BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11631
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Drosophila melanogaster
GN=hay PE=1 SV=2
Length = 798
Score = 306 bits (784), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 168/198 (84%), Gaps = 6/198 (3%)
Query: 6 KKKEVEDESYV-----DDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 60
KK+ EDE++ +D + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 61 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS 120
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVS
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 121 VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL 180
VGL+THDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKL
Sbjct: 139 VGLQTHDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKL 198
Query: 181 LKDPVIQDCRL-RRDTED 197
LKDPVIQ CRL R + ED
Sbjct: 199 LKDPVIQKCRLIRSEGED 216
>sp|Q7ZVV1|ERCC3_DANRE TFIIH basal transcription factor complex helicase XPB subunit
OS=Danio rerio GN=ercc3 PE=2 SV=1
Length = 782
Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 126/181 (69%), Positives = 152/181 (83%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D+++ DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 33 QEAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPLWVAPDGHIFLEAFSPV 90
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AI+EPVCRP H HEYKLTAYSLYAAVSVGL+T DIIEYL++LSKTSVPDGI
Sbjct: 91 YKYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQTSDIIEYLQKLSKTSVPDGI 150
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
V+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI+DCRLR + LI +
Sbjct: 151 VQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDTVIRDCRLRSAEGEETELITE 210
Query: 205 A 205
Sbjct: 211 T 211
>sp|Q4G005|ERCC3_RAT TFIIH basal transcription factor complex helicase XPB subunit
OS=Rattus norvegicus GN=Ercc3 PE=2 SV=1
Length = 782
Score = 267 bits (682), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 152/187 (81%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>sp|P49135|ERCC3_MOUSE TFIIH basal transcription factor complex helicase XPB subunit
OS=Mus musculus GN=Ercc3 PE=2 SV=1
Length = 783
Score = 267 bits (682), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 152/187 (81%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG ++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNAEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>sp|Q60HG1|ERCC3_MACFA TFIIH basal transcription factor complex helicase XPB subunit
OS=Macaca fascicularis GN=ERCC3 PE=2 SV=1
Length = 782
Score = 265 bits (678), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>sp|P19447|ERCC3_HUMAN TFIIH basal transcription factor complex helicase XPB subunit
OS=Homo sapiens GN=ERCC3 PE=1 SV=1
Length = 782
Score = 265 bits (676), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>sp|Q1RMT1|ERCC3_BOVIN TFIIH basal transcription factor complex helicase XPB subunit
OS=Bos taurus GN=ERCC3 PE=2 SV=1
Length = 782
Score = 263 bits (673), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG E VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFL
Sbjct: 30 PGNDTQE-AVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFL 86
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI +YL++LSKT
Sbjct: 87 EAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITDYLRKLSKT 146
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++
Sbjct: 147 GVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEA 206
Query: 199 QTLINQA 205
LI +
Sbjct: 207 TELITET 213
>sp|Q5RA62|ERCC3_PONAB TFIIH basal transcription factor complex helicase XPB subunit
OS=Pongo abelii GN=ERCC3 PE=2 SV=1
Length = 782
Score = 262 bits (670), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 122/181 (67%), Positives = 148/181 (81%), Gaps = 2/181 (1%)
Query: 25 EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 84
++ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPV
Sbjct: 35 QEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPV 92
Query: 85 YRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGI 144
Y++A DFL+AIAE VCRP H+HEYKLTAYSLYAAVSVGL+T DI EYL++LSKT VPDGI
Sbjct: 93 YKYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGI 152
Query: 145 VEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++CRLR ++ LI +
Sbjct: 153 MQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRECRLRNSEGEATELITE 212
Query: 205 A 205
Sbjct: 213 T 213
>sp|Q5ZKK7|ERCC3_CHICK TFIIH basal transcription factor complex helicase XPB subunit
OS=Gallus gallus GN=ERCC3 PE=2 SV=1
Length = 788
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 3/187 (1%)
Query: 19 PGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 78
PG+ ++ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPLWVAP+GHIFL
Sbjct: 27 PGKE-SQEAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFL 83
Query: 79 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKT 138
E+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI EYL++LSKT
Sbjct: 84 EAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKT 143
Query: 139 SVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
VP+GI++FI LCT+SYGKVKLVLK NRYF+ES +V+Q+LL+D VI+DCRLR +
Sbjct: 144 GVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPDVIQQLLQDHVIKDCRLRNAEGEE 203
Query: 199 QTLINQA 205
LI +
Sbjct: 204 TELITET 210
>sp|O00835|ERCC3_DICDI TFIIH basal transcription factor complex helicase repB subunit
OS=Dictyostelium discoideum GN=repB PE=2 SV=1
Length = 800
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/181 (54%), Positives = 129/181 (71%), Gaps = 3/181 (1%)
Query: 21 EPLDEDG-VPVAAKKNVEKDDAAV--PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIF 77
E L+E G + KK A + E++ DY + +LK D+KSRP+WV P+GHIF
Sbjct: 31 EDLEESGEFNQSIKKTTNTSSATLTSSEEKGSLLDYSKRCILKQDNKSRPIWVCPDGHIF 90
Query: 78 LESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSK 137
LE+FS +Y+ A DFL+AIAEPVCRP++IHEY+LT YSLYAAVSVGLET+DII L RLSK
Sbjct: 91 LETFSAIYKQASDFLVAIAEPVCRPQNIHEYQLTPYSLYAAVSVGLETNDIITVLGRLSK 150
Query: 138 TSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTED 197
++P + +F+ CT SYGKVKLVL+ N+YF+ES + EVL+ LLKD I R++ E+
Sbjct: 151 LALPKEVEQFVRQCTQSYGKVKLVLQKNKYFVESAYPEVLEFLLKDSSIATARIKPTLEE 210
Query: 198 S 198
S
Sbjct: 211 S 211
>sp|Q38861|XPB1_ARATH DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3
Length = 767
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 44 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 102
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY LT +SLYAAVSVGLET II L +LSKT +P ++EFI+ T +YGKVKLVLK
Sbjct: 103 MHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKK 162
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRL 191
NRYFIESPF EVL++LL D VI R
Sbjct: 163 NRYFIESPFPEVLKRLLSDDVINRARF 189
>sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1
Length = 766
Score = 190 bits (483), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 105/133 (78%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HEY LT +SLYAA
Sbjct: 57 LKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 116
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
VSVGLET II L +LSKT +P I++FI+ T +YGKVKLVLK NRYFIESPF EVL+
Sbjct: 117 VSVGLETETIISVLNKLSKTKLPGEIIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLK 176
Query: 179 KLLKDPVIQDCRL 191
+LL D VI R
Sbjct: 177 RLLSDDVINRARF 189
>sp|O13768|ERCC3_SCHPO Probable DNA repair helicase ercc3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ercc3 PE=1 SV=1
Length = 804
Score = 184 bits (468), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E +D+SY P ++ + N + + FG D+ + LK DH +RPL
Sbjct: 32 EEDDDSYKPAPRIRINNNKTKAQTTTNSNEARQSGISAMFGQNDFSNLLGLKLDHTARPL 91
Query: 69 WVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
W+ P +G I LE+FSP+ A DFL+ I+EPV RP IHEY++TAYSLYAAVSVGL+T D
Sbjct: 92 WINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIHEYRITAYSLYAAVSVGLKTED 151
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQ 187
II L RLSKT +P IV+FI CT+SYGKVKLVLK NRYFIES A VL+ LL+DPVI
Sbjct: 152 IIAVLDRLSKTPIPPSIVDFIRACTVSYGKVKLVLKKNRYFIESGDASVLRLLLRDPVIG 211
Query: 188 DCRL 191
R+
Sbjct: 212 PLRI 215
>sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SSL2 PE=1 SV=1
Length = 843
Score = 183 bits (465), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 59 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYA 117
L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIHEYK+TAYSLYA
Sbjct: 123 LRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHEYKITAYSLYA 182
Query: 118 AVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVL 177
AVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNRYF+E+ A++L
Sbjct: 183 AVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNRYFVETTQADIL 242
Query: 178 QKLLKDPVIQDCRLRRD 194
Q LL D VI R+ D
Sbjct: 243 QMLLNDSVIGPLRIDSD 259
>sp|Q8SSK1|RAD25_ENCCU Probable DNA repair helicase RAD25 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RAD25 PE=3 SV=1
Length = 696
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 92/133 (69%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
++VLK D +S P+WV +G I LE+F R A DFLIAIAEP+ RP IHE+++TAYSL
Sbjct: 43 ELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLQIHEFQITAYSL 102
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DIIE L R SK +P + FI CTLSYGKVKLV+K + +F+E+
Sbjct: 103 YAAVSVGLTTSDIIETLDRFSKNFLPRSVRVFITECTLSYGKVKLVMKESSFFLETANES 162
Query: 176 VLQKLLKDPVIQD 188
V + L D VI+
Sbjct: 163 VYKMLSSDAVIRS 175
>sp|C4V922|RAD25_NOSCE Probable DNA repair helicase RAD25 homolog OS=Nosema ceranae
(strain BRL01) GN=RAD25 PE=3 SV=1
Length = 659
Score = 144 bits (363), Expect = 5e-34, Method: Composition-based stats.
Identities = 69/132 (52%), Positives = 96/132 (72%)
Query: 56 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSL 115
+++LK DH++ LW+ + I LE+F + A DFLIAIAEPV RP++IHEY++TAYSL
Sbjct: 19 EIILKDDHENFSLWINYDALIILETFKQNSKQASDFLIAIAEPVSRPKYIHEYQITAYSL 78
Query: 116 YAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAE 175
YAAVSVGL T DI+ L SK +P + FI CTLSYGK+KLV++ N+YFIE+ +
Sbjct: 79 YAAVSVGLSTDDILSTLSYFSKNIMPRSVKNFIVECTLSYGKIKLVIQFNKYFIEAANND 138
Query: 176 VLQKLLKDPVIQ 187
+L+KL+ D +I+
Sbjct: 139 ILKKLIDDKIIR 150
>sp|Q6E6J3|RAD25_ANTLO Probable DNA repair helicase RAD25 homolog OS=Antonospora locustae
GN=RAD25 PE=3 SV=1
Length = 687
Score = 142 bits (358), Expect = 2e-33, Method: Composition-based stats.
Identities = 74/154 (48%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 104
+ EF ++ R +K +H PL V+ NG I LE+F+ + A DFLIAIAEPV RP H
Sbjct: 27 QHEFEPEEIR----MKQEHTECPLLVSHNGIIILETFTANAKQATDFLIAIAEPVSRPAH 82
Query: 105 IHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKH 164
+HEY++T YSLYAAVSVGL T DI+ L R +K +VPD IV F+ CTLSYGK +LV K
Sbjct: 83 VHEYRITPYSLYAAVSVGLTTEDILSTLDRFAKNTVPDTIVRFVRECTLSYGKTRLVFKG 142
Query: 165 NRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDS 198
R+ +E+ EV L D I R D+
Sbjct: 143 GRFLVEAATREVFDVLTGDAEISRLRAAGTVRDA 176
>sp|A9CRJ7|RAD25_ENTBH Probable DNA repair helicase RAD25 homolog OS=Enterocytozoon
bieneusi (strain H348) GN=RAD25 PE=3 SV=1
Length = 609
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 91/149 (61%)
Query: 59 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAA 118
+K + + PLW+ +G I LE F + A +FLIAIAEP+ RPE+IHEY++T YSL+AA
Sbjct: 1 MKENSEDCPLWINYDGLIILEMFRENSQQATNFLIAIAEPISRPENIHEYQITPYSLFAA 60
Query: 119 VSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQ 178
SVGL T I L++ SK +P + I+ CTLSYGK+KLV + ++FIE ++
Sbjct: 61 ASVGLTTDQITNTLQKFSKNIIPRNVKNLISDCTLSYGKLKLVRQSQKFFIEVYNDKIFN 120
Query: 179 KLLKDPVIQDCRLRRDTEDSQTLINQADK 207
+ D +++ + + ++ + I +K
Sbjct: 121 FITSDEILKSFIVNSNIDELKIEITNVEK 149
>sp|A8Y9G2|RPOC2_LOLPR DNA-directed RNA polymerase subunit beta'' OS=Lolium perenne
GN=rpoC2 PE=3 SV=1
Length = 1466
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 3 YKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYR 54
Y+ ++ E E E+ D+ G P +E G P + +EKD EDE+G+ + +
Sbjct: 634 YRTREDEYEYETLEDEYGSPENEYGNPENEYRTLEKDS----EDEYGSPESK 681
>sp|Q82TV8|HTPG_NITEU Chaperone protein HtpG OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=htpG PE=3 SV=1
Length = 640
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 28 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 87
+P+ KK V D++ K YR + +++ +W P I E + Y+H
Sbjct: 209 LPIVMKKEVWDDES---------KSYRLSDEDETINQASAIWARPKNEITQEQYDEFYKH 259
Query: 88 -AHDFLIAIAEPVCRPEHIHEY 108
AHDF +A R E EY
Sbjct: 260 VAHDFEPPLAHVHARVEGKQEY 281
>sp|G2TRU7|WTF15_SCHPO Uncharacterized protein wtf15 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=wtf15 PE=3 SV=1
Length = 255
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Query: 12 DESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK---SRPL 68
DE G +D +G P + + EK D + + +Q PDH +
Sbjct: 13 DEEMGLKAGHEIDLEGSPPSEHNSEEKSTLPSNSDILTSANPVSQASETPDHSIESNTGS 72
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
+P H L FS + F I + V EH H + + ++ +SV L + I
Sbjct: 73 TQSPTSHSLLLKFSFCIVYYSYFAIVVLGCVLPFEHTHTFLIAFLVIFGIISVILFSGSI 132
Query: 129 IEY 131
Y
Sbjct: 133 YYY 135
>sp|O05131|PBPA_NEIGO Penicillin-binding protein 1A OS=Neisseria gonorrhoeae GN=mrcA PE=1
SV=3
Length = 798
Score = 31.2 bits (69), Expect = 6.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 13 ESYVDDPGEPLDEDGV-PVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 58
E V DPG LD G+ P +++ E D+AAV ++ G D Q V
Sbjct: 731 ERMVTDPGLMLDNSGIAPQPSRRAKEDDEAAVENEQQGRSDETRQDV 777
>sp|Q5FAC7|PBPA_NEIG1 Penicillin-binding protein 1A OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=mrcA PE=3 SV=3
Length = 798
Score = 31.2 bits (69), Expect = 6.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 13 ESYVDDPGEPLDEDGV-PVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 58
E V DPG LD G+ P +++ E D+AAV ++ G D Q V
Sbjct: 731 ERMVTDPGLMLDNSGIAPQPSRRAKEDDEAAVENEQQGRSDETRQDV 777
>sp|Q68FK4|ARMC8_XENLA Armadillo repeat-containing protein 8 OS=Xenopus laevis GN=armc8
PE=2 SV=1
Length = 720
Score = 30.8 bits (68), Expect = 8.4, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 83 PVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLE---------THDIIEYLK 133
PV + HD L+ E +H HE + A+ LYA++ E H + +
Sbjct: 379 PVSQIQHDCLLTSEELDHDLKHAHELRQAAFKLYASLGANDEDIRKKIIEAEHMMDRIVN 438
Query: 134 RLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVI 186
LS+TSV + L +LS +L + + P +VLQ D ++
Sbjct: 439 GLSETSVKVRLAAVRCLHSLSRSVQQLRTSFQDHAVWKPLMKVLQNAPDDILV 491
>sp|Q3SJW8|HTPG_THIDA Chaperone protein HtpG OS=Thiobacillus denitrificans (strain ATCC
25259) GN=htpG PE=3 SV=1
Length = 633
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 28 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 87
+P+ KK KD P DE + +K+ LW P I + ++ Y+H
Sbjct: 209 LPIVMKKTEWKDGVETPTDED-----------ETVNKASALWARPKKDISDDEYNEFYKH 257
Query: 88 -AHDFLIAIAEPVCRPEHIHEY 108
AHDF +A R E EY
Sbjct: 258 VAHDFEPPLAWSHNRVEGKQEY 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,211,907
Number of Sequences: 539616
Number of extensions: 3866521
Number of successful extensions: 10554
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10504
Number of HSP's gapped (non-prelim): 60
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)