BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11637
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Drosophila melanogaster
GN=hay PE=1 SV=2
Length = 798
Score = 134 bits (336), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/64 (95%), Positives = 63/64 (98%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC
Sbjct: 322 INIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 381
Query: 61 NSGV 64
NSGV
Sbjct: 382 NSGV 385
>sp|Q4G005|ERCC3_RAT TFIIH basal transcription factor complex helicase XPB subunit
OS=Rattus norvegicus GN=Ercc3 PE=2 SV=1
Length = 782
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/64 (89%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365
Query: 61 NSGV 64
NS V
Sbjct: 366 NSAV 369
>sp|Q5RA62|ERCC3_PONAB TFIIH basal transcription factor complex helicase XPB subunit
OS=Pongo abelii GN=ERCC3 PE=2 SV=1
Length = 782
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/64 (89%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365
Query: 61 NSGV 64
NS V
Sbjct: 366 NSAV 369
>sp|P49135|ERCC3_MOUSE TFIIH basal transcription factor complex helicase XPB subunit
OS=Mus musculus GN=Ercc3 PE=2 SV=1
Length = 783
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/64 (89%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 307 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 366
Query: 61 NSGV 64
NS V
Sbjct: 367 NSAV 370
>sp|Q60HG1|ERCC3_MACFA TFIIH basal transcription factor complex helicase XPB subunit
OS=Macaca fascicularis GN=ERCC3 PE=2 SV=1
Length = 782
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/64 (89%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365
Query: 61 NSGV 64
NS V
Sbjct: 366 NSAV 369
>sp|P19447|ERCC3_HUMAN TFIIH basal transcription factor complex helicase XPB subunit
OS=Homo sapiens GN=ERCC3 PE=1 SV=1
Length = 782
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/64 (89%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365
Query: 61 NSGV 64
NS V
Sbjct: 366 NSAV 369
>sp|Q5ZKK7|ERCC3_CHICK TFIIH basal transcription factor complex helicase XPB subunit
OS=Gallus gallus GN=ERCC3 PE=2 SV=1
Length = 788
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/64 (89%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 303 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 362
Query: 61 NSGV 64
NS V
Sbjct: 363 NSAV 366
>sp|Q1RMT1|ERCC3_BOVIN TFIIH basal transcription factor complex helicase XPB subunit
OS=Bos taurus GN=ERCC3 PE=2 SV=1
Length = 782
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/64 (89%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365
Query: 61 NSGV 64
NS V
Sbjct: 366 NSAV 369
>sp|Q7ZVV1|ERCC3_DANRE TFIIH basal transcription factor complex helicase XPB subunit
OS=Danio rerio GN=ercc3 PE=2 SV=1
Length = 782
Score = 120 bits (300), Expect = 3e-27, Method: Composition-based stats.
Identities = 56/64 (87%), Positives = 59/64 (92%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ +DLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL
Sbjct: 305 INMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 364
Query: 61 NSGV 64
NS V
Sbjct: 365 NSSV 368
>sp|O00835|ERCC3_DICDI TFIIH basal transcription factor complex helicase repB subunit
OS=Dictyostelium discoideum GN=repB PE=2 SV=1
Length = 800
Score = 109 bits (273), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/64 (75%), Positives = 55/64 (85%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+ ++RPYQEKSL KMFGNGRARSG+IVLPCGAGKSL G+TA CTV+K LVLC
Sbjct: 308 LNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSGITAACTVKKSILVLC 367
Query: 61 NSGV 64
S V
Sbjct: 368 TSAV 371
>sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SSL2 PE=1 SV=1
Length = 843
Score = 109 bits (272), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKPS +RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG+TA CT++K +VLC
Sbjct: 352 LDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLC 411
Query: 61 NSGV 64
S V
Sbjct: 412 TSSV 415
>sp|O13768|ERCC3_SCHPO Probable DNA repair helicase ercc3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ercc3 PE=1 SV=1
Length = 804
Score = 109 bits (272), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKPS +RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG+TA CT++K +VLC
Sbjct: 314 LPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLC 373
Query: 61 NSGV 64
S V
Sbjct: 374 TSSV 377
>sp|Q8SSK1|RAD25_ENCCU Probable DNA repair helicase RAD25 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RAD25 PE=3 SV=1
Length = 696
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/64 (64%), Positives = 52/64 (81%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKP+ ++R YQE L KMFGNGRARSG+IVLPCG+GK++VG+TA T++K LVLC
Sbjct: 223 LQIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVGITAISTIKKNCLVLC 282
Query: 61 NSGV 64
S V
Sbjct: 283 TSAV 286
>sp|A9CRJ7|RAD25_ENTBH Probable DNA repair helicase RAD25 homolog OS=Enterocytozoon
bieneusi (strain H348) GN=RAD25 PE=3 SV=1
Length = 609
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/64 (65%), Positives = 52/64 (81%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ IDLKPS +R YQE SL KM GNGRARSG+IVLPCG+GK+LVG+TA T++K A++LC
Sbjct: 179 LHIDLKPSCHIRSYQEISLNKMLGNGRARSGIIVLPCGSGKTLVGITAISTIKKSAIILC 238
Query: 61 NSGV 64
S V
Sbjct: 239 TSAV 242
>sp|C4V922|RAD25_NOSCE Probable DNA repair helicase RAD25 homolog OS=Nosema ceranae
(strain BRL01) GN=RAD25 PE=3 SV=1
Length = 659
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/62 (66%), Positives = 50/62 (80%)
Query: 3 IDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNS 62
IDLKPS ++R YQE L KMF NGRARSG+IVLPCG+GK+LVG+TA T++K L+LC S
Sbjct: 196 IDLKPSTMIRSYQETCLNKMFCNGRARSGIIVLPCGSGKTLVGITALTTIKKSCLILCTS 255
Query: 63 GV 64
V
Sbjct: 256 AV 257
>sp|Q6E6J3|RAD25_ANTLO Probable DNA repair helicase RAD25 homolog OS=Antonospora locustae
GN=RAD25 PE=3 SV=1
Length = 687
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/64 (65%), Positives = 52/64 (81%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ +DL+ + +R YQE SL KMFGN RARSGVIVLPCGAGK+LVG+TA CT++K +VLC
Sbjct: 218 LDMDLRDTVSIRTYQEVSLNKMFGNRRARSGVIVLPCGAGKTLVGITAMCTIKKPCIVLC 277
Query: 61 NSGV 64
SGV
Sbjct: 278 TSGV 281
>sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1
Length = 766
Score = 92.0 bits (227), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/64 (65%), Positives = 50/64 (78%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ ++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVGV+A ++K L L
Sbjct: 272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLA 331
Query: 61 NSGV 64
+ V
Sbjct: 332 TNAV 335
>sp|Q38861|XPB1_ARATH DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3
Length = 767
Score = 92.0 bits (227), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/64 (65%), Positives = 50/64 (78%)
Query: 1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
+ ++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVGV+A ++K L L
Sbjct: 272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLA 331
Query: 61 NSGV 64
+ V
Sbjct: 332 TNAV 335
>sp|P33919|YEJH_ECOLI Uncharacterized protein YejH OS=Escherichia coli (strain K12)
GN=yejH PE=4 SV=2
Length = 586
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 11 LRPYQEKSLRKMFGNGRARS--GVIVLPCGAGKSLVGVTACCTVRKRALVLCN 61
LRPYQ++++ + R VIVLP GAGKSLV R R LVL +
Sbjct: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAH 57
>sp|Q5UQ46|YL396_MIMIV Putative ATP-dependent RNA helicase L396 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L396 PE=3 SV=1
Length = 519
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 4 DLKPSAVLRPYQEKSLRKMF-GNGRARSGVIVLPCGAGKSLVGVTACCTVRKRAL 57
D+ + LRP+Q+ K+ G GV+V+ CG+GK+ V + C + R L
Sbjct: 91 DMTYTGTLRPHQQMVSDKIIKGMEEGGGGVLVMGCGSGKTNVAIYIACKFKLRTL 145
>sp|Q96GY0|ZC21A_HUMAN Zinc finger C2HC domain-containing protein 1A OS=Homo sapiens
GN=ZC2HC1A PE=1 SV=2
Length = 325
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 6 KPSAVLRPYQEKSLRKMFGNGRARSGVIVLP--CGAGKSLVGVTA 48
KP++ + Y+ +L+K G A SG LP GAGK++VGV +
Sbjct: 161 KPTSRTQVYKPPALKKSNSPGTASSGSSRLPQPSGAGKTVVGVPS 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,738,982
Number of Sequences: 539616
Number of extensions: 775061
Number of successful extensions: 2442
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2422
Number of HSP's gapped (non-prelim): 21
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)