BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11632
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V3D|A Chain A, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3D|B Chain B, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3E|A Chain A, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3E|B Chain B, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3F|A Chain A, Acid-Beta-Glucosidase Produced In Carrot
pdb|2V3F|B Chain B, Acid-Beta-Glucosidase Produced In Carrot
pdb|2VT0|A Chain A, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2VT0|B Chain B, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2WCG|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2WCG|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2XWD|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWD|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWE|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
pdb|2XWE|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
Length = 505
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 215/379 (56%), Gaps = 35/379 (9%)
Query: 85 LLLINTEASIGISYAFGRVPIGGCDFSTRAYTYDDIPNDKKLEKFNLTTEDFQYKIPLIQ 144
LLL + + GI Y RVP+ CDFS R YTY D P+D +L F+L ED + KIPLI
Sbjct: 105 LLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIH 164
Query: 145 QANRLRGEPLRLVGSAWSAPAWMKTNNALTGRGELKTQ----YYQTWAQYLIMFLDFYKR 200
+A +L P+ L+ S W++P W+KTN A+ G+G LK Q Y+QTWA+Y + FLD Y
Sbjct: 165 RALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAE 224
Query: 201 EQLSFWALTTGNEPINGDLPSFLPFVPKFNSMGWHPKSVATWIANNLGPTLRSSQHNATK 260
+L FWA+T NEP G L + F +G+ P+ +IA +LGPTL +S H+ +
Sbjct: 225 HKLQFWAVTAENEPSAGLLSGY-----PFQCLGFTPEHQRDFIARDLGPTLANSTHHNVR 279
Query: 261 ILAIDDQRFVLPWWLEQVC----------NIGLRMFQDKLPIPEKILRKDIPSMNVVERK 310
+L +DDQR +LP W + V I + + D L + L E
Sbjct: 280 LLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLG---------ETH 330
Query: 311 YLFKLYILVYTAFAGIKGLFSDKPWDLIKVQLGSWSRAEQYISDIIENLNHGLVAWLEWN 370
LF +L FA + K W+ V+LGSW R QY II NL + +V W +WN
Sbjct: 331 RLFPNTML----FAS-EACVGSKFWEQ-SVRLGSWDRGMQYSHSIITNLLYHVVGWTDWN 384
Query: 371 LALNTQGGTNWKNNFLDAPIIVNAAKDEFYKQPMFYAIGHFSRFIKPGS-RVLKANSRSR 429
LALN +GG NW NF+D+PIIV+ KD FYKQPMFY +GHFS+FI GS RV S+
Sbjct: 385 LALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKN 444
Query: 430 TVEVLATIDKDENHVVVVL 448
++ +A + D + VVVVL
Sbjct: 445 DLDAVALMHPDGSAVVVVL 463
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MGWSPFALAKRVGDSLGPTIKTS-NLATKIFMLDDQKVPLPWFITLMTADNSKVESYIDG 59
+G++P + LGPT+ S + ++ MLDDQ++ LP + ++ D + Y+ G
Sbjct: 251 LGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTD-PEAAKYVHG 309
Query: 60 VGIHWYWDQFIPV-TVVDTVHKKYPRLLLINTEASIGISYAFGRVPIGGCDFSTRAYTYD 118
+ +HWY D P + H+ +P +L +EA +G + V +G D + Y++
Sbjct: 310 IAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQ-YSHS 368
Query: 119 DIPN 122
I N
Sbjct: 369 IITN 372
>pdb|1OGS|A Chain A, Human Acid-Beta-Glucosidase
pdb|1OGS|B Chain B, Human Acid-Beta-Glucosidase
pdb|1Y7V|A Chain A, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|1Y7V|B Chain B, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|2F61|A Chain A, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2F61|B Chain B, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2J25|A Chain A, Partially Deglycosylated Glucoceramidase
pdb|2J25|B Chain B, Partially Deglycosylated Glucoceramidase
pdb|2NSX|A Chain A, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|B Chain B, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|C Chain C, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|D Chain D, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NT0|A Chain A, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|B Chain B, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|C Chain C, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|D Chain D, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT1|A Chain A, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|B Chain B, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|C Chain C, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|D Chain D, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|3GXD|A Chain A, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|B Chain B, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|C Chain C, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|D Chain D, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXF|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXI|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXM|A Chain A, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|B Chain B, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|C Chain C, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|D Chain D, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3RIK|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
Length = 497
Score = 274 bits (701), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 216/379 (56%), Gaps = 35/379 (9%)
Query: 85 LLLINTEASIGISYAFGRVPIGGCDFSTRAYTYDDIPNDKKLEKFNLTTEDFQYKIPLIQ 144
LLL + + GI Y RVP+ CDFS R YTY D P+D +L F+L ED + KIPLI
Sbjct: 103 LLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIH 162
Query: 145 QANRLRGEPLRLVGSAWSAPAWMKTNNALTGRGELKTQ----YYQTWAQYLIMFLDFYKR 200
+A +L P+ L+ S W++P W+KTN A+ G+G LK Q Y+QTWA+Y + FLD Y
Sbjct: 163 RALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAE 222
Query: 201 EQLSFWALTTGNEPINGDLPSFLPFVPKFNSMGWHPKSVATWIANNLGPTLRSSQHNATK 260
+L FWA+T NEP G L + F +G+ P+ +IA +LGPTL +S H+ +
Sbjct: 223 HKLQFWAVTAENEPSAGLLSGY-----PFQCLGFTPEHQRDFIARDLGPTLANSTHHNVR 277
Query: 261 ILAIDDQRFVLPWWLEQVC----------NIGLRMFQDKLPIPEKILRKDIPSMNVVERK 310
+L +DDQR +LP W + V I + + D L P K + E
Sbjct: 278 LLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL-APAK--------ATLGETH 328
Query: 311 YLFKLYILVYTAFAGIKGLFSDKPWDLIKVQLGSWSRAEQYISDIIENLNHGLVAWLEWN 370
LF +L FA + K W+ V+LGSW R QY II NL + +V W +WN
Sbjct: 329 RLFPNTML----FAS-EACVGSKFWEQ-SVRLGSWDRGMQYSHSIITNLLYHVVGWTDWN 382
Query: 371 LALNTQGGTNWKNNFLDAPIIVNAAKDEFYKQPMFYAIGHFSRFIKPGS-RVLKANSRSR 429
LALN +GG NW NF+D+PIIV+ KD FYKQPMFY +GHFS+FI GS RV S+
Sbjct: 383 LALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKN 442
Query: 430 TVEVLATIDKDENHVVVVL 448
++ +A + D + VVVVL
Sbjct: 443 DLDAVALMHPDGSAVVVVL 461
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MGWSPFALAKRVGDSLGPTIKTS-NLATKIFMLDDQKVPLPWFITLMTADNSKVESYIDG 59
+G++P + LGPT+ S + ++ MLDDQ++ LP + ++ D + Y+ G
Sbjct: 249 LGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTD-PEAAKYVHG 307
Query: 60 VGIHWYWDQFIPV-TVVDTVHKKYPRLLLINTEASIGISYAFGRVPIGGCDFSTRAYTYD 118
+ +HWY D P + H+ +P +L +EA +G + V +G D + Y++
Sbjct: 308 IAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQ-YSHS 366
Query: 119 DIPN 122
I N
Sbjct: 367 IITN 370
>pdb|2WKL|A Chain A, Velaglucerase Alfa
pdb|2WKL|B Chain B, Velaglucerase Alfa
Length = 497
Score = 274 bits (701), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 216/379 (56%), Gaps = 35/379 (9%)
Query: 85 LLLINTEASIGISYAFGRVPIGGCDFSTRAYTYDDIPNDKKLEKFNLTTEDFQYKIPLIQ 144
LLL + + GI Y RVP+ CDFS R YTY D P+D +L F+L ED + KIPLI
Sbjct: 103 LLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIH 162
Query: 145 QANRLRGEPLRLVGSAWSAPAWMKTNNALTGRGELKTQ----YYQTWAQYLIMFLDFYKR 200
+A +L P+ L+ S W++P W+KTN A+ G+G LK Q Y+QTWA+Y + FLD Y
Sbjct: 163 RALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAE 222
Query: 201 EQLSFWALTTGNEPINGDLPSFLPFVPKFNSMGWHPKSVATWIANNLGPTLRSSQHNATK 260
+L FWA+T NEP G L + F +G+ P+ +IA +LGPTL +S H+ +
Sbjct: 223 HKLQFWAVTAENEPSAGLLSGY-----PFQCLGFTPEHQRDFIARDLGPTLANSTHHNVR 277
Query: 261 ILAIDDQRFVLPWWLEQVC----------NIGLRMFQDKLPIPEKILRKDIPSMNVVERK 310
+L +DDQR +LP W + V I + + D L P K + E
Sbjct: 278 LLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL-APAK--------ATLGETH 328
Query: 311 YLFKLYILVYTAFAGIKGLFSDKPWDLIKVQLGSWSRAEQYISDIIENLNHGLVAWLEWN 370
LF +L FA + K W+ V+LGSW R QY II NL + +V W +WN
Sbjct: 329 RLFPNTML----FAS-EACVGSKFWEQ-SVRLGSWDRGMQYSHSIITNLLYHVVGWTDWN 382
Query: 371 LALNTQGGTNWKNNFLDAPIIVNAAKDEFYKQPMFYAIGHFSRFIKPGS-RVLKANSRSR 429
LALN +GG NW NF+D+PIIV+ KD FYKQPMFY +GHFS+FI GS RV S+
Sbjct: 383 LALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKN 442
Query: 430 TVEVLATIDKDENHVVVVL 448
++ +A + D + VVVVL
Sbjct: 443 DLDAVALMHPDGSAVVVVL 461
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MGWSPFALAKRVGDSLGPTIKTS-NLATKIFMLDDQKVPLPWFITLMTADNSKVESYIDG 59
+G++P + LGPT+ S + ++ MLDDQ++ LP + ++ D + Y+ G
Sbjct: 249 LGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTD-PEAAKYVHG 307
Query: 60 VGIHWYWDQFIPV-TVVDTVHKKYPRLLLINTEASIGISYAFGRVPIGGCDFSTRAYTYD 118
+ +HWY D P + H+ +P +L +EA +G + V +G D + Y++
Sbjct: 308 IAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQ-YSHS 366
Query: 119 DIPN 122
I N
Sbjct: 367 IITN 370
>pdb|3KE0|A Chain A, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KE0|B Chain B, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KEH|A Chain A, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
pdb|3KEH|B Chain B, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
Length = 497
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 216/379 (56%), Gaps = 35/379 (9%)
Query: 85 LLLINTEASIGISYAFGRVPIGGCDFSTRAYTYDDIPNDKKLEKFNLTTEDFQYKIPLIQ 144
LLL + + GI Y RVP+ CDFS R YTY D P+D +L F+L ED + KIPLI
Sbjct: 103 LLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIH 162
Query: 145 QANRLRGEPLRLVGSAWSAPAWMKTNNALTGRGELKTQ----YYQTWAQYLIMFLDFYKR 200
+A +L P+ L+ S W++P W+KTN A+ G+G LK Q Y+QTWA+Y + FLD Y
Sbjct: 163 RALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAE 222
Query: 201 EQLSFWALTTGNEPINGDLPSFLPFVPKFNSMGWHPKSVATWIANNLGPTLRSSQHNATK 260
+L FWA+T NEP G L + F +G+ P+ +IA +LGPTL +S H+ +
Sbjct: 223 HKLQFWAVTAENEPSAGLLSGY-----PFQCLGFTPEHQRDFIARDLGPTLANSTHHNVR 277
Query: 261 ILAIDDQRFVLPWWLEQVC----------NIGLRMFQDKLPIPEKILRKDIPSMNVVERK 310
+L +DDQR +LP W + V I + + D L P K + E
Sbjct: 278 LLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL-APAK--------ATLGETH 328
Query: 311 YLFKLYILVYTAFAGIKGLFSDKPWDLIKVQLGSWSRAEQYISDIIENLNHGLVAWLEWN 370
LF +L FA + K W+ V+LGSW R QY II +L + +V W +WN
Sbjct: 329 RLFPNTML----FAS-EACVGSKFWEQ-SVRLGSWDRGMQYSHSIITSLLYHVVGWTDWN 382
Query: 371 LALNTQGGTNWKNNFLDAPIIVNAAKDEFYKQPMFYAIGHFSRFIKPGS-RVLKANSRSR 429
LALN +GG NW NF+D+PIIV+ KD FYKQPMFY +GHFS+FI GS RV S+
Sbjct: 383 LALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKN 442
Query: 430 TVEVLATIDKDENHVVVVL 448
++ +A + D + VVVVL
Sbjct: 443 DLDAVALMHPDGSAVVVVL 461
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 1 MGWSPFALAKRVGDSLGPTIKTS-NLATKIFMLDDQKVPLPWFITLMTADNSKVESYIDG 59
+G++P + LGPT+ S + ++ MLDDQ++ LP + ++ D + Y+ G
Sbjct: 249 LGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTD-PEAAKYVHG 307
Query: 60 VGIHWYWDQFIPV-TVVDTVHKKYPRLLLINTEASIGISYAFGRVPIGGCD 109
+ +HWY D P + H+ +P +L +EA +G + V +G D
Sbjct: 308 IAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWD 358
>pdb|2WNW|A Chain A, The Crystal Structure Of Srfj From Salmonella Typhimurium
pdb|2WNW|B Chain B, The Crystal Structure Of Srfj From Salmonella Typhimurium
Length = 447
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 164/356 (46%), Gaps = 33/356 (9%)
Query: 97 SYAFGRVPIGGCDFSTRAYTYDDIPNDKKLEKFNLTTEDFQYKIPLIQQANRLRGEPLRL 156
+Y R+PI CDFS Y Y D D + + + + D + IPLI A RL ++L
Sbjct: 82 NYTLARMPIQSCDFSLGNYAYVDSSADLQQGRLSFS-RDEAHLIPLISGALRLNPH-MKL 139
Query: 157 VGSAWSAPAWMKTNNALTGRGELKTQYYQTWAQYLIMFLDFYKREQLSFWALTTGNEPIN 216
+ S WS PA+MKTNN + G G+L+ + Y WA +I +L Y+R ++ AL+ NEP+
Sbjct: 140 MASPWSPPAFMKTNNDMNGGGKLRRECYADWADIIINYLLEYRRHGINVQALSVQNEPVA 199
Query: 217 GDLPSFLPFVPKFNSMGWHPKSVATWIANNLGPTLRSSQHNATKILAIDDQRFVLPWWLE 276
V ++S + + + L P L + +I D + L W E
Sbjct: 200 ---------VKTWDSCLYSVEEETAFAVQYLRPRLARQGMDEMEIYIWDHDKDGLVDWAE 250
Query: 277 -----QVCNIGLRMFQDKLPIPEKILRKDIPSMNVVERKYLFKLYILVYTAFAGIKGLFS 331
+ G+ + + + + ++K LF + + AG
Sbjct: 251 LAFADEANYKGINGLAFHWYTGDHFSQIQYLAQCLPDKKLLFSEGCVPMESDAG------ 304
Query: 332 DKPWDLIKVQLGSWSRAEQYISDIIENLNHGLVAWLEWNLALNTQGGTNWKNNFLDAPII 391
Q+ W Y+ D+I N G +++WNL LN++GG N + N +API
Sbjct: 305 --------SQIRHW---HTYLHDMIGNFKSGCSGFIDWNLLLNSEGGPNHQGNLCEAPIQ 353
Query: 392 VNAAKDEFYKQPMFYAIGHFSRFIKPGSRVLKANSRSRTVEVLATIDKDENHVVVV 447
+A D + +Y IGHF R+++PG+RV+ ++S +E + ++ D V+VV
Sbjct: 354 YDAQNDVLRRNHSWYGIGHFCRYVRPGARVMLSSSYDNLLEEVGFVNPDGERVLVV 409
>pdb|1NOF|A Chain A, The First Crystallographic Structure Of A Xylanase From
Glycosyl Hydrolase Family 5: Implications For Catalysis
pdb|2Y24|A Chain A, Structural Basis For Substrate Recognition By Erwinia
Chrysanthemi Gh5 Glucuronoxylanase
Length = 383
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 139 KIPLIQQANRLRGEPLRLVGSAWSAPAWMKTNNALTGRGELKTQYYQTWAQYLIMFLDFY 198
++P +QA L +++ + WS PA+MK+NN+L G L Y + +L+ F +
Sbjct: 64 QLPSARQAVSLGA---KIMATPWSPPAYMKSNNSLINGGRLLPANYSAYTSHLLDFSKYM 120
Query: 199 KREQLSFWALTTGNEP 214
+ +A++ NEP
Sbjct: 121 QTNGAPLYAISIQNEP 136
>pdb|3GTN|A Chain A, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3GTN|B Chain B, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3KL0|A Chain A, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|B Chain B, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|C Chain C, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|D Chain D, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL3|A Chain A, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|B Chain B, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|C Chain C, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|D Chain D, Crystal Structure Of Ligand Bound Xync
pdb|3KL5|A Chain A, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|B Chain B, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|C Chain C, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|D Chain D, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
Length = 401
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 156 LVGSAWSAPAWMK---TNNALTGRGELKTQYYQTWAQYLIMFLDFYKREQLSFWALTTGN 212
+ S W+ P+ M N T LK Y +AQ+L F+ F K ++ +A++ N
Sbjct: 80 VFASPWNPPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNGVNLYAISVQN 139
Query: 213 EP 214
EP
Sbjct: 140 EP 141
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 406 YAIGHFSRFIKPGSRVLKANSRSRTVEVLATIDKDENHVVVVLFN 450
Y + HFS+F++PG + A +++ V + K +N VV+V N
Sbjct: 288 YNMAHFSKFVRPGYVRIDA-TKNPNANVYVSAYKGDNKVVIVAIN 331
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 351 YISDIIENLNHGLVAWLEWNLALNTQG-GTNWKNNFLDAPIIVNAAKDEFYKQPMFYAIG 409
Y D NL++G A+ + N QG G++W N + I N +E+ +Q +AIG
Sbjct: 136 YTRDASGNLDYGTQAYAYY--PGNYQGAGSSWYN--YNQSNIRNPGSEEYGRQTFTHAIG 191
Query: 410 HFSRFIKPG 418
H PG
Sbjct: 192 HALGLAHPG 200
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 351 YISDIIENLNHGLVAWLEWNLALNTQG-GTNWKNNFLDAPIIVNAAKDEFYKQPMFYAIG 409
Y D NL++G A+ + N QG G++W N + I N +E+ +Q +AIG
Sbjct: 119 YTRDASGNLDYGTQAYAYY--PGNYQGAGSSWYN--YNQSNIRNPGSEEYGRQTFTHAIG 174
Query: 410 HFSRFIKPG 418
H PG
Sbjct: 175 HALGLAHPG 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,320,217
Number of Sequences: 62578
Number of extensions: 628307
Number of successful extensions: 1240
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 22
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)