RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11633
         (127 letters)



>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 190

 Score =  103 bits (259), Expect = 1e-29
 Identities = 40/47 (85%), Positives = 42/47 (89%)

Query: 73  ISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSP 119
             RMSFVKGWGAEY RQ VTSTPCWIE+HL+GPLQWLDKVL QMGSP
Sbjct: 143 TIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSP 189


>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 225

 Score =  103 bits (259), Expect = 2e-29
 Identities = 30/44 (68%), Positives = 33/44 (75%)

Query: 73  ISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQM 116
           I RMSFVKGWG +Y RQ +  TPCWIEIHLH  LQ LD+VL  M
Sbjct: 182 ILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTM 225


>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 24.7 bits (52), Expect = 4.2
 Identities = 7/55 (12%), Positives = 17/55 (30%)

Query: 68  WYFVLISRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLIQMGSPHQP 122
               +   ++    W           TP  +     G + W+D + I   + ++ 
Sbjct: 190 ANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE 244


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 24.8 bits (54), Expect = 4.3
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 100 IHLHGPLQ-WLDKVLIQMGSPHQPISSV 126
           ++  G ++ W+++  I M SP+ P  S+
Sbjct: 14  VNQDGFVKEWIEEGFIAMESPNDPKPSI 41


>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
           {Cellvibrio cellulosa [TaxId: 155077]}
          Length = 324

 Score = 24.1 bits (52), Expect = 6.0
 Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 3/22 (13%)

Query: 34  TQRPIFCIRNKCNR---TEIPF 52
           T R  F  R+       T++  
Sbjct: 277 TNRGFFSDRDGSKFYDITQMSL 298


>d2ftxa1 d.300.1.1 (A:133-221) Kinetochore protein Spc25 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 89

 Score = 23.5 bits (50), Expect = 6.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 96  CWIEIHLHG 104
           CWIE+ +HG
Sbjct: 37  CWIEVAMHG 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 475,080
Number of extensions: 19246
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.7 bits)