RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11632
(450 letters)
>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 354
Score = 244 bits (623), Expect = 8e-78
Identities = 138/339 (40%), Positives = 188/339 (55%), Gaps = 34/339 (10%)
Query: 95 GISYAFGRVPIGGCDFSTRAYTYDDIPNDKKLEKFNLTTEDFQYKIPLIQQANRLRGEPL 154
GI Y RVP+ CDFS R YTY D P+D +L F+L ED + KIPLI +A +L P+
Sbjct: 36 GIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPV 95
Query: 155 RLVGSAWSAPAWMKTNNALTG----RGELKTQYYQTWAQYLIMFLDFYKREQLSFWALTT 210
L+ S W++P W+KTN A+ G +G+ Y+QTWA+Y + FLD Y +L FWA+T
Sbjct: 96 SLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTA 155
Query: 211 GNEPINGDLPSFLPFVPKFNSMGWHPKSVATWIANNLGPTLRSSQHNATKILAIDDQRFV 270
NEP G L + F +G+ P+ +IA +LGPTL +S H+ ++L +DDQR +
Sbjct: 156 ENEPSAGLLSGY-----PFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLL 210
Query: 271 LPWWLEQ----------VCNIGLRMFQDKLPIPEKILRKDIPSMNVVERKYLFKLYILVY 320
LP W + V I + + D L + L + R + +
Sbjct: 211 LPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE-------THRLFPNTMLFASE 263
Query: 321 TAFAGIKGLFSDKPWDLIKVQLGSWSRAEQYISDIIENLNHGLVAWLEWNLALNTQGGTN 380
K W+ V+LGSW R QY II NL + +V W +WNLALN +GG N
Sbjct: 264 ACV-------GSKFWE-QSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPN 315
Query: 381 WKNNFLDAPIIVNAAKDEFYKQPMFYAIGHFSRFIKPGS 419
W NF+D+PIIV+ KD FYKQPMFY +GHFS+FI GS
Sbjct: 316 WVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGS 354
Score = 63.2 bits (153), Expect = 1e-11
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 1 MGWSPFALAKRVGDSLGPTIKTSNL-ATKIFMLDDQKVPLPWFITLMTADNSKVESYIDG 59
+G++P + LGPT+ S ++ MLDDQ++ LP + ++ D + Y+ G
Sbjct: 172 LGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTD-PEAAKYVHG 230
Query: 60 VGIHWYWDQFIP-VTVVDTVHKKYPRLLLINTEASIGISYAFGRVPIGG 107
+ +HWY D P + H+ +P +L +EA +G + V +G
Sbjct: 231 IAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS 279
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase,
catalytic domain {Erwinia chrysanthemi [TaxId: 556]}
Length = 277
Score = 131 bits (330), Expect = 1e-35
Identities = 39/285 (13%), Positives = 99/285 (34%), Gaps = 52/285 (18%)
Query: 133 TEDFQYKIPLIQQANRLRGEPLRLVGSAWSAPAWMKTNNALTGRGELKTQYYQTWAQYLI 192
+ + ++P +QA L +++ + WS PA+MK+NN+L G L Y + +L+
Sbjct: 45 SSKWNIQLPSARQAVSLG---AKIMATPWSPPAYMKSNNSLINGGRLLPANYSAYTSHLL 101
Query: 193 MFLDFYKREQLSFWALTTGNEPINGDLPSFLPFVPKFNSMGWHPKSVATWIANNLGPTLR 252
F + + +A++ NEP + P + S W +++ +
Sbjct: 102 DFSKYMQTNGAPLYAISIQNEPD---------WKPDYESCEWSGDEFKSYLKSQG----- 147
Query: 253 SSQHNATKILAIDDQRFVLPWWLEQVCNIGLRMFQDKLPIPEKILRKDIPSMNVVERKYL 312
S+ + K++ + F + + + + P + +
Sbjct: 148 -SKFGSLKVIVAESLGFNPALTDPVLKDSDASKYVSIIGGHL---YGTTPKPYPLAQNAG 203
Query: 313 FKLYILVYTAFAGIKGLFSDKPWDLIKVQLGSWSRAEQYISDIIENLNHGLVAWLEWNLA 372
+L++ + K +W+ A + +++ ++ A++ W +
Sbjct: 204 KQLWMTEHYV--------DSKQSA------NNWTSAIEVGTELNASMVSNYSAYVWWYIR 249
Query: 373 LNTQGGTNWKNNFLDAPIIVNAAKDEFYKQPMFYAIGHFSRFIKP 417
+ + + Y + ++RF++P
Sbjct: 250 RS------------YGLLTED-----GKVSKRGYVMSQYARFVRP 277
Score = 34.3 bits (78), Expect = 0.024
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 12/95 (12%)
Query: 1 MGWSPFALAKRVGDSLGPTIKTSNLATKIFMLDDQKVPLPWFITLMTADNSKVESYIDGV 60
WS + G + + + + + P +S Y+ +
Sbjct: 132 CEWSGDEFKSYLKS-QGSKFGSLKVIVAESLGFNPALTDPVL------KDSDASKYVSII 184
Query: 61 GIHWYWDQFIPVTVVDTVHKKYPRLLLINTEASIG 95
G H Y T + L TE +
Sbjct: 185 GGHLYGT-----TPKPYPLAQNAGKQLWMTEHYVD 214
>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 143
Score = 40.3 bits (94), Expect = 8e-05
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 380 NWKNNFLDAPII--VNAAKDEFYKQPMFYAIGHFSRFIKPGS 419
+F + ++ NA + + P F A+G FSR+ S
Sbjct: 4 CIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRS 45
>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission
yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}
Length = 61
Score = 26.7 bits (59), Expect = 0.96
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 343 GSWSRAEQYISDIIENLNHGLVAWLEWN 370
SW I I + L +L W
Sbjct: 6 DSWEDLVSSIDTIERKDDGTLEIYLTWK 33
>d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon
Sulfolobus solfataricus, DNA polymerase IV [TaxId:
2287]}
Length = 101
Score = 25.8 bits (56), Expect = 5.1
Identities = 7/83 (8%), Positives = 19/83 (22%), Gaps = 7/83 (8%)
Query: 76 DTVHKKYPRLLLINTEASIGISYAFGRVPIGGCDFSTRAYTYDDIPNDKKLEKFNLTTED 135
+ + R + + V D + +
Sbjct: 19 EEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSR-------GRTFPHGISKETA 71
Query: 136 FQYKIPLIQQANRLRGEPLRLVG 158
+ + L+Q+ +R +G
Sbjct: 72 YSESVKLLQKILEEDERKIRRIG 94
>d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli
[TaxId: 562]}
Length = 127
Score = 25.4 bits (55), Expect = 8.7
Identities = 11/89 (12%), Positives = 28/89 (31%)
Query: 251 LRSSQHNATKILAIDDQRFVLPWWLEQVCNIGLRMFQDKLPIPEKILRKDIPSMNVVERK 310
+ + + +L Q + LR DK + + ++N + +
Sbjct: 26 RLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQT 85
Query: 311 YLFKLYILVYTAFAGIKGLFSDKPWDLIK 339
L + L+ +K + W ++
Sbjct: 86 QLRQAVQLLTRTELTLKQDYGQSVWAELE 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,786,232
Number of extensions: 84935
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 12
Length of query: 450
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,199,356
Effective search space: 434166872
Effective search space used: 434166872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)