RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11633
         (127 letters)



>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental
           protein, nucleus, phosphoprotein, transcription; 2.80A
           {Drosophila melanogaster}
          Length = 245

 Score = 97.5 bits (242), Expect = 3e-26
 Identities = 50/55 (90%), Positives = 50/55 (90%)

Query: 73  ISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 127
             RMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVL QMGSPH  ISSVS
Sbjct: 191 TIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS 245


>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase
           signaling, cancer, transcription; HET: SEP; 1.80A {Homo
           sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A
           1u7f_A* 1mjs_A 1khu_A 3dit_A
          Length = 227

 Score = 96.4 bits (239), Expect = 6e-26
 Identities = 43/55 (78%), Positives = 46/55 (83%)

Query: 73  ISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQPISSVS 127
             RMSFVKGWGAEY RQ VTSTPCWIE+HL+GPLQWLDKVL QMGSP    SS+S
Sbjct: 173 TIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSVRCSSMS 227


>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal
           mediator, beta-sandwich scaffold with A three-helix
           bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP:
           b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
          Length = 234

 Score = 88.0 bits (217), Expect = 9e-23
 Identities = 30/49 (61%), Positives = 33/49 (67%)

Query: 73  ISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQ 121
           I RMSFVKGWG +Y RQ +  TPCWIEIHLH  LQ LD+VL  M     
Sbjct: 182 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADP 230


>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A
           {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
          Length = 268

 Score = 87.6 bits (216), Expect = 3e-22
 Identities = 30/49 (61%), Positives = 33/49 (67%)

Query: 73  ISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQ 121
           I RMSFVKGWG +Y RQ +  TPCWIEIHLH  LQ LD+VL  M     
Sbjct: 216 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADP 264


>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics,
           unknown function; 1.54A {Thermotoga maritima} SCOP:
           d.58.5.2
          Length = 113

 Score = 24.4 bits (53), Expect = 7.9
 Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 4/32 (12%)

Query: 94  TPCWIEIHLHGP----LQWLDKVLIQMGSPHQ 121
           TP    + +       + WL + +++ GS H 
Sbjct: 79  TPAIFTLKVENVLTEYMNWLRESVLEGGSHHH 110


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 9.9
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 8  PLSSSYVQLFISLIQPSNIF---QQL--SFFTQRP 37
          PL+ S+  L   L+ P+  F    QL   F    P
Sbjct: 8  PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP 42


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,857,782
Number of extensions: 90885
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 6
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)