BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11637
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 11 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA 48
LR YQEK+L + + R G IVLP G+GK+ V + A
Sbjct: 94 LRDYQEKALERWLVDKR---GCIVLPTGSGKTHVAMAA 128
>pdb|2FZ4|A Chain A, Crystal Structure Of The N-Terminal Half Of Archaeoglobus
Fulgidus Xpb
Length = 237
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 11 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA 48
LR YQEK+L + + R G IVLP G+GK+ V + A
Sbjct: 94 LRDYQEKALERWLVDKR---GCIVLPTGSGKTHVAMAA 128
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 6 KPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV 46
+P LRPYQ + + ++ +I LP G+GK+ V V
Sbjct: 29 EPELQLRPYQMEVAQPAL---EGKNIIICLPTGSGKTRVAV 66
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.85 A
Length = 400
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL+PY SL + F NG +SGV V
Sbjct: 25 VLQPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL PY SL + F NG +SGV V
Sbjct: 24 VLEPYMTPSLFEPFQNGNDQSGVPV 48
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7
A
Length = 399
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL PY SL + F NG +SGV V
Sbjct: 24 VLEPYMTPSLFEPFQNGNDQSGVPV 48
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL PY SL + F NG +SGV V
Sbjct: 25 VLEPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL PY SL + F NG +SGV V
Sbjct: 25 VLEPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL PY SL + F NG +SGV V
Sbjct: 25 VLEPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL PY SL + F NG +SGV V
Sbjct: 19 VLEPYMTPSLFEPFQNGNDQSGVPV 43
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 10 VLRPYQEKSLRKMFGNGRARSGVIV 34
VL PY SL + F NG +SGV V
Sbjct: 19 VLEPYMTPSLFEPFQNGNDQSGVPV 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,810,067
Number of Sequences: 62578
Number of extensions: 55733
Number of successful extensions: 160
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 11
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)