Query psy11634
Match_columns 178
No_of_seqs 124 out of 1030
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 23:40:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00120 D-tyrosyl-tRNA(Tyr) d 100.0 1.4E-69 3.1E-74 436.9 18.6 150 18-167 1-151 (154)
2 PRK05273 D-tyrosyl-tRNA(Tyr) d 100.0 1.5E-69 3.3E-74 434.0 17.9 145 18-165 1-147 (147)
3 TIGR00256 D-tyrosyl-tRNA(Tyr) 100.0 2.7E-69 5.8E-74 431.8 17.7 143 18-163 1-145 (145)
4 COG1490 Dtd D-Tyr-tRNAtyr deac 100.0 7.3E-69 1.6E-73 426.0 15.5 143 18-163 1-145 (145)
5 cd00563 Dtyr_deacylase D-Tyros 100.0 1.7E-68 3.6E-73 427.1 17.5 143 18-163 1-145 (145)
6 PF02580 Tyr_Deacylase: D-Tyr- 100.0 1.9E-67 4.2E-72 420.8 16.4 143 19-163 2-145 (145)
7 KOG3323|consensus 100.0 7.7E-67 1.7E-71 414.4 10.6 148 18-165 1-149 (149)
8 PF08915 tRNA-Thr_ED: Archaea- 60.1 64 0.0014 26.1 7.7 95 36-155 31-128 (138)
9 COG4281 ACB Acyl-CoA-binding p 42.0 39 0.00085 25.3 3.5 21 113-133 65-85 (87)
10 PF02184 HAT: HAT (Half-A-TPR) 39.7 24 0.00051 21.9 1.7 14 115-128 3-16 (32)
11 TIGR00310 ZPR1_znf ZPR1 zinc f 39.4 42 0.00091 28.2 3.8 34 112-164 117-150 (192)
12 PF01076 Mob_Pre: Plasmid reco 36.8 33 0.00072 28.2 2.8 34 105-138 87-120 (196)
13 PF14836 Ubiquitin_3: Ubiquiti 34.9 59 0.0013 24.4 3.5 50 44-98 15-64 (88)
14 PF11141 DUF2914: Protein of u 34.6 26 0.00055 24.4 1.5 33 65-98 33-65 (66)
15 cd00435 ACBP Acyl CoA binding 34.3 60 0.0013 23.6 3.5 34 100-133 37-84 (85)
16 PF11898 DUF3418: Domain of un 30.1 49 0.0011 32.2 3.1 37 87-124 3-41 (586)
17 TIGR00340 zpr1_rel ZPR1-relate 30.0 83 0.0018 25.8 4.0 32 116-165 117-148 (163)
18 PF00887 ACBP: Acyl CoA bindin 28.1 35 0.00075 24.5 1.3 33 100-132 39-85 (87)
19 cd03063 TRX_Fd_FDH_beta TRX-li 27.0 85 0.0018 23.4 3.3 31 116-146 14-45 (92)
20 COG4013 Uncharacterized protei 26.4 1.2E+02 0.0026 23.0 3.9 45 23-68 28-75 (91)
21 PRK15245 type III effector pho 26.1 48 0.001 29.1 2.0 96 56-157 112-210 (241)
22 PRK02315 adaptor protein; Prov 24.3 94 0.002 26.6 3.5 33 114-162 33-65 (233)
23 COG0447 MenB Dihydroxynaphthoi 23.5 69 0.0015 28.5 2.5 39 104-142 34-72 (282)
24 PF06983 3-dmu-9_3-mt: 3-demet 23.3 2.9E+02 0.0062 20.8 5.7 42 23-67 45-94 (116)
25 COG3608 Predicted deacylase [G 22.9 1.8E+02 0.0039 26.7 5.2 50 81-130 75-134 (331)
26 PF01505 Vault: Major Vault Pr 22.0 51 0.0011 21.0 1.1 11 6-16 32-42 (43)
27 PTZ00458 acyl CoA binding prot 22.0 1.4E+02 0.0031 22.1 3.7 23 111-133 64-86 (90)
28 PF09807 DUF2348: Uncharacteri 21.4 5.3E+02 0.011 22.2 8.4 76 41-130 46-129 (249)
29 PRK03991 threonyl-tRNA synthet 21.3 6.8E+02 0.015 24.6 9.0 95 35-155 30-128 (613)
30 PRK02899 adaptor protein; Prov 20.9 1.4E+02 0.0029 25.1 3.7 32 114-161 33-64 (197)
31 smart00709 Zpr1 Duplicated dom 20.8 1.8E+02 0.004 23.6 4.4 32 116-165 122-153 (160)
32 smart00127 IL7 Interleukin-7 a 20.8 27 0.00058 28.4 -0.5 51 52-109 46-101 (146)
33 COG4775 Outer membrane protein 20.7 3.2E+02 0.007 27.7 6.8 108 45-164 44-167 (766)
34 COG0505 CarA Carbamoylphosphat 20.4 87 0.0019 29.2 2.6 54 79-132 281-365 (368)
35 PRK13141 hisH imidazole glycer 20.1 92 0.002 25.3 2.5 24 108-131 181-204 (205)
No 1
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=100.00 E-value=1.4e-69 Score=436.93 Aligned_cols=150 Identities=47% Similarity=0.769 Sum_probs=142.6
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|||+.+++|++|||+||||+++||+++++|||+||++||||+|++||+||+||+|++|||||||||
T Consensus 1 Mr~viQRV~~AsV~V~~~~v~~I~~GllvlvGi~~~Dt~~~~~~l~~Kil~lRiF~de~gk~~n~Sv~d~~geiL~VSQF 80 (154)
T PTZ00120 1 MRVVIQRVLSASVTVEGEVVGSIGKGLVLLVGIHEEDTWEDADYIIRKCLKLRLWPDEGGKMWDRSVKDKDYEVLVVSQF 80 (154)
T ss_pred CEEEEEEeCeEEEEECCEEEEEECCceEEEEEEcCCCCHHHHHHHHHHHhheecccCCCCCcccCCHhhcCCCEEEEEcc
Confidence 45 88999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cccccCcCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCCCC
Q psy11634 97 TLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPSEK 167 (178)
Q Consensus 97 TL~g~~KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~~~ 167 (178)
|||...||||||||.||+|++|++||++|+++|++++...+|++|+|||||+|+|+|||||||+|||++..
T Consensus 81 TL~~~~KG~RPsF~~aa~~~~A~~Ly~~f~~~l~~~~~~~~V~~G~FGa~M~V~l~NdGPvTi~lds~~~~ 151 (154)
T PTZ00120 81 TLFNVKKGNKPDFHLAMSPEDALPLYNKFVEKFKKEYAPEKIKTGKFGQYMNVSLVNDGPVTIILDSKEKN 151 (154)
T ss_pred ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCCccEECcCCCCcEEEEEECCCEEEEEEcCccc
Confidence 99933499999999999999999999999999998875468999999999999999999999999998644
No 2
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=100.00 E-value=1.5e-69 Score=433.99 Aligned_cols=145 Identities=43% Similarity=0.699 Sum_probs=140.2
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|||+++++||+|||+||||+++||+++++|||+||++||||+|++|| ||+||+|++||||+||||
T Consensus 1 Mr~viQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~~~~~~~~Kil~lRif~d~~gk-~~~Sv~d~~geiL~VsQF 79 (147)
T PRK05273 1 MRAVIQRVSEASVTVDGEVVGEIGKGLLVLVGVEKGDTEEDADYLAEKILNLRIFEDEEGK-MNLSVQDVGGEILVVSQF 79 (147)
T ss_pred CEEEEEEeceEEEEECCEEEEEECCceEEEEEEcCCCCHHHHHHHHHHHhheEcccCCCCC-cccCHHHCCCCEEEEEcc
Confidence 45 8899999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCC
Q psy11634 97 TLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPS 165 (178)
Q Consensus 97 TL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~ 165 (178)
||||++ ||||||||.||+|+.|++||++|+++||+.+ .+|++|+|||||+|+|+|||||||+|||++
T Consensus 80 TL~a~~~KG~rP~F~~a~~~~~A~~ly~~f~~~l~~~~--~~V~~G~FGa~M~V~l~NDGPvTi~ld~~~ 147 (147)
T PRK05273 80 TLYADTRKGRRPSFSAAAPPEEAEPLYDYFVEALRAQG--VPVETGRFGADMQVSLVNDGPVTFLLDSKK 147 (147)
T ss_pred cccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHcC--CceeecccCCCcEEEEEECCCEEEEEecCC
Confidence 999997 9999999999999999999999999999875 589999999999999999999999999964
No 3
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=100.00 E-value=2.7e-69 Score=431.75 Aligned_cols=143 Identities=34% Similarity=0.546 Sum_probs=138.4
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|||+++++|++|||+||||+++||+++++|||+||++||||+|++|| ||+||+|++||||+||||
T Consensus 1 Mr~viQRV~~AsV~V~~~~v~~I~~GllvlvGi~~~Dt~~~~~~~~~Kil~lRif~de~gk-~~~Sv~d~~geiL~VSQF 79 (145)
T TIGR00256 1 MIALIQRVSQASVTVEGEVIGEIGAGLLVLLGVEKDDDEQKADKLAEKVLNYRIFSDSEGK-MNLNVQQAGGEILSVSQF 79 (145)
T ss_pred CEEEEEEeCeEEEEECCEEEEEECCcEEEEEEecCCCCHHHHHHHHHHHhheEeccCCCCC-ccCCHHHCCCCEEEEECC
Confidence 45 8899999999999999999999999999999999999999999999999999999886 999999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeC
Q psy11634 97 TLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLES 163 (178)
Q Consensus 97 TL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds 163 (178)
||||++ ||||||||.||+|++|++||++|+++|++.+ .+|++|+|||||+|+|+|||||||+|||
T Consensus 80 TL~a~~~KG~rPsF~~a~~~~~A~~ly~~fv~~l~~~~--~~V~~G~FGa~M~V~l~NdGPvTi~ld~ 145 (145)
T TIGR00256 80 TLAADTKKGMRPSFSKGASPDRAEELYEYFVELCREKG--MKVQTGRFAADMQVSLTNDGPVTFWLDV 145 (145)
T ss_pred cccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CCceECccCCCcEEEEEECCCEEEEEeC
Confidence 999998 9999999999999999999999999999864 6899999999999999999999999996
No 4
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-69 Score=425.95 Aligned_cols=143 Identities=46% Similarity=0.719 Sum_probs=138.5
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|+ +||||++|+|+|||+++++|++|||+||||+++||+++++||++||++||||+|++|| ||+||+|++|+||+||||
T Consensus 1 MkaviQRV~~AsV~Vdgeivg~I~~GllvLvGV~~~Dt~~~a~~l~~Ki~~lRiF~D~~gK-mN~sv~di~G~iL~VSQF 79 (145)
T COG1490 1 MKAVIQRVSSASVSVDGEVVGAIGQGLLVLVGVTHDDTEEDADYLAEKILNLRIFEDEEGK-MNLSVQDVGGEILVVSQF 79 (145)
T ss_pred CeeeeeeeeeeEEEECCEEeeecCCcEEEEEeecCCCCHHHHHHHHHHHhceEeecCcccc-cccCHHHcCCcEEEEEEE
Confidence 45 7899999999999999999999999999999999999999999999999999999887 899999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeC
Q psy11634 97 TLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLES 163 (178)
Q Consensus 97 TL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds 163 (178)
||||++ |||||||+.|++|++|++||++|++.||+.+ .+|++|+|||||+|+|+|||||||+|||
T Consensus 80 TL~adt~kG~RPsFs~aa~p~~A~~lYe~f~~~lr~~~--~~V~tG~FgA~M~V~LvNdGPVTi~lds 145 (145)
T COG1490 80 TLYADTKKGRRPSFSKAAKPDQAEELYEYFVELLRELG--IKVETGRFGADMQVSLVNDGPVTILLDS 145 (145)
T ss_pred EEeecccCCCCCCccccCChHHHHHHHHHHHHHHHhcC--CcceeeeeeceeEEEEecCCCeEEEEeC
Confidence 999986 9999999999999999999999999999875 6899999999999999999999999996
No 5
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=100.00 E-value=1.7e-68 Score=427.14 Aligned_cols=143 Identities=45% Similarity=0.703 Sum_probs=138.6
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|+|+++++||+|||+||||+++||+++++|||+|||+||||+|++|| ||+||+|++||||+||||
T Consensus 1 Mr~viQRV~~A~V~V~~~~v~~Ig~GllvlvGi~~~Dt~~~~~~~~~Kll~lRif~d~~gk-~~~Sv~d~~gevL~VsQF 79 (145)
T cd00563 1 MRAVIQRVSEASVTVDGEVVGAIGQGLLVLVGVTHDDTEEDAEYLARKILNLRIFEDEEGK-MNLSVKDVNGEILVVSQF 79 (145)
T ss_pred CEEEEEEeceEEEEECCEEEEEECCcEEEEEEecCCCCHHHHHHHHHHHhheEcccCCCCC-cccChhhcCCCEEEEEcc
Confidence 45 8899999999999999999999999999999999999999999999999999999887 889999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeC
Q psy11634 97 TLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLES 163 (178)
Q Consensus 97 TL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds 163 (178)
||||++ ||||||||.||+|++|++||++|+++|++.+ .+|++|+|||||+|+|+|||||||+|||
T Consensus 80 TL~~~~~KG~rP~F~~a~~~e~A~~ly~~fv~~l~~~~--~~V~~G~FGa~M~V~l~NDGPvTi~ld~ 145 (145)
T cd00563 80 TLYADTKKGRRPSFSAAAPPDKAEPLYESFVELLREKG--IKVETGVFGAMMQVSLVNDGPVTIILDS 145 (145)
T ss_pred ccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHcC--CcceeCccCCCcEEEEEECCCEEEEEeC
Confidence 999998 9999999999999999999999999999876 5899999999999999999999999996
No 6
>PF02580 Tyr_Deacylase: D-Tyr-tRNA(Tyr) deacylase; InterPro: IPR003732 This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterisation with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0019478 D-amino acid catabolic process, 0005737 cytoplasm; PDB: 3LMU_F 3LMT_B 3KNF_B 3KOC_C 3KNP_D 3KO9_F 3KO3_B 3KO5_C 3KOB_D 3LMV_E ....
Probab=100.00 E-value=1.9e-67 Score=420.82 Aligned_cols=143 Identities=50% Similarity=0.804 Sum_probs=130.5
Q ss_pred eeEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecccc
Q psy11634 19 KQLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQFTL 98 (178)
Q Consensus 19 ~~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQFTL 98 (178)
.+||||++|+|+|||+++++||+|||+||||+++||+++++|||+||++||||+|++|| ||+||+|++||||+||||||
T Consensus 2 ~ViQRV~~A~V~V~~~~~~~Ig~Glvvlvgi~~~Dt~~~~~~~~~Kil~lRif~d~~gk-~~~Sv~d~~geiL~VsQFTL 80 (145)
T PF02580_consen 2 AVIQRVSSASVTVDGEVVSSIGRGLVVLVGIGKGDTEEDVDKMARKILNLRIFEDENGK-WNLSVKDVGGEILLVSQFTL 80 (145)
T ss_dssp EEEEEEEEEEEEETTEEEEEESSEEEEEEEEBTT--HHHHHHHHHHHHHSEEEEETTSS-EEEETTTTT-EEEEEE-GGG
T ss_pred EEEEEeCeEEEEECCEEEEEECCCcEEEEEEECCCCHHHHHHHHHhhceEEECcCcCCc-cceeHhhcccceEEEEeeee
Confidence 58999999999999999999999999999999999999999999999999999999887 99999999999999999999
Q ss_pred cccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeC
Q psy11634 99 YHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLES 163 (178)
Q Consensus 99 ~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds 163 (178)
||++ ||||||||+||+|++|++||++|+++||+.|. .+|++|+|||+|+|+|+|||||||+|||
T Consensus 81 ~g~~~kG~rp~f~~a~~~~~a~~ly~~f~~~l~~~~~-~~V~~G~FGa~M~V~l~NdGPvTi~lds 145 (145)
T PF02580_consen 81 YGDTKKGNRPSFHNAAPPEEAEELYERFVEKLREEYK-PKVKTGVFGADMQVSLVNDGPVTIILDS 145 (145)
T ss_dssp GSBCSSSSSEBGTTB--HHHHHHHHHHHHHHHHHHST-SCEEE--TTS-EEEEEEEEEEEEEEEEC
T ss_pred eeeccCCCCccccccCCHHHHHHHHHHHHHHHHHhCC-CceeECccCCeeEEEEEeCCCEEEEEeC
Confidence 9998 99999999999999999999999999999985 5999999999999999999999999997
No 7
>KOG3323|consensus
Probab=100.00 E-value=7.7e-67 Score=414.38 Aligned_cols=148 Identities=55% Similarity=0.895 Sum_probs=144.9
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|+++.|++||+|||+||||+++||+++++||++||||||+||||+|+.|.+||.|.+|||||||||
T Consensus 1 mkavlQrv~~AsvtV~~~~vs~I~~Gl~vlvgi~~~dt~ed~~kmvrkiLnlrlfe~es~k~w~ksv~dl~~eiL~VsQf 80 (149)
T KOG3323|consen 1 MKAVLQRVLRASVTVDDEQVSEIGRGLCVLVGISKDDTEEDLEKMVRKILNLRLFEDESGKGWKKSVMDLNGEILCVSQF 80 (149)
T ss_pred ChHHHHHhhhheEEEcceeeeeecCceEEEEEEccCCCHHHHHHHHHHHhheeeccccccCcccchhhhCCCCEEEEEee
Confidence 44 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCC
Q psy11634 97 TLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPS 165 (178)
Q Consensus 97 TL~g~~KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~ 165 (178)
||||++|||+||||.||++++|.+||++|++.|++.|++++|++|+|||||+|+++|||||||++||++
T Consensus 81 TL~~rlKG~kpdfH~am~~~ea~elY~qfl~~l~k~~~~~~ikdG~fGamm~v~l~n~GPvTi~~es~~ 149 (149)
T KOG3323|consen 81 TLYGRLKGNKPDFHLAMKGEEAKELYNQFLELLRKAYGADKIKDGKFGAMMQVHLVNDGPVTILLESPE 149 (149)
T ss_pred eeeeeecCCCcchhhhcCchhhHHHHHHHHHHHHHHhCchhhhccccceEEEEEEecCCCeEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999974
No 8
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=60.15 E-value=64 Score=26.13 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=60.1
Q ss_pred EEEECCeEEEEEecccCCCHH---HHHHHHHHHhceeecccCCCccccccccccCCeeeeeecccccccCcCCCCCCCCC
Q psy11634 36 ISSIGMGLCILIGISRHDTEK---DMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQFTLYHGLKGNGLTFHHA 112 (178)
Q Consensus 36 v~~Ig~GllvlvGi~~~Dt~~---d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQFTL~g~~KG~rPsF~~A 112 (178)
-++...-|++|+.|+++|.++ .+++.++-|..+ + +| ++. -.|++=|=.-|. ++-
T Consensus 31 ~~~~e~alVvF~~VE~~De~~~~~vv~~av~eI~~~--a----~k-v~~------~~ivlyPyAHLS----------s~L 87 (138)
T PF08915_consen 31 EGRMENALVVFIAVEKGDEENPEGVVEKAVEEIKWV--A----KK-VKA------KRIVLYPYAHLS----------SSL 87 (138)
T ss_dssp EEEEEEEEEEEEE-BGGGGG-HHHHHHHHHHHHHHH--H----HH-TT-------SEEEEEE-GGGS----------SSB
T ss_pred ccceeeeEEEEEEEcCCCCCCHHHHHHHHHHHHHHH--H----Hh-cCC------CEEEEeCccccc----------CCc
Confidence 466778899999999999887 677776665542 0 11 111 124444544442 234
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCC
Q psy11634 113 MGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDG 155 (178)
Q Consensus 113 ~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDG 155 (178)
++|+.|.++.+..-+.|++. +..|..=-||=+=...|..-|
T Consensus 88 a~P~~A~~iL~~le~~L~~~--g~eV~raPFGwyK~F~i~ckG 128 (138)
T PF08915_consen 88 ASPDVAVEILKKLEERLKSR--GFEVYRAPFGWYKEFEISCKG 128 (138)
T ss_dssp --HHHHHHHHHHHHHHHHHT--T-EEEE--TTEEEEEEEEE-S
T ss_pred CChHHHHHHHHHHHHHHHhC--CCeEEEeCCccceeEEEEecC
Confidence 68999999999999999764 467999999988888777665
No 9
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=42.02 E-value=39 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.2
Q ss_pred CCChhHHHHHHHHHHHHHhcC
Q psy11634 113 MGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 113 ~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
.+.|.|++=|-.||++|+..|
T Consensus 65 ksqedA~qeYialVeeLkak~ 85 (87)
T COG4281 65 KSQEDARQEYIALVEELKAKY 85 (87)
T ss_pred ccHHHHHHHHHHHHHHHHhhc
Confidence 467899999999999999765
No 10
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.67 E-value=24 Score=21.91 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHHH
Q psy11634 115 GADSEVFYNKFLEK 128 (178)
Q Consensus 115 p~~A~~LY~~Fv~~ 128 (178)
-+.|+.+|++|+..
T Consensus 3 ~dRAR~IyeR~v~~ 16 (32)
T PF02184_consen 3 FDRARSIYERFVLV 16 (32)
T ss_pred HHHHHHHHHHHHHh
Confidence 47899999999964
No 11
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=39.36 E-value=42 Score=28.23 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCC
Q psy11634 112 AMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESP 164 (178)
Q Consensus 112 A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~ 164 (178)
+..++.+ .-.+.|+++|++. ..| ..|||++||-+
T Consensus 117 ~~~~e~~-~k~~~~i~kL~~~------~~g------------~~pfTlIidDP 150 (192)
T TIGR00310 117 SEDEETK-KRAEEILERLKEA------IEG------------KEKFTVILEDP 150 (192)
T ss_pred ccCHHHH-HHHHHHHHHHHHH------HhC------------CCCEEEEEECC
Confidence 4555544 5569999999874 334 55999999954
No 12
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=36.84 E-value=33 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=28.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCce
Q psy11634 105 NGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKV 138 (178)
Q Consensus 105 ~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~V 138 (178)
..|+|-..++++++++.|+.+++.|.+.|+...|
T Consensus 87 ~~~e~~~~~~~e~~~~~~~~~~~~~~~r~g~~ni 120 (196)
T PF01076_consen 87 ASPEFFNDLDPEQQKRWFEDSLEWLQERYGNENI 120 (196)
T ss_pred CChHHhcchhhHHHHHHHHHHHHHHHHHCCchhE
Confidence 4788888899999999999999999987763333
No 13
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=34.88 E-value=59 Score=24.37 Aligned_cols=50 Identities=22% Similarity=0.404 Sum_probs=34.9
Q ss_pred EEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecccc
Q psy11634 44 CILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQFTL 98 (178)
Q Consensus 44 lvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQFTL 98 (178)
++-..|++.||-+.++.-++|++++ +.| =+.|+++ .+-..|.|.=+.-||
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i---~~E-~RLW~~~-~~~~~e~L~~~~~Tv 64 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI---QEE-TRLWNKY-SENSYELLNNPEITV 64 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT----TS--EEEEEEC-TTTCEEEE--TTSBT
T ss_pred HhHhhccccChHHHHHHHHHHHhCC---Ccc-ceehhcc-CCcchhhhCCCCccH
Confidence 5567899999999999999999987 433 4667777 444677777666666
No 14
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=34.62 E-value=26 Score=24.44 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=26.3
Q ss_pred HhceeecccCCCccccccccccCCeeeeeecccc
Q psy11634 65 ILKLKIFENEEGKRWASSVSDKKYEILCISQFTL 98 (178)
Q Consensus 65 il~LRiF~d~~gk~~~~Sv~D~~geIL~VSQFTL 98 (178)
-...+++++..|+ |...|.|-+|.+|-.-.|+.
T Consensus 33 ~S~k~~~~~~~G~-WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 33 WSSKQNFPDQPGD-WRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEeecCCCCCcC-EEEEEEcCCCCEEEEEEEEE
Confidence 3445566666776 99999999999999988874
No 15
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=34.34 E-value=60 Score=23.61 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=25.5
Q ss_pred ccCcCCCCCCC--------------CCCCChhHHHHHHHHHHHHHhcC
Q psy11634 100 HGLKGNGLTFH--------------HAMGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 100 g~~KG~rPsF~--------------~A~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
|+|...+|++. ..|++++|...|-..++++-..|
T Consensus 37 G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~~~~ 84 (85)
T cd00435 37 GDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELIAKY 84 (85)
T ss_pred CCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 55667788853 34899999999988888876543
No 16
>PF11898 DUF3418: Domain of unknown function (DUF3418); InterPro: IPR024590 This entry represents the uncharacterised C-terminal domain of HrpA.
Probab=30.07 E-value=49 Score=32.25 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCeeeeeeccccccc-C-cCCCCCCCCCCCChhHHHHHHH
Q psy11634 87 KYEILCISQFTLYHG-L-KGNGLTFHHAMGGADSEVFYNK 124 (178)
Q Consensus 87 ~geIL~VSQFTL~g~-~-KG~rPsF~~A~~p~~A~~LY~~ 124 (178)
.|.++.--|-||||= . .+||.+|. ...|++|+++|-+
T Consensus 3 ~G~V~A~ErvtLyGL~Iv~~R~V~y~-~IdP~~AReiFIR 41 (586)
T PF11898_consen 3 RGQVMAYERVTLYGLPIVARRRVHYG-RIDPAEAREIFIR 41 (586)
T ss_pred CceEEEEeeeEEcCeEEECCcccCCC-CCChHHHHHHHHH
Confidence 588899999999994 4 88999997 5788999999754
No 17
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=30.02 E-value=83 Score=25.83 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCC
Q psy11634 116 ADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPS 165 (178)
Q Consensus 116 ~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~ 165 (178)
++.++-.+.|+++|++. ..| ..|||++||-+.
T Consensus 117 ~e~~~k~~~~l~kL~~~------~~g------------~~pfTlIldDP~ 148 (163)
T TIGR00340 117 DEAVKKCEEILKRIREV------IEG------------KFKFTLIIEDPF 148 (163)
T ss_pred HHHHHHHHHHHHHHHHH------HhC------------CCCeEEEEECCC
Confidence 34456678899999864 334 669999999553
No 18
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=28.11 E-value=35 Score=24.46 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=23.4
Q ss_pred ccCcCCCCCCC--------------CCCCChhHHHHHHHHHHHHHhc
Q psy11634 100 HGLKGNGLTFH--------------HAMGGADSEVFYNKFLEKLKTA 132 (178)
Q Consensus 100 g~~KG~rPsF~--------------~A~~p~~A~~LY~~Fv~~lr~~ 132 (178)
|++...||++- ..|++++|...|-..++++-.+
T Consensus 39 Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~ 85 (87)
T PF00887_consen 39 GDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIELVEELIPK 85 (87)
T ss_dssp SS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 56678888864 3588999999998888887644
No 19
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=27.00 E-value=85 Score=23.39 Aligned_cols=31 Identities=10% Similarity=0.031 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHhcCCC-CceeeCccCce
Q psy11634 116 ADSEVFYNKFLEKLKTAYDL-SKVKDGKFGAH 146 (178)
Q Consensus 116 ~~A~~LY~~Fv~~lr~~~~~-~~Vk~G~FGa~ 146 (178)
.-|+++|+.|.++++++... .-+++|.+|-.
T Consensus 14 aGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C 45 (92)
T cd03063 14 LGADEVAEAIEAEAAARGLAATIVRNGSRGMY 45 (92)
T ss_pred hCHHHHHHHHHHHHHHcCCeEEEEEecCceec
Confidence 45889999999999875321 34678999843
No 20
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.42 E-value=1.2e+02 Score=23.00 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=31.2
Q ss_pred EeceeEEEECCEEEEEECCeEEEEEecc---cCCCHHHHHHHHHHHhce
Q psy11634 23 KHTPFVCLVDSNVISSIGMGLCILIGIS---RHDTEKDMDYIVNKILKL 68 (178)
Q Consensus 23 RV~~AsV~Vd~~~v~~Ig~GllvlvGi~---~~Dt~~d~~~~a~Kil~L 68 (178)
|.+-|.|.|-|+++- +.+|++-|+==+ ++-++-|++++++-+|.|
T Consensus 28 el~~grVhIpG~vv~-~n~g~l~l~~esdmi~Gi~~~diEki~~~llEl 75 (91)
T COG4013 28 ELYFGRVHIPGRVVH-YNDGLLRLVHESDMIYGIIEVDIEKILDDLLEL 75 (91)
T ss_pred EEEEEEEEeccEEEE-eeccEEEEEEeccccCceEEEEHHHHHHHHHHH
Confidence 567899999999865 889999886333 444555555555555554
No 21
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=26.13 E-value=48 Score=29.06 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhceeecccCCCcccccccc---ccCCeeeeeecccccccCcCCCCCCCCCCCChhHHHHHHHHHHHHHhc
Q psy11634 56 KDMDYIVNKILKLKIFENEEGKRWASSVS---DKKYEILCISQFTLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTA 132 (178)
Q Consensus 56 ~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~---D~~geIL~VSQFTL~g~~KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~ 132 (178)
+.+...-+-|..|=.-+|.+=.+|...=. +-+-.|=+=-|||||.+. +--++-=......=...|++.|.+.
T Consensus 112 ~qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~qqsRV~~GAQfTLYvKp-----d~edsqYsa~~l~k~r~Fie~lE~~ 186 (241)
T PRK15245 112 DQVPQAFQALSGLLFSEDSPVDKWKVTDMERVSQQSRVGLGAQFTLYVKP-----DQENSQYSASFLHKTRQFIECLESR 186 (241)
T ss_pred HHHHHHHHHhhhhhcCCCCCcceeeeccccccCccchhcccceEEEEecC-----ccccccCCHHHHHHHHHHHHHHHHH
Confidence 44555445555553333432234653311 112334444599999753 2222222223333457788888765
Q ss_pred CCCCceeeCccCceeEEEEEeCCce
Q psy11634 133 YDLSKVKDGKFGAHMSVNIVNDGPV 157 (178)
Q Consensus 133 ~~~~~Vk~G~FGa~M~V~l~NDGPV 157 (178)
....-|..|..=+ -+|+..|+--+
T Consensus 187 L~~~gi~pG~~P~-SDV~pe~W~y~ 210 (241)
T PRK15245 187 LSENGVISGQCPE-SDVHPENWKYL 210 (241)
T ss_pred HHHcCCCCCCCCc-cccCcccccee
Confidence 5434456666543 24555554433
No 22
>PRK02315 adaptor protein; Provisional
Probab=24.26 E-value=94 Score=26.57 Aligned_cols=33 Identities=12% Similarity=0.420 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEe
Q psy11634 114 GGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLE 162 (178)
Q Consensus 114 ~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~ld 162 (178)
+.+++++||-..++++...+ ...++|||||.+-
T Consensus 33 n~~k~e~fF~~mm~Ea~~e~----------------~F~~~~pl~~qv~ 65 (233)
T PRK02315 33 NREKIEEFFYSMMDEVDEED----------------DFADEGPLWFQVT 65 (233)
T ss_pred CcHHHHHHHHHHHHHhcccc----------------CcccCCeEEEEEE
Confidence 45789999888887775433 2445677777554
No 23
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=23.52 E-value=69 Score=28.54 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCc
Q psy11634 104 GNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGK 142 (178)
Q Consensus 104 G~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~ 142 (178)
=|||.-++|-.|..-.+||+.|.+.-.+.-.+..+-||.
T Consensus 34 inRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~ 72 (282)
T COG0447 34 INRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGN 72 (282)
T ss_pred ecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecC
Confidence 499999999999999999999998877655455666653
No 24
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=23.30 E-value=2.9e+02 Score=20.79 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=29.2
Q ss_pred EeceeEEEECCEEEE--------EECCeEEEEEecccCCCHHHHHHHHHHHhc
Q psy11634 23 KHTPFVCLVDSNVIS--------SIGMGLCILIGISRHDTEKDMDYIVNKILK 67 (178)
Q Consensus 23 RV~~AsV~Vd~~~v~--------~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~ 67 (178)
+|.+|.+.++|..+- ..+.++-+.|.. |++++++++-+|+..
T Consensus 45 ~v~ha~l~i~g~~lm~~D~~~~~~~~~~~sl~i~~---~~~ee~~~~f~~Ls~ 94 (116)
T PF06983_consen 45 KVMHAELTIGGQKLMASDGGPDFPFGNNISLCIEC---DDEEEIDRIFDKLSE 94 (116)
T ss_dssp SEEEEEEEETTEEEEEEEESTS----TTEEEEEEE---SSHHHHHHHHHHHHT
T ss_pred cEEEEEEEECCeEEEEECCCCCCCCCCcEEEEEEc---CCHHHHHHHHHHHHc
Confidence 678899999887543 234565555543 688999999888874
No 25
>COG3608 Predicted deacylase [General function prediction only]
Probab=22.88 E-value=1.8e+02 Score=26.72 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=37.7
Q ss_pred ccccccCCeeeeeeccccccc------CcCCCCCCCCCCC----ChhHHHHHHHHHHHHH
Q psy11634 81 SSVSDKKYEILCISQFTLYHG------LKGNGLTFHHAMG----GADSEVFYNKFLEKLK 130 (178)
Q Consensus 81 ~Sv~D~~geIL~VSQFTL~g~------~KG~rPsF~~A~~----p~~A~~LY~~Fv~~lr 130 (178)
++-.|+.|.|.+||+....|. ..|.+++|..+-| ..-++.+.+.|...|.
T Consensus 75 L~~a~i~GtV~iVP~aN~~a~~~~~R~~p~d~~N~NR~fPg~~dgs~t~ria~~l~r~L~ 134 (331)
T COG3608 75 LDPADISGTVIIVPIANPPAFEAQGRFSPGDDTNLNRAFPGRPDGSATERIADRLKRLLL 134 (331)
T ss_pred cCHhhcCceEEEEeccCHHHHHhhcccCCCCCCcccccCCCCCCCCHHHHHHHHHHHhhh
Confidence 344579999999998877552 3789999999988 7777777777744444
No 26
>PF01505 Vault: Major Vault Protein repeat; InterPro: IPR002499 Vaults are the largest ribonucleoprotein particles known, having a mass of approximately 13 MDa. They are multi-subunit structures that may act as scaffolds for proteins involved in signal transduction and may also play a role in nucleo-cytoplasmic transport. Vaults are present in most normal tissues, but are more highly expressed in epithelial cells with secretory and excretory functions, as well as in cells chronically exposed to xenobiotics, such as bronchial cells and cells lining the intestine []. Overexpression of these proteins is linked with multidrug-resistance in cancer cells. The mammalian vault structure is highly regular and consists of approximately 96 molecules of the 100 kDa major vault protein (MVP), 2 molecules of the 240 kDa minor vault protein TEP1, 8 molecules of the 193 kDa minor vault protein VPARP and at least 6 copies of a small untranslated RNA of 88-141 bases. The MVP molecules form the core of the complex, which is a barrel-like structure with an invaginated waist and two protruding caps. The complex can unfold into two symmetrical flower-like structures with 8 petals each supposedly consisting of 6 MVP molecules []. The MVP protein is composed of two distinct domains []. The N-terminal domain contains ~8 copies of the vault repeat (or MVP repeat) in tandem. The MVP repeat is composed of ~53 amino acids and forms a structural part of the vault wall. The C-terminal part of MVP may be involved in oligomerization and be located in the vault cap, while the MVP repeats in the N-terminal part can be packed like staves in a barrel to form the vault wall. The 3D structure of the repeat forms a fold that consists of a three stranded (B) antiparallel beta-sheet in a unique topology B2-B1-B3 and two loops. MVP repeats can be interaction-mediating modules, as MVP repeats 3 and 4 bind VPARP, which is one of the other vault proteins.; PDB: 3GF5_A 3GNG_A 3GNF_B 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y 1Y7X_A.
Probab=22.02 E-value=51 Score=21.04 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=9.2
Q ss_pred eeeeCCcceee
Q psy11634 6 YSVTGPRPYVK 16 (178)
Q Consensus 6 ~~~~~~~~~~~ 16 (178)
|-++||.+|+|
T Consensus 32 WLv~gP~~YiP 42 (43)
T PF01505_consen 32 WLVTGPGTYIP 42 (43)
T ss_dssp EEEESSSEECS
T ss_pred EEEeCCeeEcC
Confidence 56899999986
No 27
>PTZ00458 acyl CoA binding protein; Provisional
Probab=21.96 E-value=1.4e+02 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=19.2
Q ss_pred CCCCChhHHHHHHHHHHHHHhcC
Q psy11634 111 HAMGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 111 ~A~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
..|++++|++.|-..++++...+
T Consensus 64 ~~ms~~eA~~~YI~l~~~l~~~w 86 (90)
T PTZ00458 64 ENLNREDAKKRYVEIVTELFPNW 86 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcc
Confidence 45999999999999998887554
No 28
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=21.43 E-value=5.3e+02 Score=22.15 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=37.6
Q ss_pred CeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc-----cccc-cC-cCCCC-CCCCC
Q psy11634 41 MGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF-----TLYH-GL-KGNGL-TFHHA 112 (178)
Q Consensus 41 ~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF-----TL~g-~~-KG~rP-sF~~A 112 (178)
..=++||++.+ +-......++|+ ++ |++-..-+|.+-.|-=. .|++ .. .+.+| .|...
T Consensus 46 ~~~V~fv~~~q--~~~HY~~v~~KL-G~-----------NL~~~~~~gql~fiD~l~~~~~~l~~~~~~~~~~~~~~l~~ 111 (249)
T PF09807_consen 46 GCKVCFVAFSQ--SFSHYNNVAQKL-GV-----------NLSAAKEKGQLVFIDGLKSSLDLLFDEDSSDEPNPLKFLRE 111 (249)
T ss_pred CCcEEEEEccC--CHHHHHHHHHhh-Ee-----------cchHhccCCcEEEeehhhhhhhhhhccccccCCcccccccc
Confidence 34566777776 455566666663 22 22222223333333211 2333 22 34443 35544
Q ss_pred CCChhHHHHHHHHHHHHH
Q psy11634 113 MGGADSEVFYNKFLEKLK 130 (178)
Q Consensus 113 ~~p~~A~~LY~~Fv~~lr 130 (178)
.....-++||+...+.++
T Consensus 112 ~~~~~L~~L~~~I~~~l~ 129 (249)
T PF09807_consen 112 DNASSLRSLYEFIQEALS 129 (249)
T ss_pred CCcchHHHHHHHHHHHHh
Confidence 445567889887666666
No 29
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=21.25 E-value=6.8e+02 Score=24.62 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=66.2
Q ss_pred EEEEECCeEEEEEecccCCC---HHHHHHHHHHHhceeecccCCCccccccccccCC-eeeeeecccccccCcCCCCCCC
Q psy11634 35 VISSIGMGLCILIGISRHDT---EKDMDYIVNKILKLKIFENEEGKRWASSVSDKKY-EILCISQFTLYHGLKGNGLTFH 110 (178)
Q Consensus 35 ~v~~Ig~GllvlvGi~~~Dt---~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~g-eIL~VSQFTL~g~~KG~rPsF~ 110 (178)
.-++...-|++|+.|+++|. +..+++.++-|.++ + +| ++- .|++=|=.-|. +
T Consensus 30 ~~~~~~~~lv~f~~ve~~d~~~~~~~~~~~~~~i~~~--~----~~--------~~~~~i~~ypyahls----------~ 85 (613)
T PRK03991 30 KSGRLEEALVVFIAVEKGDESNPEGVVEKAVEEIEKV--A----EQ--------VKAENIVLYPYAHLS----------S 85 (613)
T ss_pred ccccccceEEEEEEeccCCCCCHHHHHHHHHHHHHHH--H----Hh--------cCCCEEEEecchhcc----------C
Confidence 34577889999999999998 66788877766642 1 11 221 23333433332 2
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCC
Q psy11634 111 HAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDG 155 (178)
Q Consensus 111 ~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDG 155 (178)
+-++|+.|.++-...-+.|++. +..|..=-||=+=..++..-|
T Consensus 86 ~l~~p~~a~~~l~~~~~~l~~~--~~~v~~apfg~~k~f~~~~~g 128 (613)
T PRK03991 86 DLASPKTAVEVLKKLEEELKSE--GYEVLRAPFGWYKAFKISCKG 128 (613)
T ss_pred ccCChHHHHHHHHHHHHHHhhC--CceEEEeccccceeEEEEecC
Confidence 3478999999999998888543 467999999988877777665
No 30
>PRK02899 adaptor protein; Provisional
Probab=20.90 E-value=1.4e+02 Score=25.06 Aligned_cols=32 Identities=9% Similarity=0.419 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEE
Q psy11634 114 GGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPL 161 (178)
Q Consensus 114 ~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~l 161 (178)
..+++++||...+++....++ ..++||+||.+
T Consensus 33 n~~k~e~lF~~mm~Ea~~e~~----------------F~~~~pl~~qv 64 (197)
T PRK02899 33 DAPKVHQLFRDMMQEANKELG----------------FEADGPIAVEV 64 (197)
T ss_pred CcHHHHHHHHHHHHHhhhccC----------------cccCCeEEEEE
Confidence 457999998888887765431 34457777766
No 31
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=20.77 E-value=1.8e+02 Score=23.62 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCC
Q psy11634 116 ADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPS 165 (178)
Q Consensus 116 ~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~ 165 (178)
++.++=.+.|+++|++. ..| .-|||++||-+.
T Consensus 122 ~e~~~k~~~~~~~L~~~------~~g------------~~~fTliidDP~ 153 (160)
T smart00709 122 PETKEKIDEFLEKLKEL------IEG------------KEPFTLILDDPA 153 (160)
T ss_pred HHHHHHHHHHHHHHHHH------HcC------------CCCEEEEEECCC
Confidence 34445568889888863 334 569999999654
No 32
>smart00127 IL7 Interleukin-7 and interleukin-9 family. IL-7 is a cytokine that acts as a growth factor for early lymphoid cells of both B- and T-cell lineages. IL-9 is a multifunctional cytokine that, although originally described as a T-cell growth factor, its function in T-cell response remains unclear.
Probab=20.77 E-value=27 Score=28.39 Aligned_cols=51 Identities=25% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecccccc---c--CcCCCCCC
Q psy11634 52 HDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQFTLYH---G--LKGNGLTF 109 (178)
Q Consensus 52 ~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQFTL~g---~--~KG~rPsF 109 (178)
+||.| +..+-+-.-+||-|- | ||-| .|.+-.++.|||=||-= + .|||+|-=
T Consensus 46 dd~kE-~~fl~rAarkLrqF~----K-mnis-~eF~~hl~~VS~GTl~llnCt~k~kgrkp~~ 101 (146)
T smart00127 46 DDNKE-AAFLNRAARKLRQFL----K-MNIS-EDFNLHLLTVSQGTQTLLNCTSKGKGRKPPS 101 (146)
T ss_pred CccHH-HHHHHHHHHHHHHHH----H-hhhh-HHHHHHHHHhccCceeeeeecccccCCCCCc
Confidence 35544 444444455677773 2 4555 67888899999998843 2 37887754
No 33
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=20.68 E-value=3.2e+02 Score=27.67 Aligned_cols=108 Identities=14% Similarity=0.180 Sum_probs=63.0
Q ss_pred EEEecccCC--CHHHHHHHHHHHhceeecccCCCccccccccccCCeeee--------eecccccccCcCCCCCCCCCCC
Q psy11634 45 ILIGISRHD--TEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILC--------ISQFTLYHGLKGNGLTFHHAMG 114 (178)
Q Consensus 45 vlvGi~~~D--t~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~--------VSQFTL~g~~KG~rPsF~~A~~ 114 (178)
-++.+..++ +.++++...+++.+...|+|- .+. ..|..|+ |+|-+.-|..+=.....-....
T Consensus 44 ~~l~~~~G~~~s~~~i~~~ik~L~~tg~F~~v-------~~~-~~~~~Lvv~V~e~p~I~~v~~~Gn~~i~~~~L~~~l~ 115 (766)
T COG4775 44 SYLPVRVGDTVSDEDIDEAIKALYATGYFEDV-------RVE-REGGTLVVTVKERPVINSVVFSGNKSIKDDALKKNLK 115 (766)
T ss_pred hhcCcccCccccHHHHHHHHHHHHhcCCCcce-------EEE-EcCCEEEEEEecCCcEEEEEEeCCccCChHHHHHhhc
Confidence 345666666 478999999999999999883 111 1113333 3333333321101111111111
Q ss_pred C----hhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEe--CCceEEEEeCC
Q psy11634 115 G----ADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVN--DGPVTIPLESP 164 (178)
Q Consensus 115 p----~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~N--DGPVTi~lds~ 164 (178)
- -.-+...++..+.+++.|. ..|.|.+......++ +|+|.+.+...
T Consensus 116 ~~~g~~~~~~~l~~~~~~l~e~Y~----~~G~~~~~v~~~~~~~~~~~v~v~f~i~ 167 (766)
T COG4775 116 IKPGEVLNRAKLEADVEALKEAYL----SRGYYSVKVTYKVTPLPRNRVDVVFVIN 167 (766)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHH----hcCeecceeEEEEEECCCCeEEEEEEeC
Confidence 1 1123455777889998884 679999999765543 67988888865
No 34
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=20.42 E-value=87 Score=29.24 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=37.9
Q ss_pred cccccccc-CCeeeeeecccccc---c-C--------------------cCCCC----CCC--CCCCChhHHHHHHHHHH
Q psy11634 79 WASSVSDK-KYEILCISQFTLYH---G-L--------------------KGNGL----TFH--HAMGGADSEVFYNKFLE 127 (178)
Q Consensus 79 ~~~Sv~D~-~geIL~VSQFTL~g---~-~--------------------KG~rP----sF~--~A~~p~~A~~LY~~Fv~ 127 (178)
-|.-|+|. .|.+-+.||=-=|| + . ...+| ||| .+-.|.+++-||++|++
T Consensus 281 ~NhPV~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~ 360 (368)
T COG0505 281 ANHPVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIE 360 (368)
T ss_pred CCcCcccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCCCCCcccHHHHHHHHH
Confidence 37788888 58888888833222 1 1 12344 667 44678899999999999
Q ss_pred HHHhc
Q psy11634 128 KLKTA 132 (178)
Q Consensus 128 ~lr~~ 132 (178)
.++..
T Consensus 361 ~~~~~ 365 (368)
T COG0505 361 LMEAA 365 (368)
T ss_pred HHHHh
Confidence 99864
No 35
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.13 E-value=92 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHh
Q psy11634 108 TFHHAMGGADSEVFYNKFLEKLKT 131 (178)
Q Consensus 108 sF~~A~~p~~A~~LY~~Fv~~lr~ 131 (178)
|||.-+..+..++|++.|++.+++
T Consensus 181 QfHPE~~~~~g~~l~~~fl~~~~~ 204 (205)
T PRK13141 181 QFHPEKSGDVGLKILKNFVEMVEE 204 (205)
T ss_pred eCCCccchHHHHHHHHHHHHHhhc
Confidence 888777777899999999988863
Done!