_006514212.1| DNA excision repair protein ERCC-3 [Mycobacterium tuberculosis
H37Rv]
gi|422811811|ref|ZP_16860205.1| DNA helicase ercc3 [Mycobacterium tuberculosis CDC1551A]
gi|424805643|ref|ZP_18231074.1| DNA helicase ercc3 [Mycobacterium tuberculosis W-148]
gi|448824750|ref|NP_215376.3| DNA helicase Ercc3 [Mycobacterium tuberculosis H37Rv]
gi|148504790|gb|ABQ72599.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
H37Ra]
gi|148720596|gb|ABR05221.1| DNA helicase ercc3 [Mycobacterium tuberculosis F11]
gi|253321620|gb|ACT26223.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 1435]
gi|289419384|gb|EFD16585.1| DNA helicase ercc3 [Mycobacterium tuberculosis CPHL_A]
gi|289537914|gb|EFD42492.1| DNA helicase ercc3 [Mycobacterium tuberculosis K85]
gi|289685115|gb|EFD52603.1| DNA helicase ercc3 [Mycobacterium tuberculosis 02_1987]
gi|289693502|gb|EFD60931.1| DNA helicase ercc3 [Mycobacterium tuberculosis EAS054]
gi|289708499|gb|EFD72515.1| DNA helicase ercc3 [Mycobacterium tuberculosis GM 1503]
gi|289712511|gb|EFD76523.1| DNA helicase ercc3 [Mycobacterium tuberculosis T85]
gi|298494148|gb|EFI29442.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308216480|gb|EFO75879.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu001]
gi|308325182|gb|EFP14033.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu002]
gi|308331690|gb|EFP20541.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu003]
gi|308339288|gb|EFP28139.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu005]
gi|308342965|gb|EFP31816.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu006]
gi|308346849|gb|EFP35700.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu007]
gi|308350765|gb|EFP39616.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu008]
gi|308355426|gb|EFP44277.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu009]
gi|308359379|gb|EFP48230.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu010]
gi|308363287|gb|EFP52138.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu011]
gi|323720724|gb|EGB29800.1| DNA helicase ercc3 [Mycobacterium tuberculosis CDC1551A]
gi|326904919|gb|EGE51852.1| DNA helicase ercc3 [Mycobacterium tuberculosis W-148]
gi|328459855|gb|AEB05278.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|339330282|emb|CCC25942.1| putative DNA helicase ERCC3 [Mycobacterium africanum GM041182]
gi|344218688|gb|AEM99318.1| DNA helicase ErcC3 [Mycobacterium tuberculosis CTRI-2]
gi|378544122|emb|CCE36395.1| ercc3 [Mycobacterium tuberculosis UT205]
gi|392054965|gb|AFM50523.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 605]
gi|395137582|gb|AFN48741.1| DNA excision repair protein ERCC-3 [Mycobacterium tuberculosis
H37Rv]
gi|440580326|emb|CCG10729.1| putative DNA HELICASE ERCC3 [Mycobacterium tuberculosis 7199-99]
gi|444894355|emb|CCP43609.1| DNA helicase Ercc3 [Mycobacterium tuberculosis H37Rv]
Length = 542
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|385993922|ref|YP_005912220.1| DNA helicase ercc3, partial [Mycobacterium tuberculosis CCDC5079]
gi|339293876|gb|AEJ45987.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5079]
Length = 312
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|167966812|ref|ZP_02549089.1| DNA helicase ercc3 [Mycobacterium tuberculosis H37Ra]
Length = 542
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|302535925|ref|ZP_07288267.1| ATP-dependent DNA helicase [Streptomyces sp. C]
gi|302444820|gb|EFL16636.1| ATP-dependent DNA helicase [Streptomyces sp. C]
Length = 547
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEHIH Y++T L+ A + G +
Sbjct: 4 PLIVQSDKTLLLEVDHELAGAARRAIAPFAELERAPEHIHTYRITPLGLWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + YG++ L
Sbjct: 64 QVVDALVEYSRYPVPHALLVDVAETMARYGRLTL 97
>gi|455648330|gb|EMF27207.1| ATP-dependent DNA helicase [Streptomyces gancidicus BKS 13-15]
Length = 547
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ LV
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLSLV 98
Query: 162 LKH 164
KH
Sbjct: 99 -KH 100
>gi|294996341|ref|ZP_06802032.1| DNA helicase ercc3 [Mycobacterium tuberculosis 210]
gi|297633378|ref|ZP_06951158.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|308371780|ref|ZP_07426215.2| hypothetical protein TMDG_02629 [Mycobacterium tuberculosis
SUMu004]
gi|383306761|ref|YP_005359572.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB327]
gi|385990323|ref|YP_005908621.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5180]
gi|386003879|ref|YP_005922158.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB423]
gi|308335490|gb|EFP24341.1| hypothetical protein TMDG_02629 [Mycobacterium tuberculosis
SUMu004]
gi|339297516|gb|AEJ49626.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5180]
gi|379027027|dbj|BAL64760.1| DNA helicase [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|380720714|gb|AFE15823.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB327]
gi|380724367|gb|AFE12162.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB423]
Length = 549
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|308397334|ref|ZP_07492493.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu012]
gi|308366928|gb|EFP55779.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu012]
Length = 544
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 35 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 94
>gi|254393413|ref|ZP_05008555.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294814127|ref|ZP_06772770.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|326442528|ref|ZP_08217262.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|197707042|gb|EDY52854.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294326726|gb|EFG08369.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 545
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLC 151
+ A AE PEHIH Y++T L+ A + G + +++ L S+ VP ++ +
Sbjct: 29 IAAFAELERAPEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDVAET 88
Query: 152 TLSYGKVKLVLKH--NRYFIESPFAEVLQKLLKDPVIQ---DCRLRRDT----EDSQTLI 202
YG++ L KH + + + VL+++L+ IQ R+ DT + I
Sbjct: 89 MARYGRLTLS-KHPVHGLVLTTTDRPVLEEILRSKKIQPLVGTRIDADTVLVHPSERGQI 147
Query: 203 NQADKKLKAP 212
QA KL P
Sbjct: 148 KQALLKLGWP 157
>gi|289442270|ref|ZP_06432014.1| DNA helicase ercc3 [Mycobacterium tuberculosis T46]
gi|289415189|gb|EFD12429.1| DNA helicase ercc3 [Mycobacterium tuberculosis T46]
Length = 542
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|399989940|ref|YP_006570290.1| type III restriction enzyme, res subunit [Mycobacterium smegmatis
str. MC2 155]
gi|441215685|ref|ZP_20976615.1| DNA helicase Ercc3 [Mycobacterium smegmatis MKD8]
gi|399234502|gb|AFP41995.1| Type III restriction enzyme, res subunit [Mycobacterium smegmatis
str. MC2 155]
gi|440624767|gb|ELQ86626.1| DNA helicase Ercc3 [Mycobacterium smegmatis MKD8]
Length = 549
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYPVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|289749381|ref|ZP_06508759.1| DNA helicase ercc3 [Mycobacterium tuberculosis T92]
gi|289689968|gb|EFD57397.1| DNA helicase ercc3 [Mycobacterium tuberculosis T92]
Length = 531
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|365863777|ref|ZP_09403481.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
gi|364006749|gb|EHM27785.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
Length = 547
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMARYGRLTLS 98
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ +Q
Sbjct: 99 -KHPVHGLVLTSTDRPVLEEILRSKKVQ 125
>gi|291438904|ref|ZP_06578294.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
gi|291341799|gb|EFE68755.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
Length = 547
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ LV
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIADTMDRYGRLSLV 98
Query: 162 LKH 164
KH
Sbjct: 99 -KH 100
>gi|392418210|ref|YP_006454815.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617986|gb|AFM19136.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 549
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTHSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKHNRYFIE--SPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLK 210
KH + + S VL+++L++ I R +D+ + N ++K
Sbjct: 100 -KHPAHGLTLVSLDRAVLEEVLRNKKIAPMLGARIDDDTVIVHNSERGRIK 149
>gi|404421548|ref|ZP_11003263.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
gi|403658859|gb|EJZ13553.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
Length = 542
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ VP ++ I YG+++L+
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSFSRYPVPQPLLVDIVDTMARYGRLQLI 92
Query: 162 LKHNRYFIE--SPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKLK 210
KH + + S VL+++L++ I R +D+ + N ++K
Sbjct: 93 -KHPAHGLTLVSLDRAVLEEVLRNKKIAPMLGARIDDDTVIVHNSERGRVK 142
>gi|302530595|ref|ZP_07282937.1| DNA helicase [Streptomyces sp. AA4]
gi|302439490|gb|EFL11306.1| DNA helicase [Streptomyces sp. AA4]
Length = 548
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIA---EPVCRPEHIHEYKLTAYSLYAAVSVGL 123
PL V + + LE +P A D IAIA E PEH+H Y++T +L+ A + G
Sbjct: 5 PLIVQSDKTVLLEVDNP---RADDARIAIAPFAELERAPEHVHTYRITPLALWNARAAGH 61
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+ +++ L S+ VP ++ + +G++++
Sbjct: 62 DAEQVVDALTTYSRFPVPQPLLIDVVDVMGRFGRLQI 98
>gi|302560004|ref|ZP_07312346.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
gi|302477622|gb|EFL40715.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
Length = 547
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ LV
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIADTMDRYGRLSLV 98
Query: 162 LKH 164
KH
Sbjct: 99 -KH 100
>gi|443492737|ref|YP_007370884.1| DNA helicase Ercc3 [Mycobacterium liflandii 128FXT]
gi|442585234|gb|AGC64377.1| DNA helicase Ercc3 [Mycobacterium liflandii 128FXT]
Length = 549
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARATGHDAEQVVDALVTHSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|182436979|ref|YP_001824698.1| ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465495|dbj|BAG20015.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 547
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S PL V + + LE + + AE PEHIH Y++T L+ A + G +
Sbjct: 2 SGPLIVQSDKTLLLEVDHDLADACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHD 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
+++ L S+ VP ++ I YG++ L KH + + + VL+++L+
Sbjct: 62 AEQVVDALVEYSRYPVPHALLVDIAETMARYGRLTLS-KHPVHGLVLTTTDRPVLEEILR 120
Query: 183 DPVIQ 187
+Q
Sbjct: 121 SKKVQ 125
>gi|383821970|ref|ZP_09977203.1| DNA or RNA helicase of superfamily protein II [Mycobacterium phlei
RIVM601174]
gi|383332268|gb|EID10751.1| DNA or RNA helicase of superfamily protein II [Mycobacterium phlei
RIVM601174]
Length = 542
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVTYSRYAVPQPLLVDIVDTMSRYGRLQLV 92
Query: 162 LKH 164
KH
Sbjct: 93 -KH 94
>gi|302520011|ref|ZP_07272353.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
gi|302428906|gb|EFL00722.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
Length = 546
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 38 PEHIHTYRITPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMARYGRLSL- 96
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ +Q
Sbjct: 97 HKHPTHGLVLSSTDRPVLEEVLRSKRVQ 124
>gi|377562511|ref|ZP_09791902.1| putative ATP-dependent DNA helicase [Gordonia otitidis NBRC 100426]
gi|441508856|ref|ZP_20990778.1| putative ATP-dependent DNA helicase [Gordonia aichiensis NBRC
108223]
gi|377520337|dbj|GAB37067.1| putative ATP-dependent DNA helicase [Gordonia otitidis NBRC 100426]
gi|441446861|dbj|GAC48739.1| putative ATP-dependent DNA helicase [Gordonia aichiensis NBRC
108223]
Length = 555
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAAAARGAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I +G+++LV
Sbjct: 65 QVVDALVSYSRYAVPQPLLMDIVDTMGRFGRLQLV 99
>gi|378719475|ref|YP_005284364.1| putative DNA repair helicase [Gordonia polyisoprenivorans VH2]
gi|375754178|gb|AFA74998.1| putative DNA repair helicase [Gordonia polyisoprenivorans VH2]
Length = 555
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAASARAAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ +VP ++ I +G+++LV
Sbjct: 65 QVVDALVTYSRYAVPQPLLMDIVDTMGRFGRLQLV 99
>gi|333026244|ref|ZP_08454308.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
gi|332746096|gb|EGJ76537.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
Length = 546
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 38 PEHIHTYRITPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMARYGRLSL- 96
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ +Q
Sbjct: 97 HKHPTHGLVLSSTDRPVLEEVLRSKRVQ 124
>gi|318061807|ref|ZP_07980528.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
gi|318079252|ref|ZP_07986584.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actF]
Length = 546
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 38 PEHIHTYRITPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMARYGRLSL- 96
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ +Q
Sbjct: 97 HKHPTHGLVLSSTDRPVLEEVLRSKRVQ 124
>gi|403715128|ref|ZP_10940913.1| putative ATP-dependent DNA helicase [Kineosphaera limosa NBRC
100340]
gi|403210896|dbj|GAB95596.1| putative ATP-dependent DNA helicase [Kineosphaera limosa NBRC
100340]
Length = 547
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ + YG++ L
Sbjct: 40 PEHIHTYRITPLGLWNARAAGHDAEQVVDALVTHSRYPVPHALLVDVADTMDRYGRLVLE 99
Query: 162 LKHNRYFIESPFAEVLQKLLK 182
R + + VL+++L+
Sbjct: 100 KDGERLVLRTTDRPVLEEVLR 120
>gi|326777593|ref|ZP_08236858.1| helicase domain protein [Streptomyces griseus XylebKG-1]
gi|326657926|gb|EGE42772.1| helicase domain protein [Streptomyces griseus XylebKG-1]
Length = 547
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 65 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE 124
S PL V + + LE + + AE PEHIH Y++T L+ A + G +
Sbjct: 2 SGPLIVQSDKTLLLEVDHDLADACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHD 61
Query: 125 THDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLK 182
+++ L S+ VP ++ I YG++ L KH + + + VL+++L+
Sbjct: 62 AEQVVDALVEYSRYPVPHALLVDIAETMARYGRLTLS-KHPVHGLVLTTTDRPVLEEILR 120
Query: 183 DPVIQ 187
+Q
Sbjct: 121 SKKVQ 125
>gi|118616163|ref|YP_904495.1| DNA helicase Ercc3 [Mycobacterium ulcerans Agy99]
gi|118568273|gb|ABL03024.1| DNA helicase Ercc3 [Mycobacterium ulcerans Agy99]
Length = 542
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVTHSRYAVPQPLLVDIVDTMARYGRLQLV 92
Query: 162 LKH 164
KH
Sbjct: 93 -KH 94
>gi|386385428|ref|ZP_10070717.1| helicase domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
gi|385667118|gb|EIF90572.1| helicase domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
Length = 548
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ + YG++ L
Sbjct: 39 PEHIHTYRITPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDVAETMARYGRLTLS 98
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ 187
KH + + S VL+++L+ +Q
Sbjct: 99 -KHPVHGLVLTSTDRPVLEEILRSKKVQ 125
>gi|183984638|ref|YP_001852929.1| DNA helicase Ercc3 [Mycobacterium marinum M]
gi|183177964|gb|ACC43074.1| DNA helicase Ercc3 [Mycobacterium marinum M]
Length = 549
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVTHSRYAVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|407832348|gb|EKF98418.1| DNA repair helicase [Trypanosoma cruzi]
Length = 925
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
V NG +F+ + P Y H DFL + EPV R + + EY
Sbjct: 3 VGANGSLFVNNTHPAYPHLVDFLTSCCEPVSRTQRMSEY 41
>gi|345001279|ref|YP_004804133.1| helicase domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344316905|gb|AEN11593.1| helicase domain protein [Streptomyces sp. SirexAA-E]
Length = 551
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMARYGRLTLS 98
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ---DCRLRRDT 195
KH + + S VL+++L+ +Q R+ DT
Sbjct: 99 -KHPVHGLVLTSNDRPVLEEILRSKKVQPLVGARIDADT 136
>gi|295838136|ref|ZP_06825069.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
gi|295826881|gb|EFG65124.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
Length = 546
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 38 PEHIHTYRITPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMARYGRLSL- 96
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
KH + + + VL+++L+ +Q +R DS
Sbjct: 97 HKHPTHGLVLSTTDRPVLEEILRSKRVQPLVGQRIDADS 135
>gi|433633918|ref|YP_007267545.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070017]
gi|432165511|emb|CCK62989.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070017]
Length = 538
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSHSRYAVPQPLLVDIVDTMARYGRLQLV 92
>gi|329941405|ref|ZP_08290684.1| DNA helicase [Streptomyces griseoaurantiacus M045]
gi|329299936|gb|EGG43835.1| DNA helicase [Streptomyces griseoaurantiacus M045]
Length = 798
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + AE PEHIH Y++T L+ A + G +
Sbjct: 253 PLIVQSDKTLLLEVDHERADDCRRVIAPFAELERAPEHIHTYRVTPLGLWNARAAGHDAE 312
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRY--FIESPFAEVLQKLLKDP 184
+++ L S+ VP ++ I YG++ L KH + + S VL+++LK
Sbjct: 313 QVVDALVEFSRYPVPHALLVDIAETMDRYGRLTLS-KHPAHGLVLTSTDRPVLEEVLKSK 371
Query: 185 VI 186
I
Sbjct: 372 RI 373
>gi|411007738|ref|ZP_11384067.1| ATP-dependent DNA helicase [Streptomyces globisporus C-1027]
Length = 547
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + + AE PEHIH Y++T L+ A + G +
Sbjct: 4 PLIVQSDKTLLLEVDHELAEACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLKDP 184
+++ L S+ VP ++ I YG++ L KH + + + VL+++L+
Sbjct: 64 QVVDALVEYSRYPVPHALLVDIAETMARYGRLTLS-KHPVHGLVLTTTDRPVLEEILRSK 122
Query: 185 VIQ 187
+Q
Sbjct: 123 KVQ 125
>gi|357021039|ref|ZP_09083270.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
thermoresistibile ATCC 19527]
gi|356478787|gb|EHI11924.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
thermoresistibile ATCC 19527]
Length = 549
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVTYSRYAVPQPLLVDVVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|359764529|ref|ZP_09268374.1| putative ATP-dependent DNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
gi|359318081|dbj|GAB21207.1| putative ATP-dependent DNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
Length = 548
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I +G+++LV
Sbjct: 33 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTFSRYAVPQPLLMDIVDTMGRFGRLQLV 92
>gi|333989429|ref|YP_004522043.1| DNA helicase Ercc3 [Mycobacterium sp. JDM601]
gi|333485397|gb|AEF34789.1| DNA helicase Ercc3 [Mycobacterium sp. JDM601]
Length = 550
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I YG+++LV
Sbjct: 41 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSHSRYAVPQPLLVDIVDTMARYGRLQLV 100
>gi|239989681|ref|ZP_04710345.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
11379]
gi|291446696|ref|ZP_06586086.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291349643|gb|EFE76547.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 547
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + + AE PEHIH Y++T L+ A + G +
Sbjct: 4 PLIVQSDKTLLLEVDHDLAEACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHDAE 63
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLKDP 184
+++ L S+ VP ++ I YG++ L KH + + + VL+++L+
Sbjct: 64 QVVDALVEYSRYPVPHALLVDIAETMARYGRLTLS-KHPVHGLVLTTTDRPVLEEILRSK 122
Query: 185 VIQ 187
+Q
Sbjct: 123 KVQ 125
>gi|386845478|ref|YP_006263491.1| DNA excision repair protein ERCC-3 [Actinoplanes sp. SE50/110]
gi|359832982|gb|AEV81423.1| DNA excision repair protein ERCC-3 [Actinoplanes sp. SE50/110]
Length = 548
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + + AE PEH+H Y+LT L+ + + G +
Sbjct: 5 PLIVQSDKTLLLEVDHPDAQACRMAIAPFAELERSPEHVHTYRLTPLGLWNSRAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
+++ L S+ VP ++ + YG+++L+
Sbjct: 65 SVVDALITYSRYPVPHALLVDVAETMDRYGRLQLL 99
>gi|395769274|ref|ZP_10449789.1| ATP-dependent DNA helicase [Streptomyces acidiscabies 84-104]
Length = 548
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQFSRYPVPHALLVDIAETMDRYGRLTL 97
>gi|302552290|ref|ZP_07304632.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
40736]
gi|302469908|gb|EFL33001.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
40736]
Length = 547
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQFSRYPVPHALLVDIAETMDRYGRLTL 97
>gi|408826612|ref|ZP_11211502.1| ATP-dependent DNA helicase [Streptomyces somaliensis DSM 40738]
Length = 547
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L S+ VP ++ + YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEFSRYPVPHALLVDVAETMARYGRLTL 97
>gi|425734424|ref|ZP_18852743.1| DNA helicase, superfamily II [Brevibacterium casei S18]
gi|425481691|gb|EKU48850.1| DNA helicase, superfamily II [Brevibacterium casei S18]
Length = 544
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LES P+ A + A+ PE+IH Y +T L+ A + G +
Sbjct: 4 PLIVQSDRTVLLESGHPLAVEAAVAIAPFAQLARTPEYIHTYTITPLGLWNARASGHDAE 63
Query: 127 DIIEYLKRLSKTSVP-DGIVEFINLCTLSYGKVKLVLKH--NRYFIESPFAEVLQKLLKD 183
+++ L +K VP + +V+ +++ +G + L+ H + + S E+L +L+
Sbjct: 64 SVVDVLLEFAKYPVPHELLVDIVDIMD-RFGVLTLI-DHPLHGLTLTSTETELLDRLVGQ 121
Query: 184 P 184
P
Sbjct: 122 P 122
>gi|373252226|ref|ZP_09540344.1| helicase domain-containing protein [Nesterenkonia sp. F]
Length = 544
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T L+ A + G++ +I+ L S+ VP ++ + YG+++L
Sbjct: 35 PEHMHTYRITPLGLWNARAAGIDAEFVIDTLLNHSRFPVPHALLVDVAETMGRYGRLRL 93
>gi|407985074|ref|ZP_11165676.1| type III restriction enzyme, res subunit [Mycobacterium hassiacum
DSM 44199]
gi|407373345|gb|EKF22359.1| type III restriction enzyme, res subunit [Mycobacterium hassiacum
DSM 44199]
Length = 549
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDALVTYSRYPVPQPLLVDIVDTMARYGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|163839248|ref|YP_001623653.1| DNA/RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162952724|gb|ABY22239.1| DNA/RNA helicase (DEAD/DEAH box family) [Renibacterium salmoninarum
ATCC 33209]
Length = 89
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 62 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
D S PL V + + LE P A + A AE PEH+H Y+LT L+ A +
Sbjct: 3 DSASGPLIVQSDKMVLLEIDHPDATEARHAIAAFAELERAPEHVHTYRLTPLGLWNARAA 62
Query: 122 GLETHDIIEYLKRL 135
GL+ + +L ++
Sbjct: 63 GLDAEVVFRHLAQI 76
>gi|359771470|ref|ZP_09274921.1| putative ATP-dependent DNA helicase [Gordonia effusa NBRC 100432]
gi|359311357|dbj|GAB17699.1| putative ATP-dependent DNA helicase [Gordonia effusa NBRC 100432]
Length = 556
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + +G+++LV
Sbjct: 43 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTFSRYAVPQPLLMDVVDTMGRFGRLQLV 102
Query: 162 LKH 164
KH
Sbjct: 103 -KH 104
>gi|441161070|ref|ZP_20967874.1| ATP-dependent DNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440616801|gb|ELQ79926.1| ATP-dependent DNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 547
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHMHTYRVTPLGLWNARAAGHDAEQVVDALVQFSRYPVPHALLVDIAETMSRYGRLTLS 98
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ---DCRLRRDT 195
KH + + + VL+++L+ +Q RL DT
Sbjct: 99 -KHPAHGLVLTTTDRPVLEEVLRSKKVQPLVGARLDPDT 136
>gi|359425741|ref|ZP_09216835.1| putative ATP-dependent DNA helicase [Gordonia amarae NBRC 15530]
gi|358238908|dbj|GAB06417.1| putative ATP-dependent DNA helicase [Gordonia amarae NBRC 15530]
Length = 550
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 36/60 (60%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L + S+ +VP ++ + +G+++LV
Sbjct: 40 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVKYSRYAVPQPLLMDVIDTMGRFGRLQLV 99
>gi|408531108|emb|CCK29282.1| ATP-dependent DNA helicase [Streptomyces davawensis JCM 4913]
Length = 547
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ + YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQFSRYPVPHALLVDVAETMDRYGRLTL 97
>gi|296138541|ref|YP_003645784.1| type III restriction protein res subunit [Tsukamurella
paurometabola DSM 20162]
gi|296026675|gb|ADG77445.1| type III restriction protein res subunit [Tsukamurella
paurometabola DSM 20162]
Length = 556
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ VP ++ + YG+++LV
Sbjct: 40 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTFSRYPVPQPLLVDVVDTMSRYGRLQLV 99
>gi|336120274|ref|YP_004575054.1| ATP-dependent DNA helicase [Microlunatus phosphovorus NM-1]
gi|334688066|dbj|BAK37651.1| putative ATP-dependent DNA helicase [Microlunatus phosphovorus
NM-1]
Length = 548
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P + AE PEHIH Y+LT L+ A + G +
Sbjct: 8 PLVVQSDKTLLLEVDHPDADACRMAIAPFAELERAPEHIHTYRLTPLGLWNARAAGHDAE 67
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + +G+++L
Sbjct: 68 QVVDTLLTYSRYPVPSSLLVDVADTMDRFGRLRL 101
>gi|386840890|ref|YP_006245948.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101191|gb|AEY90075.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451794184|gb|AGF64233.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 550
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 42 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLTLT 101
Query: 162 LKH 164
KH
Sbjct: 102 -KH 103
>gi|403721263|ref|ZP_10944374.1| putative ATP-dependent DNA helicase [Gordonia rhizosphera NBRC
16068]
gi|403207305|dbj|GAB88705.1| putative ATP-dependent DNA helicase [Gordonia rhizosphera NBRC
16068]
Length = 557
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + +G+++LV
Sbjct: 43 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLMDVVETMSRFGRLQLV 102
Query: 162 LKH 164
KH
Sbjct: 103 -KH 104
>gi|294629996|ref|ZP_06708556.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
gi|292833329|gb|EFF91678.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
Length = 548
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLTL 97
>gi|443626543|ref|ZP_21110961.1| putative ATP-dependent DNA helicase [Streptomyces viridochromogenes
Tue57]
gi|443339950|gb|ELS54174.1| putative ATP-dependent DNA helicase [Streptomyces viridochromogenes
Tue57]
Length = 548
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLC 151
+ A AE PEHIH Y++T L+ A + G + +++ L S+ VP ++ I
Sbjct: 29 IAAFAELERAPEHIHTYRVTPLGLWNARAAGHDAEQVVDALVTYSRYPVPHALLVDIADT 88
Query: 152 TLSYGKVKL 160
YG++ L
Sbjct: 89 MDRYGRLTL 97
>gi|429193886|ref|ZP_19186022.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
gi|428670413|gb|EKX69300.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
Length = 547
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLTL 97
>gi|359420342|ref|ZP_09212280.1| putative ATP-dependent DNA helicase [Gordonia araii NBRC 100433]
gi|358243699|dbj|GAB10349.1| putative ATP-dependent DNA helicase [Gordonia araii NBRC 100433]
Length = 561
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ I +G+++LV
Sbjct: 45 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTHSRYAVPQPLLMDIVDTMARFGRLQLV 104
Query: 162 LKH 164
KH
Sbjct: 105 -KH 106
>gi|440704816|ref|ZP_20885643.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
gi|440273502|gb|ELP62235.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
Length = 554
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 43 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLTLS 102
Query: 162 LKH--NRYFIESPFAEVLQKLLKDPVIQ---DCRLRRDT 195
KH + + S VL+++L+ I RL DT
Sbjct: 103 -KHPAHGLVLTSTDRPVLEEILRSKRITPLVGARLDADT 140
>gi|300790353|ref|YP_003770644.1| DNA excision repair protein [Amycolatopsis mediterranei U32]
gi|384153882|ref|YP_005536698.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|399542231|ref|YP_006554893.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|299799867|gb|ADJ50242.1| DNA excision repair protein [Amycolatopsis mediterranei U32]
gi|340532036|gb|AEK47241.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|398323001|gb|AFO81948.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
Length = 548
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE P A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHPQAGDARVAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + +G++++
Sbjct: 65 QVVDALTTYSRFPVPQPLLIDVVDVMGRFGRLQI 98
>gi|383639665|ref|ZP_09952071.1| ATP-dependent DNA helicase [Streptomyces chartreusis NRRL 12338]
Length = 547
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLTL 97
>gi|254231169|ref|ZP_04924496.1| DNA helicase ercc3 [Mycobacterium tuberculosis C]
gi|124600228|gb|EAY59238.1| DNA helicase ercc3 [Mycobacterium tuberculosis C]
Length = 582
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ YG+++LV
Sbjct: 33 PEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDTVDTMARYGRLQLV 92
>gi|29830455|ref|NP_825089.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
gi|29607567|dbj|BAC71624.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
MA-4680]
Length = 547
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLTL 97
>gi|345854813|ref|ZP_08807609.1| DNA helicase [Streptomyces zinciresistens K42]
gi|345633718|gb|EGX55429.1| DNA helicase [Streptomyces zinciresistens K42]
Length = 546
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 92 LIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLC 151
+ A AE PEHIH Y++T L+ A + G + +++ L S+ VP ++ I
Sbjct: 28 IAAFAELERAPEHIHTYRVTPLGLWNARAAGHDAEQVVDALVTYSRYPVPHALLVDIADT 87
Query: 152 TLSYGKVKL 160
YG++ L
Sbjct: 88 MDRYGRLTL 96
>gi|238498432|ref|XP_002380451.1| origin recognition complex subunit Orc1, putative [Aspergillus
flavus NRRL3357]
gi|317155670|ref|XP_001825282.2| origin recognition complex subunit Orc1 [Aspergillus oryzae RIB40]
gi|220693725|gb|EED50070.1| origin recognition complex subunit Orc1, putative [Aspergillus
flavus NRRL3357]
Length = 798
Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 4 KRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 63
K KK++ D+ YVD + D+D PV +K + A P+ R + + P H
Sbjct: 256 KAKKRKQGDDDYVDTKDKE-DDDFQPVTPRKKQKLATNATPQSR------RQKALTTPTH 308
Query: 64 K----SRPLWVAPNGHIFLES--FSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
K +PL P G L F+ YR A L P P E+ L A
Sbjct: 309 KRIVVKKPLEFTPLGTRILSPSHFASPYRQARTLLHVSTVPTSLPCRKAEFDTVYNHLSA 368
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLS 154
A+ G T I KT+ +V +N L+
Sbjct: 369 AIMEGTGTCIYISGTPGTGKTATVREVVAQLNAAVLA 405
>gi|391865451|gb|EIT74735.1| origin recognition complex, subunit 1 [Aspergillus oryzae 3.042]
Length = 922
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 4 KRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 63
K KK++ D+ YVD + D+D PV +K + A P+ R + + P H
Sbjct: 380 KAKKRKQGDDDYVDTKDKE-DDDFQPVTPRKKQKLATNATPQSR------RQKALTTPTH 432
Query: 64 K----SRPLWVAPNGHIFLES--FSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
K +PL P G L F+ YR A L P P E+ L A
Sbjct: 433 KRIVVKKPLEFTPLGTRILSPSHFASPYRQARTLLHVSTVPTSLPCRKAEFDTVYNHLSA 492
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLS 154
A+ G T I KT+ +V +N L+
Sbjct: 493 AIMEGTGTCIYISGTPGTGKTATVREVVAQLNAAVLA 529
>gi|404213708|ref|YP_006667902.1| DNA or RNA helicases of superfamily II [Gordonia sp. KTR9]
gi|403644507|gb|AFR47747.1| DNA or RNA helicases of superfamily II [Gordonia sp. KTR9]
Length = 556
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + +G+++LV
Sbjct: 40 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|377569071|ref|ZP_09798246.1| putative ATP-dependent DNA helicase [Gordonia terrae NBRC 100016]
gi|377533978|dbj|GAB43411.1| putative ATP-dependent DNA helicase [Gordonia terrae NBRC 100016]
Length = 559
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + +G+++LV
Sbjct: 43 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLV 102
Query: 162 LKH 164
KH
Sbjct: 103 -KH 104
>gi|15828157|ref|NP_302420.1| DNA helicase [Mycobacterium leprae TN]
gi|221230634|ref|YP_002504050.1| DNA helicase [Mycobacterium leprae Br4923]
gi|13093711|emb|CAC31112.1| probable DNA helicase [Mycobacterium leprae]
gi|219933741|emb|CAR72254.1| probable DNA helicase [Mycobacterium leprae Br4923]
Length = 549
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L ++ +VP ++ I YG+++LV
Sbjct: 40 PEHVHTYRITPLALWNARAAGHDAEQVVDTLISHARYAVPQPLLVDIVDTMARYGRLQLV 99
>gi|262201196|ref|YP_003272404.1| helicase [Gordonia bronchialis DSM 43247]
gi|262084543|gb|ACY20511.1| helicase domain protein [Gordonia bronchialis DSM 43247]
Length = 555
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + +G+++LV
Sbjct: 40 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLV 99
Query: 162 LKH 164
KH
Sbjct: 100 -KH 101
>gi|441515360|ref|ZP_20997162.1| putative ATP-dependent DNA helicase [Gordonia amicalis NBRC 100051]
gi|441449827|dbj|GAC55123.1| putative ATP-dependent DNA helicase [Gordonia amicalis NBRC 100051]
Length = 559
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEH+H Y++T +L+ A + G + +++ L S+ +VP ++ + +G+++LV
Sbjct: 43 PEHVHTYRVTPLALWNARAAGHDAEQVVDALVTYSRYAVPQPLLMDVVDTMGRFGRLQLV 102
Query: 162 LKH 164
KH
Sbjct: 103 -KH 104
>gi|406575906|ref|ZP_11051590.1| helicase [Janibacter hoylei PVAS-1]
gi|404554681|gb|EKA60199.1| helicase [Janibacter hoylei PVAS-1]
Length = 545
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLV 161
PEHIH Y++T L+ A + G + +++ L S+ VP ++ + YG++ L
Sbjct: 41 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALITHSRYPVPQALLVDVAETMDRYGRLVLD 100
Query: 162 LKHNRYFIESPFAEVLQKLLK 182
++ + + VL ++L+
Sbjct: 101 KDGDQLVLRTTDRAVLTEVLR 121
>gi|421858961|ref|ZP_16291210.1| hypothetical protein PPOP_0998 [Paenibacillus popilliae ATCC 14706]
gi|410831480|dbj|GAC41647.1| hypothetical protein PPOP_0998 [Paenibacillus popilliae ATCC 14706]
Length = 659
Score = 37.4 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 68 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
++ P+ I L + +P Y L AIA+ + R + + Y+LT S V G
Sbjct: 353 FFIQPDFEILLPAAAPYYLRWE--LEAIADYI-RTDQMDVYRLTKASFEQGVEHGRTRES 409
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
++ +++ + + VP+ I + + L +L YG+V+
Sbjct: 410 VLHFMEAHAWSGVPENIQDAMELWSLQYGRVRF 442
>gi|260904266|ref|ZP_05912588.1| type III restriction protein res subunit [Brevibacterium linens
BL2]
Length = 544
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LES P+ A + A+ PE+IH Y +T L+ A + G +
Sbjct: 4 PLIVQSDRTVLLESGHPLAVEAAVAIAPFAQLSRTPEYIHTYTITPLGLWNARASGHDAE 63
Query: 127 DIIEYLKRLSKTSVP-DGIVEFINLCTLSYGKVKLV 161
+++ L +K VP + +V+ +++ +G + LV
Sbjct: 64 SVVDVLLEFAKYPVPHELLVDIVDIMD-RFGVLTLV 98
>gi|456385575|gb|EMF51143.1| DNA helicase [Streptomyces bottropensis ATCC 25435]
Length = 547
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ + YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDVAETMDRYGRLTL 97
>gi|297200523|ref|ZP_06917920.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
gi|197709647|gb|EDY53681.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
Length = 547
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ + YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDVAETMDRYGRLTL 97
>gi|71650415|ref|XP_813906.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi strain CL Brener]
gi|70878833|gb|EAN92055.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma cruzi]
Length = 925
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
V NG +F+ + P Y H DFL + EPV R + EY
Sbjct: 3 VGANGSLFVNNTHPAYPHLVDFLTSCCEPVSRTLRMSEY 41
>gi|289770106|ref|ZP_06529484.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
gi|289700305|gb|EFD67734.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
Length = 548
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 42 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMDRYGRLTL 100
>gi|418475464|ref|ZP_13044861.1| ATP-dependent DNA helicase [Streptomyces coelicoflavus ZG0656]
gi|371543924|gb|EHN72687.1| ATP-dependent DNA helicase [Streptomyces coelicoflavus ZG0656]
Length = 548
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L S+ VP ++ I YG++ L
Sbjct: 39 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDIAETMDRYGRLTL 97
>gi|354614087|ref|ZP_09031975.1| helicase domain-containing protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353221569|gb|EHB85919.1| helicase domain-containing protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 548
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHDRAEDARTAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ I +G+++L
Sbjct: 65 QVVDALTTYSRFPVPQPLLIDIVDTMGRFGRLQL 98
>gi|71417712|ref|XP_810636.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi strain CL Brener]
gi|70875197|gb|EAN88785.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma cruzi]
Length = 925
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 70 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
V NG +F+ + P Y H DFL + EPV R + EY
Sbjct: 3 VGANGSLFVNNTHPAYPHLVDFLTSCCEPVSRTLRMSEY 41
>gi|290959478|ref|YP_003490660.1| DNA helicase [Streptomyces scabiei 87.22]
gi|260649004|emb|CBG72118.1| putative DNA helicase [Streptomyces scabiei 87.22]
Length = 546
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEHIH Y++T L+ A + G + +++ L + S+ VP ++ + YG++ L
Sbjct: 38 PEHIHTYRVTPLGLWNARAAGHDAEQVVDALVQYSRYPVPHALLVDVAETMDRYGRLTL 96
>gi|452949117|gb|EME54588.1| DNA excision repair protein [Amycolatopsis decaplanina DSM 44594]
Length = 548
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIA---EPVCRPEHIHEYKLTAYSLYAAVSVGL 123
PL V + + LE + A D IAIA E PEH+H Y++T +L+ A + G
Sbjct: 5 PLIVQSDKTVLLEVDNS---QADDARIAIAPFAELERAPEHVHTYRITPLALWNARAAGH 61
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+ +++ L S+ VP ++ I +G++++
Sbjct: 62 DAEQVVDALTTYSRFPVPQPLLIDIVDTMGRFGRLQI 98
>gi|377574780|ref|ZP_09803795.1| putative ATP-dependent DNA helicase [Mobilicoccus pelagius NBRC
104925]
gi|377536485|dbj|GAB48960.1| putative ATP-dependent DNA helicase [Mobilicoccus pelagius NBRC
104925]
Length = 543
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 102 PEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
PEH+H Y++T L+ A + G + +++ L S+ VP ++ + YG++ L
Sbjct: 39 PEHVHTYRITPLGLWNARAAGFDAEQVVDALVTHSRYPVPHALLVDVADTMDRYGRLAL 97
>gi|451335877|ref|ZP_21906442.1| DNA repair helicase [Amycolatopsis azurea DSM 43854]
gi|449421769|gb|EMD27176.1| DNA repair helicase [Amycolatopsis azurea DSM 43854]
Length = 548
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIA---EPVCRPEHIHEYKLTAYSLYAAVSVGL 123
PL V + + LE + A D IAIA E PEH+H Y++T +L+ A + G
Sbjct: 5 PLIVQSDKTVLLEVDNS---QADDARIAIAPFAELERAPEHVHTYRITPLALWNARAAGH 61
Query: 124 ETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+ +++ L S+ VP ++ I +G++++
Sbjct: 62 DAEQVVDALTTYSRFPVPQPLLIDIVDTMGRFGRLQI 98
>gi|383830141|ref|ZP_09985230.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383462794|gb|EID54884.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 548
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHGLAEDARIAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + +G++++
Sbjct: 65 QVVDALTTYSRFPVPQPLLIDVVDTMGRFGRLQI 98
>gi|384567607|ref|ZP_10014711.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384523461|gb|EIF00657.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 548
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHDLAEDARIAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHN 165
+++ L S+ VP ++ + +G++++ HN
Sbjct: 65 QVVDALTTYSRFPVPQPLLIDVVDTMGRFGRLQI---HN 100
>gi|402815942|ref|ZP_10865534.1| hypothetical protein PAV_4c06180 [Paenibacillus alvei DSM 29]
gi|402506982|gb|EJW17505.1| hypothetical protein PAV_4c06180 [Paenibacillus alvei DSM 29]
Length = 659
Score = 36.2 bits (82), Expect = 8.8, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 62 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSV 121
D + R L+V P+ I + P F + + + + + Y+LT S +
Sbjct: 353 DEQERVLFVQPDFEIMV---PPHASFLIRFELEVFAQLWNSDQMDTYRLTRESFENGLEH 409
Query: 122 GLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
G ++ +L+R S T VPD + + I + YG+++
Sbjct: 410 GRSVQSVLSFLERCSLTGVPDPVRDAIEMWGRQYGRIQF 448
>gi|375102737|ref|ZP_09749000.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374663469|gb|EHR63347.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 548
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 67 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETH 126
PL V + + LE + A + AE PEH+H Y++T +L+ A + G +
Sbjct: 5 PLIVQSDKTVLLEVDHDLAEDARIAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAE 64
Query: 127 DIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKL 160
+++ L S+ VP ++ + +G++++
Sbjct: 65 QVVDALTTYSRFPVPQPLLIDVVDTMGRFGRLQI 98
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,707,606,652
Number of Sequences: 23463169
Number of extensions: 158860160
Number of successful extensions: 408979
Number of sequences better than 100.0: 893
Number of HSP's better than 100.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 407834
Number of HSP's gapped (non-prelim): 949
length of query: 219
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 82
effective length of database: 9,144,741,214
effective search space: 749868779548
effective search space used: 749868779548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)