BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11634
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OKV|A Chain A, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|B Chain B, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|C Chain C, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|D Chain D, C-Myc Dna Unwinding Element Binding Protein
Length = 209
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 103/143 (72%)
Query: 31 VDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEI 90
V IS+IG G+C+L+GIS DT+K+++++V KIL L++FE+E GK W+ SV DK+YEI
Sbjct: 15 VGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEI 74
Query: 91 LCISQFTLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVN 150
LC+SQFTL LKGN FH AM +E FYN FLE+L+ Y +KDGKFGA+M V+
Sbjct: 75 LCVSQFTLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVH 134
Query: 151 IVNDGPVTIPLESPSEKSNTPVP 173
I NDGPVTI LESP+ + T P
Sbjct: 135 IQNDGPVTIELESPAPGTATSDP 157
>pdb|3KNF|A Chain A, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|B Chain B, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|C Chain C, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|D Chain D, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|E Chain E, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|F Chain F, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KO4|A Chain A, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|B Chain B, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|C Chain C, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|D Chain D, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|E Chain E, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|F Chain F, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO5|A Chain A, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|B Chain B, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|C Chain C, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|D Chain D, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|E Chain E, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|F Chain F, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO7|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO9|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KNP|A Chain A, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|B Chain B, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|C Chain C, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|D Chain D, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|E Chain E, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|F Chain F, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KO3|A Chain A, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|B Chain B, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|C Chain C, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|D Chain D, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|E Chain E, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|F Chain F, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KOB|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOC|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOD|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3LMT|A Chain A, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|B Chain B, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|C Chain C, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|D Chain D, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|E Chain E, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|F Chain F, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|A Chain A, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|B Chain B, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|C Chain C, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|D Chain D, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|E Chain E, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|F Chain F, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|G Chain G, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|H Chain H, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMV|A Chain A, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|B Chain B, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|C Chain C, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|D Chain D, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|E Chain E, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|F Chain F, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
Length = 164
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 35 VISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCIS 94
+IS I GL +GI ++DT +D YI+ K L L+++ N+ K W +V D YE+L +S
Sbjct: 29 IISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNND-NKTWDKNVKDLNYELLIVS 87
Query: 95 QFTLY-HGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVN 153
QFTL+ + KGN FH A ++ +FYNK +++ K Y+ K+K GKFG +M++++ N
Sbjct: 88 QFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTN 147
Query: 154 DGPVTIPLES 163
DGPVTI +++
Sbjct: 148 DGPVTIYIDT 157
>pdb|2DBO|A Chain A, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Aquifex Aeolicus
Length = 148
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 86/134 (64%), Gaps = 4/134 (2%)
Query: 31 VDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEI 90
VD V+ SI GL + +G+ + DTE+D++ +VNKIL L+IFE+E GK + SV D K EI
Sbjct: 15 VDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERGK-FQYSVLDIKGEI 73
Query: 91 LCISQFTLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSV 149
L +SQFTLY + KG +F A ++ Y KF++K+K + KV+ G FGA M V
Sbjct: 74 LVVSQFTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESG--LKVETGIFGAMMDV 131
Query: 150 NIVNDGPVTIPLES 163
I N GPVTI ++S
Sbjct: 132 FIENWGPVTIIIDS 145
>pdb|1JKE|A Chain A, D-Tyr Trnatyr Deacylase From Escherichia Coli
pdb|1JKE|B Chain B, D-Tyr Trnatyr Deacylase From Escherichia Coli
pdb|1JKE|C Chain C, D-Tyr Trnatyr Deacylase From Escherichia Coli
pdb|1JKE|D Chain D, D-Tyr Trnatyr Deacylase From Escherichia Coli
Length = 145
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 31 VDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEI 90
V+ V IG GL +L+G+ + D E+ + + ++L +IF + EGK +V +
Sbjct: 15 VEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGK-MNLNVQQAGGSV 73
Query: 91 LCISQFTLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSV 149
L +SQFTL +G +F +E Y+ F+E+ + + G+F A M V
Sbjct: 74 LVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQE--MNTQTGRFAADMQV 131
Query: 150 NIVNDGPVTIPLE 162
++VNDGPVT L+
Sbjct: 132 SLVNDGPVTFWLQ 144
>pdb|1J7G|A Chain A, Structure Of Yihz From Haemophilus Influenzae (Hi0670), A
D-Tyr- Trna(Tyr) Deacylase
Length = 144
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 31 VDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEI 90
V I IG GL +L+G+ + D + D + K+L +IF +E K +V + E+
Sbjct: 15 VKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDK-MNLNVQQAQGEL 73
Query: 91 LCISQFTLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSV 149
L +SQFTL KG +F A + Y F++K +S G+F A M V
Sbjct: 74 LIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEKLPVST---GQFAADMQV 130
Query: 150 NIVNDGPVT 158
++ NDGPVT
Sbjct: 131 SLTNDGPVT 139
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|B Chain B, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|C Chain C, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|D Chain D, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
Length = 474
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 43 LCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVS 84
L +L G+ T KD +Y+ N + + ++ NEEG R+A S +
Sbjct: 127 LGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCT 168
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 43 LCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVS 84
L +L G+ T KD +Y+ N + + ++ NEEG R+A S +
Sbjct: 127 LGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCT 168
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 43 LCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVS 84
L +L G+ T KD +Y+ N + + ++ NEEG R+A S +
Sbjct: 127 LGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCT 168
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
pdb|1R43|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
Length = 463
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 43 LCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVS 84
L +L G+ T KD +Y+ N + + ++ NEEG R+A S +
Sbjct: 128 LGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCT 169
>pdb|1XR4|A Chain A, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
pdb|1XR4|B Chain B, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
Chain/citrate- Acp Transferase [salmonella Typhimurium]
Length = 509
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 79 WASSVSDKKYEILC--ISQFTLYHGLK-GNGLTFHHAMGGADSEV 120
W +S ++K+ +C + + GLK G ++FHHA G D V
Sbjct: 33 WLASETEKRRRKICDSLEEAIRRSGLKNGXTISFHHAFRGGDKVV 77
>pdb|4ES1|A Chain A, Double-Stranded Endonuclease Activity In B. Halodurans
Clustered Regularly Interspaced Short Palindromic
Repeats (Crispr)-Associated Cas2 Protein
pdb|4ES2|A Chain A, Double-Stranded Endonuclease Activity In B. Halodurans
Clustered Regularly Interspaced Short Palindromic
Repeats (Crispr)-Associated Cas2 Protein
pdb|4ES3|A Chain A, Double-Stranded Endonuclease Activity In B. Halodurans
Clustered Regularly Interspaced Short Palindromic
Repeats (Crispr)-Associated Cas2 Protein
Length = 100
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 18 FKQLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKD 57
+ Q V+++ F C+VDS ++S+ + L LI D EKD
Sbjct: 34 YGQRVQNSVFECIVDSTQLTSLKLELTSLI-----DEEKD 68
>pdb|3BQW|A Chain A, Crystal Structure Of The Putative Capsid Protein Of
Prophage (e.coli Cft073)
Length = 351
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 48 GISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQFTLYHGLKGNGL 107
GI R++ +D+ KI + I E +GK+W+ + Y I I + G N +
Sbjct: 155 GIERYE----IDW---KIPEKNIIEQADGKKWSEQDKETHYPIYDIELYADQAGCPANVM 207
Query: 108 TFHHAMGGADSEVFYN-KFLEKLKTAYDLSK 137
MG +EV+ + +K + YDLS+
Sbjct: 208 I----MG---AEVWRTLRSFKKFRELYDLSR 231
>pdb|1TC5|A Chain A, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
pdb|1TC5|B Chain B, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
pdb|1TC5|C Chain C, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
pdb|1TC5|D Chain D, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
Length = 194
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 54 TEKDMDYIVNKILKLKIFEN---EEGKRWASSVSD-KKYEILCISQFTLYHGLKGNGLTF 109
T++ + + V +L KIF + E+ S+ + + +IL + Q +L +KG + F
Sbjct: 54 TDEALRHAVGVLLHTKIFTHFSPEKMINQPQSLEECPEMDILIVPQASLGGKVKGRSVQF 113
Query: 110 HHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMS 148
H + Y++F ++ A + + + GA S
Sbjct: 114 HQLVAKDVGAALYDRFCHFVRVARGVDESRVDANGAPRS 152
>pdb|2PX6|A Chain A, Crystal Structure Of The Thioesterase Domain Of Human
Fatty Acid Synthase Inhibited By Orlistat
pdb|2PX6|B Chain B, Crystal Structure Of The Thioesterase Domain Of Human
Fatty Acid Synthase Inhibited By Orlistat
Length = 316
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 88 YEILCISQFTLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHM 147
Y++ Q+T GN + GGA + E L Y+LS+V DGK H+
Sbjct: 230 YKLRAAEQYTPKAKYHGNVMLLRAKTGGA--------YGEDLGADYNLSQVCDGKVSVHV 281
>pdb|3N7M|A Chain A, Crystal Structure Of W1252a Mutant Of Hcr DC VPI 5995
Length = 424
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 55 EKDMDYIVNKILKLKIFENEEGKRWASSVS-DKKYEILCISQFTLYHGLKGNGLTFHHAM 113
+KD++ + N + + N W + + DK+Y ++ ++ Y KGNG+ F+
Sbjct: 217 DKDINILFNSLQ----YTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRK 272
Query: 114 GGADSEVFYNKFLEKLKTAYDLSKVK 139
D Y +++++ + ++V+
Sbjct: 273 NNNDFNEGYKIIIKRIRGNTNDTRVR 298
>pdb|4FVV|A Chain A, Crystal Structure Of HcrD-Sa-Gbl1C
pdb|4FVV|B Chain B, Crystal Structure Of HcrD-Sa-Gbl1C
Length = 423
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 55 EKDMDYIVNKILKLKIFENEEGKRWASSVS-DKKYEILCISQFTLYHGLKGNGLTFHHAM 113
+KD++ + N + + N W + + DK+Y ++ ++ Y KGNG+ F+
Sbjct: 217 DKDINILFNSLQ----YTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRK 272
Query: 114 GGADSEVFYNKFLEKLKTAYDLSKVK 139
D Y +++++ + ++V+
Sbjct: 273 NNNDFNEGYKIIIKRIRGNTNDTRVR 298
>pdb|3N7L|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype DC VPI
5993 Binding Domain
Length = 424
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 55 EKDMDYIVNKILKLKIFENEEGKRWASSVS-DKKYEILCISQFTLYHGLKGNGLTFHHAM 113
+KD++ + N + + N W + + DK+Y ++ ++ Y KGNG+ F+
Sbjct: 217 DKDINILFNSLQ----YTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRK 272
Query: 114 GGADSEVFYNKFLEKLKTAYDLSKVK 139
D Y +++++ + ++V+
Sbjct: 273 NNNDFNEGYKIIIKRIRGNTNDTRVR 298
>pdb|3AZW|A Chain A, Crystal Structure Of The Receptor Binding Domain
pdb|3AZW|B Chain B, Crystal Structure Of The Receptor Binding Domain
Length = 438
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 55 EKDMDYIVNKILKLKIFENEEGKRWASSVS-DKKYEILCISQFTLYHGLKGNGLTFHHAM 113
+KD++ + N + + N W + + DK+Y ++ ++ Y KGNG+ F+
Sbjct: 223 DKDINILFNSLQ----YTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRK 278
Query: 114 GGADSEVFYNKFLEKLKTAYDLSKVK 139
D Y +++++ + ++V+
Sbjct: 279 NNNDFNEGYKIIIKRIRGNTNDTRVR 304
>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
Length = 352
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 122 YNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPSEKSNTPVPDI 175
Y++ + + S VKDG FG VN + +P E P E + +PD+
Sbjct: 99 YHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAA-VMIPDM 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,936,639
Number of Sequences: 62578
Number of extensions: 243774
Number of successful extensions: 637
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 27
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)