Query psy11633
Match_columns 127
No_of_seqs 98 out of 121
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 23:39:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmj_D Protein mothers against 100.0 1.2E-47 4.1E-52 311.3 -0.7 112 14-127 121-245 (245)
2 1khx_A SMAD2; TGF-beta signali 100.0 1.5E-44 5E-49 290.3 3.6 112 14-127 103-227 (227)
3 1ygs_A SMAD4; tumor suppressor 100.0 4.8E-40 1.6E-44 264.7 1.3 106 15-121 78-230 (234)
4 1dd1_A SMAD4; B-sheet sandwich 100.0 1.1E-39 3.6E-44 267.5 -0.5 107 14-120 111-263 (268)
5 1dd1_A SMAD4; B-sheet sandwich 79.6 0.39 1.4E-05 39.3 0.2 42 23-66 110-155 (268)
6 3gmj_D Protein mothers against 75.3 0.79 2.7E-05 37.1 0.8 41 24-66 121-164 (245)
7 3gas_A Heme oxygenase; FMN-bin 33.1 26 0.0009 27.5 2.7 20 68-87 210-229 (259)
8 1j3e_A SEQA protein; protein-D 28.3 29 0.001 25.2 2.0 35 87-121 70-106 (115)
9 3swj_A CHUZ, putative uncharac 26.1 41 0.0014 26.0 2.7 19 68-86 210-228 (251)
10 1lrr_A SEQA protein; protein-D 24.7 38 0.0013 25.2 2.1 35 87-121 86-122 (131)
11 4dag_A Fusion glycoprotein F0; 22.9 26 0.00089 30.4 1.0 26 76-101 242-271 (415)
12 2r9i_A Putative phage capsid p 20.0 22 0.00075 26.6 0.0 13 76-88 129-141 (141)
No 1
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-47 Score=311.32 Aligned_cols=112 Identities=54% Similarity=0.832 Sum_probs=100.4
Q ss_pred hhhhhhhccCCeeeEecCCCc------ccceEEecCCCCCC---Ccccc----ccCCcceeeeeeeeEEEeEEEEEEEee
Q psy11633 14 VQLFISLIQPSNIFQQLSFFT------QRPIFCIRNKCNRT---EIPFA----VKVPRQFSLSVIILWYFVLISRMSFVK 80 (127)
Q Consensus 14 ~~~f~~clsdsaiFvqs~~f~------q~pIf~i~~~cn~k---nsefA----~~Vp~gfs~~~~~~~~~~c~iRiSFvK 80 (127)
-+||++|+||++|||||++++ ...|++|+++|+.| +.+|+ ..+.+||+..+. +++||+|||||||
T Consensus 121 G~V~~~nlS~~~IFVqS~~~n~~~g~~~~tV~KI~pg~slKiFd~~~fa~~L~qs~~~g~~~v~~--L~~~CtiRiSFvK 198 (245)
T 3gmj_D 121 GEVYAECLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYE--LTKMCTIRMSFVK 198 (245)
T ss_dssp TEEEEEECSSSCEEEEEHHHHHHTTCCTTCCEEECTTCEEEEECHHHHHHHHHHTTTTCSHHHHH--HGGGGEEEEEESS
T ss_pred CEEEEEecCCCcEEECCCcccccCCCCccceEEeCCCCeEEEeCHHHHHHHHHHHhhcCCchhhh--hhhcceeeeEeec
Confidence 489999999999999998875 44599999999987 23454 377888887765 6899999999999
Q ss_pred ecCCCcCcccccccceEEEEEecCchhHHHHHHHHhCCCCCCCCCCC
Q psy11633 81 GWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 127 (127)
Q Consensus 81 GwG~~Y~Rq~It~tPCWiEi~l~~plqwlD~Vl~qmg~p~~~~~s~s 127 (127)
|||++|+||+||+||||||||||+||||||+||+|||+|.++|||||
T Consensus 199 GWG~~Y~Rq~ItstPCWiEI~L~~pLq~LD~vL~qmg~p~~~~ss~s 245 (245)
T 3gmj_D 199 GWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS 245 (245)
T ss_dssp CCSTTSSCCSGGGSSSEEEEEEHHHHHHHHHHHTSSCCCSSCCCSCC
T ss_pred CcCcccccCCcccCCEEEEEEcChHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999997
No 2
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=100.00 E-value=1.5e-44 Score=290.32 Aligned_cols=112 Identities=50% Similarity=0.765 Sum_probs=96.7
Q ss_pred hhhhhhhccCCeeeEecCCCcc------cceEEecCCCCCC---Ccccc----ccCCcceeeeeeeeEEEeEEEEEEEee
Q psy11633 14 VQLFISLIQPSNIFQQLSFFTQ------RPIFCIRNKCNRT---EIPFA----VKVPRQFSLSVIILWYFVLISRMSFVK 80 (127)
Q Consensus 14 ~~~f~~clsdsaiFvqs~~f~q------~pIf~i~~~cn~k---nsefA----~~Vp~gfs~~~~~~~~~~c~iRiSFvK 80 (127)
-+||++|+||++|||||+++++ .+|++|+|+|+.| +.+|+ ..+.+||+..+. ++++|+|||||||
T Consensus 103 G~V~~~nlS~~~IFVqS~~~n~~~~~~~~tV~Ki~pg~~lKvFd~~~fa~~L~~~~~~~~~~v~~--L~~~C~iRISFvK 180 (227)
T 1khx_A 103 GEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQ--LTRMCTIRMSFVK 180 (227)
T ss_dssp TEEEEEECSSSCEEEECHHHHHHTTCCTTCCEEECTTCEEEEEEHHHHHHHHHHHGGGCHHHHHG--GGGGGEEEEEESC
T ss_pred CEEEEEEcCCCCEEEeCCCcccccCCCcCceEEeCCCCeEEEeCHHHHHHHHHHHhccCCCchhh--hhhceEEEEEEEc
Confidence 3799999999999999988754 4588888888766 22333 356677765554 6789999999999
Q ss_pred ecCCCcCcccccccceEEEEEecCchhHHHHHHHHhCCCCCCCCCCC
Q psy11633 81 GWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 127 (127)
Q Consensus 81 GwG~~Y~Rq~It~tPCWiEi~l~~plqwlD~Vl~qmg~p~~~~~s~s 127 (127)
|||++|+||+||+||||||||||+||||||+||+||++|+++|||||
T Consensus 181 GWG~~Y~Rq~It~tPCWiEI~l~~pL~~ld~vl~~m~~p~~~~~s~~ 227 (227)
T 1khx_A 181 GWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSVRCSSMS 227 (227)
T ss_dssp CCSSSSSCCSGGGSSSEEEEEEHHHHHHHHHHHTTSCCCSSCCCSCC
T ss_pred CCCCCCCCCCCCcCCeEEEEECCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999997
No 3
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=100.00 E-value=4.8e-40 Score=264.68 Aligned_cols=106 Identities=34% Similarity=0.576 Sum_probs=78.9
Q ss_pred hhhhhhccCCeeeEecCCCccc-------ceEEecCCCCCCC---ccccc----------------------cCCc----
Q psy11633 15 QLFISLIQPSNIFQQLSFFTQR-------PIFCIRNKCNRTE---IPFAV----------------------KVPR---- 58 (127)
Q Consensus 15 ~~f~~clsdsaiFvqs~~f~q~-------pIf~i~~~cn~kn---sefA~----------------------~Vp~---- 58 (127)
+||++|+||++|||||++++.. +|++++|+|+.|- ..|+. .++.
T Consensus 78 ~Vw~~n~S~~~IFVqS~~ln~~~~~~p~~~V~Ki~pg~~lKvFd~~~f~~~l~~~~~~~q~~~~~~~a~~~g~~~~~~~~ 157 (234)
T 1ygs_A 78 DVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSV 157 (234)
T ss_dssp EEEEEECSSSCEEEECHHHHHTTTCCTTCCCEEECTTCEEEEECHHHHHHHHHHHHHHHTC-------------------
T ss_pred cEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeCcHHHHHHHHHHhhhhhhhhhhhhhhhcccccccccc
Confidence 6999999999999999988643 6889999988761 12210 1122
Q ss_pred -cee----e------eeeeeEEEeEEEEEEEeeecCCCcCcccccccceEEEEEecCchhHHHHHHHHhCCCCC
Q psy11633 59 -QFS----L------SVIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQ 121 (127)
Q Consensus 59 -gfs----~------~~~~~~~~~c~iRiSFvKGwG~~Y~Rq~It~tPCWiEi~l~~plqwlD~Vl~qmg~p~~ 121 (127)
|+. + .. ..+++||+||||||||||++|+||+||+||||||||||+||||||+||+|||+++.
T Consensus 158 ~g~~p~~~~~~~a~~~v-~~L~~~c~iRISFvKGWG~~Y~Rq~It~tPCWiEI~l~~~l~~ld~vl~~m~~~~~ 230 (234)
T 1ygs_A 158 GGIAPAISLSAAAGIGV-DDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADP 230 (234)
T ss_dssp ----------------C-HHHHHTTEEEEESSCCCSTTSSCSSGGGSSSEEEEEEHHHHHHHHHHHHTC-----
T ss_pred cCcccccccccccccch-hhhhhceEEEEEEEcCCCCCCCCCCCCCCCeEEEEEcCHHHHHHHHHHHhCCCCCC
Confidence 221 0 01 11457999999999999999999999999999999999999999999999999863
No 4
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=100.00 E-value=1.1e-39 Score=267.53 Aligned_cols=107 Identities=35% Similarity=0.555 Sum_probs=81.5
Q ss_pred hhhhhhhccCCeeeEecCCCccc-------ceEEecCCCCCCC---cccc----------------------ccCCc---
Q psy11633 14 VQLFISLIQPSNIFQQLSFFTQR-------PIFCIRNKCNRTE---IPFA----------------------VKVPR--- 58 (127)
Q Consensus 14 ~~~f~~clsdsaiFvqs~~f~q~-------pIf~i~~~cn~kn---sefA----------------------~~Vp~--- 58 (127)
-+||++|+||++|||||++++.. +|++|+|+|+.|- ..|. ..+|.
T Consensus 111 G~Vwl~nlS~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKVFD~~~f~~~l~~~~~~~q~a~~~q~a~~~g~~~~~~~ 190 (268)
T 1dd1_A 111 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGS 190 (268)
T ss_dssp TEEEEEECSSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEEECHHHHHHHHHHHHHHHTTTTCC--------------
T ss_pred CcEEEEecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEeccHHHHHHHHHHHHhhhhhhhhhhhhhccccCCccc
Confidence 36999999999999999998642 6999999998761 1110 11222
Q ss_pred --ce----eee-----eeeeEEEeEEEEEEEeeecCCCcCcccccccceEEEEEecCchhHHHHHHHHhCCCC
Q psy11633 59 --QF----SLS-----VIILWYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPH 120 (127)
Q Consensus 59 --gf----s~~-----~~~~~~~~c~iRiSFvKGwG~~Y~Rq~It~tPCWiEi~l~~plqwlD~Vl~qmg~p~ 120 (127)
|+ ++. .-..+++||+||||||||||++|+||+||+||||||||||+||||||+||+|||.++
T Consensus 191 ~~g~~p~~~~~~~a~~~v~~L~~~C~iRISFVKGWG~~Y~Rq~ItstPCWIEI~L~~pLq~LD~vl~~m~~~~ 263 (268)
T 1dd1_A 191 VGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIAD 263 (268)
T ss_dssp ------------CCSCCHHHHHGGGEEEEEESCCCSTTSSCCSGGGSSSEEEEEEHHHHHHHHHHHHHSCC--
T ss_pred ccccccccccccccccchhhhhhceeEEEEEEcCCCCCCCCCCCCcCCeEEEEEcCHHHHHHHHHHHhCCCCC
Confidence 22 000 001256799999999999999999999999999999999999999999999999986
No 5
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=79.55 E-value=0.39 Score=39.29 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=33.9
Q ss_pred CCeeeEecCCCcccceEEecCCCCCCCc----cccccCCcceeeeeee
Q psy11633 23 PSNIFQQLSFFTQRPIFCIRNKCNRTEI----PFAVKVPRQFSLSVII 66 (127)
Q Consensus 23 dsaiFvqs~~f~q~pIf~i~~~cn~kns----efA~~Vp~gfs~~~~~ 66 (127)
+..+|++ |-++.+||+.+++||+.+. ..++|||+|+++++|+
T Consensus 110 ~G~Vwl~--nlS~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKVFD 155 (268)
T 1dd1_A 110 EGDVWVR--CLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFD 155 (268)
T ss_dssp TTEEEEE--ECSSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEEEC
T ss_pred CCcEEEE--ecCCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEEec
Confidence 4667777 5679999999999996533 2567999999999995
No 6
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=75.29 E-value=0.79 Score=37.07 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=32.1
Q ss_pred CeeeEecCCCcccceEEecCCCCCC---CccccccCCcceeeeeee
Q psy11633 24 SNIFQQLSFFTQRPIFCIRNKCNRT---EIPFAVKVPRQFSLSVII 66 (127)
Q Consensus 24 saiFvqs~~f~q~pIf~i~~~cn~k---nsefA~~Vp~gfs~~~~~ 66 (127)
..+++. +-.+.+||+.+++||+. +...++|||+|+++++|+
T Consensus 121 G~V~~~--nlS~~~IFVqS~~~n~~~g~~~~tV~KI~pg~slKiFd 164 (245)
T 3gmj_D 121 GEVYAE--CLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFN 164 (245)
T ss_dssp TEEEEE--ECSSSCEEEEEHHHHHHTTCCTTCCEEECTTCEEEEEC
T ss_pred CEEEEE--ecCCCcEEECCCcccccCCCCccceEEeCCCCeEEEeC
Confidence 456665 35689999999999953 334667999999999985
No 7
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=33.06 E-value=26 Score=27.53 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.4
Q ss_pred EEEeEEEEEEEeeecCCCcC
Q psy11633 68 WYFVLISRMSFVKGWGAEYH 87 (127)
Q Consensus 68 ~~~~c~iRiSFvKGwG~~Y~ 87 (127)
++++...+.+||+|||..|.
T Consensus 210 l~rl~p~~~r~v~GFG~a~~ 229 (259)
T 3gas_A 210 LIALDFKEGRFVKGFGQAYD 229 (259)
T ss_dssp EEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEeEEEEEccccEEEE
Confidence 56888899999999999883
No 8
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=28.31 E-value=29 Score=25.19 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=29.3
Q ss_pred CcccccccceEEEEEecCc--hhHHHHHHHHhCCCCC
Q psy11633 87 HRQDVTSTPCWIEIHLHGP--LQWLDKVLIQMGSPHQ 121 (127)
Q Consensus 87 ~Rq~It~tPCWiEi~l~~p--lqwlD~Vl~qmg~p~~ 121 (127)
+=+.|-+||=|+.-..|-+ ..-|.+||.+||-|..
T Consensus 70 kPK~Ip~TpfWViTN~NT~rKr~ml~~vm~~mg~~~~ 106 (115)
T 1j3e_A 70 KPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAE 106 (115)
T ss_dssp CCEECTTSSCEECCCSCHHHHHHHHHHHHHHTTCCHH
T ss_pred CCCcCCCCCeeeeecCChHHHHHHHHHHHHHcCCCHH
Confidence 4577999999998888876 5679999999998853
No 9
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=26.14 E-value=41 Score=25.99 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=16.6
Q ss_pred EEEeEEEEEEEeeecCCCc
Q psy11633 68 WYFVLISRMSFVKGWGAEY 86 (127)
Q Consensus 68 ~~~~c~iRiSFvKGwG~~Y 86 (127)
++++...++.|++|||..|
T Consensus 210 l~rl~p~~~r~v~GFG~a~ 228 (251)
T 3swj_A 210 LVKLEFKKGRFVKGFGQAY 228 (251)
T ss_dssp EEEEEEEEEEEEEETTEEE
T ss_pred EEEEEeeEEEEECCcceeE
Confidence 5678889999999999877
No 10
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=24.67 E-value=38 Score=25.16 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=29.4
Q ss_pred CcccccccceEEEEEecCc--hhHHHHHHHHhCCCCC
Q psy11633 87 HRQDVTSTPCWIEIHLHGP--LQWLDKVLIQMGSPHQ 121 (127)
Q Consensus 87 ~Rq~It~tPCWiEi~l~~p--lqwlD~Vl~qmg~p~~ 121 (127)
.=+.|-+||=|+.-..|-+ ..-|.+||.+||-|..
T Consensus 86 kPK~Ip~TpfWViTN~NT~rKr~ml~~vm~~mg~~~~ 122 (131)
T 1lrr_A 86 KPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAE 122 (131)
T ss_dssp CCEECTTSSCEECCCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CCCcCCCCCeEEEecCChHHHHHHHHHHHHHhCCCHH
Confidence 4578999999998888876 5679999999998853
No 11
>4dag_A Fusion glycoprotein F0; viral protein, MPV fusion protein, immune system, antibody structure, FAB structure, vaccine; HET: NAG BMA MAN; 3.39A {Human metapneumovirus}
Probab=22.89 E-value=26 Score=30.44 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=15.5
Q ss_pred EEEeeecCCCcCcc----cccccceEEEEE
Q psy11633 76 MSFVKGWGAEYHRQ----DVTSTPCWIEIH 101 (127)
Q Consensus 76 iSFvKGwG~~Y~Rq----~It~tPCWiEi~ 101 (127)
+|-|||---.|=-| -|.+||||++-.
T Consensus 242 l~~v~~~~v~Y~vqlPifGVidTpcW~~~~ 271 (415)
T 4dag_A 242 LIGVYGSSVIYMVQLPIFGVIDTPCWIIKA 271 (415)
T ss_dssp EEECTTTCEEEEEEEEEEEECSCEEEEEEE
T ss_pred EEEeeCcEEEEEEecccceeecCcceEEec
Confidence 34455544444322 478999998753
No 12
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=20.05 E-value=22 Score=26.60 Aligned_cols=13 Identities=46% Similarity=1.114 Sum_probs=0.0
Q ss_pred EEEeeecCCCcCc
Q psy11633 76 MSFVKGWGAEYHR 88 (127)
Q Consensus 76 iSFvKGwG~~Y~R 88 (127)
=+|+.|||..|.|
T Consensus 129 ~~~~~GwGTt~~R 141 (141)
T 2r9i_A 129 KDLVEGWGTFYQR 141 (141)
T ss_dssp -------------
T ss_pred ccccccceeeecC
Confidence 6899999999976
Done!