Your job contains 1 sequence.
>psy11631
KKYKRKKKEVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK
PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVS
VGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKL
LKDPVIQDCRLRRDTEDSQTLINQADKKLKAPQFGLYSA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11631
(219 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0001179 - symbol:hay "haywire" species:7227 "Droso... 761 1.7e-75 1
ZFIN|ZDB-GENE-030131-3043 - symbol:ercc3 "excision repair... 680 6.5e-67 1
RGD|1307139 - symbol:Ercc3 "excision repair cross-complem... 677 1.3e-66 1
UNIPROTKB|E2RN68 - symbol:ERCC3 "Uncharacterized protein"... 676 1.7e-66 1
MGI|MGI:95414 - symbol:Ercc3 "excision repair cross-compl... 676 1.7e-66 1
UNIPROTKB|Q60HG1 - symbol:ERCC3 "TFIIH basal transcriptio... 673 3.6e-66 1
UNIPROTKB|F1RXZ5 - symbol:ERCC3 "Uncharacterized protein"... 672 4.5e-66 1
UNIPROTKB|P19447 - symbol:ERCC3 "TFIIH basal transcriptio... 671 5.8e-66 1
UNIPROTKB|Q1RMT1 - symbol:ERCC3 "TFIIH basal transcriptio... 668 1.2e-65 1
UNIPROTKB|Q5RA62 - symbol:ERCC3 "TFIIH basal transcriptio... 665 2.5e-65 1
UNIPROTKB|F1NDN0 - symbol:ERCC3 "TFIIH basal transcriptio... 656 2.3e-64 1
UNIPROTKB|F1NZ23 - symbol:ERCC3 "TFIIH basal transcriptio... 656 2.3e-64 1
UNIPROTKB|Q5ZKK7 - symbol:ERCC3 "TFIIH basal transcriptio... 656 2.3e-64 1
WB|WBGene00013441 - symbol:Y66D12A.15 species:6239 "Caeno... 632 7.9e-62 1
UNIPROTKB|G3V1S1 - symbol:ERCC3 "Excision repair cross-co... 584 9.6e-57 1
DICTYBASE|DDB_G0278729 - symbol:repB "transcription facto... 494 1.3e-46 1
CGD|CAL0005155 - symbol:orf19.2857 species:5476 "Candida ... 480 5.8e-45 1
TAIR|locus:2177901 - symbol:XPB1 "homolog of xeroderma pi... 473 2.1e-44 1
TAIR|locus:2177891 - symbol:XPB2 "homolog of Xeroderma pi... 471 3.5e-44 1
POMBASE|SPAC17A5.06 - symbol:ptr8 "transcription factor T... 462 4.3e-43 1
SGD|S000001405 - symbol:SSL2 "Component of RNA polymerase... 453 5.0e-42 1
ASPGD|ASPL0000009371 - symbol:AN8201 species:162425 "Emer... 411 1.6e-37 1
GENEDB_PFALCIPARUM|PF10_0369 - symbol:PF10_0369 "helicase... 339 1.1e-29 1
UNIPROTKB|Q8IJ31 - symbol:PF10_0369 "DNA repair helicase ... 339 1.1e-29 1
>FB|FBgn0001179 [details] [associations]
symbol:hay "haywire" species:7227 "Drosophila melanogaster"
[GO:0008344 "adult locomotory behavior" evidence=IMP] [GO:0004386
"helicase activity" evidence=ISS] [GO:0009411 "response to UV"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=ISS] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS;IDA] [GO:0001111
"promoter clearance from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC;NAS;IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009411 EMBL:AE014296 GO:GO:0003677 GO:GO:0008344
GO:GO:0004003 GO:GO:0004386 GO:GO:0006367 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0005675
GO:GO:0000381 eggNOG:COG1061 GeneTree:ENSGT00390000002204 KO:K10843
TIGRFAMs:TIGR00603 EMBL:S50517 EMBL:X68309 EMBL:L02965
EMBL:AY051975 EMBL:BT025199 PIR:A44223 RefSeq:NP_001137931.1
RefSeq:NP_524020.2 UniGene:Dm.5750 ProteinModelPortal:Q02870
SMR:Q02870 IntAct:Q02870 STRING:Q02870 PaxDb:Q02870 PRIDE:Q02870
EnsemblMetazoa:FBtr0076253 EnsemblMetazoa:FBtr0114599 GeneID:39202
KEGG:dme:Dmel_CG8019 UCSC:CG8019-RA CTD:39202 FlyBase:FBgn0001179
InParanoid:Q02870 OMA:SKINVIC OrthoDB:EOG4KKWHX PhylomeDB:Q02870
GenomeRNAi:39202 NextBio:812457 Bgee:Q02870 GermOnline:CG8019
Uniprot:Q02870
Length = 798
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 148/210 (70%), Positives = 170/210 (80%)
Query: 11 EDESYVD--DPGEPLD---EDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 65
EDE++ D + LD +G+P AA KN E +D + DE+GAKDYR+QM L+PDH +
Sbjct: 24 EDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGN 83
Query: 66 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLET 125
RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHEYKLTAYSLYAAVSVGL+T
Sbjct: 84 RPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQT 143
Query: 126 HDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPV 185
HDI+EYLKRLSKTS+P+GI+EFI LCTLSYGKVKLVLKHN+YFIESP EVLQKLLKDPV
Sbjct: 144 HDIVEYLKRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKLLKDPV 203
Query: 186 IQDCRLRRDTEDSQTLINQADKKLKAPQFG 215
IQ CRL R +E + D K QFG
Sbjct: 204 IQKCRLIR-SEGEDFIQGTLDGKA-ITQFG 231
>ZFIN|ZDB-GENE-030131-3043 [details] [associations]
symbol:ercc3 "excision repair cross-complementing
rodent repair deficiency, complementation group 3" species:7955
"Danio rerio" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005506 "iron ion
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016705 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen"
evidence=IEA] [GO:0020037 "heme binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0043138 "3'-5' DNA helicase
activity" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001128 InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR017972
Pfam:PF00067 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS00086 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3043 GO:GO:0005524 GO:GO:0005506 GO:GO:0009055
GO:GO:0003677 GO:GO:0020037 Gene3D:1.10.630.10 SUPFAM:SSF48264
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0016705 GeneTree:ENSGT00390000002204
TIGRFAMs:TIGR00603 EMBL:BX927387 IPI:IPI00994241
Ensembl:ENSDART00000124565 ArrayExpress:E7FFE5 Bgee:E7FFE5
Uniprot:E7FFE5
Length = 843
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 132/196 (67%), Positives = 159/196 (81%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E EDE + GE ++ VP AA K V D+++ DE+GAKDYR QM+LK DH SRPL
Sbjct: 21 EEEDEEVIG--GE--SQEAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPL 74
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AI+EPVCRP H HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 75 WVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQTSDI 134
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
IEYL++LSKTSVPDGIV+FI LCT+SYGKVKLVLKHNRYF+ES F +V+Q+LL+D VI+D
Sbjct: 135 IEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFPDVIQRLLQDTVIRD 194
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR + LI +
Sbjct: 195 CRLRSAEGEETELITE 210
>RGD|1307139 [details] [associations]
symbol:Ercc3 "excision repair cross-complementing rodent repair
deficiency, complementation group 3" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0000441
"SSL2-core TFIIH complex" evidence=IDA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding"
evidence=IEA;ISO] [GO:0001666 "response to hypoxia" evidence=IEP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IDA] [GO:0004672 "protein kinase
activity" evidence=ISO;ISS] [GO:0005524 "ATP binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IDA] [GO:0005675 "holo TFIIH
complex" evidence=ISO;ISS] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0006917 "induction of apoptosis"
evidence=IEA;ISO] [GO:0006979 "response to oxidative stress"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008104 "protein localization"
evidence=IEA;ISO] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISO;ISS;IDA] [GO:0009411 "response
to UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
[GO:0016887 "ATPase activity" evidence=ISO;IDA] [GO:0032564 "dATP
binding" evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IEA;ISO] [GO:0035315 "hair cell differentiation"
evidence=IEA;ISO] [GO:0042277 "peptide binding" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0047485 "protein
N-terminus binding" evidence=IEA;ISO] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 RGD:1307139
GO:GO:0005525 GO:GO:0005524 GO:GO:0008104 GO:GO:0006979
GO:GO:0006917 GO:GO:0003677 GO:GO:0001666 GO:GO:0045944
GO:GO:0006366 GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353
GO:GO:0009650 GO:GO:0005675 GO:GO:0006283 GO:GO:0032564
GO:GO:0035315 GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
HSSP:O29889 EMBL:BC098856 IPI:IPI00363457 RefSeq:NP_001026814.1
UniGene:Rn.44012 ProteinModelPortal:Q4G005 STRING:Q4G005
PhosphoSite:Q4G005 PRIDE:Q4G005 Ensembl:ENSRNOT00000018422
GeneID:291703 KEGG:rno:291703 UCSC:RGD:1307139 InParanoid:Q4G005
NextBio:633050 Genevestigator:Q4G005 Uniprot:Q4G005
Length = 782
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 129/196 (65%), Positives = 157/196 (80%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E+E D PG ++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPL
Sbjct: 20 EEEEEDEDDAPGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPL 76
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 137 TEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 197 CRLRNAEGEATELITE 212
>UNIPROTKB|E2RN68 [details] [associations]
symbol:ERCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5'
DNA helicase activity" evidence=IEA] [GO:0035315 "hair cell
differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:AAEX03011839
Ensembl:ENSCAFT00000007273 Uniprot:E2RN68
Length = 779
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 129/196 (65%), Positives = 156/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E+E D PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPL
Sbjct: 17 EDEEEDEDDVPGNE-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHGSRPL 73
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 74 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 133
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 134 TEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 193
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 194 CRLRNSEGEATELITE 209
>MGI|MGI:95414 [details] [associations]
symbol:Ercc3 "excision repair cross-complementing rodent
repair deficiency, complementation group 3" species:10090 "Mus
musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000441 "SSL2-core TFIIH complex"
evidence=ISO] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005525 "GTP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006265 "DNA topological change" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008104 "protein
localization" evidence=ISO] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISO] [GO:0009411
"response to UV" evidence=ISO] [GO:0009650 "UV protection"
evidence=IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0032564 "dATP
binding" evidence=ISO] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=ISO] [GO:0035315 "hair cell differentiation"
evidence=ISO] [GO:0042277 "peptide binding" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95414 GO:GO:0005525
GO:GO:0005524 GO:GO:0008104 GO:GO:0006979 GO:GO:0006917
GO:GO:0003677 GO:GO:0001666 GO:GO:0045944 GO:GO:0006366
GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:S71186 EMBL:BC016595 EMBL:BC026575 IPI:IPI00113070 PIR:A48994
RefSeq:NP_598419.1 UniGene:Mm.282335 ProteinModelPortal:P49135
SMR:P49135 STRING:P49135 PhosphoSite:P49135 PaxDb:P49135
PRIDE:P49135 DNASU:13872 Ensembl:ENSMUST00000025241 GeneID:13872
KEGG:mmu:13872 UCSC:uc008eje.1 InParanoid:P49135 NextBio:284792
Bgee:P49135 Genevestigator:P49135 GermOnline:ENSMUSG00000024382
Uniprot:P49135
Length = 783
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 129/196 (65%), Positives = 157/196 (80%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E+E D PG ++ VP AA K V D+++ DE+GAKDYR QM LK DH SRPL
Sbjct: 20 EEEEEDEDDIPGNE-SQEAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPL 76
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 137 TEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 197 CRLRNAEGEATELITE 212
>UNIPROTKB|Q60HG1 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9541 "Macaca fascicularis"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006468 "protein phosphorylation"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0006979 "response to oxidative stress" evidence=ISS]
[GO:0008022 "protein C-terminus binding" evidence=ISS] [GO:0008104
"protein localization" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 HOVERGEN:HBG051499
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:AB125166 ProteinModelPortal:Q60HG1 Uniprot:Q60HG1
Length = 782
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 128/196 (65%), Positives = 156/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E++ D PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPL
Sbjct: 20 EDEEDDEEDAPGND-PQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 137 TEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 197 CRLRNSEGEATELITE 212
>UNIPROTKB|F1RXZ5 [details] [associations]
symbol:ERCC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IEA] [GO:0035315 "hair cell
differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
GeneTree:ENSGT00390000002204 KO:K10843 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:FP102347
EMBL:FP340363 RefSeq:XP_003133336.2 Ensembl:ENSSSCT00000017121
GeneID:100517918 KEGG:ssc:100517918 Uniprot:F1RXZ5
Length = 782
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 127/196 (64%), Positives = 156/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E++ D PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPL
Sbjct: 20 EDEEDDEEDAPGND-SQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHASRPL 76
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 137 TEYLRKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 197 CRLRNSEGEATELITE 212
>UNIPROTKB|P19447 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9606 "Homo sapiens" [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0032564
"dATP binding" evidence=IEA] [GO:0042277 "peptide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0047485 "protein
N-terminus binding" evidence=IPI] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA;IMP;TAS] [GO:0006265 "DNA
topological change" evidence=IMP] [GO:0005675 "holo TFIIH complex"
evidence=IDA;TAS] [GO:0006917 "induction of apoptosis"
evidence=IDA;IMP] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=TAS] [GO:0003677
"DNA binding" evidence=TAS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA;IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IDA;TAS] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0006289 "nucleotide-excision repair"
evidence=IMP;TAS] [GO:0008104 "protein localization" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP;TAS] [GO:0035315 "hair cell
differentiation" evidence=IMP] [GO:0000717 "nucleotide-excision
repair, DNA duplex unwinding" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=IMP] [GO:0009411 "response to UV" evidence=IMP]
[GO:0006979 "response to oxidative stress" evidence=IMP]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=IDA] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] Reactome:REACT_216
Reactome:REACT_71 InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
Reactome:REACT_116125 GO:GO:0009411 GO:GO:0019048 GO:GO:0008104
GO:GO:0016032 GO:GO:0006979 GO:GO:0006917 GO:GO:0003684
GO:GO:0001666 Reactome:REACT_1675 GO:GO:0045944 GO:GO:0016887
EMBL:CH471103 GO:GO:0042277 GO:GO:0004003 GO:GO:0006368
GO:GO:0008134 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000075 Reactome:REACT_1788 GO:GO:0008353
EMBL:AC110926 GO:GO:0009650 GO:GO:0005675 GO:GO:0006370
GO:GO:0000718 GO:GO:0050434 GO:GO:0006363 GO:GO:0006362
GO:GO:0006361 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
GO:GO:0033683 MIM:601675 Orphanet:453 Orphanet:670 Orphanet:220295
GO:GO:0000441 CTD:2071 eggNOG:COG1061 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:M31899 EMBL:AY163769 EMBL:BC008820 IPI:IPI00747053 PIR:A35661
RefSeq:NP_000113.1 UniGene:Hs.469872 ProteinModelPortal:P19447
SMR:P19447 DIP:DIP-83N IntAct:P19447 STRING:P19447
PhosphoSite:P19447 DMDM:119541 PaxDb:P19447 PRIDE:P19447 DNASU:2071
Ensembl:ENST00000285398 GeneID:2071 KEGG:hsa:2071 UCSC:uc002toe.1
GeneCards:GC02M128014 HGNC:HGNC:3435 HPA:CAB037153 MIM:133510
MIM:610651 neXtProt:NX_P19447 Orphanet:276252 PharmGKB:PA27849
InParanoid:P19447 PhylomeDB:P19447 ChiTaRS:ERCC3 GenomeRNAi:2071
NextBio:8425 ArrayExpress:P19447 Bgee:P19447 CleanEx:HS_ERCC3
Genevestigator:P19447 GermOnline:ENSG00000163161 Uniprot:P19447
Length = 782
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 128/196 (65%), Positives = 156/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E++ D PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPL
Sbjct: 20 EDEEDDEEDAPGND-PQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 137 TEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRE 196
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 197 CRLRNSEGEATELITE 212
>UNIPROTKB|Q1RMT1 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9913 "Bos taurus" [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISS] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0009411 "response to UV" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0047485 "protein
N-terminus binding" evidence=ISS] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0016887 GO:GO:0004672 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
EMBL:BC114729 IPI:IPI00704863 RefSeq:NP_001039453.1
UniGene:Bt.19954 ProteinModelPortal:Q1RMT1 STRING:Q1RMT1
PRIDE:Q1RMT1 Ensembl:ENSBTAT00000027687 GeneID:507984
KEGG:bta:507984 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 InParanoid:Q1RMT1 KO:K10843 OMA:SRVTDPQ
OrthoDB:EOG4KD6KG NextBio:20868296 GO:GO:0043138 GO:GO:0006265
GO:GO:0000717 TIGRFAMs:TIGR00603 Uniprot:Q1RMT1
Length = 782
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 127/196 (64%), Positives = 155/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E++ D PG E VP AA K V D++ DE+GAKDYR QM LK DH SRPL
Sbjct: 20 EDEEDEEDDAPGNDTQE-AVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
+YL++LSKT VP+GI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 137 TDYLRKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 197 CRLRNSEGEATELITE 212
>UNIPROTKB|Q5RA62 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9601 "Pongo abelii" [GO:0000075 "cell
cycle checkpoint" evidence=ISS] [GO:0000717 "nucleotide-excision
repair, DNA duplex unwinding" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006468 "protein phosphorylation" evidence=ISS] [GO:0006917
"induction of apoptosis" evidence=ISS] [GO:0006979 "response to
oxidative stress" evidence=ISS] [GO:0008022 "protein C-terminus
binding" evidence=ISS] [GO:0008104 "protein localization"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=ISS]
[GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0043138
"3'-5' DNA helicase activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 CTD:2071
HOVERGEN:HBG051499 KO:K10843 GO:GO:0043138 GO:GO:0006265
GO:GO:0000717 TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:CR859159
RefSeq:NP_001125797.1 UniGene:Pab.19064 ProteinModelPortal:Q5RA62
GeneID:100172725 KEGG:pon:100172725 Uniprot:Q5RA62
Length = 782
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 127/196 (64%), Positives = 155/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E++ D PG ++ VP AA K V D++ DE+GAKDYR QM LK DH SRPL
Sbjct: 20 EDEEDDEEDAPGND-PQEAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPL 76
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAE VCRP H+HEYKLTAYSLYAAVSVGL+T DI
Sbjct: 77 WVAPDGHIFLEAFSPVYKYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQTSDI 136
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V+Q LL+DPVI++
Sbjct: 137 TEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESSHPDVIQHLLQDPVIRE 196
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR ++ LI +
Sbjct: 197 CRLRNSEGEATELITE 212
>UNIPROTKB|F1NDN0 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 GeneTree:ENSGT00390000002204
TIGRFAMs:TIGR00603 EMBL:AADN02016819 EMBL:AADN02016820
IPI:IPI00819385 Ensembl:ENSGALT00000038117 ArrayExpress:F1NDN0
Uniprot:F1NDN0
Length = 782
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 128/196 (65%), Positives = 155/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E+E D PG+ ++ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPL
Sbjct: 19 EDEEEEEDDAPGKE-SQEAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPL 75
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI
Sbjct: 76 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDI 135
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VP+GI++FI LCT+SYGKVKLVLK NRYF+ES +V+Q+LL+D VI+D
Sbjct: 136 TEYLQKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPDVIQQLLQDHVIKD 195
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR + LI +
Sbjct: 196 CRLRNAEGEETELITE 211
>UNIPROTKB|F1NZ23 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006979 "response to oxidative stress" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008104
"protein localization" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IEA] [GO:0035315 "hair cell differentiation"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0033683
GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 IPI:IPI00585393
EMBL:AADN02016819 EMBL:AADN02016820 Ensembl:ENSGALT00000018775
ArrayExpress:F1NZ23 Uniprot:F1NZ23
Length = 787
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 128/196 (65%), Positives = 155/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E+E D PG+ ++ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPL
Sbjct: 17 EDEEEEEDDAPGKE-SQEAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPL 73
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI
Sbjct: 74 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDI 133
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VP+GI++FI LCT+SYGKVKLVLK NRYF+ES +V+Q+LL+D VI+D
Sbjct: 134 TEYLQKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPDVIQQLLQDHVIKD 193
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR + LI +
Sbjct: 194 CRLRNAEGEETELITE 209
>UNIPROTKB|Q5ZKK7 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0005675
"holo TFIIH complex" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006468 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0005675 Reactome:REACT_115612 CTD:2071 eggNOG:COG1061
HOGENOM:HOG000160172 HOVERGEN:HBG051499 KO:K10843 OrthoDB:EOG4KD6KG
TIGRFAMs:TIGR00603 EMBL:AJ720077 IPI:IPI00585393
RefSeq:NP_001006523.1 UniGene:Gga.4898 HSSP:O29889
ProteinModelPortal:Q5ZKK7 STRING:Q5ZKK7 GeneID:424226
KEGG:gga:424226 InParanoid:Q5ZKK7 NextBio:20826586 Uniprot:Q5ZKK7
Length = 788
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 128/196 (65%), Positives = 155/196 (79%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E E+E D PG+ ++ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPL
Sbjct: 17 EDEEEEEDDAPGKE-SQEAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPL 73
Query: 69 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDI 128
WVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP HIHEYKLTAYSLYAAVSVGL+T DI
Sbjct: 74 WVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDI 133
Query: 129 IEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQD 188
EYL++LSKT VP+GI++FI LCT+SYGKVKLVLK NRYF+ES +V+Q+LL+D VI+D
Sbjct: 134 TEYLQKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPDVIQQLLQDHVIKD 193
Query: 189 CRLRRDTEDSQTLINQ 204
CRLR + LI +
Sbjct: 194 CRLRNAEGEETELITE 209
>WB|WBGene00013441 [details] [associations]
symbol:Y66D12A.15 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 OMA:SKINVIC EMBL:AL161712 RefSeq:NP_499487.1
ProteinModelPortal:Q95PZ4 SMR:Q95PZ4 STRING:Q95PZ4 PaxDb:Q95PZ4
EnsemblMetazoa:Y66D12A.15 GeneID:176584 KEGG:cel:CELE_Y66D12A.15
UCSC:Y66D12A.15 CTD:176584 WormBase:Y66D12A.15 InParanoid:Q95PZ4
NextBio:893182 Uniprot:Q95PZ4
Length = 789
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 121/188 (64%), Positives = 149/188 (79%)
Query: 24 DEDGVPVAAKKNVEKDDAA-VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFS 82
+ VP AA N+ ++A+ V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFS
Sbjct: 31 ETSSVPKAASHNLNGENASSVMTDEFGAKDYRKDMPLKGDFTARPLWVAPDGHIFLESFS 90
Query: 83 PVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPD 142
PVY+HA DFLIAI+EPVCRP+HIHEY+LTAYSLYAAVSVGL+T DIIEYL+RLSK+ +P
Sbjct: 91 PVYKHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQTKDIIEYLERLSKSQLPK 150
Query: 143 GIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLI 202
G++ F+ +CT+SYGKVKLVLKHNRYF+ES ++V+QKLLKD VIQ C L + +Q
Sbjct: 151 GVITFVQMCTVSYGKVKLVLKHNRYFVESRHSDVMQKLLKDSVIQSCILDDRVQPAQQTE 210
Query: 203 NQADKKLK 210
A +K+K
Sbjct: 211 LPAQEKIK 218
>UNIPROTKB|G3V1S1 [details] [associations]
symbol:ERCC3 "Excision repair cross-complementing rodent
repair deficiency, complementation group 3 (Xeroderma pigmentosum
group B complementing), isoform CRA_b" species:9606 "Homo sapiens"
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0032564 "dATP
binding" evidence=IEA] [GO:0042277 "peptide binding" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005525 GO:GO:0005524 GO:GO:0003677
GO:GO:0001666 EMBL:CH471103 GO:GO:0042277 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008353 EMBL:AC110926 GO:GO:0009650 GO:GO:0032564
GO:GO:0000441 TIGRFAMs:TIGR00603 UniGene:Hs.469872 HGNC:HGNC:3435
ChiTaRS:ERCC3 ProteinModelPortal:G3V1S1 SMR:G3V1S1
Ensembl:ENST00000493187 ArrayExpress:G3V1S1 Bgee:G3V1S1
Uniprot:G3V1S1
Length = 718
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 107/148 (72%), Positives = 128/148 (86%)
Query: 57 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLY 116
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HEYKLTAYSLY
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 117 AAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEV 176
AAVSVGL+T DI EYL++LSKT VPDGI++FI LCT+SYGKVKLVLKHNRYF+ES +V
Sbjct: 61 AAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDV 120
Query: 177 LQKLLKDPVIQDCRLRRDTEDSQTLINQ 204
+Q LL+DPVI++CRLR ++ LI +
Sbjct: 121 IQHLLQDPVIRECRLRNSEGEATELITE 148
>DICTYBASE|DDB_G0278729 [details] [associations]
symbol:repB "transcription factor IIH subunit"
species:44689 "Dictyostelium discoideum" [GO:0009650 "UV
protection" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IEP] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;ISS] [GO:0005675 "holo
TFIIH complex" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex
portion of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core
TFIIH complex portion of NEF3 complex" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0278729 GO:GO:0005524 GO:GO:0006355
GenomeReviews:CM000152_GR GO:GO:0003684 GO:GO:0006366
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0006289 GO:GO:0009650 GO:GO:0000443
GO:GO:0000442 eggNOG:COG1061 KO:K10843 OMA:SRVTDPQ
TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:U77065 RefSeq:XP_647819.1
ProteinModelPortal:O00835 STRING:O00835 EnsemblProtists:DDB0214830
GeneID:8621779 KEGG:ddi:DDB_G0278729 InParanoid:O00835
ProtClustDB:CLSZ2729383 Uniprot:O00835
Length = 800
Score = 494 (179.0 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 100/184 (54%), Positives = 131/184 (71%)
Query: 18 DPGEPLDEDG-VPVAAKKNVEKDDAAVPE-DEFGAK-DYRAQMVLKPDHKSRPLWVAPNG 74
D E L+E G + KK A + +E G+ DY + +LK D+KSRP+WV P+G
Sbjct: 28 DYEEDLEESGEFNQSIKKTTNTSSATLTSSEEKGSLLDYSKRCILKQDNKSRPIWVCPDG 87
Query: 75 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKR 134
HIFLE+FS +Y+ A DFL+AIAEPVCRP++IHEY+LT YSLYAAVSVGLET+DII L R
Sbjct: 88 HIFLETFSAIYKQASDFLVAIAEPVCRPQNIHEYQLTPYSLYAAVSVGLETNDIITVLGR 147
Query: 135 LSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQDCRLRRD 194
LSK ++P + +F+ CT SYGKVKLVL+ N+YF+ES + EVL+ LLKD I R++
Sbjct: 148 LSKLALPKEVEQFVRQCTQSYGKVKLVLQKNKYFVESAYPEVLEFLLKDSSIATARIKPT 207
Query: 195 TEDS 198
E+S
Sbjct: 208 LEES 211
>CGD|CAL0005155 [details] [associations]
symbol:orf19.2857 species:5476 "Candida albicans" [GO:0005675
"holo TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0010525 "regulation of transposition,
RNA-mediated" evidence=IEA] [GO:0070816 "phosphorylation of RNA
polymerase II C-terminal domain" evidence=IEA] [GO:0001111
"promoter clearance from RNA polymerase II promoter" evidence=IEA]
[GO:0034644 "cellular response to UV" evidence=IEA] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0000019
"regulation of mitotic recombination" evidence=IEA] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IEA]
[GO:0001113 "transcriptional open complex formation at RNA
polymerase II promoter" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005155
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000080 EMBL:AACQ01000079
GO:GO:0006289 eggNOG:COG1061 KO:K10843 TIGRFAMs:TIGR00603
RefSeq:XP_715788.1 RefSeq:XP_715839.1 ProteinModelPortal:Q5A1Y8
STRING:Q5A1Y8 GeneID:3642537 GeneID:3642603 KEGG:cal:CaO19.10376
KEGG:cal:CaO19.2857 Uniprot:Q5A1Y8
Length = 843
Score = 480 (174.0 bits), Expect = 5.8e-45, P = 5.8e-45
Identities = 97/163 (59%), Positives = 117/163 (71%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
FG D+ + + LKPDH SRP+W++PN G I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 101 FGKGDF-SYLKLKPDHFSRPIWISPNDGRIILESFSPLAEQAQDFLITIAEPISRPSHIH 159
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EY++TAYSLYAA+SVGLET DII L RLSK V + I+ FI T+SYGKVKLVLKHNR
Sbjct: 160 EYRITAYSLYAAISVGLETDDIISVLNRLSKVPVAESIINFIKAATVSYGKVKLVLKHNR 219
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRDTE--DSQTLINQADK 207
YF+ES A++LQ LLKDPVI R++ S LI A +
Sbjct: 220 YFVESTQADILQMLLKDPVIGPLRIQSSENIVTSNGLITSASE 262
>TAIR|locus:2177901 [details] [associations]
symbol:XPB1 "homolog of xeroderma pigmentosum
complementation group B 1" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0009636 "response to toxic substance"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009411 "response to UV"
evidence=IEP] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009411
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 EMBL:U29168 EMBL:AY550923 EMBL:AY039547
EMBL:AY113008 IPI:IPI00536770 PIR:S71206 RefSeq:NP_568592.1
UniGene:At.6482 ProteinModelPortal:Q38861 SMR:Q38861 IntAct:Q38861
STRING:Q38861 PaxDb:Q38861 PRIDE:Q38861 EnsemblPlants:AT5G41370.1
GeneID:834139 KEGG:ath:AT5G41370 GeneFarm:4453 TAIR:At5g41370
InParanoid:Q38861 OMA:YAYTIVD PhylomeDB:Q38861
ProtClustDB:CLSN2689906 Genevestigator:Q38861 GermOnline:AT5G41370
Uniprot:Q38861
Length = 767
Score = 473 (171.6 bits), Expect = 2.1e-44, P = 2.1e-44
Identities = 93/152 (61%), Positives = 115/152 (75%)
Query: 39 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 98
+D+ E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEP
Sbjct: 38 EDSRDGEGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEP 96
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
VCRPE +HEY LT +SLYAAVSVGLET II L +LSKT +P ++EFI+ T +YGKV
Sbjct: 97 VCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKV 156
Query: 159 KLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
KLVLK NRYFIESPF EVL++LL D VI R
Sbjct: 157 KLVLKKNRYFIESPFPEVLKRLLSDDVINRAR 188
>TAIR|locus:2177891 [details] [associations]
symbol:XPB2 "homolog of Xeroderma pigmentosum
complementation group B 2" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0006289
EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AY550923 PIR:S71206
ProtClustDB:CLSN2689906 EMBL:AF308595 IPI:IPI00545479
RefSeq:NP_568591.1 UniGene:At.24438 ProteinModelPortal:Q9FUG4
SMR:Q9FUG4 STRING:Q9FUG4 PaxDb:Q9FUG4 PRIDE:Q9FUG4
EnsemblPlants:AT5G41360.1 GeneID:834138 KEGG:ath:AT5G41360
GeneFarm:4454 TAIR:At5g41360 InParanoid:Q9FUG4 PhylomeDB:Q9FUG4
Genevestigator:Q9FUG4 GermOnline:AT5G41360 Uniprot:Q9FUG4
Length = 766
Score = 471 (170.9 bits), Expect = 3.5e-44, P = 3.5e-44
Identities = 93/152 (61%), Positives = 114/152 (75%)
Query: 39 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 98
+D+ E E +D+ + LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEP
Sbjct: 38 EDSRDGEGEEKRRDF-TDLELKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEP 96
Query: 99 VCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKV 158
VCRPE +HEY LT +SLYAAVSVGLET II L +LSKT +P I++FI+ T +YGKV
Sbjct: 97 VCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPGEIIDFIHASTANYGKV 156
Query: 159 KLVLKHNRYFIESPFAEVLQKLLKDPVIQDCR 190
KLVLK NRYFIESPF EVL++LL D VI R
Sbjct: 157 KLVLKKNRYFIESPFPEVLKRLLSDDVINRAR 188
>POMBASE|SPAC17A5.06 [details] [associations]
symbol:ptr8 "transcription factor TFIIH complex ERCC-3
subunit" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=ISO]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000991 "core
RNA polymerase II binding transcription factor activity"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IMP] [GO:0034644 "cellular response to UV"
evidence=IMP] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17A5.06 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0034644 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000991 GO:GO:0005675 GO:GO:0006283
GO:GO:0016973 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AB027988 PIR:T37821
RefSeq:NP_593474.1 ProteinModelPortal:O13768 IntAct:O13768
STRING:O13768 EnsemblFungi:SPAC17A5.06.1 GeneID:2542174
KEGG:spo:SPAC17A5.06 OrthoDB:EOG4QJVWB NextBio:20803245
GO:GO:0000439 GO:GO:0000112 Uniprot:O13768
Length = 804
Score = 462 (167.7 bits), Expect = 4.3e-43, P = 4.3e-43
Identities = 98/192 (51%), Positives = 125/192 (65%)
Query: 9 EVEDESYVDDPGEPLDEDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 68
E +D+SY P ++ + N + + FG D+ + LK DH +RPL
Sbjct: 32 EEDDDSYKPAPRIRINNNKTKAQTTTNSNEARQSGISAMFGQNDFSNLLGLKLDHTARPL 91
Query: 69 WVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETHD 127
W+ P +G I LE+FSP+ A DFL+ I+EPV RP IHEY++TAYSLYAAVSVGL+T D
Sbjct: 92 WINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIHEYRITAYSLYAAVSVGLKTED 151
Query: 128 IIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYFIESPFAEVLQKLLKDPVIQ 187
II L RLSKT +P IV+FI CT+SYGKVKLVLK NRYFIES A VL+ LL+DPVI
Sbjct: 152 IIAVLDRLSKTPIPPSIVDFIRACTVSYGKVKLVLKKNRYFIESGDASVLRLLLRDPVIG 211
Query: 188 DCRLRRDTEDSQ 199
R+ T+ S+
Sbjct: 212 PLRIDYSTQSSK 223
>SGD|S000001405 [details] [associations]
symbol:SSL2 "Component of RNA polymerase transcription factor
TFIIH holoenzyme" species:4932 "Saccharomyces cerevisiae"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0010525
"regulation of transposition, RNA-mediated" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA;IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000019
"regulation of mitotic recombination" evidence=IMP] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IDA]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000990 "core
RNA polymerase binding transcription factor activity" evidence=IC]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0001113 "transcriptional
open complex formation at RNA polymerase II promoter" evidence=IMP]
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA;IDA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=IDA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 SGD:S000001405 GO:GO:0005524
GO:GO:0003677 EMBL:BK006942 GO:GO:0004003 EMBL:Z38059
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0070816
GO:GO:0005675 GO:GO:0016973 GO:GO:0033683 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 OrthoDB:EOG4QJVWB GO:GO:0000439
GO:GO:0000112 GO:GO:0010525 GO:GO:0001113 GO:GO:0000019 EMBL:M94176
EMBL:L01414 EMBL:AY692883 PIR:S31272 RefSeq:NP_012123.1
ProteinModelPortal:Q00578 SMR:Q00578 DIP:DIP-731N IntAct:Q00578
MINT:MINT-573804 STRING:Q00578 PaxDb:Q00578 PeptideAtlas:Q00578
EnsemblFungi:YIL143C GeneID:854663 KEGG:sce:YIL143C CYGD:YIL143c
NextBio:977238 Genevestigator:Q00578 GermOnline:YIL143C
GO:GO:0001111 Uniprot:Q00578
Length = 843
Score = 453 (164.5 bits), Expect = 5.0e-42, P = 5.0e-42
Identities = 89/148 (60%), Positives = 110/148 (74%)
Query: 48 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 106
F + D+ + + L+PDH SRPLW++P+ G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 107 EYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNR 166
EYK+TAYSLYAAVSVGLET DII L RLSK V + I+ FI T+SYGKVKLV+KHNR
Sbjct: 172 EYKITAYSLYAAVSVGLETDDIISVLDRLSKVPVAESIINFIKGATISYGKVKLVIKHNR 231
Query: 167 YFIESPFAEVLQKLLKDPVIQDCRLRRD 194
YF+E+ A++LQ LL D VI R+ D
Sbjct: 232 YFVETTQADILQMLLNDSVIGPLRIDSD 259
>ASPGD|ASPL0000009371 [details] [associations]
symbol:AN8201 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 OMA:SRVTDPQ TIGRFAMs:TIGR00603
EnsemblFungi:CADANIAT00004248 Uniprot:C8V766
Length = 818
Score = 411 (149.7 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 88/166 (53%), Positives = 113/166 (68%)
Query: 45 EDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPE 103
+ FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP
Sbjct: 67 DPNFGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPT 125
Query: 104 HIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLK 163
H+HEY+LT SLYAAVSVGL DII +L RL+KT +P+ I FI T SYGK+K+VLK
Sbjct: 126 HLHEYRLTGNSLYAAVSVGLLPQDIINFLDRLTKTPLPESIKSFIVEFTKSYGKIKVVLK 185
Query: 164 HNRYFIESPFAEVLQKLLKDPVIQDCRLRRDTEDSQTLINQADKKL 209
HNR+F+ES E+LQ LL+D VI R++ S+ + QA K+
Sbjct: 186 HNRFFVESTDPEMLQMLLQDEVIGSQRVQA----SEGITQQAAPKM 227
>GENEDB_PFALCIPARUM|PF10_0369 [details] [associations]
symbol:PF10_0369 "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
EMBL:AE014185 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843 TIGRFAMs:TIGR00603
RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
Uniprot:Q8IJ31
Length = 886
Score = 339 (124.4 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 66/156 (42%), Positives = 100/156 (64%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 92 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 151
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P+ ++ I S+GKVKLVL+ N+Y+
Sbjct: 152 QLTIFSLYAAISVGITLDELLINLDKFSKNVLPNELISNITKSAESFGKVKLVLRENKYY 211
Query: 169 IESPFAEVLQKLLKDPVIQDCRL-RRDTEDSQTLIN 203
IE+ L LL + IQ+ R+ D + + +I+
Sbjct: 212 IEATNKSELDYLLNNDTIQNARIYSTDNNNDKNMIS 247
>UNIPROTKB|Q8IJ31 [details] [associations]
symbol:PF10_0369 "DNA repair helicase rad25, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 EMBL:AE014185 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
Uniprot:Q8IJ31
Length = 886
Score = 339 (124.4 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 66/156 (42%), Positives = 100/156 (64%)
Query: 49 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEY 108
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE+
Sbjct: 92 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 151
Query: 109 KLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFINLCTLSYGKVKLVLKHNRYF 168
+LT +SLYAA+SVG+ +++ L + SK +P+ ++ I S+GKVKLVL+ N+Y+
Sbjct: 152 QLTIFSLYAAISVGITLDELLINLDKFSKNVLPNELISNITKSAESFGKVKLVLRENKYY 211
Query: 169 IESPFAEVLQKLLKDPVIQDCRL-RRDTEDSQTLIN 203
IE+ L LL + IQ+ R+ D + + +I+
Sbjct: 212 IEATNKSELDYLLNNDTIQNARIYSTDNNNDKNMIS 247
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.137 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 219 211 0.00081 112 3 11 22 0.39 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 591 (63 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.02u 0.10s 20.12t Elapsed: 00:00:16
Total cpu time: 20.02u 0.10s 20.12t Elapsed: 00:00:16
Start: Thu Aug 15 16:01:23 2013 End: Thu Aug 15 16:01:39 2013