RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11631
         (219 letters)



>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 149

 Score = 27.5 bits (61), Expect = 0.95
 Identities = 5/35 (14%), Positives = 12/35 (34%)

Query: 77  FLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT 111
           F E F       +   + +   + + EH+   +  
Sbjct: 69  FFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETM 103


>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces
           cerevisiae [TaxId: 4932]}
          Length = 134

 Score = 27.1 bits (60), Expect = 1.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 77  FLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT 111
           F + FSP ++  H   I     V   +HI E ++ 
Sbjct: 52  FFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVA 86


>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 117

 Score = 24.9 bits (54), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 169 IESPFAEVLQKLLKDPVIQDCRLRR 193
            E+P+ + ++ L  DP IQ+C  RR
Sbjct: 58  FENPYVDAIKSLWNDPGIQECYDRR 82


>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 114

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 173 FAEVLQKLLKDPVIQDCRLRRDT 195
           F E  + L +D  ++ C  R + 
Sbjct: 59  FYEHAKALWEDEGVRACYERSNE 81


>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 121

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 168 FIESPFAEVLQKLLKDPVIQDCRLRR 193
           F+ +  A V+++L KD  +Q C  R 
Sbjct: 58  FMTAELAGVIKRLWKDSGVQACFNRS 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 835,848
Number of extensions: 39135
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 18
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)