RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11634
         (178 letters)



>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia
           coli [TaxId: 562]}
          Length = 145

 Score =  150 bits (381), Expect = 6e-48
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 31  VDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEI 90
           V+  V   IG GL +L+G+ + D E+  + +  ++L  +IF + EGK    +V      +
Sbjct: 15  VEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNL-NVQQAGGSV 73

Query: 91  LCISQFTLY-HGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSV 149
           L +SQFTL     +G   +F        +E  Y+ F+E+ +        + G+F A M V
Sbjct: 74  LVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEM--NTQTGRFAADMQV 131

Query: 150 NIVNDGPVTIPLE 162
           ++VNDGPVT  L+
Sbjct: 132 SLVNDGPVTFWLQ 144


>d1j7ga_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Haemophilus
           influenzae [TaxId: 727]}
          Length = 144

 Score =  148 bits (374), Expect = 8e-47
 Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 31  VDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLKIFENEEGKRWASSVSDKKYEI 90
           V    I  IG GL +L+G+ + D  +  D +  K+L  +IF +E  K    +V   + E+
Sbjct: 15  VKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMN-LNVQQAQGEL 73

Query: 91  LCISQFTLY-HGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDLSKVKDGKFGAHMSV 149
           L +SQFTL     KG   +F      A +   Y  F++K         V  G+F A M V
Sbjct: 74  LIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEKL---PVSTGQFAADMQV 130

Query: 150 NIVNDGPVTIPLE 162
           ++ NDGPVT  L 
Sbjct: 131 SLTNDGPVTFWLN 143


>d1tc5a_ c.110.1.1 (A:) probable eukaryotic D-amino acid tRNA
           deacylase {Leishmania major [TaxId: 5664]}
          Length = 187

 Score =  142 bits (359), Expect = 4e-44
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 28  VCLVDSNVISSIGMGLCILIGISRHD-----TEKDMDYIVNKILKLKIFENEEGK---RW 79
           + + + +     G G+ + I           T++ + + V  +L  KIF +   +     
Sbjct: 16  LLVNNVDKYVRAGRGVMVYIAFLSDRDSAPITDEALRHAVGVLLHTKIFTHFSPEKMINQ 75

Query: 80  ASSVSD-KKYEILCISQFTLYHGLKGNGLTFHHAMGGADSEVFYNKFLEKLKTAYDL--- 135
             S+ +  + +IL + Q +L   +KG  + FH  +        Y++F   ++ A  +   
Sbjct: 76  PQSLEECPEMDILIVPQASLGGKVKGRSVQFHQLVAKDVGAALYDRFCHFVRVARGVDES 135

Query: 136 ------------------------SKVKDGKFGAHMSVNIVNDGPVTIPLE 162
                                   S+V  G FG    +   ++GP T   +
Sbjct: 136 RVDANGAPRSEGDAPKAEGWIKYNSRVISGTFGNRQGLRFESEGPFTHMFD 186


>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
           {Lactobacillus sp., strain 30a [TaxId: 1591]}
          Length = 462

 Score = 27.7 bits (60), Expect = 0.98
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 30  LVDSNVISSIGMGLCILIGISRHDTEKDMDYIVNKILKLK 69
           L D  +I        IL  ++  +T   M+ ++ ++L+L+
Sbjct: 417 LRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQ 456


>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
           [TaxId: 549]}
          Length = 456

 Score = 26.3 bits (57), Expect = 2.5
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 45  ILIGISRHD-TEKDMDYIVNKILKLK 69
           + + I R   T   MD + + I+KL 
Sbjct: 403 VRLTIPRRVYTYAHMDVVADGIIKLY 428


>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
           protein C {Helicobacter pylori [TaxId: 210]}
          Length = 371

 Score = 25.5 bits (54), Expect = 4.0
 Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 44  CILIGISRHDTEKDMDYIVNKILKLKIFEN 73
            I +    +   + +  I + +  LK FE+
Sbjct: 343 EISLPCHANLNLESVQNIAHSV--LKTFES 370


>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
           {Campylobacter jejuni [TaxId: 197]}
          Length = 374

 Score = 25.0 bits (53), Expect = 7.1
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 44  CILIGISRHDTEKDMDYIVNKILK 67
            I +      ++ D+  I   ILK
Sbjct: 348 GICLPSGTAMSKDDVYEISKLILK 371


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,996
Number of extensions: 28644
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 14
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)