Query psy11633
Match_columns 127
No_of_seqs 98 out of 121
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 23:38:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3701|consensus 100.0 2.1E-37 4.5E-42 267.3 6.8 111 8-120 289-411 (411)
2 smart00524 DWB Domain B in dwa 100.0 2.6E-33 5.7E-38 218.5 3.4 88 14-103 71-171 (171)
3 cd00050 MH2 MH2 domain; C term 100.0 9.3E-33 2E-37 216.2 4.4 88 14-103 76-176 (176)
4 PF03166 MH2: MH2 domain; Int 100.0 1.4E-31 3.1E-36 205.8 0.9 82 15-105 77-181 (181)
5 smart00524 DWB Domain B in dwa 89.2 0.34 7.3E-06 38.4 2.7 40 25-66 72-114 (171)
6 KOG3701|consensus 69.5 4.5 9.7E-05 36.3 2.9 54 33-87 302-358 (411)
7 PF13939 TisB_toxin: Toxin Tis 51.0 9.7 0.00021 22.5 1.2 13 104-116 16-28 (28)
8 PRK14754 toxic peptide TisB; P 42.5 18 0.0004 21.4 1.5 13 104-116 16-28 (29)
9 smart00460 TGc Transglutaminas 35.0 49 0.0011 20.2 2.7 29 76-104 31-59 (68)
10 PF13817 DDE_Tnp_IS66_C: IS66 25.1 54 0.0012 20.1 1.6 15 104-118 12-26 (39)
11 PF13464 DUF4115: Domain of un 21.8 61 0.0013 21.3 1.5 11 94-104 7-18 (77)
No 1
>KOG3701|consensus
Probab=100.00 E-value=2.1e-37 Score=267.33 Aligned_cols=111 Identities=40% Similarity=0.633 Sum_probs=90.9
Q ss_pred eCCchhhhhhhhhccCCeeeEecCCCcccc------eEEecCCCCCCC--cccc----ccCCcceeeeeeeeEEEeEEEE
Q psy11633 8 PLSSSYVQLFISLIQPSNIFQQLSFFTQRP------IFCIRNKCNRTE--IPFA----VKVPRQFSLSVIILWYFVLISR 75 (127)
Q Consensus 8 ~~~~~~~~~f~~clsdsaiFvqs~~f~q~p------If~i~~~cn~kn--sefA----~~Vp~gfs~~~~~~~~~~c~iR 75 (127)
.|+.-=-||+++|+||+.|||||+++++.. +.+++|+|+.|- .+|+ ..+-+|+..... +++||+||
T Consensus 289 ~L~~~~gdVw~~n~sd~pIFVqS~~ln~~~g~~~~~v~ki~Pg~~iKvFd~~~~~~l~~s~~~g~~~~~~--l~~~ctIr 366 (411)
T KOG3701|consen 289 QLSYENGDVWLYNLSDYPIFVQSPNLNYPNGRTLDTVHKVPPGYSIKVFDFEFAQQLPTSADPGFESVDQ--LRKMCTIR 366 (411)
T ss_pred eeeEecCcEEEEecCCCceeeeCCCCcCCCCCcccceEeeCCCceeEeechHHHhhhhhcccCCCccccc--cccceeEE
Confidence 444434689999999999999999998655 557888887662 2233 345555555554 78999999
Q ss_pred EEEeeecCCCcCcccccccceEEEEEecCchhHHHHHHHHhCCCC
Q psy11633 76 MSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPH 120 (127)
Q Consensus 76 iSFvKGwG~~Y~Rq~It~tPCWiEi~l~~plqwlD~Vl~qmg~p~ 120 (127)
||||||||++|+||+||+||||||||||+||||||+||+|||+|+
T Consensus 367 iSFvKGWG~~Y~Rq~It~~PCWiEvhl~~p~~~lD~vl~~~~~~~ 411 (411)
T KOG3701|consen 367 ISFVKGWGECYSRQDITSTPCWIEVHLNGPLQWLDTVLTQMGSPP 411 (411)
T ss_pred EEEeccccccccccccccCcceEEEecCCcHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999999663
No 2
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=99.97 E-value=2.6e-33 Score=218.47 Aligned_cols=88 Identities=32% Similarity=0.554 Sum_probs=73.9
Q ss_pred hhhhhhhccCCeeeEecCCCcc------cceEEecCCCCCC---Ccccc----ccCCcceeeeeeeeEEEeEEEEEEEee
Q psy11633 14 VQLFISLIQPSNIFQQLSFFTQ------RPIFCIRNKCNRT---EIPFA----VKVPRQFSLSVIILWYFVLISRMSFVK 80 (127)
Q Consensus 14 ~~~f~~clsdsaiFvqs~~f~q------~pIf~i~~~cn~k---nsefA----~~Vp~gfs~~~~~~~~~~c~iRiSFvK 80 (127)
-+||++|+||++||||||+++. .+|++++|+|+.| +.+|+ ....++++..+. +++||+|||||||
T Consensus 71 g~Vw~~~~s~~~VFVqS~~~~~~~~~~~~~V~Kv~pg~~lKvFd~~~f~~~l~~~~~~~~~~~~~--l~~~c~iriSFvK 148 (171)
T smart00524 71 GDVWLYNRSDSPIFVQSPYLDEPGGRTLDTVHKLPPGYSIKVFDMEKFAQLLARELAKGFEGVYD--LARMCTIRISFVK 148 (171)
T ss_pred CeEEEEEcCCCCeEEcCCCcccccCCCCcceEEECCCCeEEEeChHHHHHHHHhhhcccCccccc--hhhheeEEEEEec
Confidence 5899999999999999999884 3578888888876 22233 356677766665 6789999999999
Q ss_pred ecCCCcCcccccccceEEEEEec
Q psy11633 81 GWGAEYHRQDVTSTPCWIEIHLH 103 (127)
Q Consensus 81 GwG~~Y~Rq~It~tPCWiEi~l~ 103 (127)
|||++|+||+||+||||||||||
T Consensus 149 GWG~~Y~Rq~it~tPCWiEi~l~ 171 (171)
T smart00524 149 GWGPDYSRQTITSTPCWIEVHLN 171 (171)
T ss_pred ccCCcccccccccCceEEEEEcC
Confidence 99999999999999999999997
No 3
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins
Probab=99.97 E-value=9.3e-33 Score=216.21 Aligned_cols=88 Identities=31% Similarity=0.489 Sum_probs=69.8
Q ss_pred hhhhhhhccCCeeeEecCCCccc------ceEEecCCCCCC---Ccccc----ccCCcceeeeeeeeEEEeEEEEEEEee
Q psy11633 14 VQLFISLIQPSNIFQQLSFFTQR------PIFCIRNKCNRT---EIPFA----VKVPRQFSLSVIILWYFVLISRMSFVK 80 (127)
Q Consensus 14 ~~~f~~clsdsaiFvqs~~f~q~------pIf~i~~~cn~k---nsefA----~~Vp~gfs~~~~~~~~~~c~iRiSFvK 80 (127)
-+||++|+||++|||||++++.. .|++++|+|+.| ..+|+ ..+.++++..+. +++||+|||||||
T Consensus 76 g~Vw~~~~S~~~VFVqS~~l~~~~~~~~~~V~Kv~pg~~lKvFd~~~f~~~l~~~~~~~~~~~~~--l~~~c~iriSFvK 153 (176)
T cd00050 76 GEVWAYNLSDHPIFVQSPTLDYPLGRPLLTVHKVPPGYSLKVFDFEQFEQLLRQAAGSTFDGVYD--LRRMCTIRISFVK 153 (176)
T ss_pred CeEEEEEcCCCCEEEcCCCCCcccCCCCcceEEeCCCCEEEEeCHHHHHHHHHhhhcccCccHHH--HHhhceEEEEEec
Confidence 58999999999999999998744 356666666665 12222 244555554443 5679999999999
Q ss_pred ecCCCcCcccccccceEEEEEec
Q psy11633 81 GWGAEYHRQDVTSTPCWIEIHLH 103 (127)
Q Consensus 81 GwG~~Y~Rq~It~tPCWiEi~l~ 103 (127)
|||++|+||+||+||||||||||
T Consensus 154 GWG~~Y~Rq~it~tPCWiEi~l~ 176 (176)
T cd00050 154 GWGEDYPRQDITSTPCWIEVHLN 176 (176)
T ss_pred cccccccccccCCCceEEEEEcC
Confidence 99999999999999999999997
No 4
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the SMAD (Mothers against decapentaplegic (MAD) homologue) (also called MH2 for MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C terminus of MH2 [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1MK2_A 1U7F_A 1MJS_A 1KHU_A 1DD1_C 1G88_A 1U7V_B 1MR1_B 1YGS_A 3DIT_B ....
Probab=99.96 E-value=1.4e-31 Score=205.81 Aligned_cols=82 Identities=41% Similarity=0.705 Sum_probs=58.3
Q ss_pred hhhhhhccCCeeeEecCCCcccceEEecCCCCCCCccccccCCcceeeeeeee-----------------------EEEe
Q psy11633 15 QLFISLIQPSNIFQQLSFFTQRPIFCIRNKCNRTEIPFAVKVPRQFSLSVIIL-----------------------WYFV 71 (127)
Q Consensus 15 ~~f~~clsdsaiFvqs~~f~q~pIf~i~~~cn~knsefA~~Vp~gfs~~~~~~-----------------------~~~~ 71 (127)
+|+++|+||++|||||++++... ..+...+.|||+|+++++|+. +.++
T Consensus 77 ~V~l~n~s~~pVFVqS~~~n~~~---------~~~~~~V~Kv~pg~~~kvFd~~~f~~~l~~~~~~~~~~~~~~~~l~~~ 147 (181)
T PF03166_consen 77 NVWLYNRSDSPVFVQSPTLNYQH---------GFHPGTVCKVPPGYSLKVFDMEKFAQLLRQAVRRGYEAEEDVDELRKM 147 (181)
T ss_dssp EEEEEE-SSS-EEEE-HHHHHHT---------TSTTTSEEEE-TT-EEEEEEHHHHHHHHHHHHTTHHHHTTTHHGGGGG
T ss_pred eEEEEECCCCCEEEccCCCCccc---------CcCCCCcEEeCCCceeeccCHHHHHHHHHhhhccccccccchhhhhhc
Confidence 59999999999999998776433 112223445555555554421 3579
Q ss_pred EEEEEEEeeecCCCcCcccccccceEEEEEecCc
Q psy11633 72 LISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGP 105 (127)
Q Consensus 72 c~iRiSFvKGwG~~Y~Rq~It~tPCWiEi~l~~p 105 (127)
|+||||||||||++|+||+||+||||||||||+|
T Consensus 148 c~iriSFvKGWG~~Y~R~~it~~PCWiEi~l~~p 181 (181)
T PF03166_consen 148 CTIRISFVKGWGPEYRRQDITSCPCWIEIHLNGP 181 (181)
T ss_dssp GEEEEEESSB-STTSSSSSGGGSSSEEEEEEHH-
T ss_pred ceEEEEEEcccCCcccccCcccCCeEEEEEccCC
Confidence 9999999999999999999999999999999988
No 5
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=89.25 E-value=0.34 Score=38.40 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=31.2
Q ss_pred eeeEecCCCcccceEEecCCCCCCCc---cccccCCcceeeeeee
Q psy11633 25 NIFQQLSFFTQRPIFCIRNKCNRTEI---PFAVKVPRQFSLSVII 66 (127)
Q Consensus 25 aiFvqs~~f~q~pIf~i~~~cn~kns---efA~~Vp~gfs~~~~~ 66 (127)
.+|+. +-.+.|||+.+++||+.+. ..++|||+|+++++|+
T Consensus 72 ~Vw~~--~~s~~~VFVqS~~~~~~~~~~~~~V~Kv~pg~~lKvFd 114 (171)
T smart00524 72 DVWLY--NRSDSPIFVQSPYLDEPGGRTLDTVHKLPPGYSIKVFD 114 (171)
T ss_pred eEEEE--EcCCCCeEEcCCCcccccCCCCcceEEECCCCeEEEeC
Confidence 44443 5568899999999997532 3667999999999985
No 6
>KOG3701|consensus
Probab=69.49 E-value=4.5 Score=36.28 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=36.3
Q ss_pred CcccceEEecCCCCCCCc-cc--cccCCcceeeeeeeeEEEeEEEEEEEeeecCCCcC
Q psy11633 33 FTQRPIFCIRNKCNRTEI-PF--AVKVPRQFSLSVIILWYFVLISRMSFVKGWGAEYH 87 (127)
Q Consensus 33 f~q~pIf~i~~~cn~kns-ef--A~~Vp~gfs~~~~~~~~~~c~iRiSFvKGwG~~Y~ 87 (127)
=...|||+.+++||..+- .. +.|||+|+++++|+. ...=.++-|-..|....|.
T Consensus 302 ~sd~pIFVqS~~ln~~~g~~~~~v~ki~Pg~~iKvFd~-~~~~~l~~s~~~g~~~~~~ 358 (411)
T KOG3701|consen 302 LSDYPIFVQSPNLNYPNGRTLDTVHKVPPGYSIKVFDF-EFAQQLPTSADPGFESVDQ 358 (411)
T ss_pred cCCCceeeeCCCCcCCCCCcccceEeeCCCceeEeech-HHHhhhhhcccCCCccccc
Confidence 357789999999997743 33 569999999999964 1111233455666555554
No 7
>PF13939 TisB_toxin: Toxin TisB, type I toxin-antitoxin system
Probab=51.02 E-value=9.7 Score=22.48 Aligned_cols=13 Identities=46% Similarity=0.468 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHh
Q psy11633 104 GPLQWLDKVLIQM 116 (127)
Q Consensus 104 ~plqwlD~Vl~qm 116 (127)
..||.||.||+++
T Consensus 16 a~lqlldavlk~~ 28 (28)
T PF13939_consen 16 AVLQLLDAVLKYF 28 (28)
T ss_pred HHHHHHHHHHhhC
Confidence 4689999999874
No 8
>PRK14754 toxic peptide TisB; Provisional
Probab=42.47 E-value=18 Score=21.43 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=11.2
Q ss_pred CchhHHHHHHHHh
Q psy11633 104 GPLQWLDKVLIQM 116 (127)
Q Consensus 104 ~plqwlD~Vl~qm 116 (127)
..||.||.||+++
T Consensus 16 a~lqlldavlk~~ 28 (29)
T PRK14754 16 AALQLLDAVLKYL 28 (29)
T ss_pred HHHHHHHHHHHhh
Confidence 4689999999986
No 9
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=35.02 E-value=49 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=18.0
Q ss_pred EEEeeecCCCcCcccccccceEEEEEecC
Q psy11633 76 MSFVKGWGAEYHRQDVTSTPCWIEIHLHG 104 (127)
Q Consensus 76 iSFvKGwG~~Y~Rq~It~tPCWiEi~l~~ 104 (127)
..|.++-+..+.-.......+|+|+.+.+
T Consensus 31 ~g~~~~~~~~~~~~~~~~~H~W~ev~~~~ 59 (68)
T smart00460 31 SGYLKAPDTIGGLRSIWEAHAWAEVYLEG 59 (68)
T ss_pred eeeecCCCCCcccccCCCcEEEEEEEECC
Confidence 34455555443222456778899999984
No 10
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=25.12 E-value=54 Score=20.07 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHhCC
Q psy11633 104 GPLQWLDKVLIQMGS 118 (127)
Q Consensus 104 ~plqwlD~Vl~qmg~ 118 (127)
.|..||..||++|..
T Consensus 12 ~P~~yL~~vL~~i~~ 26 (39)
T PF13817_consen 12 NPYAYLTDVLERIPN 26 (39)
T ss_pred CHHHHHHHHHHHHcc
Confidence 499999999999976
No 11
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=21.76 E-value=61 Score=21.32 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.9
Q ss_pred cceEEEEE-ecC
Q psy11633 94 TPCWIEIH-LHG 104 (127)
Q Consensus 94 tPCWiEi~-l~~ 104 (127)
-+|||||. -++
T Consensus 7 ~~sWv~V~d~dG 18 (77)
T PF13464_consen 7 GDSWVEVTDADG 18 (77)
T ss_pred CCeEEEEEeCCC
Confidence 58999999 665
Done!