Query psy11634
Match_columns 178
No_of_seqs 124 out of 1030
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 23:40:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dbo_A D-tyrosyl-tRNA(Tyr) dea 100.0 1.2E-70 4.1E-75 439.5 17.7 145 18-165 1-147 (148)
2 1jke_A O145, D-Tyr-trnaTyr dea 100.0 1.4E-70 4.9E-75 437.8 17.9 143 18-163 1-145 (145)
3 1j7g_A D-tyrosyl-tRNA(Tyr) dea 100.0 2.1E-70 7.3E-75 436.4 17.4 142 18-163 1-144 (144)
4 2okv_A Probable D-tyrosyl-tRNA 100.0 5.2E-70 1.8E-74 455.4 17.6 151 18-168 1-152 (209)
5 3ko5_A D-tyrosyl-tRNA(Tyr) dea 100.0 9.7E-70 3.3E-74 440.5 16.4 150 18-168 1-162 (164)
6 1tc5_A Probable eukaryotic D-a 100.0 2.3E-63 7.9E-68 411.1 15.0 149 14-163 8-194 (194)
7 2hl0_A Threonyl-tRNA synthetas 65.1 45 0.0015 26.0 8.8 94 36-155 32-129 (143)
8 2lbb_A Acyl COA binding protei 63.2 6.4 0.00022 28.7 3.4 38 95-133 43-94 (96)
9 3epy_A Acyl-COA-binding domain 62.3 4.8 0.00016 28.8 2.5 38 95-133 36-87 (89)
10 1hbk_A ACBP, acyl-COA binding 53.5 10 0.00034 26.9 3.0 38 95-133 36-87 (89)
11 3bid_A UPF0339 protein NMB1088 47.2 9.4 0.00032 25.8 1.9 27 68-95 3-29 (64)
12 2gia_B MRP1, mitochondrial RNA 45.4 9 0.00031 30.7 1.8 69 85-157 31-107 (187)
13 2cb8_A Acyl-COA-binding protei 39.8 23 0.0008 24.9 3.1 38 95-133 34-85 (87)
14 2cqu_A Peroxisomal D3,D2-enoyl 39.5 32 0.0011 25.7 3.9 71 53-134 15-100 (116)
15 3if8_A Hzwilch, protein zwilch 38.0 31 0.0011 30.3 4.2 39 117-155 13-51 (339)
16 2cop_A Acyl-coenzyme A binding 36.3 24 0.00081 26.0 2.7 39 95-134 40-92 (109)
17 1st7_A ACBP, acyl-COA-binding 35.2 22 0.00076 24.9 2.4 38 95-133 33-84 (86)
18 2yma_A YOS9P, protein OS-9 hom 34.4 26 0.0009 28.0 2.9 59 41-99 34-107 (161)
19 3flv_A Acyl-COA-binding domain 33.6 33 0.0011 25.8 3.2 39 95-134 60-112 (119)
20 3fp5_A Acyl-COA binding protei 30.6 35 0.0012 25.0 2.9 37 95-132 40-90 (106)
21 2g5x_A Lychnin, ribosome-inact 29.1 40 0.0014 27.8 3.3 56 106-165 1-67 (234)
22 2k7i_A UPF0339 protein ATU0232 25.0 27 0.00093 24.8 1.3 27 68-95 25-51 (83)
23 3ofh_A LDLR chaperone MESD; mo 23.1 87 0.003 22.6 3.7 35 37-72 5-39 (89)
24 1dm0_A Shiga toxin A subunit; 22.7 1.1E+02 0.0037 25.9 4.9 45 120-165 11-75 (287)
25 2dcl_A Hypothetical UPF0166 pr 22.3 49 0.0017 24.9 2.4 46 117-162 23-77 (127)
26 3bo6_A Hydrophilic protein, VI 21.8 40 0.0014 28.0 1.9 81 56-143 91-176 (220)
27 2p1w_A 27.5 kDa virulence prot 21.4 42 0.0014 28.4 1.9 82 56-143 121-206 (250)
28 2ywj_A Glutamine amidotransfer 21.1 46 0.0016 25.0 2.0 24 107-131 162-185 (186)
29 1o51_A Hypothetical protein TM 20.2 77 0.0026 23.2 3.0 46 117-162 27-81 (114)
No 1
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=100.00 E-value=1.2e-70 Score=439.50 Aligned_cols=145 Identities=43% Similarity=0.638 Sum_probs=139.7
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|||+++++|++|||+||||+++||+++++|||+||++||||+|++|| ||+||+|++||||+||||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Kil~lRif~De~gk-mn~Sv~d~~g~iL~VSQF 79 (148)
T 2dbo_A 1 MRAVIQRVKKSWVEVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERGK-FQYSVLDIKGEILVVSQF 79 (148)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCBCCSSCS-SCBCTTTTTCEEEEEECG
T ss_pred CEEEEEEECeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhcEEeccCCCCC-cccCHHHcCCCEEEEEee
Confidence 45 8899999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCC
Q psy11634 97 TLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPS 165 (178)
Q Consensus 97 TL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~ 165 (178)
||||++ ||||||||.||+|++|++||++|+++|++.+ .+|++|+|||||+|+|+|||||||+|||++
T Consensus 80 TL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~g--~~V~tG~FGA~M~V~l~NDGPVTi~lds~~ 147 (148)
T 2dbo_A 80 TLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESG--LKVETGIFGAMMDVFIENWGPVTIIIDSRE 147 (148)
T ss_dssp GGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHTTC--SCEEECCSSSCCEEEEEEEEEEEEEEEGGG
T ss_pred ecccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CcceECccCCCcEEEEEECCCEEEEEECCC
Confidence 999987 9999999999999999999999999999863 589999999999999999999999999864
No 2
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=100.00 E-value=1.4e-70 Score=437.84 Aligned_cols=143 Identities=30% Similarity=0.528 Sum_probs=138.6
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|||+++++|++|||+||||+++||+++++|||+||++||||+|++|| ||+||+|++||||+||||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Ki~~lRif~de~gk-mn~Sv~d~~g~iL~VSQF 79 (145)
T 1jke_A 1 MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGK-MNLNVQQAGGSVLVVSQF 79 (145)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEECTTSC-EEECTTTTTCEEEEEECG
T ss_pred CEEEEEEECeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCCCCC-ccCCHHHcCCCEEEEEcc
Confidence 45 8899999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeC
Q psy11634 97 TLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLES 163 (178)
Q Consensus 97 TL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds 163 (178)
||||++ ||||||||.||+|++|++||++|+++|++.+ .+|++|+|||||+|+|+|||||||+|||
T Consensus 80 TL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~~--~~V~tG~FGA~M~V~l~NDGPVTi~lds 145 (145)
T 1jke_A 80 TLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQE--MNTQTGRFAADMQVSLVNDGPVTFWLQV 145 (145)
T ss_dssp GGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTT--CCEEECCTTSCEEEEEEEEEEEEEEEEC
T ss_pred ccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CcceeCccCCCcEEEEEeCCCEEEEEeC
Confidence 999997 9999999999999999999999999999875 5799999999999999999999999996
No 3
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase, structural genomics, hypothetical structure 2 function project, S2F; 1.64A {Haemophilus influenzae rd KW20} SCOP: c.110.1.1
Probab=100.00 E-value=2.1e-70 Score=436.40 Aligned_cols=142 Identities=31% Similarity=0.488 Sum_probs=137.9
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|||+++++|++|||+||||+++||+++++|||+||++||||+|++|| ||+||+|++||||+||||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Kil~lRif~de~gk-mn~Sv~d~~g~iL~VSQF 79 (144)
T 1j7g_A 1 MIALIQRVSQAKVDVKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDK-MNLNVQQAQGELLIVSQF 79 (144)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEECTTSC-EEECTTTTTCEEEEEECG
T ss_pred CEEEEEEECeEEEEECCEEEEEECCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCcCCC-ccCCHHHcCCCEEEEEcc
Confidence 45 8899999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeC
Q psy11634 97 TLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLES 163 (178)
Q Consensus 97 TL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds 163 (178)
||||++ ||||||||.||+|++|++||++|+++|++. .+|++|+|||||+|+|+|||||||+|||
T Consensus 80 TL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~---~~V~tG~FGA~M~V~l~NDGPVTi~lds 144 (144)
T 1j7g_A 80 TLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEK---LPVSTGQFAADMQVSLTNDGPVTFWLNV 144 (144)
T ss_dssp GGGCBCSSTTSCBCTTBCCHHHHHHHHHHHHHHHHTT---SCEEECCTTSCCEEEEEEEEEEEEEEEC
T ss_pred ccccccCCCCCCCccccCCHHHHHHHHHHHHHHHhcC---CCeeeCccCCCeEEEEEECCCEEEEEeC
Confidence 999997 999999999999999999999999999975 6899999999999999999999999996
No 4
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE, ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-70 Score=455.42 Aligned_cols=151 Identities=52% Similarity=0.849 Sum_probs=143.7
Q ss_pred ee-eEEEeceeEEEECCEEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeeeecc
Q psy11634 18 FK-QLVKHTPFVCLVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCISQF 96 (178)
Q Consensus 18 m~-~lQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~VSQF 96 (178)
|| +||||++|+|+|||+++++|++|||+||||+++||+++++|||+||++||||+|++||+||+||+|++|+|||||||
T Consensus 1 MRaViQRV~~AsV~Vdg~vvg~Ig~GllvLvGv~~~Dt~~d~~~la~Kil~LRIF~De~GK~mn~Sv~Dv~GeiLvVSQF 80 (209)
T 2okv_A 1 MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEILCVSQF 80 (209)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCBCCTTCCTTCBCHHHHTCEEEEEECG
T ss_pred CEEEEEEeCeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCCCCCcccCCHHHcCCCEEEEEee
Confidence 45 88999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccccCcCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCCCCC
Q psy11634 97 TLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPSEKS 168 (178)
Q Consensus 97 TL~g~~KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~~~~ 168 (178)
||||++||||||||.||+|++|++||++|+++||+.+.+.+|++|+|||||+|+|+|||||||+|||++...
T Consensus 81 TL~ad~KG~RPsF~~Aa~pe~A~~LYe~Fv~~lr~~~~~~~V~tG~FGA~M~V~LvNDGPVTi~lds~~~~~ 152 (209)
T 2okv_A 81 TLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGPVTIELESPAPGT 152 (209)
T ss_dssp GGSCCCSSSSCCCTTBCCHHHHHHHHHHHHHHHHHHSCGGGEEECCTTSCEEEEEEEEEEEEEEEECCC---
T ss_pred eccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCCccEeCcccCCcEEEEEeCCCEEEEEECCCccc
Confidence 999999999999999999999999999999999988765689999999999999999999999999987444
No 5
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A {Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A* 3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A 3lmu_A 3lmv_A*
Probab=100.00 E-value=9.7e-70 Score=440.50 Aligned_cols=150 Identities=36% Similarity=0.636 Sum_probs=140.2
Q ss_pred ee-eEEEeceeEEEE----CC------EEEEEECCeEEEEEecccCCCHHHHHHHHHHHhceeecccCCCcccccccccc
Q psy11634 18 FK-QLVKHTPFVCLV----DS------NVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDK 86 (178)
Q Consensus 18 m~-~lQRV~~AsV~V----d~------~~v~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~ 86 (178)
|| +||||++|+|+| || +++++||+|||+||||+++||+++++|||+||++||||+|++|| ||+||+|+
T Consensus 1 MraviQRV~~AsV~V~~~~dg~s~~~~~~vg~Ig~GllvlvGv~~~Dt~~~~~~l~~Kil~lRiF~de~gk-mn~Sv~d~ 79 (164)
T 3ko5_A 1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKT-WDKNVKDL 79 (164)
T ss_dssp CEEEEEEEEEEEEEEECC--------EEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEEETTEE-EEECTTTT
T ss_pred CEEEEEEeCeEEEEEeecCCCCccccceEEEEeCCceEEEEEEcCCCCHHHHHHHHHHHhcEEeecCCCcc-cccCHHHc
Confidence 55 889999999999 99 89999999999999999999999999999999999999999665 99999999
Q ss_pred CCeeeeeecccccccC-cCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCceEEEEeCCC
Q psy11634 87 KYEILCISQFTLYHGL-KGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGPVTIPLESPS 165 (178)
Q Consensus 87 ~geIL~VSQFTL~g~~-KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGPVTi~lds~~ 165 (178)
+|+|||||||||||++ ||||||||.||+|++|++||++|+++||+.|.+.+|++|+|||||+|+|+|||||||+|||++
T Consensus 80 ~G~iL~VSQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~fv~~lr~~~~~~~V~tG~FGA~M~V~l~NDGPVTi~lds~~ 159 (164)
T 3ko5_A 80 NYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159 (164)
T ss_dssp TCEEEEEECGGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHHHSCTTSEEECCTTSCEEEEEEEEEEEEEEEEGGG
T ss_pred CCCEEEEEccccccccCCCCCCcccccCCHHHHHHHHHHHHHHHHhhCCCCceEecccCCceEEEEEECCCEEEEEecCC
Confidence 9999999999999997 999999999999999999999999999988866899999999999999999999999999976
Q ss_pred CCC
Q psy11634 166 EKS 168 (178)
Q Consensus 166 ~~~ 168 (178)
...
T Consensus 160 ~~~ 162 (164)
T 3ko5_A 160 INL 162 (164)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 6
>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA; SGPP, structural genomics, PSI; 1.93A {Leishmania major} SCOP: c.110.1.1
Probab=100.00 E-value=2.3e-63 Score=411.13 Aligned_cols=149 Identities=22% Similarity=0.304 Sum_probs=142.7
Q ss_pred eeeeeeeEEEeceeEEEECCEE-EEEECCeEEEEEecccC-----CCHHHHHHHHHHHhceeecc--cCCCcccc--ccc
Q psy11634 14 YVKYFKQLVKHTPFVCLVDSNV-ISSIGMGLCILIGISRH-----DTEKDMDYIVNKILKLKIFE--NEEGKRWA--SSV 83 (178)
Q Consensus 14 ~~~~m~~lQRV~~AsV~Vd~~~-v~~Ig~GllvlvGi~~~-----Dt~~d~~~~a~Kil~LRiF~--d~~gk~~~--~Sv 83 (178)
.|.++.+||||++|+|+|||++ +++||+|||+||||.++ ||+++++|||+||++||||+ |++|| || +||
T Consensus 8 ~~~~r~viQRV~~AsV~Vdg~~~vg~Ig~Gllvlvgi~~~~~~~~Dt~~~~~~l~~Kil~lRIF~~~de~gk-mn~~~Sv 86 (194)
T 1tc5_A 8 HMTIRVMLQAMDQGHLLVNNVDKYVRAGRGVMVYIAFLSDRDSAPITDEALRHAVGVLLHTKIFTHFSPEKM-INQPQSL 86 (194)
T ss_dssp CCEEEEEEEEESEEEEECSSSSCEEEECSEEEEEEEEECCTTCCCCCHHHHHHHHHHHHHSCCBSCSCTTCS-SCCCBCS
T ss_pred ceeEEEEEEEECeeEEEECCeEEEEEECCeEEEEEEEecCCCCCCCCHHHHHHHHHHhhcEEeccccCcccC-cccCCCh
Confidence 4677889999999999999999 99999999999999999 99999999999999999999 88885 99 999
Q ss_pred cccCC-eeeeeecccccccCcCCCCCCCCCCCChhHHHHHHHHHHHHHhcCC---------------------------C
Q psy11634 84 SDKKY-EILCISQFTLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYD---------------------------L 135 (178)
Q Consensus 84 ~D~~g-eIL~VSQFTL~g~~KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~---------------------------~ 135 (178)
+|++| +|||||||||||++||||||||.||+|++|++||++|+++||+.|+ +
T Consensus 87 ~D~~g~eiLvVSQFTL~g~~KGrrPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
T 1tc5_A 87 EECPEMDILIVPQASLGGKVKGRSVQFHQLVAKDVGAALYDRFCHFVRVARGVDESRVDANGAPRSEGDAPKAEGWIKYN 166 (194)
T ss_dssp TTCTTCEEEEEECGGGGCEEETTEEECTTBCCHHHHHHHHHHHHHHHHHHTTCCTTSBCTTSSBSSGGGSCCSSSCCCCC
T ss_pred hhcCCCeEEEEEccccccccCCCCCCcccCCCHHHHHHHHHHHHHHHHHhhCcccccccccccccccccccccccccccC
Confidence 99999 9999999999999999999999999999999999999999998753 5
Q ss_pred CceeeCccCceeEEEEEeCCceEEEEeC
Q psy11634 136 SKVKDGKFGAHMSVNIVNDGPVTIPLES 163 (178)
Q Consensus 136 ~~Vk~G~FGa~M~V~l~NDGPVTi~lds 163 (178)
.+|++|+|||+|+|+|+|||||||+||.
T Consensus 167 ~~V~tG~FGa~M~V~l~NDGPvTi~lD~ 194 (194)
T 1tc5_A 167 SRVISGTFGNRQGLRFESEGPFTHMFDI 194 (194)
T ss_dssp SCEEECCTTSCCCEEEEESCCCCEEEEC
T ss_pred CceeECcccCCeEEEEEeCCCEEEEEeC
Confidence 7899999999999999999999999984
No 7
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=65.11 E-value=45 Score=26.02 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=68.4
Q ss_pred EEEECCeEEEEEecccCCC---HHHHHHHHHHHhceeecccCCCccccccccccC-CeeeeeecccccccCcCCCCCCCC
Q psy11634 36 ISSIGMGLCILIGISRHDT---EKDMDYIVNKILKLKIFENEEGKRWASSVSDKK-YEILCISQFTLYHGLKGNGLTFHH 111 (178)
Q Consensus 36 v~~Ig~GllvlvGi~~~Dt---~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~-geIL~VSQFTL~g~~KG~rPsF~~ 111 (178)
-+++..-|++|+.|+++|. +..+++.++-|..+ + + .++ -.|++=|=.-|. ++
T Consensus 32 ~~~~e~aLVvF~~VE~~De~~~~~vv~~av~eI~~~--a----~--------kv~~~~ivlYPyAHLS----------s~ 87 (143)
T 2hl0_A 32 RGRMEEVLVAFISVEKVDEKNPEEVSLKAIEEISKV--A----E--------QVKAENVFVYPFAHLS----------SE 87 (143)
T ss_dssp EEEEEEEEEEEEECBGGGGGCHHHHHHHHHHHHHHH--H----H--------HHTCCEEEEEECGGGC----------SS
T ss_pred ccceeeeEEEEEEEccCCcCCHHHHHHHHHHHHHHH--H----H--------hcCCCEEEEecccccc----------Cc
Confidence 4677889999999999998 77788777766642 0 1 112 124444433342 23
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCC
Q psy11634 112 AMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDG 155 (178)
Q Consensus 112 A~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDG 155 (178)
-++|+.|.++-...-+.|++. +..|..=-||=+=..+|..-|
T Consensus 88 La~P~~A~~iL~~le~~L~~~--g~eV~raPFGwyK~F~i~ckG 129 (143)
T 2hl0_A 88 LAKPSVAMDILNRVYQGLKER--GFNVGKAPFGYYKAFKISCKG 129 (143)
T ss_dssp BCCHHHHHHHHHHHHHHHHHT--TCEEEECCSSEEEEEEEEECC
T ss_pred cCChHHHHHHHHHHHHHHHhC--CCeEEEeCCccceeEEEEecC
Confidence 468999999999999999975 357999999988888887766
No 8
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=63.24 E-value=6.4 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=30.1
Q ss_pred cccccccCcCCCCCCC--------------CCCCChhHHHHHHHHHHHHHhcC
Q psy11634 95 QFTLYHGLKGNGLTFH--------------HAMGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~--------------~A~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
|.| .|++.+.||++- ..|++++|...|-..++++...|
T Consensus 43 QAt-~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv~~l~~~~ 94 (96)
T 2lbb_A 43 QAT-VGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLAPSW 94 (96)
T ss_dssp HTT-TSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCGGG
T ss_pred HHh-cCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchh
Confidence 555 367888999763 46999999999999999887654
No 9
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=62.34 E-value=4.8 Score=28.77 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=29.9
Q ss_pred cccccccCcCCCCCCCC--------------CCCChhHHHHHHHHHHHHHhcC
Q psy11634 95 QFTLYHGLKGNGLTFHH--------------AMGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~~--------------A~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
|.|. |++.+.||+|-+ .|++++|...|-..++++...|
T Consensus 36 QAt~-Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l~~ky 87 (89)
T 3epy_A 36 QAIV-GDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKY 87 (89)
T ss_dssp HHHT-CSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-CCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhhh
Confidence 4553 567788997643 5899999999999999998665
No 10
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=53.54 E-value=10 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=29.0
Q ss_pred cccccccCcCCCCCCC--------------CCCCChhHHHHHHHHHHHHHhcC
Q psy11634 95 QFTLYHGLKGNGLTFH--------------HAMGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~--------------~A~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
|.|. |++.+.||++- ..|++++|...|-..++++...+
T Consensus 36 QAt~-Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~ 87 (89)
T 1hbk_A 36 QSTI-GNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYW 87 (89)
T ss_dssp HHHT-CSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCTTT
T ss_pred Hhhc-CCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccc
Confidence 4443 66788899763 45999999999999998887554
No 11
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=47.22 E-value=9.4 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.440 Sum_probs=22.9
Q ss_pred eeecccCCCccccccccccCCeeeeeec
Q psy11634 68 LKIFENEEGKRWASSVSDKKYEILCISQ 95 (178)
Q Consensus 68 LRiF~d~~gk~~~~Sv~D~~geIL~VSQ 95 (178)
.-+|.+.+|+ |.-.++.-||+||+-||
T Consensus 3 Fei~~~~~G~-frfrLka~NGevI~sSe 29 (64)
T 3bid_A 3 FEIYKDAKGE-YRWRLKAANHEIIAQGE 29 (64)
T ss_dssp EEEEECTTSC-EEEEEECTTSCEEEECC
T ss_pred EEEEECCCCC-EEEEEEeCCCCEEEECC
Confidence 4577788785 88899999999999888
No 12
>2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D
Probab=45.40 E-value=9 Score=30.74 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=43.2
Q ss_pred ccCCeeeeeeccccccc----CcCCCCCCCCC----CCChhHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCCc
Q psy11634 85 DKKYEILCISQFTLYHG----LKGNGLTFHHA----MGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDGP 156 (178)
Q Consensus 85 D~~geIL~VSQFTL~g~----~KG~rPsF~~A----~~p~~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDGP 156 (178)
-++|..|+||||--.|- .+-.-|+|... +.--. -=...|+.-|++..+.-.+++-.| +|..+-+..|-
T Consensus 31 aVDGK~LLvSQ~PQLGPRk~DPND~tPQFD~dRRiS~R~RH--vDLA~lV~V~e~r~p~h~m~n~ay--~l~FEkt~~GY 106 (187)
T 2gia_B 31 AVDGKLLLISQYPQLGPRKVDPNDLSPQFDADRRISVRLRH--VDLAYLVGVCKERVPRHRMETKAY--TLDFEKSAQGY 106 (187)
T ss_dssp EEETTEEEEEEEEBCSSCCCCTTCCSCSBCGGGCEEEECCH--HHHHHHHHHHTTSSSEEEEECSSC--EEEEEECSSEE
T ss_pred EecceeeeehhCcccCCCcCCCCcCCccccccceeeEEeee--cchhhheeehhccCchhhhcccce--eeeeeecCcce
Confidence 47899999999999994 36778999854 22111 112457888876654334554433 45555555554
Q ss_pred e
Q psy11634 157 V 157 (178)
Q Consensus 157 V 157 (178)
+
T Consensus 107 ~ 107 (187)
T 2gia_B 107 H 107 (187)
T ss_dssp E
T ss_pred E
Confidence 4
No 13
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=39.82 E-value=23 Score=24.88 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.2
Q ss_pred cccccccCcCCCCCCC--------------CCCCChhHHHHHHHHHHHHHhcC
Q psy11634 95 QFTLYHGLKGNGLTFH--------------HAMGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~--------------~A~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
|.|. |++.+.||++- ..|++++|...|-..++++...|
T Consensus 34 QAt~-Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~~~~ 85 (87)
T 2cb8_A 34 QATV-GDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKY 85 (87)
T ss_dssp HHHT-CSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-CCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4443 66778899752 45999999999999999987654
No 14
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.50 E-value=32 Score=25.72 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHhceeecccCCCccccccccccCCeeeee-ecccccccCcCCCCCCC--------------CCCCChh
Q psy11634 53 DTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEILCI-SQFTLYHGLKGNGLTFH--------------HAMGGAD 117 (178)
Q Consensus 53 Dt~~d~~~~a~Kil~LRiF~d~~gk~~~~Sv~D~~geIL~V-SQFTL~g~~KG~rPsF~--------------~A~~p~~ 117 (178)
+.++.-+..++.+-+|+- +. |- |...++--- =|.|. |++.+.||+|- ..|+.++
T Consensus 15 ~~~~~F~~A~~~vk~l~~--~p-------~~-~~~L~LYaLyKQAt~-Gd~~~~~Pg~~d~~graKw~AW~~l~gms~ee 83 (116)
T 2cqu_A 15 ASQKDFENSMNQVKLLKK--DP-------GN-EVKLKLYALYKQATE-GPCNMPKPGVFDLINKAKWDAWNALGSLPKEA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHCCS--CC-------CH-HHHHHHHHHHTTTTT-CSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHHHHHHccC--CC-------CH-HHHHHHHHHHHHHhc-CCCCCCCCCcccHHHHHHHHHHHHhcCCCHHH
Confidence 457777877777766541 11 10 110000001 15553 66778999873 4799999
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy11634 118 SEVFYNKFLEKLKTAYD 134 (178)
Q Consensus 118 A~~LY~~Fv~~lr~~~~ 134 (178)
|...|-..++++...+.
T Consensus 84 Am~~YI~lv~~l~~~~~ 100 (116)
T 2cqu_A 84 ARQNYVDLVSSLSPSLE 100 (116)
T ss_dssp HHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHHHccccc
Confidence 99999999999986654
No 15
>3if8_A Hzwilch, protein zwilch homolog; incomplete beta-barrel, alternative splicing, cell cycle, CE division, kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens}
Probab=38.05 E-value=31 Score=30.25 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeCccCceeEEEEEeCC
Q psy11634 117 DSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSVNIVNDG 155 (178)
Q Consensus 117 ~A~~LY~~Fv~~lr~~~~~~~Vk~G~FGa~M~V~l~NDG 155 (178)
.|+++|.+.+..+.+.-++..-..=.|-+|.||.++++|
T Consensus 13 aA~efy~~ll~~~~e~kk~i~kdpf~ye~DvqV~li~~g 51 (339)
T 3if8_A 13 AAEDFYSRLLQKFNEEKKGIRKDPFLYEADVQVQLISKG 51 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCEESSSSEEEEEECTT
T ss_pred HHHHHHHHHHHHHhhhhccccCCCeeeecccEEEEEeCC
Confidence 589999999999976443322222358899999999776
No 16
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.26 E-value=24 Score=26.01 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=30.2
Q ss_pred cccccccCcCCCCCCC--------------CCCCChhHHHHHHHHHHHHHhcCC
Q psy11634 95 QFTLYHGLKGNGLTFH--------------HAMGGADSEVFYNKFLEKLKTAYD 134 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~--------------~A~~p~~A~~LY~~Fv~~lr~~~~ 134 (178)
|.|. |+|.+.||+|- ..|++++|...|-..++++...+.
T Consensus 40 QAt~-Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~YI~lv~~l~~~~~ 92 (109)
T 2cop_A 40 QVKV-GNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWN 92 (109)
T ss_dssp HHHT-CSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCTTCC
T ss_pred Hhhc-CCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhc
Confidence 4443 56777899763 459999999999999999976663
No 17
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=35.23 E-value=22 Score=24.85 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=29.1
Q ss_pred cccccccCcCCCCCCC--------------CCCCChhHHHHHHHHHHHHHhcC
Q psy11634 95 QFTLYHGLKGNGLTFH--------------HAMGGADSEVFYNKFLEKLKTAY 133 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~--------------~A~~p~~A~~LY~~Fv~~lr~~~ 133 (178)
|.|. |++.+.||++- ..|++++|...|-..++++...+
T Consensus 33 QAt~-Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~ 84 (86)
T 1st7_A 33 QATV-GDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKY 84 (86)
T ss_dssp HHHH-CSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-CCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhh
Confidence 4443 56788899863 45899999999999999887654
No 18
>2yma_A YOS9P, protein OS-9 homolog; carbohydrate binding protein, quality control, endoplasmic reticulum-associated protein degradation; 2.54A {Saccharomyces cerevisiae}
Probab=34.45 E-value=26 Score=27.95 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=42.9
Q ss_pred CeEEEEEecccCC----CHHHH---HHHHHHHhceeecccCCCc--------cccccccccCCeeeeeeccccc
Q psy11634 41 MGLCILIGISRHD----TEKDM---DYIVNKILKLKIFENEEGK--------RWASSVSDKKYEILCISQFTLY 99 (178)
Q Consensus 41 ~GllvlvGi~~~D----t~~d~---~~~a~Kil~LRiF~d~~gk--------~~~~Sv~D~~geIL~VSQFTL~ 99 (178)
+-.|.|.|=.+.| +++-. -...+|++.++++.-++|+ .|..-|.|..|+.|++=+|+|-
T Consensus 34 r~~LMYtgn~~~d~d~~~~~~yk~~g~A~~kml~~~ll~~P~g~p~~~gD~ftW~adVVD~~G~~lt~l~l~i~ 107 (161)
T 2yma_A 34 RDKLMVTDNAMSNWDEITETYYQKFGNAINKMLSLRLVSLPNGHILQPGDSCVWLAEVVDMKDRFQTTLSLNIL 107 (161)
T ss_dssp CCEEEECCGGGCCSSSCCHHHHHHHHHHHHHHHHTTCCBCTTSCBCCTTCEEEEEEEEECTTCCEEEEEEEEEC
T ss_pred hheEEEecccccccchHHHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCCeEEEEEEEEecCCCEEEEEEEEec
Confidence 4456666655444 23333 3445899999999876654 3889999999999999999996
No 19
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=33.58 E-value=33 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=30.2
Q ss_pred cccccccCcCCCCCCCC--------------CCCChhHHHHHHHHHHHHHhcCC
Q psy11634 95 QFTLYHGLKGNGLTFHH--------------AMGGADSEVFYNKFLEKLKTAYD 134 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~~--------------A~~p~~A~~LY~~Fv~~lr~~~~ 134 (178)
|.| .|++...||+|-+ .|++++|...|-..++++.+.++
T Consensus 60 QAT-~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~~v~~l~~~~~ 112 (119)
T 3flv_A 60 QAT-EGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMP 112 (119)
T ss_dssp HHH-TCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHh-cCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhhCC
Confidence 455 3567788998643 48999999999999999977664
No 20
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=30.61 E-value=35 Score=25.03 Aligned_cols=37 Identities=11% Similarity=-0.066 Sum_probs=28.4
Q ss_pred cccccccCcCCCCCCCC--------------CCCChhHHHHHHHHHHHHHhc
Q psy11634 95 QFTLYHGLKGNGLTFHH--------------AMGGADSEVFYNKFLEKLKTA 132 (178)
Q Consensus 95 QFTL~g~~KG~rPsF~~--------------A~~p~~A~~LY~~Fv~~lr~~ 132 (178)
|.| .|+|.+.||+|-+ .|++++|...|-..++++...
T Consensus 40 QAt-~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 40 QAT-VGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKLLEILKK 90 (106)
T ss_dssp HHH-TCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHh-cCCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcc
Confidence 445 3567788998643 589999999999999888654
No 21
>2g5x_A Lychnin, ribosome-inactivating protein; alpha-beta protein, hydrolase; 1.70A {Lychnis chalcedonica}
Probab=29.08 E-value=40 Score=27.81 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhcCCC-CceeeCcc-------CceeEEEEE--e-CCceEEEEeCCC
Q psy11634 106 GLTFHHAMGGADSEVFYNKFLEKLKTAYDL-SKVKDGKF-------GAHMSVNIV--N-DGPVTIPLESPS 165 (178)
Q Consensus 106 rPsF~~A~~p~~A~~LY~~Fv~~lr~~~~~-~~Vk~G~F-------Ga~M~V~l~--N-DGPVTi~lds~~ 165 (178)
||+|+--+. ..=|..|++.||++... .....|.- ...+-|.|. | +..+|+.++..+
T Consensus 1 ~~~~tv~at----~~~Y~~FI~~LR~~l~~~~~~~~~iPvL~~~~~~r~vlV~L~~~~~~~~iTLai~~~N 67 (234)
T 2g5x_A 1 RPSWTVDSD----SAKYSSFLDSLREEFGRGTPKVCNIPVTKKANNDKFVLVNLVLPFNRNTITLAFRASD 67 (234)
T ss_dssp CCEEECSSC----HHHHHHHHHHHHHHHHTTSCCBTTBCBCCTTGGGCEEEEEEECTTTCCEEEEEEETTT
T ss_pred CCceEEeCC----HHHHHHHHHHHHHHhhcCCcccCCEeccCCCCCCCEEEEEEEecCCCCeEEEEEECCC
Confidence 788886544 34499999999976421 11111211 235678888 3 357888888653
No 22
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=24.99 E-value=27 Score=24.83 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=22.5
Q ss_pred eeecccCCCccccccccccCCeeeeeec
Q psy11634 68 LKIFENEEGKRWASSVSDKKYEILCISQ 95 (178)
Q Consensus 68 LRiF~d~~gk~~~~Sv~D~~geIL~VSQ 95 (178)
.-||.+.+|+ |.-.++.-||+|+..||
T Consensus 25 FEi~k~~~Gq-~rFrLkA~NGevIasSe 51 (83)
T 2k7i_A 25 FEIYQDKAGE-YRFRFKASNGETMFSSE 51 (83)
T ss_dssp EEEEECTTSC-EEEEECCTTSCCCEEBC
T ss_pred EEEEEcCCCC-EEEEEEECCCCEEEECC
Confidence 5566787776 88888999999999998
No 23
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=23.06 E-value=87 Score=22.58 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=26.2
Q ss_pred EEECCeEEEEEecccCCCHHHHHHHHHHHhceeecc
Q psy11634 37 SSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFE 72 (178)
Q Consensus 37 ~~Ig~GllvlvGi~~~Dt~~d~~~~a~Kil~LRiF~ 72 (178)
+.=|+.++.||.+..+.|+++.+.+.. +=...||.
T Consensus 5 sKkgkt~M~FV~v~g~~t~~e~e~it~-~WqtsL~N 39 (89)
T 3ofh_A 5 TKKGKTLMMFVTVSGNPTEKETEEITS-LWQGSLFN 39 (89)
T ss_dssp CCCSSCEEEEEEESSCCCHHHHHHHHH-HHHHHHHH
T ss_pred ccCCCeEEEEEEecCCCCHHHHHHHHH-HHHHHHHh
Confidence 455889999999999999999888743 33334443
No 24
>1dm0_A Shiga toxin A subunit; AB5 structure, polypeptide A, blocking, active site; 2.50A {Shigella dysenteriae} SCOP: d.165.1.2 PDB: 1r4q_A
Probab=22.68 E-value=1.1e+02 Score=25.93 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCCceeeCccC-------------ceeEEEEEe-CC------ceEEEEeCCC
Q psy11634 120 VFYNKFLEKLKTAYDLSKVKDGKFG-------------AHMSVNIVN-DG------PVTIPLESPS 165 (178)
Q Consensus 120 ~LY~~Fv~~lr~~~~~~~Vk~G~FG-------------a~M~V~l~N-DG------PVTi~lds~~ 165 (178)
.=|..|++.||++... +-.+-.+| ...-|.|.| +| .+|+.++..+
T Consensus 11 ~~Y~~FI~~LR~~l~~-~~~~~~~~G~~iPvL~~~~~~r~ilV~L~~~~~~~~~~~~itLai~~~N 75 (287)
T 1dm0_A 11 KTYVDSLNVIRSAIGT-PLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVERNN 75 (287)
T ss_dssp HHHHHHHHHHHHHHEE-EEEEEEETTEEEEEEC----CCEEEEEEECSSTTTCCCCCCEEEEETTT
T ss_pred hhHHHHHHHHHHHhhc-cCcccccCCcccccccCCCCCCEEEEEEEeCCCCccccceEEEEEECCC
Confidence 4499999999986421 10001243 367789998 33 8999998654
No 25
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=22.29 E-value=49 Score=24.87 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhcCC-CCceeeCc--cCceeE------EEEEeCCceEEEEe
Q psy11634 117 DSEVFYNKFLEKLKTAYD-LSKVKDGK--FGAHMS------VNIVNDGPVTIPLE 162 (178)
Q Consensus 117 ~A~~LY~~Fv~~lr~~~~-~~~Vk~G~--FGa~M~------V~l~NDGPVTi~ld 162 (178)
..++||+..++.+++... +-+|-.|. ||++-. +.+..|-||.+.+=
T Consensus 23 ~g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPVvIe~V 77 (127)
T 2dcl_A 23 EGRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSRVHSSDVIRLSTDLPIIVEVV 77 (127)
T ss_dssp TTEEHHHHHHHHHHHTTCSCEEEEECSEEEC--------------CCCEEEEEEE
T ss_pred CCcCHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEecceeeecCCCCCEEEEEE
Confidence 356899999999997642 34555555 666655 45667999988653
No 26
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=21.84 E-value=40 Score=28.01 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhceeecc-cCCCccccccc---cccCCeeeeeecccccccCcCCCCCCCCC-CCChhHHHHHHHHHHHHH
Q psy11634 56 KDMDYIVNKILKLKIFE-NEEGKRWASSV---SDKKYEILCISQFTLYHGLKGNGLTFHHA-MGGADSEVFYNKFLEKLK 130 (178)
Q Consensus 56 ~d~~~~a~Kil~LRiF~-d~~gk~~~~Sv---~D~~geIL~VSQFTL~g~~KG~rPsF~~A-~~p~~A~~LY~~Fv~~lr 130 (178)
+.+...-+-|..| ||. |.+=.+|...= .+-+-.|=+=-|||||.+ |+=-++ -+|+.. .=...|++.|.
T Consensus 91 ~qv~~AF~al~~L-L~SeDSPvDKWKVTDM~rv~~qsRV~~GAQfTLY~K-----pd~edsqYs~~~l-~k~r~fi~~lE 163 (220)
T 3bo6_A 91 EQVPQAFQALSGL-LFSVDSPIDKWKVTDMERVDQQSRVAVGAQFTLYVK-----PDQENSQYSASSL-HNTRQFIECLE 163 (220)
T ss_dssp GGHHHHHHHHHHH-HTCTTCSCSEEEEECTTTBCTTSTTTSSCCEEEECC-----CSSTTSCCCHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hcCCCCCcceeeeccccccchhhhhcccceEEEEec-----CccccccCCHHHH-HHHHHHHHHHH
Confidence 3444444444444 344 42223465321 122233334459999985 222222 223333 33467887776
Q ss_pred hcCCCCceeeCcc
Q psy11634 131 TAYDLSKVKDGKF 143 (178)
Q Consensus 131 ~~~~~~~Vk~G~F 143 (178)
......-|..|..
T Consensus 164 ~~L~~aGi~pg~~ 176 (220)
T 3bo6_A 164 SRLSESGLMPGQY 176 (220)
T ss_dssp HHHHHTTCCBCCC
T ss_pred HHHHHcCCCCCCC
Confidence 5432222445543
No 27
>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis}
Probab=21.36 E-value=42 Score=28.43 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhceeecccC-CCccccccc---cccCCeeeeeecccccccCcCCCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy11634 56 KDMDYIVNKILKLKIFENE-EGKRWASSV---SDKKYEILCISQFTLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKT 131 (178)
Q Consensus 56 ~d~~~~a~Kil~LRiF~d~-~gk~~~~Sv---~D~~geIL~VSQFTL~g~~KG~rPsF~~A~~p~~A~~LY~~Fv~~lr~ 131 (178)
+.+...-+-|..| +|+++ .=.+|...= .+-+-.|=+=-|||||.+ |+=-++-=......=...|++.|..
T Consensus 121 ~qv~qAF~al~~L-L~SeDSPvDKWKVTDM~rv~~qsRV~~GAQfTLY~K-----pd~edsqYs~~~l~k~r~fi~~lE~ 194 (250)
T 2p1w_A 121 DMVPQAFQALSGL-LFSEDSPVDKWKVTDMEKVVQQARVSLGAQFTLYIK-----PDQENSQYSASFLHKTRQFIECLES 194 (250)
T ss_dssp GGHHHHHHHHHHH-HTCTTCSCCEEEEECHHHHHHTTCCCSSCCEEEECC-----CSSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh-hcCCCCCcceeeecccccCcchhhhcccceEEEEec-----CccccccCCHHHHHHHHHHHHHHHH
Confidence 4455444444554 34433 223465331 112334444459999984 2222222222323334678887765
Q ss_pred cCCCCceeeCcc
Q psy11634 132 AYDLSKVKDGKF 143 (178)
Q Consensus 132 ~~~~~~Vk~G~F 143 (178)
.....-|..|..
T Consensus 195 ~L~~aGi~pg~~ 206 (250)
T 2p1w_A 195 RLSENGVISGQC 206 (250)
T ss_dssp HHHHTTCCBCCC
T ss_pred HHHHcCCCCCCC
Confidence 432222445543
No 28
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=21.12 E-value=46 Score=24.97 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHh
Q psy11634 107 LTFHHAMGGADSEVFYNKFLEKLKT 131 (178)
Q Consensus 107 PsF~~A~~p~~A~~LY~~Fv~~lr~ 131 (178)
-+||.-+.++ +..|++.|++.+++
T Consensus 162 vQfHPE~~~~-g~~l~~~F~~~~~~ 185 (186)
T 2ywj_A 162 LSFHPELSED-GYKVYKYFVENCVK 185 (186)
T ss_dssp ESSCGGGSTT-HHHHHHHHHHHHTC
T ss_pred EECCCCcCCc-hhHHHHHHHHHHhh
Confidence 4678655554 79999999998864
No 29
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=20.15 E-value=77 Score=23.23 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHhcCC-CCceeeCc--cCceeE------EEEEeCCceEEEEe
Q psy11634 117 DSEVFYNKFLEKLKTAYD-LSKVKDGK--FGAHMS------VNIVNDGPVTIPLE 162 (178)
Q Consensus 117 ~A~~LY~~Fv~~lr~~~~-~~~Vk~G~--FGa~M~------V~l~NDGPVTi~ld 162 (178)
..++||+..++.+++... +-+|-.|. ||++-. ..+..|.||.+.+=
T Consensus 27 ~g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~V 81 (114)
T 1o51_A 27 SGKPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIV 81 (114)
T ss_dssp TTEEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEE
T ss_pred CCeEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEE
Confidence 356899999999997642 45665665 555554 34567899988653
Done!