Query psy11637
Match_columns 67
No_of_seqs 103 out of 1092
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:44:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fz4_A DNA repair protein RAD2 99.4 1.3E-14 4.4E-19 94.0 -1.6 59 4-65 87-145 (237)
2 2fwr_A DNA repair protein RAD2 99.4 1.1E-14 3.8E-19 100.2 -2.2 58 5-65 88-145 (472)
3 3b6e_A Interferon-induced heli 99.3 1.8E-14 6.2E-19 89.4 -4.5 56 7-65 30-94 (216)
4 2z0m_A 337AA long hypothetical 99.3 6.5E-14 2.2E-18 91.2 -3.2 54 9-65 15-68 (337)
5 3tbk_A RIG-I helicase domain; 99.3 1.1E-13 3.8E-18 95.2 -2.9 55 8-65 2-64 (555)
6 1wp9_A ATP-dependent RNA helic 99.3 8.2E-14 2.8E-18 93.1 -3.6 56 6-65 5-64 (494)
7 4a2p_A RIG-I, retinoic acid in 99.3 1.3E-13 4.4E-18 95.2 -2.9 56 7-65 4-67 (556)
8 1t6n_A Probable ATP-dependent 99.2 2.2E-13 7.4E-18 85.6 -3.0 53 10-65 36-94 (220)
9 1vec_A ATP-dependent RNA helic 99.2 2.6E-13 8.9E-18 84.2 -2.8 53 10-65 25-83 (206)
10 1rif_A DAR protein, DNA helica 99.2 1.6E-13 5.6E-18 89.6 -4.0 54 9-65 112-169 (282)
11 3iuy_A Probable ATP-dependent 99.2 2.9E-13 1E-17 85.6 -2.7 53 10-65 42-106 (228)
12 1qde_A EIF4A, translation init 99.2 4E-13 1.4E-17 84.5 -2.4 53 10-65 36-94 (224)
13 2gxq_A Heat resistant RNA depe 99.2 2.9E-13 1E-17 83.9 -3.1 54 9-65 22-84 (207)
14 2oca_A DAR protein, ATP-depend 99.2 4E-13 1.4E-17 93.2 -2.9 55 8-65 111-169 (510)
15 3h1t_A Type I site-specific re 99.2 1.2E-12 3.9E-17 92.8 -0.8 61 6-66 174-248 (590)
16 1xti_A Probable ATP-dependent 99.2 4.4E-13 1.5E-17 89.1 -3.1 53 10-65 30-88 (391)
17 1q0u_A Bstdead; DEAD protein, 99.2 2.5E-13 8.4E-18 85.6 -4.7 54 9-65 25-84 (219)
18 4gl2_A Interferon-induced heli 99.2 3.3E-13 1.1E-17 96.5 -4.8 56 7-65 4-68 (699)
19 4a2q_A RIG-I, retinoic acid in 99.2 7.9E-13 2.7E-17 96.9 -2.9 55 8-65 246-308 (797)
20 3dkp_A Probable ATP-dependent 99.2 7.9E-13 2.7E-17 84.3 -2.9 53 10-65 51-110 (245)
21 1hv8_A Putative ATP-dependent 99.2 7.1E-13 2.4E-17 86.9 -3.2 54 10-65 28-86 (367)
22 4a2w_A RIG-I, retinoic acid in 99.1 1.1E-12 3.7E-17 98.3 -2.8 58 5-65 243-308 (936)
23 3fe2_A Probable ATP-dependent 99.1 8.4E-13 2.9E-17 84.5 -3.0 53 10-65 51-114 (242)
24 2pl3_A Probable ATP-dependent 99.1 8.8E-13 3E-17 83.7 -2.9 54 9-65 46-109 (236)
25 2v1x_A ATP-dependent DNA helic 99.1 1.5E-12 5.2E-17 93.8 -2.0 53 10-65 44-96 (591)
26 3pey_A ATP-dependent RNA helic 99.1 1.1E-12 3.7E-17 86.8 -2.9 56 9-65 26-87 (395)
27 1wrb_A DJVLGB; RNA helicase, D 99.1 2.5E-12 8.4E-17 82.5 -1.9 54 9-65 44-112 (253)
28 1s2m_A Putative ATP-dependent 99.1 1.5E-12 5.2E-17 87.0 -3.1 53 10-65 43-101 (400)
29 3ber_A Probable ATP-dependent 99.1 1.6E-12 5.4E-17 84.2 -3.2 53 10-65 65-123 (249)
30 2oxc_A Probable ATP-dependent 99.1 2.4E-12 8.1E-17 81.9 -2.5 53 10-65 46-104 (230)
31 3oiy_A Reverse gyrase helicase 99.1 1.2E-12 4E-17 88.7 -4.2 55 8-65 19-76 (414)
32 3bor_A Human initiation factor 99.1 9E-13 3.1E-17 84.3 -4.6 53 10-65 52-110 (237)
33 2ykg_A Probable ATP-dependent 99.1 2.7E-12 9.2E-17 91.7 -2.9 55 8-65 11-73 (696)
34 3eiq_A Eukaryotic initiation f 99.1 2.4E-12 8.3E-17 86.1 -3.0 54 9-65 61-120 (414)
35 2j0s_A ATP-dependent RNA helic 99.1 3.7E-12 1.3E-16 85.6 -2.5 53 10-65 59-117 (410)
36 3ly5_A ATP-dependent RNA helic 99.1 2E-12 6.8E-17 84.2 -3.7 53 10-65 76-138 (262)
37 1fuu_A Yeast initiation factor 99.1 1.5E-12 5E-17 86.5 -4.9 54 9-65 42-101 (394)
38 1oyw_A RECQ helicase, ATP-depe 99.1 2.1E-12 7.2E-17 91.5 -4.5 53 10-65 25-77 (523)
39 3fho_A ATP-dependent RNA helic 99.0 4.9E-12 1.7E-16 88.8 -3.0 55 10-65 141-201 (508)
40 3fht_A ATP-dependent RNA helic 99.0 7.1E-12 2.4E-16 83.6 -2.4 56 9-65 46-107 (412)
41 1z63_A Helicase of the SNF2/RA 99.0 1E-11 3.5E-16 85.9 -2.1 56 8-63 35-96 (500)
42 4a4z_A Antiviral helicase SKI2 99.0 2.5E-11 8.6E-16 91.8 -1.5 56 7-65 36-94 (997)
43 3i5x_A ATP-dependent RNA helic 99.0 1.9E-11 6.6E-16 85.6 -2.9 55 10-65 94-158 (563)
44 2i4i_A ATP-dependent RNA helic 98.9 2E-11 6.9E-16 81.8 -3.4 54 9-65 36-113 (417)
45 3mwy_W Chromo domain-containin 98.9 4.1E-11 1.4E-15 88.3 -2.0 57 8-64 234-297 (800)
46 3sqw_A ATP-dependent RNA helic 98.9 3.1E-11 1.1E-15 85.5 -2.9 55 10-65 43-107 (579)
47 3l9o_A ATP-dependent RNA helic 98.9 3.5E-11 1.2E-15 91.9 -3.0 56 7-65 181-239 (1108)
48 2xgj_A ATP-dependent RNA helic 98.9 3.7E-11 1.2E-15 91.1 -2.9 55 8-65 84-141 (1010)
49 3fmp_B ATP-dependent RNA helic 98.9 4.9E-11 1.7E-15 82.3 -2.8 55 10-65 114-174 (479)
50 2db3_A ATP-dependent RNA helic 98.9 4.5E-11 1.5E-15 82.3 -3.1 53 10-65 78-141 (434)
51 2w00_A HSDR, R.ECOR124I; ATP-b 98.9 1.4E-10 4.8E-15 88.4 -1.0 58 8-65 269-342 (1038)
52 2vl7_A XPD; helicase, unknown 98.9 6.9E-11 2.4E-15 84.0 -2.7 57 8-64 5-62 (540)
53 3dmq_A RNA polymerase-associat 98.9 1.1E-10 3.7E-15 87.9 -2.2 55 7-62 150-209 (968)
54 3crv_A XPD/RAD3 related DNA he 98.8 9.9E-11 3.4E-15 83.2 -2.5 57 9-65 2-59 (551)
55 2va8_A SSO2462, SKI2-type heli 98.8 7.9E-11 2.7E-15 85.1 -3.2 54 10-65 30-87 (715)
56 2p6r_A Afuhel308 helicase; pro 98.8 3.7E-11 1.3E-15 86.8 -5.0 53 10-65 25-80 (702)
57 2zj8_A DNA helicase, putative 98.8 9.8E-11 3.4E-15 84.9 -3.4 53 10-65 23-80 (720)
58 2eyq_A TRCF, transcription-rep 98.8 1.6E-10 5.6E-15 88.3 -3.1 59 7-65 600-664 (1151)
59 3fmo_B ATP-dependent RNA helic 98.8 1.5E-10 5.2E-15 76.9 -3.0 55 10-65 114-174 (300)
60 4b3f_X DNA-binding protein smu 98.8 2E-10 6.8E-15 82.9 -3.1 56 9-66 188-246 (646)
61 1gm5_A RECG; helicase, replica 98.7 1.8E-10 6.1E-15 85.7 -4.2 58 8-65 366-429 (780)
62 1z3i_X Similar to RAD54-like; 98.7 4.2E-10 1.4E-14 81.4 -2.6 55 9-63 54-124 (644)
63 4ddu_A Reverse gyrase; topoiso 98.7 3.6E-10 1.2E-14 86.3 -3.6 55 8-65 76-133 (1104)
64 4a15_A XPD helicase, ATP-depen 98.7 4.1E-10 1.4E-14 81.6 -3.2 56 9-64 2-62 (620)
65 4f92_B U5 small nuclear ribonu 98.5 2.7E-09 9.3E-14 84.4 -2.7 54 10-65 926-984 (1724)
66 4f92_B U5 small nuclear ribonu 98.5 3.3E-09 1.1E-13 83.9 -2.6 54 10-65 79-146 (1724)
67 1gku_B Reverse gyrase, TOP-RG; 98.5 3.5E-09 1.2E-13 80.4 -3.7 53 9-65 56-111 (1054)
68 2gk6_A Regulator of nonsense t 98.4 1.4E-08 4.9E-13 73.2 -2.4 55 9-66 179-237 (624)
69 3llm_A ATP-dependent RNA helic 98.4 1.8E-08 6.1E-13 64.3 -2.0 54 8-64 59-120 (235)
70 2xzl_A ATP-dependent helicase 98.3 2.3E-08 8E-13 74.4 -2.4 55 9-66 359-417 (802)
71 3o8b_A HCV NS3 protease/helica 98.2 1.4E-08 4.8E-13 74.7 -5.2 53 10-65 217-269 (666)
72 2wjy_A Regulator of nonsense t 98.2 5.3E-08 1.8E-12 72.5 -2.4 55 9-66 355-413 (800)
73 2wv9_A Flavivirin protease NS2 98.1 5.3E-08 1.8E-12 71.4 -4.5 56 10-65 215-282 (673)
74 2d7d_A Uvrabc system protein B 98.1 2.5E-07 8.6E-12 67.4 -1.2 63 2-64 4-68 (661)
75 2jlq_A Serine protease subunit 98.1 1.1E-07 3.8E-12 66.0 -3.2 52 11-65 5-60 (451)
76 2v6i_A RNA helicase; membrane, 98.0 1.5E-07 5.2E-12 65.1 -3.0 37 29-65 3-43 (431)
77 2z83_A Helicase/nucleoside tri 98.0 1.3E-07 4.3E-12 65.9 -3.6 44 20-65 15-62 (459)
78 1yks_A Genome polyprotein [con 97.9 1.6E-07 5.6E-12 65.1 -4.3 37 29-65 9-49 (440)
79 2whx_A Serine protease/ntpase/ 97.9 1.9E-07 6.4E-12 67.7 -4.6 48 15-65 176-227 (618)
80 3e1s_A Exodeoxyribonuclease V, 97.9 3.5E-07 1.2E-11 65.9 -3.3 55 8-65 187-244 (574)
81 1c4o_A DNA nucleotide excision 97.9 6.2E-07 2.1E-11 65.4 -2.6 57 8-64 6-64 (664)
82 1w36_D RECD, exodeoxyribonucle 97.8 8.3E-07 2.8E-11 64.1 -3.2 50 13-65 152-208 (608)
83 3upu_A ATP-dependent DNA helic 97.8 7.3E-07 2.5E-11 62.0 -3.6 56 10-65 25-86 (459)
84 2xau_A PRE-mRNA-splicing facto 97.7 1.5E-06 5E-11 64.5 -3.0 52 12-65 95-152 (773)
85 3rc3_A ATP-dependent RNA helic 97.7 2.1E-06 7.2E-11 63.1 -2.3 36 29-65 156-191 (677)
86 3lfu_A DNA helicase II; SF1 he 97.5 3.9E-06 1.3E-10 59.5 -3.3 51 10-65 9-66 (647)
87 1tf5_A Preprotein translocase 97.2 2E-05 6.9E-10 59.6 -1.9 50 10-64 83-135 (844)
88 1jbk_A CLPB protein; beta barr 97.1 0.0001 3.4E-09 43.6 0.7 40 12-51 27-66 (195)
89 2fsf_A Preprotein translocase 97.1 3.2E-05 1.1E-09 58.6 -2.1 50 10-64 74-126 (853)
90 1nkt_A Preprotein translocase 97.1 3.8E-05 1.3E-09 58.5 -1.9 49 11-64 110-163 (922)
91 2p65_A Hypothetical protein PF 96.9 0.00012 4.1E-09 43.4 -0.1 37 15-51 30-66 (187)
92 2chg_A Replication factor C sm 96.7 0.00025 8.4E-09 42.7 0.2 39 12-50 22-60 (226)
93 1uaa_A REP helicase, protein ( 96.6 5.2E-05 1.8E-09 54.7 -4.3 51 10-65 2-59 (673)
94 3co5_A Putative two-component 96.6 0.00071 2.4E-08 40.0 1.4 23 29-51 28-50 (143)
95 2ipc_A Preprotein translocase 96.5 9.8E-05 3.4E-09 56.7 -3.3 50 10-64 79-131 (997)
96 1d2n_A N-ethylmaleimide-sensit 96.5 0.00014 4.8E-09 46.7 -2.4 32 28-59 64-95 (272)
97 3ec2_A DNA replication protein 96.4 0.00041 1.4E-08 41.9 -0.3 39 13-51 17-61 (180)
98 3bos_A Putative DNA replicatio 96.4 0.00062 2.1E-08 41.8 0.4 36 16-51 37-75 (242)
99 3h4m_A Proteasome-activating n 96.4 0.00016 5.5E-09 46.4 -2.4 32 28-59 51-82 (285)
100 2qby_A CDC6 homolog 1, cell di 96.4 0.00024 8.3E-09 46.5 -1.7 41 12-52 25-69 (386)
101 3hws_A ATP-dependent CLP prote 96.3 0.00013 4.4E-09 48.9 -3.3 29 29-57 52-80 (363)
102 3n70_A Transport activator; si 96.3 0.00074 2.5E-08 39.9 0.3 23 29-51 25-47 (145)
103 2cvh_A DNA repair and recombin 96.3 0.00035 1.2E-08 42.9 -1.4 44 17-60 7-52 (220)
104 1pjr_A PCRA; DNA repair, DNA r 96.3 0.00017 5.9E-09 52.7 -3.2 51 10-65 11-68 (724)
105 2dr3_A UPF0273 protein PH0284; 96.2 0.00035 1.2E-08 43.5 -1.4 43 18-60 11-58 (247)
106 2qby_B CDC6 homolog 3, cell di 96.2 0.00047 1.6E-08 45.6 -1.0 41 12-52 25-69 (384)
107 2v1u_A Cell division control p 96.2 0.00025 8.6E-09 46.5 -2.3 41 12-52 24-68 (387)
108 1p9r_A General secretion pathw 96.2 0.0016 5.6E-08 45.4 1.6 39 11-50 151-189 (418)
109 1tue_A Replication protein E1; 96.1 0.00011 3.8E-09 47.8 -4.2 42 19-60 48-90 (212)
110 3a8t_A Adenylate isopentenyltr 96.1 0.00024 8.3E-09 48.8 -3.1 27 29-55 41-67 (339)
111 3te6_A Regulatory protein SIR3 96.0 0.00065 2.2E-08 46.0 -1.1 41 12-52 25-69 (318)
112 1njg_A DNA polymerase III subu 96.0 0.00095 3.2E-08 40.4 -0.4 39 12-50 28-67 (250)
113 1sxj_D Activator 1 41 kDa subu 95.9 0.0017 5.9E-08 42.3 0.7 35 17-51 47-81 (353)
114 1ofh_A ATP-dependent HSL prote 95.9 0.00035 1.2E-08 44.9 -2.7 31 29-59 51-81 (310)
115 3t15_A Ribulose bisphosphate c 95.9 0.00032 1.1E-08 46.1 -2.9 31 29-59 37-67 (293)
116 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.00031 1E-08 44.3 -3.2 31 29-59 40-70 (262)
117 4b4t_M 26S protease regulatory 95.8 0.00043 1.5E-08 48.8 -2.7 34 28-61 215-248 (434)
118 3pfi_A Holliday junction ATP-d 95.8 0.00057 2E-08 44.8 -2.2 29 29-57 56-84 (338)
119 3pxg_A Negative regulator of g 95.8 0.002 7E-08 44.9 0.5 32 20-51 193-224 (468)
120 3syl_A Protein CBBX; photosynt 95.8 0.0024 8.3E-08 41.2 0.8 24 29-52 68-91 (309)
121 1sxj_A Activator 1 95 kDa subu 95.7 0.00071 2.4E-08 47.7 -2.0 31 29-59 78-108 (516)
122 4b4t_L 26S protease subunit RP 95.7 0.00052 1.8E-08 48.4 -2.7 34 28-61 215-248 (437)
123 1n0w_A DNA repair protein RAD5 95.7 0.00098 3.4E-08 41.4 -1.2 34 17-50 11-46 (243)
124 1iqp_A RFCS; clamp loader, ext 95.7 0.0016 5.3E-08 42.0 -0.3 37 15-51 30-69 (327)
125 1a5t_A Delta prime, HOLB; zinc 95.6 0.0028 9.7E-08 42.1 0.8 41 11-51 3-47 (334)
126 1hqc_A RUVB; extended AAA-ATPa 95.6 0.00078 2.7E-08 43.7 -1.9 29 29-57 39-67 (324)
127 4b4t_K 26S protease regulatory 95.6 0.00058 2E-08 48.0 -2.7 34 28-61 206-239 (428)
128 3u4q_A ATP-dependent helicase/ 95.6 0.00068 2.3E-08 52.3 -2.6 54 7-65 7-69 (1232)
129 2chq_A Replication factor C sm 95.6 0.0018 6.3E-08 41.5 -0.2 37 15-51 22-61 (319)
130 2z43_A DNA repair and recombin 95.6 0.0013 4.5E-08 43.7 -0.9 45 17-61 94-149 (324)
131 1qhx_A CPT, protein (chloramph 95.6 0.00043 1.5E-08 41.4 -3.1 26 29-54 4-29 (178)
132 1fnn_A CDC6P, cell division co 95.6 0.0018 6.3E-08 42.6 -0.3 41 12-52 22-68 (389)
133 2zts_A Putative uncharacterize 95.6 0.00061 2.1E-08 42.4 -2.4 44 17-60 17-66 (251)
134 1sxj_B Activator 1 37 kDa subu 95.6 0.0026 8.9E-08 40.8 0.4 37 15-51 29-65 (323)
135 3trf_A Shikimate kinase, SK; a 95.5 0.00039 1.3E-08 42.0 -3.4 24 29-52 6-29 (185)
136 2ze6_A Isopentenyl transferase 95.5 0.00039 1.3E-08 44.9 -3.6 22 31-52 4-25 (253)
137 1lv7_A FTSH; alpha/beta domain 95.5 0.0005 1.7E-08 43.7 -3.0 29 29-57 46-74 (257)
138 4b4t_J 26S protease regulatory 95.5 0.00066 2.3E-08 47.6 -2.8 34 28-61 182-215 (405)
139 3cf0_A Transitional endoplasmi 95.4 0.00062 2.1E-08 44.7 -3.0 29 29-57 50-78 (301)
140 3eie_A Vacuolar protein sortin 95.4 0.00061 2.1E-08 45.0 -3.0 31 29-59 52-82 (322)
141 2bjv_A PSP operon transcriptio 95.4 0.0035 1.2E-07 39.9 0.6 23 29-51 30-52 (265)
142 3lw7_A Adenylate kinase relate 95.4 0.0016 5.5E-08 38.0 -1.0 19 30-48 3-21 (179)
143 2qgz_A Helicase loader, putati 95.4 0.00073 2.5E-08 45.0 -2.8 23 29-51 153-175 (308)
144 2w58_A DNAI, primosome compone 95.4 0.0024 8.3E-08 39.0 -0.2 23 29-51 55-77 (202)
145 3b85_A Phosphate starvation-in 95.4 0.0064 2.2E-07 38.5 1.7 35 9-46 5-40 (208)
146 3d8b_A Fidgetin-like protein 1 95.4 0.0011 3.7E-08 44.6 -2.0 32 28-59 117-148 (357)
147 1l8q_A Chromosomal replication 95.4 0.00096 3.3E-08 43.8 -2.2 31 29-59 38-71 (324)
148 1zp6_A Hypothetical protein AT 95.4 0.0027 9.4E-08 38.2 -0.0 23 29-51 10-32 (191)
149 3vfd_A Spastin; ATPase, microt 95.3 0.0012 4E-08 44.7 -2.0 31 29-59 149-179 (389)
150 3pxi_A Negative regulator of g 95.3 0.0038 1.3E-07 45.7 0.5 37 15-51 185-224 (758)
151 3b9p_A CG5977-PA, isoform A; A 95.3 0.00066 2.3E-08 43.8 -3.1 28 29-56 55-82 (297)
152 3jux_A Protein translocase sub 95.3 0.00094 3.2E-08 50.5 -2.7 52 10-64 73-127 (822)
153 3foz_A TRNA delta(2)-isopenten 95.3 0.00073 2.5E-08 46.2 -3.1 25 30-54 12-36 (316)
154 3c8u_A Fructokinase; YP_612366 95.2 0.0041 1.4E-07 38.5 0.5 22 28-49 22-43 (208)
155 1sxj_E Activator 1 40 kDa subu 95.2 0.0032 1.1E-07 41.3 -0.1 36 15-50 19-58 (354)
156 2orw_A Thymidine kinase; TMTK, 95.2 0.00099 3.4E-08 41.3 -2.5 34 29-62 4-40 (184)
157 3exa_A TRNA delta(2)-isopenten 95.1 0.00072 2.5E-08 46.3 -3.4 24 30-53 5-28 (322)
158 1um8_A ATP-dependent CLP prote 95.1 0.00087 3E-08 45.0 -3.1 29 29-57 73-101 (376)
159 3crm_A TRNA delta(2)-isopenten 95.1 0.00087 3E-08 45.7 -3.1 24 30-53 7-30 (323)
160 1r6b_X CLPA protein; AAA+, N-t 95.1 0.0053 1.8E-07 44.7 0.7 34 18-51 197-230 (758)
161 1kgd_A CASK, peripheral plasma 95.1 0.0028 9.6E-08 38.5 -0.6 21 29-49 6-26 (180)
162 1v5w_A DMC1, meiotic recombina 95.0 0.0029 1E-07 42.5 -0.7 45 17-61 109-164 (343)
163 2qp9_X Vacuolar protein sortin 95.0 0.00099 3.4E-08 44.9 -3.1 30 29-58 85-114 (355)
164 1qvr_A CLPB protein; coiled co 95.0 0.0021 7.2E-08 47.8 -1.7 38 15-52 175-215 (854)
165 4b4t_I 26S protease regulatory 94.9 0.0012 4.1E-08 46.8 -2.9 33 28-60 216-248 (437)
166 4b4t_H 26S protease regulatory 94.9 0.001 3.4E-08 47.5 -3.3 33 28-60 243-275 (467)
167 3vaa_A Shikimate kinase, SK; s 94.9 0.00077 2.6E-08 41.5 -3.5 23 29-51 26-48 (199)
168 1ly1_A Polynucleotide kinase; 94.9 0.0028 9.5E-08 37.6 -0.9 21 30-50 4-24 (181)
169 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.0013 4.5E-08 43.8 -2.7 24 29-52 46-69 (322)
170 3vkw_A Replicase large subunit 94.9 0.0017 5.7E-08 46.1 -2.3 35 29-65 162-196 (446)
171 3hu3_A Transitional endoplasmi 94.9 0.0025 8.7E-08 45.1 -1.4 31 29-59 239-269 (489)
172 3cpe_A Terminase, DNA packagin 94.8 0.0028 9.6E-08 45.4 -1.2 53 8-63 161-218 (592)
173 1u0j_A DNA replication protein 94.8 0.0028 9.7E-08 42.2 -1.2 34 17-50 91-126 (267)
174 2r44_A Uncharacterized protein 94.8 0.00072 2.4E-08 44.4 -4.1 37 15-51 32-69 (331)
175 4a74_A DNA repair and recombin 94.8 0.014 4.9E-07 35.6 2.1 33 17-49 12-46 (231)
176 4eun_A Thermoresistant glucoki 94.8 0.0038 1.3E-07 38.3 -0.6 22 29-50 30-51 (200)
177 2c9o_A RUVB-like 1; hexameric 94.8 0.0031 1.1E-07 43.7 -1.1 25 29-53 64-88 (456)
178 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.0029 1E-07 38.7 -1.2 44 17-60 10-58 (235)
179 2fna_A Conserved hypothetical 94.7 0.0027 9.4E-08 41.0 -1.4 47 9-59 15-61 (357)
180 2qen_A Walker-type ATPase; unk 94.7 0.011 3.8E-07 38.1 1.5 40 9-50 14-53 (350)
181 3tau_A Guanylate kinase, GMP k 94.7 0.004 1.4E-07 38.7 -0.6 22 29-50 9-30 (208)
182 3u61_B DNA polymerase accessor 94.7 0.0024 8.3E-08 41.7 -1.7 45 16-60 35-80 (324)
183 3tr0_A Guanylate kinase, GMP k 94.6 0.0042 1.4E-07 37.7 -0.6 20 29-48 8-27 (205)
184 2oap_1 GSPE-2, type II secreti 94.6 0.011 3.8E-07 42.1 1.4 22 29-50 261-282 (511)
185 2i1q_A DNA repair and recombin 94.6 0.0041 1.4E-07 40.9 -0.8 34 17-50 85-120 (322)
186 3kb2_A SPBC2 prophage-derived 94.6 0.0034 1.2E-07 36.9 -1.1 22 30-51 3-24 (173)
187 2kjq_A DNAA-related protein; s 94.6 0.0069 2.3E-07 36.3 0.3 23 29-51 37-59 (149)
188 1g8p_A Magnesium-chelatase 38 94.6 0.0062 2.1E-07 39.7 -0.0 22 29-50 46-67 (350)
189 3pvs_A Replication-associated 94.5 0.0018 6.3E-08 45.3 -2.8 33 21-53 43-75 (447)
190 3uk6_A RUVB-like 2; hexameric 94.5 0.0092 3.1E-07 39.3 0.8 25 29-53 71-95 (368)
191 1c9k_A COBU, adenosylcobinamid 94.5 0.003 1E-07 39.8 -1.6 31 31-62 2-32 (180)
192 1sxj_C Activator 1 40 kDa subu 94.5 0.0071 2.4E-07 39.9 0.2 36 15-50 30-68 (340)
193 1kag_A SKI, shikimate kinase I 94.5 0.0045 1.5E-07 36.7 -0.7 22 29-50 5-26 (173)
194 2eyu_A Twitching motility prot 94.5 0.0081 2.8E-07 39.1 0.4 31 18-49 16-46 (261)
195 1xx6_A Thymidine kinase; NESG, 94.4 0.0015 5.2E-08 41.1 -3.1 34 29-62 9-45 (191)
196 3eph_A TRNA isopentenyltransfe 94.4 0.0017 5.9E-08 45.6 -3.1 25 30-54 4-28 (409)
197 2z4s_A Chromosomal replication 94.4 0.0028 9.5E-08 44.0 -2.0 24 29-52 131-154 (440)
198 3jvv_A Twitching mobility prot 94.4 0.013 4.4E-07 40.0 1.3 32 18-50 114-145 (356)
199 1jr3_A DNA polymerase III subu 94.4 0.0059 2E-07 40.1 -0.4 34 17-50 26-60 (373)
200 1lvg_A Guanylate kinase, GMP k 94.4 0.0061 2.1E-07 37.7 -0.3 20 29-48 5-24 (198)
201 2c95_A Adenylate kinase 1; tra 94.4 0.0016 5.3E-08 39.3 -3.0 24 29-52 10-33 (196)
202 2o0j_A Terminase, DNA packagin 94.4 0.0041 1.4E-07 43.1 -1.3 53 8-63 161-218 (385)
203 2zr9_A Protein RECA, recombina 94.3 0.0038 1.3E-07 42.4 -1.4 45 16-60 46-96 (349)
204 2qmh_A HPR kinase/phosphorylas 94.3 0.0021 7.2E-08 41.6 -2.6 23 29-51 35-57 (205)
205 1ojl_A Transcriptional regulat 94.3 0.0085 2.9E-07 39.6 0.3 22 29-50 26-47 (304)
206 3d3q_A TRNA delta(2)-isopenten 94.3 0.0015 5E-08 44.9 -3.6 24 30-53 9-32 (340)
207 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.005 1.7E-07 43.9 -1.0 38 15-52 27-65 (500)
208 2bdt_A BH3686; alpha-beta prot 94.3 0.0057 2E-07 37.0 -0.7 20 30-49 4-23 (189)
209 2b8t_A Thymidine kinase; deoxy 94.3 0.0022 7.5E-08 41.4 -2.7 34 29-62 13-49 (223)
210 2j41_A Guanylate kinase; GMP, 94.2 0.0055 1.9E-07 37.1 -0.8 21 29-49 7-27 (207)
211 2yvu_A Probable adenylyl-sulfa 94.2 0.0074 2.5E-07 36.4 -0.2 23 29-51 14-36 (186)
212 2ehv_A Hypothetical protein PH 94.2 0.011 3.7E-07 36.7 0.5 33 17-49 17-51 (251)
213 2zan_A Vacuolar protein sortin 94.2 0.0026 8.9E-08 44.1 -2.5 24 29-52 168-191 (444)
214 3fb4_A Adenylate kinase; psych 94.1 0.0015 5.2E-08 40.3 -3.5 22 31-52 3-24 (216)
215 1zd8_A GTP:AMP phosphotransfer 94.1 0.002 6.9E-08 40.3 -2.9 24 29-52 8-31 (227)
216 3dl0_A Adenylate kinase; phosp 94.1 0.0016 5.6E-08 40.2 -3.3 22 31-52 3-24 (216)
217 2rhm_A Putative kinase; P-loop 94.1 0.0078 2.7E-07 36.1 -0.2 23 29-51 6-28 (193)
218 1via_A Shikimate kinase; struc 94.1 0.0015 5.1E-08 39.2 -3.5 22 30-51 6-27 (175)
219 1ixz_A ATP-dependent metallopr 94.1 0.002 7E-08 40.7 -3.0 22 30-51 51-72 (254)
220 3a00_A Guanylate kinase, GMP k 94.1 0.0055 1.9E-07 37.3 -1.0 20 30-49 3-22 (186)
221 3hr8_A Protein RECA; alpha and 94.1 0.005 1.7E-07 42.2 -1.3 46 16-61 46-97 (356)
222 1kht_A Adenylate kinase; phosp 94.0 0.0067 2.3E-07 36.2 -0.6 24 29-52 4-27 (192)
223 3cm0_A Adenylate kinase; ATP-b 94.0 0.007 2.4E-07 36.2 -0.6 22 29-50 5-26 (186)
224 3lnc_A Guanylate kinase, GMP k 94.0 0.0086 3E-07 37.4 -0.2 21 29-49 28-48 (231)
225 1nks_A Adenylate kinase; therm 94.0 0.0073 2.5E-07 36.0 -0.5 24 30-53 3-26 (194)
226 1pzn_A RAD51, DNA repair and r 94.0 0.0062 2.1E-07 41.2 -0.9 35 17-51 118-154 (349)
227 2ewv_A Twitching motility prot 94.0 0.0091 3.1E-07 40.7 -0.2 22 29-50 137-158 (372)
228 2zpa_A Uncharacterized protein 94.0 0.0069 2.3E-07 44.9 -0.8 52 14-66 179-230 (671)
229 2iyv_A Shikimate kinase, SK; t 94.0 0.0013 4.5E-08 39.6 -3.9 22 30-51 4-25 (184)
230 3iij_A Coilin-interacting nucl 93.9 0.0018 6.2E-08 38.9 -3.4 23 29-51 12-34 (180)
231 4fcw_A Chaperone protein CLPB; 93.9 0.0072 2.5E-07 38.9 -0.7 23 29-51 48-70 (311)
232 1qf9_A UMP/CMP kinase, protein 93.9 0.002 6.9E-08 38.5 -3.1 22 30-51 8-29 (194)
233 2qor_A Guanylate kinase; phosp 93.9 0.007 2.4E-07 37.3 -0.7 22 29-50 13-34 (204)
234 1zuh_A Shikimate kinase; alpha 93.9 0.0015 5.3E-08 38.8 -3.7 24 29-52 8-31 (168)
235 1gvn_B Zeta; postsegregational 93.9 0.0074 2.5E-07 39.7 -0.7 24 29-52 34-57 (287)
236 3k1j_A LON protease, ATP-depen 93.9 0.0094 3.2E-07 42.8 -0.3 34 15-50 46-82 (604)
237 2gza_A Type IV secretion syste 93.8 0.021 7.3E-07 38.6 1.4 22 29-50 176-197 (361)
238 4gp7_A Metallophosphoesterase; 93.8 0.014 4.8E-07 35.2 0.5 18 29-46 10-27 (171)
239 3uie_A Adenylyl-sulfate kinase 93.8 0.0084 2.9E-07 36.8 -0.6 23 29-51 26-48 (200)
240 1cke_A CK, MSSA, protein (cyti 93.8 0.007 2.4E-07 37.3 -0.9 20 30-49 7-26 (227)
241 1knq_A Gluconate kinase; ALFA/ 93.8 0.008 2.7E-07 35.8 -0.7 21 29-49 9-29 (175)
242 2vli_A Antibiotic resistance p 93.8 0.0017 5.9E-08 38.8 -3.7 27 29-55 6-32 (183)
243 2bwj_A Adenylate kinase 5; pho 93.7 0.0088 3E-07 36.0 -0.5 24 29-52 13-36 (199)
244 1tev_A UMP-CMP kinase; ploop, 93.7 0.009 3.1E-07 35.6 -0.5 23 29-51 4-26 (196)
245 1u94_A RECA protein, recombina 93.7 0.005 1.7E-07 42.0 -1.8 45 17-61 49-99 (356)
246 3asz_A Uridine kinase; cytidin 93.7 0.011 3.8E-07 36.2 -0.1 20 29-48 7-26 (211)
247 2p5t_B PEZT; postsegregational 93.6 0.0018 6.3E-08 41.4 -3.9 25 29-53 33-57 (253)
248 1e6c_A Shikimate kinase; phosp 93.6 0.0017 5.9E-08 38.5 -3.8 22 30-51 4-25 (173)
249 3bh0_A DNAB-like replicative h 93.6 0.0066 2.3E-07 40.3 -1.3 44 17-60 56-103 (315)
250 3t61_A Gluconokinase; PSI-biol 93.6 0.0072 2.5E-07 36.9 -1.1 22 29-50 19-40 (202)
251 1y63_A LMAJ004144AAA protein; 93.6 0.0087 3E-07 36.3 -0.7 23 29-51 11-33 (184)
252 1iy2_A ATP-dependent metallopr 93.5 0.0031 1.1E-07 40.6 -3.0 23 30-52 75-97 (278)
253 1w5s_A Origin recognition comp 93.5 0.013 4.3E-07 38.9 -0.1 43 10-52 25-76 (412)
254 1f2t_A RAD50 ABC-ATPase; DNA d 93.5 0.013 4.3E-07 35.1 -0.1 19 29-47 24-42 (149)
255 1ypw_A Transitional endoplasmi 93.5 0.0044 1.5E-07 46.1 -2.6 28 28-55 238-265 (806)
256 1aky_A Adenylate kinase; ATP:A 93.5 0.0029 9.8E-08 39.3 -3.1 24 29-52 5-28 (220)
257 3kta_A Chromosome segregation 93.5 0.015 5.1E-07 34.8 0.2 20 29-48 27-46 (182)
258 2r62_A Cell division protease 93.4 0.0045 1.5E-07 39.3 -2.3 24 29-52 45-68 (268)
259 2x8a_A Nuclear valosin-contain 93.4 0.0047 1.6E-07 40.3 -2.3 22 30-51 46-67 (274)
260 1zak_A Adenylate kinase; ATP:A 93.3 0.011 3.7E-07 36.7 -0.6 24 29-52 6-29 (222)
261 1in4_A RUVB, holliday junction 93.3 0.0092 3.1E-07 39.6 -1.0 22 29-50 52-73 (334)
262 2cdn_A Adenylate kinase; phosp 93.3 0.0022 7.5E-08 39.3 -3.8 24 29-52 21-44 (201)
263 3auy_A DNA double-strand break 93.3 0.017 5.9E-07 38.9 0.3 20 29-48 26-45 (371)
264 1e9r_A Conjugal transfer prote 93.2 0.022 7.5E-07 38.8 0.7 18 28-45 53-70 (437)
265 3be4_A Adenylate kinase; malar 93.2 0.0041 1.4E-07 38.7 -2.7 25 29-53 6-30 (217)
266 3bgw_A DNAB-like replicative h 93.2 0.0097 3.3E-07 41.6 -1.1 43 18-60 186-232 (444)
267 2pt7_A CAG-ALFA; ATPase, prote 93.2 0.021 7.1E-07 38.3 0.6 22 29-50 172-193 (330)
268 1xp8_A RECA protein, recombina 93.1 0.0085 2.9E-07 41.1 -1.4 46 16-61 59-110 (366)
269 2if2_A Dephospho-COA kinase; a 93.1 0.015 5.1E-07 35.4 -0.2 20 30-49 3-22 (204)
270 2q6t_A DNAB replication FORK h 93.1 0.011 3.9E-07 40.8 -0.9 44 17-60 188-236 (444)
271 1jjv_A Dephospho-COA kinase; P 93.1 0.0099 3.4E-07 36.3 -1.1 19 31-49 5-23 (206)
272 3f9v_A Minichromosome maintena 93.1 0.026 8.9E-07 40.7 0.9 23 30-52 329-351 (595)
273 1e4v_A Adenylate kinase; trans 93.0 0.015 5E-07 36.0 -0.4 22 31-52 3-24 (214)
274 1ex7_A Guanylate kinase; subst 93.0 0.0028 9.7E-08 39.8 -3.7 24 29-52 2-25 (186)
275 2ce7_A Cell division protein F 92.9 0.0053 1.8E-07 43.6 -2.8 31 29-59 50-80 (476)
276 2jaq_A Deoxyguanosine kinase; 92.9 0.011 3.8E-07 35.5 -1.0 23 31-53 3-25 (205)
277 1ukz_A Uridylate kinase; trans 92.9 0.0032 1.1E-07 38.4 -3.5 23 29-51 16-38 (203)
278 3qf7_A RAD50; ABC-ATPase, ATPa 92.9 0.018 6.1E-07 39.1 -0.1 19 29-47 24-42 (365)
279 1uf9_A TT1252 protein; P-loop, 92.8 0.015 5E-07 35.1 -0.5 22 29-50 9-30 (203)
280 2plr_A DTMP kinase, probable t 92.8 0.015 5.2E-07 35.1 -0.5 24 29-52 5-28 (213)
281 1g41_A Heat shock protein HSLU 92.8 0.005 1.7E-07 43.5 -3.1 30 29-58 51-80 (444)
282 1rz3_A Hypothetical protein rb 92.8 0.04 1.4E-06 33.8 1.4 22 29-50 23-44 (201)
283 1cr0_A DNA primase/helicase; R 92.8 0.013 4.4E-07 37.9 -0.9 44 17-60 23-71 (296)
284 1sq5_A Pantothenate kinase; P- 92.7 0.038 1.3E-06 36.4 1.3 22 29-50 81-102 (308)
285 1ak2_A Adenylate kinase isoenz 92.7 0.0039 1.3E-07 39.3 -3.4 24 29-52 17-40 (233)
286 1z6g_A Guanylate kinase; struc 92.7 0.016 5.6E-07 36.3 -0.4 19 29-47 24-42 (218)
287 2vhj_A Ntpase P4, P4; non- hyd 92.7 0.0022 7.4E-08 44.1 -4.9 32 29-60 124-155 (331)
288 2bbw_A Adenylate kinase 4, AK4 92.7 0.015 5.3E-07 36.7 -0.6 21 29-49 28-48 (246)
289 2r6a_A DNAB helicase, replicat 92.7 0.011 3.8E-07 40.9 -1.4 44 17-60 191-239 (454)
290 2grj_A Dephospho-COA kinase; T 92.6 0.0049 1.7E-07 38.6 -3.0 23 29-51 13-35 (192)
291 3tlx_A Adenylate kinase 2; str 92.6 0.0051 1.7E-07 39.3 -3.0 23 29-51 30-52 (243)
292 2qt1_A Nicotinamide riboside k 92.5 0.02 7E-07 35.0 -0.2 22 29-50 22-43 (207)
293 3ney_A 55 kDa erythrocyte memb 92.5 0.021 7.2E-07 36.2 -0.1 22 29-50 20-41 (197)
294 3sr0_A Adenylate kinase; phosp 92.5 0.014 4.7E-07 36.9 -1.1 21 31-51 3-23 (206)
295 4a1f_A DNAB helicase, replicat 92.4 0.016 5.4E-07 39.5 -0.9 44 17-60 34-81 (338)
296 3cf2_A TER ATPase, transitiona 92.4 0.0075 2.6E-07 45.4 -2.7 32 28-59 238-269 (806)
297 2wwf_A Thymidilate kinase, put 92.3 0.021 7.3E-07 34.6 -0.3 23 29-51 11-33 (212)
298 4e22_A Cytidylate kinase; P-lo 92.3 0.019 6.4E-07 36.8 -0.6 21 29-49 28-48 (252)
299 2pbr_A DTMP kinase, thymidylat 92.3 0.015 5E-07 34.7 -1.1 22 31-52 3-24 (195)
300 2pt5_A Shikimate kinase, SK; a 92.3 0.016 5.6E-07 34.0 -0.8 21 31-51 3-23 (168)
301 1nlf_A Regulatory protein REPA 92.3 0.0099 3.4E-07 38.3 -2.0 22 29-50 31-52 (279)
302 2v54_A DTMP kinase, thymidylat 92.2 0.019 6.5E-07 34.7 -0.6 24 29-52 5-28 (204)
303 1znw_A Guanylate kinase, GMP k 92.2 0.03 1E-06 34.5 0.3 19 29-47 21-39 (207)
304 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.017 5.9E-07 37.0 -0.9 23 29-51 5-27 (260)
305 3kl4_A SRP54, signal recogniti 92.1 0.006 2E-07 42.9 -3.3 32 29-60 98-132 (433)
306 3nwn_A Kinesin-like protein KI 92.1 0.042 1.4E-06 37.8 1.0 34 14-47 84-124 (359)
307 3umf_A Adenylate kinase; rossm 92.1 0.022 7.6E-07 36.4 -0.4 23 29-51 30-52 (217)
308 1nn5_A Similar to deoxythymidy 92.1 0.024 8.2E-07 34.4 -0.3 23 29-51 10-32 (215)
309 1x88_A Kinesin-like protein KI 92.0 0.053 1.8E-06 37.2 1.4 34 14-47 68-108 (359)
310 1bg2_A Kinesin; motor protein, 92.0 0.041 1.4E-06 37.3 0.8 34 14-47 57-97 (325)
311 1s96_A Guanylate kinase, GMP k 92.0 0.026 8.9E-07 35.8 -0.2 20 29-48 17-36 (219)
312 3dm5_A SRP54, signal recogniti 92.0 0.0084 2.9E-07 42.4 -2.7 32 29-60 101-135 (443)
313 3qkt_A DNA double-strand break 91.9 0.028 9.6E-07 37.5 -0.1 33 10-47 10-42 (339)
314 1ye8_A Protein THEP1, hypothet 91.9 0.035 1.2E-06 34.1 0.3 16 30-45 2-17 (178)
315 1t5c_A CENP-E protein, centrom 91.9 0.047 1.6E-06 37.4 1.0 33 14-47 57-97 (349)
316 1ltq_A Polynucleotide kinase; 91.8 0.02 6.7E-07 36.9 -0.9 21 30-50 4-24 (301)
317 3b6u_A Kinesin-like protein KI 91.8 0.048 1.6E-06 37.7 1.0 33 14-47 81-121 (372)
318 1r6b_X CLPA protein; AAA+, N-t 91.8 0.0087 3E-07 43.6 -2.9 27 30-56 490-516 (758)
319 4akg_A Glutathione S-transfera 91.8 0.029 9.8E-07 46.9 -0.2 25 19-45 1260-1284(2695)
320 2z0h_A DTMP kinase, thymidylat 91.7 0.018 6.3E-07 34.5 -1.1 22 31-52 3-24 (197)
321 4ag6_A VIRB4 ATPase, type IV s 91.7 0.036 1.2E-06 37.3 0.3 31 29-59 36-69 (392)
322 2xb4_A Adenylate kinase; ATP-b 91.7 0.023 7.7E-07 35.6 -0.7 22 31-52 3-24 (223)
323 1vma_A Cell division protein F 91.7 0.0088 3E-07 40.0 -2.7 32 29-60 105-139 (306)
324 3bfn_A Kinesin-like protein KI 91.7 0.046 1.6E-06 38.1 0.8 34 14-47 78-118 (388)
325 3qks_A DNA double-strand break 91.7 0.03 1E-06 34.9 -0.1 20 29-48 24-43 (203)
326 1goj_A Kinesin, kinesin heavy 91.7 0.042 1.4E-06 37.7 0.5 34 14-47 60-100 (355)
327 2pez_A Bifunctional 3'-phospho 91.6 0.026 8.8E-07 33.8 -0.5 23 29-51 6-28 (179)
328 3io5_A Recombination and repai 91.5 0.016 5.6E-07 39.8 -1.6 45 17-61 12-66 (333)
329 1ry6_A Internal kinesin; kines 91.5 0.034 1.2E-06 38.2 -0.0 17 31-47 88-104 (360)
330 2jeo_A Uridine-cytidine kinase 91.5 0.019 6.5E-07 36.4 -1.3 22 29-50 26-47 (245)
331 2dhr_A FTSH; AAA+ protein, hex 91.4 0.0087 3E-07 42.7 -3.1 30 29-58 65-94 (499)
332 2y65_A Kinesin, kinesin heavy 91.4 0.052 1.8E-06 37.4 0.8 35 13-47 63-104 (365)
333 1zu4_A FTSY; GTPase, signal re 91.4 0.0095 3.3E-07 40.0 -2.9 31 29-59 106-139 (320)
334 3m6a_A ATP-dependent protease 91.3 0.017 5.9E-07 41.1 -1.7 23 29-51 109-131 (543)
335 2j9r_A Thymidine kinase; TK1, 91.3 0.0079 2.7E-07 38.9 -3.2 34 29-62 29-65 (214)
336 2obl_A ESCN; ATPase, hydrolase 91.3 0.076 2.6E-06 36.0 1.5 32 16-47 59-90 (347)
337 3gbj_A KIF13B protein; kinesin 91.3 0.058 2E-06 36.9 0.9 19 29-47 94-112 (354)
338 3zq6_A Putative arsenical pump 91.3 0.01 3.6E-07 39.4 -2.7 32 29-60 15-49 (324)
339 2vvg_A Kinesin-2; motor protei 91.3 0.048 1.6E-06 37.4 0.5 33 14-47 69-109 (350)
340 1gtv_A TMK, thymidylate kinase 91.2 0.015 5.3E-07 35.4 -1.8 20 31-50 3-22 (214)
341 4a14_A Kinesin, kinesin-like p 91.1 0.054 1.9E-06 36.9 0.7 34 14-47 63-103 (344)
342 3tif_A Uncharacterized ABC tra 91.1 0.047 1.6E-06 34.9 0.3 17 29-45 32-48 (235)
343 1z6t_A APAF-1, apoptotic prote 91.1 0.059 2E-06 37.7 0.8 43 9-51 126-170 (591)
344 2v3c_C SRP54, signal recogniti 91.0 0.012 4E-07 41.2 -2.8 32 29-60 100-134 (432)
345 2pcj_A ABC transporter, lipopr 91.0 0.063 2.1E-06 34.0 0.8 17 29-45 31-47 (224)
346 1m7g_A Adenylylsulfate kinase; 90.9 0.053 1.8E-06 33.4 0.4 23 29-51 26-48 (211)
347 2px0_A Flagellar biosynthesis 90.8 0.037 1.3E-06 36.6 -0.4 32 29-60 106-141 (296)
348 3lda_A DNA repair protein RAD5 90.8 0.033 1.1E-06 38.6 -0.7 33 17-49 165-199 (400)
349 2r2a_A Uncharacterized protein 90.8 0.028 9.7E-07 35.4 -0.9 19 30-48 7-25 (199)
350 1v8k_A Kinesin-like protein KI 90.7 0.07 2.4E-06 37.4 0.9 33 14-47 134-174 (410)
351 3lre_A Kinesin-like protein KI 90.7 0.057 2E-06 37.0 0.4 33 14-47 85-125 (355)
352 1vht_A Dephospho-COA kinase; s 90.6 0.03 1E-06 34.5 -1.0 21 29-49 5-25 (218)
353 2r8r_A Sensor protein; KDPD, P 90.5 0.0098 3.4E-07 38.8 -3.3 30 29-58 7-39 (228)
354 1q57_A DNA primase/helicase; d 90.5 0.016 5.5E-07 40.5 -2.5 43 18-60 231-278 (503)
355 2nr8_A Kinesin-like protein KI 90.5 0.078 2.7E-06 36.4 1.0 34 14-47 83-123 (358)
356 1e69_A Chromosome segregation 90.4 0.054 1.8E-06 35.8 0.1 20 29-48 25-44 (322)
357 3dc4_A Kinesin-like protein NO 90.4 0.053 1.8E-06 37.1 0.1 32 14-46 74-113 (344)
358 3nwj_A ATSK2; P loop, shikimat 90.3 0.035 1.2E-06 36.1 -0.8 22 29-50 49-70 (250)
359 3ake_A Cytidylate kinase; CMP 90.3 0.031 1E-06 33.8 -1.1 21 30-50 4-24 (208)
360 1uj2_A Uridine-cytidine kinase 90.3 0.032 1.1E-06 35.4 -1.1 23 30-52 24-46 (252)
361 1mv5_A LMRA, multidrug resista 90.2 0.069 2.4E-06 34.1 0.5 18 29-46 29-46 (243)
362 2heh_A KIF2C protein; kinesin, 90.2 0.064 2.2E-06 37.3 0.4 33 14-47 114-154 (387)
363 3vkg_A Dynein heavy chain, cyt 90.2 0.03 1E-06 47.5 -1.5 28 18-47 1296-1323(3245)
364 1tq4_A IIGP1, interferon-induc 90.2 0.13 4.5E-06 35.8 1.9 19 30-48 71-89 (413)
365 3th5_A RAS-related C3 botulinu 89.6 0.055 1.9E-06 32.6 0.0 42 8-50 11-52 (204)
366 2wbe_C Bipolar kinesin KRP-130 90.1 0.062 2.1E-06 37.1 0.3 34 14-47 80-120 (373)
367 2cbz_A Multidrug resistance-as 90.1 0.065 2.2E-06 34.2 0.3 18 29-46 32-49 (237)
368 3hjh_A Transcription-repair-co 90.1 0.015 5E-07 41.4 -3.0 35 29-63 15-49 (483)
369 2f6r_A COA synthase, bifunctio 90.0 0.045 1.5E-06 35.7 -0.5 21 29-49 76-96 (281)
370 3gfo_A Cobalt import ATP-bindi 90.0 0.07 2.4E-06 35.1 0.4 18 29-46 35-52 (275)
371 3aez_A Pantothenate kinase; tr 89.9 0.047 1.6E-06 36.4 -0.5 21 29-49 91-111 (312)
372 3cob_A Kinesin heavy chain-lik 89.9 0.095 3.3E-06 36.2 1.0 32 14-46 60-98 (369)
373 3pxi_A Negative regulator of g 89.9 0.045 1.5E-06 40.0 -0.7 22 30-51 523-544 (758)
374 1g6h_A High-affinity branched- 89.8 0.071 2.4E-06 34.4 0.3 18 29-46 34-51 (257)
375 1odf_A YGR205W, hypothetical 3 89.8 0.036 1.2E-06 36.6 -1.1 24 29-52 32-55 (290)
376 4g1u_C Hemin import ATP-bindin 89.7 0.076 2.6E-06 34.6 0.4 18 29-46 38-55 (266)
377 2zfi_A Kinesin-like protein KI 89.7 0.071 2.4E-06 36.7 0.2 33 14-47 69-109 (366)
378 3cf2_A TER ATPase, transitiona 89.6 0.013 4.4E-07 44.2 -3.7 29 29-57 512-540 (806)
379 3b9q_A Chloroplast SRP recepto 89.6 0.081 2.8E-06 35.1 0.5 31 29-59 101-134 (302)
380 2dpy_A FLII, flagellum-specifi 89.6 0.17 5.8E-06 35.3 2.1 31 16-46 145-175 (438)
381 1moz_A ARL1, ADP-ribosylation 89.6 0.26 8.9E-06 28.7 2.7 30 20-49 10-39 (183)
382 3r20_A Cytidylate kinase; stru 89.6 0.041 1.4E-06 35.6 -0.9 22 29-50 10-31 (233)
383 3cmu_A Protein RECA, recombina 89.6 0.033 1.1E-06 45.7 -1.7 45 17-61 1413-1463(2050)
384 2pze_A Cystic fibrosis transme 89.6 0.08 2.8E-06 33.6 0.4 18 29-46 35-52 (229)
385 3t0q_A AGR253WP; kinesin, alph 89.5 0.089 3E-06 35.9 0.6 17 30-46 88-104 (349)
386 1b0u_A Histidine permease; ABC 89.4 0.083 2.8E-06 34.3 0.4 18 29-46 33-50 (262)
387 1f9v_A Kinesin-like protein KA 89.3 0.09 3.1E-06 35.9 0.6 32 14-46 65-103 (347)
388 1qvr_A CLPB protein; coiled co 89.3 0.014 4.9E-07 43.3 -3.6 24 29-52 589-612 (854)
389 1ji0_A ABC transporter; ATP bi 89.3 0.082 2.8E-06 33.8 0.3 18 29-46 33-50 (240)
390 1sgw_A Putative ABC transporte 89.3 0.083 2.8E-06 33.5 0.3 18 29-46 36-53 (214)
391 2ghi_A Transport protein; mult 89.2 0.083 2.8E-06 34.2 0.3 18 29-46 47-64 (260)
392 2ff7_A Alpha-hemolysin translo 89.2 0.084 2.9E-06 34.0 0.3 18 29-46 36-53 (247)
393 1j8m_F SRP54, signal recogniti 89.1 0.021 7.3E-07 37.9 -2.6 31 30-60 100-133 (297)
394 1nij_A Hypothetical protein YJ 89.1 0.03 1E-06 37.1 -1.9 33 30-62 6-39 (318)
395 3sop_A Neuronal-specific septi 89.1 0.1 3.4E-06 34.1 0.6 17 30-46 4-20 (270)
396 1a7j_A Phosphoribulokinase; tr 89.0 0.051 1.7E-06 35.8 -0.8 22 30-51 7-28 (290)
397 1svm_A Large T antigen; AAA+ f 89.0 0.1 3.6E-06 35.9 0.7 28 29-56 170-197 (377)
398 4etp_A Kinesin-like protein KA 89.0 0.1 3.4E-06 36.4 0.6 18 29-46 142-159 (403)
399 2v9p_A Replication protein E1; 89.0 0.086 3E-06 35.4 0.2 31 28-58 126-156 (305)
400 1rj9_A FTSY, signal recognitio 88.9 0.091 3.1E-06 34.9 0.4 22 29-50 103-124 (304)
401 2qi9_C Vitamin B12 import ATP- 88.9 0.095 3.2E-06 33.9 0.4 17 29-45 27-43 (249)
402 2owm_A Nckin3-434, related to 88.9 0.094 3.2E-06 37.0 0.4 33 14-47 116-156 (443)
403 2nq2_C Hypothetical ABC transp 88.9 0.096 3.3E-06 33.8 0.4 18 29-46 32-49 (253)
404 2i3b_A HCR-ntpase, human cance 88.9 0.082 2.8E-06 32.8 0.1 18 29-46 2-19 (189)
405 1htw_A HI0065; nucleotide-bind 88.8 0.098 3.3E-06 31.6 0.4 18 29-46 34-51 (158)
406 2ga8_A Hypothetical 39.9 kDa p 88.8 0.099 3.4E-06 36.1 0.4 21 29-49 25-45 (359)
407 1vpl_A ABC transporter, ATP-bi 88.7 0.1 3.4E-06 33.9 0.4 18 29-46 42-59 (256)
408 2olj_A Amino acid ABC transpor 88.7 0.1 3.4E-06 34.1 0.4 18 29-46 51-68 (263)
409 2zu0_C Probable ATP-dependent 88.7 0.1 3.5E-06 33.9 0.4 17 29-45 47-63 (267)
410 2ihy_A ABC transporter, ATP-bi 88.6 0.1 3.5E-06 34.3 0.4 18 29-46 48-65 (279)
411 2yz2_A Putative ABC transporte 88.6 0.097 3.3E-06 34.0 0.3 18 29-46 34-51 (266)
412 2xxa_A Signal recognition part 88.6 0.025 8.5E-07 39.5 -2.7 32 29-60 101-136 (433)
413 3zvl_A Bifunctional polynucleo 88.6 0.052 1.8E-06 37.3 -1.1 22 29-50 259-280 (416)
414 3tqc_A Pantothenate kinase; bi 88.5 0.051 1.7E-06 36.7 -1.1 20 30-49 94-113 (321)
415 2d2e_A SUFC protein; ABC-ATPas 88.5 0.099 3.4E-06 33.6 0.3 18 29-46 30-47 (250)
416 3u4q_B ATP-dependent helicase/ 88.4 0.025 8.7E-07 43.2 -2.9 34 31-64 4-43 (1166)
417 2rep_A Kinesin-like protein KI 88.3 0.12 4.2E-06 35.7 0.7 33 14-47 96-135 (376)
418 2onk_A Molybdate/tungstate ABC 88.3 0.1 3.5E-06 33.5 0.3 18 29-46 25-42 (240)
419 3e70_C DPA, signal recognition 88.3 0.17 5.9E-06 34.0 1.4 23 28-50 129-151 (328)
420 2ixe_A Antigen peptide transpo 88.2 0.11 3.6E-06 33.9 0.3 18 29-46 46-63 (271)
421 2h58_A Kinesin-like protein KI 88.1 0.092 3.1E-06 35.6 -0.1 19 29-47 82-100 (330)
422 1yqt_A RNAse L inhibitor; ATP- 88.0 0.065 2.2E-06 38.2 -0.9 18 29-46 48-65 (538)
423 2f1r_A Molybdopterin-guanine d 87.8 0.032 1.1E-06 34.3 -2.3 21 30-50 4-24 (171)
424 2og2_A Putative signal recogni 87.6 0.15 5.1E-06 34.9 0.8 31 29-59 158-191 (359)
425 1w4r_A Thymidine kinase; type 87.6 0.031 1E-06 35.7 -2.5 34 29-62 21-57 (195)
426 2bbs_A Cystic fibrosis transme 87.5 0.15 5.2E-06 33.7 0.7 18 29-46 65-82 (290)
427 1lw7_A Transcriptional regulat 87.4 0.065 2.2E-06 35.9 -1.1 20 29-48 171-190 (365)
428 1pui_A ENGB, probable GTP-bind 87.4 0.18 6.1E-06 30.3 0.9 27 23-49 21-47 (210)
429 2woo_A ATPase GET3; tail-ancho 87.4 0.029 9.9E-07 37.4 -2.9 31 29-59 20-53 (329)
430 1ls1_A Signal recognition part 87.4 0.028 9.5E-07 37.1 -2.9 32 29-60 99-133 (295)
431 2ph1_A Nucleotide-binding prot 87.3 0.041 1.4E-06 35.1 -2.1 47 12-59 4-53 (262)
432 1q3t_A Cytidylate kinase; nucl 87.3 0.081 2.8E-06 33.1 -0.7 22 29-50 17-38 (236)
433 2h92_A Cytidylate kinase; ross 87.2 0.072 2.4E-06 32.6 -0.9 21 30-50 5-25 (219)
434 2yv5_A YJEQ protein; hydrolase 87.1 0.14 4.8E-06 33.7 0.4 21 29-49 166-186 (302)
435 2orv_A Thymidine kinase; TP4A 87.1 0.029 9.8E-07 36.8 -2.9 34 29-62 20-56 (234)
436 3p32_A Probable GTPase RV1496/ 87.0 0.061 2.1E-06 36.1 -1.5 23 29-51 80-102 (355)
437 2pjz_A Hypothetical protein ST 86.9 0.14 4.8E-06 33.4 0.3 17 29-45 31-47 (263)
438 3ice_A Transcription terminati 86.9 0.15 5.2E-06 36.1 0.5 32 18-49 164-195 (422)
439 3fdi_A Uncharacterized protein 86.9 0.024 8.1E-07 35.4 -3.3 23 30-52 8-30 (201)
440 3cmw_A Protein RECA, recombina 86.6 0.06 2.1E-06 43.5 -1.9 46 16-61 19-70 (1706)
441 2fu5_C RAS-related protein RAB 86.6 0.23 7.9E-06 29.0 1.1 22 29-50 9-30 (183)
442 4eaq_A DTMP kinase, thymidylat 86.5 0.1 3.5E-06 33.1 -0.5 24 29-52 27-50 (229)
443 3b60_A Lipid A export ATP-bind 86.5 0.19 6.6E-06 35.8 0.9 21 28-48 369-389 (582)
444 3u06_A Protein claret segregat 86.5 0.12 4.2E-06 36.1 -0.2 19 29-47 140-158 (412)
445 3qf4_B Uncharacterized ABC tra 86.4 0.19 6.6E-06 36.0 0.8 20 28-47 381-400 (598)
446 3nh6_A ATP-binding cassette SU 86.4 0.082 2.8E-06 35.4 -1.1 21 28-48 80-100 (306)
447 2wsm_A Hydrogenase expression/ 86.4 0.26 8.8E-06 29.9 1.3 22 29-50 31-52 (221)
448 3iqw_A Tail-anchored protein t 86.3 0.033 1.1E-06 37.6 -3.0 31 29-59 17-50 (334)
449 2hf9_A Probable hydrogenase ni 86.3 0.28 9.5E-06 29.9 1.4 35 16-50 26-60 (226)
450 1g5t_A COB(I)alamin adenosyltr 86.3 0.036 1.2E-06 35.4 -2.8 31 29-59 29-62 (196)
451 4a82_A Cystic fibrosis transme 86.2 0.16 5.5E-06 36.2 0.3 21 28-48 367-387 (578)
452 1yrb_A ATP(GTP)binding protein 86.2 0.027 9.3E-07 35.3 -3.4 32 29-60 15-48 (262)
453 3e2i_A Thymidine kinase; Zn-bi 86.1 0.042 1.4E-06 35.7 -2.5 34 29-62 29-65 (219)
454 1ihu_A Arsenical pump-driving 86.1 0.044 1.5E-06 38.9 -2.6 31 29-59 9-42 (589)
455 4f4c_A Multidrug resistance pr 86.0 0.14 4.7E-06 40.1 -0.1 22 29-50 1106-1127(1321)
456 2j37_W Signal recognition part 86.0 0.043 1.5E-06 39.2 -2.8 33 29-61 102-137 (504)
457 2yl4_A ATP-binding cassette SU 85.9 0.21 7.2E-06 35.7 0.8 21 28-48 370-390 (595)
458 2ffh_A Protein (FFH); SRP54, s 85.7 0.041 1.4E-06 38.6 -2.9 32 29-60 99-133 (425)
459 3ug7_A Arsenical pump-driving 85.7 0.087 3E-06 35.4 -1.2 32 29-60 27-61 (349)
460 1xjc_A MOBB protein homolog; s 85.7 0.043 1.5E-06 34.0 -2.6 22 30-51 6-27 (169)
461 2ius_A DNA translocase FTSK; n 85.7 0.17 5.7E-06 36.3 0.2 20 29-48 168-187 (512)
462 3fvq_A Fe(3+) IONS import ATP- 85.6 0.22 7.5E-06 34.2 0.7 18 29-46 31-48 (359)
463 3cr8_A Sulfate adenylyltranfer 85.6 0.12 4E-06 37.3 -0.6 23 29-51 370-392 (552)
464 1w1w_A Structural maintenance 85.5 0.13 4.6E-06 35.1 -0.4 19 29-47 27-45 (430)
465 2gno_A DNA polymerase III, gam 85.4 0.16 5.5E-06 33.7 -0.0 36 15-50 2-40 (305)
466 1u0l_A Probable GTPase ENGC; p 85.3 0.15 5E-06 33.5 -0.3 20 29-48 170-189 (301)
467 3vkg_A Dynein heavy chain, cyt 85.2 0.21 7.3E-06 42.6 0.6 18 29-46 907-924 (3245)
468 3b5x_A Lipid A export ATP-bind 85.1 0.2 6.9E-06 35.7 0.4 21 28-48 369-389 (582)
469 3cmw_A Protein RECA, recombina 84.9 0.082 2.8E-06 42.8 -1.8 44 17-60 369-418 (1706)
470 1tf7_A KAIC; homohexamer, hexa 84.8 0.13 4.4E-06 36.2 -0.7 43 19-61 270-317 (525)
471 4h1g_A Maltose binding protein 84.8 0.19 6.5E-06 36.8 0.1 27 19-46 455-481 (715)
472 3bk7_A ABC transporter ATP-bin 84.7 0.11 3.9E-06 37.6 -1.1 18 29-46 118-135 (607)
473 2npi_A Protein CLP1; CLP1-PCF1 84.5 0.25 8.5E-06 34.7 0.6 18 29-46 139-156 (460)
474 4aby_A DNA repair protein RECN 84.5 0.054 1.9E-06 36.4 -2.7 17 29-45 61-77 (415)
475 2oze_A ORF delta'; para, walke 84.5 0.039 1.3E-06 35.5 -3.3 24 36-59 45-71 (298)
476 3tqf_A HPR(Ser) kinase; transf 84.5 0.077 2.6E-06 33.7 -1.8 23 29-51 17-39 (181)
477 1z47_A CYSA, putative ABC-tran 84.4 0.22 7.5E-06 34.0 0.3 18 29-46 42-59 (355)
478 2vp4_A Deoxynucleoside kinase; 84.3 0.23 8E-06 31.0 0.4 21 29-49 21-41 (230)
479 2it1_A 362AA long hypothetical 84.3 0.24 8.1E-06 33.9 0.4 18 29-46 30-47 (362)
480 2yyz_A Sugar ABC transporter, 84.2 0.23 7.8E-06 34.0 0.3 18 29-46 30-47 (359)
481 2o5v_A DNA replication and rep 84.1 0.19 6.5E-06 34.3 -0.1 19 29-47 27-45 (359)
482 3l0o_A Transcription terminati 84.0 0.15 5.1E-06 36.2 -0.7 34 17-50 164-197 (427)
483 1tf7_A KAIC; homohexamer, hexa 84.0 0.28 9.5E-06 34.5 0.7 34 15-48 24-59 (525)
484 3qf4_A ABC transporter, ATP-bi 83.8 0.24 8.2E-06 35.5 0.3 21 28-48 369-389 (587)
485 2ce2_X GTPase HRAS; signaling 83.8 0.36 1.2E-05 27.2 1.0 19 30-48 5-23 (166)
486 3gd7_A Fusion complex of cysti 83.8 0.29 1E-05 33.8 0.7 17 29-45 48-64 (390)
487 2dyk_A GTP-binding protein; GT 83.8 0.33 1.1E-05 27.5 0.8 19 30-48 3-21 (161)
488 2yc2_C IFT27, small RAB-relate 83.8 0.26 8.8E-06 29.2 0.4 23 29-51 21-43 (208)
489 1g29_1 MALK, maltose transport 83.7 0.25 8.4E-06 33.9 0.3 17 29-45 30-46 (372)
490 3bs4_A Uncharacterized protein 83.7 0.075 2.6E-06 35.0 -2.2 44 17-60 8-56 (260)
491 3rlf_A Maltose/maltodextrin im 83.7 0.26 8.9E-06 34.1 0.4 18 29-46 30-47 (381)
492 1ypw_A Transitional endoplasmi 83.6 0.085 2.9E-06 39.3 -2.2 24 29-52 512-535 (806)
493 3cio_A ETK, tyrosine-protein k 83.5 0.12 4.1E-06 34.0 -1.3 30 30-59 106-139 (299)
494 1oix_A RAS-related protein RAB 83.5 0.39 1.3E-05 28.7 1.1 18 29-46 30-47 (191)
495 1byi_A Dethiobiotin synthase; 83.5 0.039 1.3E-06 33.9 -3.5 27 34-60 8-37 (224)
496 1v43_A Sugar-binding transport 83.5 0.27 9.2E-06 33.8 0.4 17 29-45 38-54 (372)
497 2ocp_A DGK, deoxyguanosine kin 83.1 0.23 7.9E-06 31.0 -0.0 24 29-52 3-26 (241)
498 3vr4_A V-type sodium ATPase ca 83.1 0.12 4.2E-06 38.0 -1.5 34 17-50 221-254 (600)
499 3gmt_A Adenylate kinase; ssgci 83.1 0.17 5.8E-06 32.8 -0.7 23 29-51 9-31 (230)
500 1g16_A RAS-related protein SEC 82.9 0.41 1.4E-05 27.2 1.0 20 29-48 4-23 (170)
No 1
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.39 E-value=1.3e-14 Score=93.98 Aligned_cols=59 Identities=31% Similarity=0.512 Sum_probs=51.4
Q ss_pred ccccceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 4 DLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 4 ~l~~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
++.+.+.+||||+++++.+++. +++++.+|||+|||.+++.++...+.+++|++|+..+
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L 145 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLAL 145 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHH
T ss_pred cccCCCCcCHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 4556789999999999999886 4699999999999999988887778999999999643
No 2
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.39 E-value=1.1e-14 Score=100.21 Aligned_cols=58 Identities=31% Similarity=0.536 Sum_probs=50.9
Q ss_pred cccceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 5 LKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 5 l~~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
+...+.|||||+++++++++. +++++.+|||+|||.+++.++...+.++||++|+..+
T Consensus 88 ~~~~~~l~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L 145 (472)
T 2fwr_A 88 FDAEISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLAL 145 (472)
T ss_dssp CCCCCCBCHHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHH
T ss_pred ccCCCCcCHHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHH
Confidence 345678999999999999987 4799999999999999988888888999999999643
No 3
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.31 E-value=1.8e-14 Score=89.40 Aligned_cols=56 Identities=30% Similarity=0.479 Sum_probs=47.5
Q ss_pred cceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE---------eeeeEEEeeccee
Q psy11637 7 PSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---------RKRALVLCNSGVV 65 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~---------~~~~lil~p~~~~ 65 (67)
..+.|||||+++++.+++. ++.++.+|||+|||++++.++... ..+++|++|+..+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L 94 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLL 94 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHH
T ss_pred CCCCchHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHH
Confidence 4678999999999999975 689999999999999998776542 5789999998653
No 4
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.28 E-value=6.5e-14 Score=91.20 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=47.3
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
..|||||+++++.++++ ++.++.+|||+|||.+++..+...+.+++|++|+..+
T Consensus 15 ~~l~~~Q~~~i~~i~~~---~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L 68 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQG---KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTREL 68 (337)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHhcC---CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHH
Confidence 36999999999999876 6899999999999999887777778899999999654
No 5
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.27 E-value=1.1e-13 Score=95.17 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=46.9
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE--------eeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------RKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~--------~~~~lil~p~~~~ 65 (67)
.++|||||.+++..++++ ++.++.+|||+|||++++.++... +.++||++|+..+
T Consensus 2 ~~~~~~~Q~~~i~~~~~~---~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 64 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKG---KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPV 64 (555)
T ss_dssp CCCCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHH
T ss_pred CCCCcHHHHHHHHHHhCC---CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHH
Confidence 468999999999999876 689999999999999987766543 6789999999643
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.26 E-value=8.2e-14 Score=93.14 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=48.1
Q ss_pred ccceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEeeccee
Q psy11637 6 KPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVV 65 (67)
Q Consensus 6 ~~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~p~~~~ 65 (67)
+..++|||||+++++.++++ ++++.+|||+|||++++.++... +.++||++|+..+
T Consensus 5 ~~~~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L 64 (494)
T 1wp9_A 5 RDLIQPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPL 64 (494)
T ss_dssp HHHHCCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHH
T ss_pred cCCCCccHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 35689999999999998875 88999999999999998877654 7899999998643
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.26 E-value=1.3e-13 Score=95.22 Aligned_cols=56 Identities=21% Similarity=0.410 Sum_probs=44.9
Q ss_pred cceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE--------eeeeEEEeeccee
Q psy11637 7 PSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------RKRALVLCNSGVV 65 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~--------~~~~lil~p~~~~ 65 (67)
..++|||||++++..++++ ++.++.+|||+|||++++.++... +.++||++|+..+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~---~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 67 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAING---KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 67 (556)
T ss_dssp ----CCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHH
Confidence 4578999999999999986 689999999999999987766543 6789999999643
No 8
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.22 E-value=2.2e-13 Score=85.64 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=43.7
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE------eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV------RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~------~~~~lil~p~~~~ 65 (67)
.+||||++++..++++ ++.++.+|||+|||.+++..+... +.++||++|+..+
T Consensus 36 ~~~~~Q~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 36 HPSEVQHECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 94 (220)
T ss_dssp CCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHH
Confidence 4999999999999986 589999999999999886555432 3489999999653
No 9
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.22 E-value=2.6e-13 Score=84.23 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=43.2
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
.+||||+++++.++++ ++.++.+|||+|||.+++..+.. .+.+++|++|+..+
T Consensus 25 ~~~~~Q~~~i~~~~~~---~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 83 (206)
T 1vec_A 25 KPSPIQEESIPIALSG---RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTREL 83 (206)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHHccC---CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHH
Confidence 7999999999999986 68999999999999887644332 13579999999653
No 10
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.21 E-value=1.6e-13 Score=89.63 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=45.3
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~p~~~~ 65 (67)
+++||||+++++.++++ +++++.+|||+|||.+++.++... .+++||++|+..+
T Consensus 112 ~~l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L 169 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTAL 169 (282)
T ss_dssp CCCCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHH
T ss_pred cCccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 58999999999999886 578999999999999997766542 3499999999653
No 11
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.21 E-value=2.9e-13 Score=85.57 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=43.3
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------------~~~~~lil~p~~~~ 65 (67)
.+||+|++++..++++ ++.++.+|||+|||.+++..+.. .+.+++|++|+..+
T Consensus 42 ~~~~~Q~~~i~~~~~~---~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L 106 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQG---IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTREL 106 (228)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHH
Confidence 7999999999999876 68999999999999987543221 35679999999754
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.21 E-value=4e-13 Score=84.46 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=42.9
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE-E-----EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-T-----VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~-~-----~~~~~lil~p~~~~ 65 (67)
.+||||++++..++++ ++.++.+|||+|||.+++..+. . .+.++||++|+..+
T Consensus 36 ~~~~~Q~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 94 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTREL 94 (224)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHH
T ss_pred CCcHHHHHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHH
Confidence 6899999999999986 6899999999999988643332 1 24589999999654
No 13
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.20 E-value=2.9e-13 Score=83.90 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=43.5
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---------~~~~~lil~p~~~~ 65 (67)
..+||||+++++.++++ ++.++.+|||+|||.+++..+.. .+.+++|++|+..+
T Consensus 22 ~~~~~~Q~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L 84 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTREL 84 (207)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHH
Confidence 37899999999999986 68999999999999986543322 24579999999653
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.20 E-value=4e-13 Score=93.21 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=46.6
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~p~~~~ 65 (67)
.++|||||+++++.+++. +++++.+|||+|||.+++.++.. .++++||++|++.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L 169 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTAL 169 (510)
T ss_dssp EECCCHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHH
T ss_pred CCCCCHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHH
Confidence 569999999999999975 68999999999999999776654 23499999999653
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.19 E-value=1.2e-12 Score=92.79 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=41.8
Q ss_pred ccceeeccchhhHHHHHhcC--CcceeeeEEEeCCCCceeEeeeeEEE------------EeeeeEEEeecceee
Q psy11637 6 KPSAVLRPYQEKSLRKMFGN--GRARSGVIVLPCGAGKSLVGVTACCT------------VRKRALVLCNSGVVF 66 (67)
Q Consensus 6 ~~~~~lR~yQ~~av~~~~~~--~~~~~~~i~~pTGsGKT~i~~~~~~~------------~~~~~lil~p~~~~v 66 (67)
...+.|||||.++++++++. ...++.++.+|||+|||.+++.++.. ...++||++|+..++
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~ 248 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLV 248 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHH
Confidence 34568999999999998752 11257899999999999998777654 247899999987653
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.18 E-value=4.4e-13 Score=89.09 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=43.6
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE------eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV------RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~------~~~~lil~p~~~~ 65 (67)
.|||||++++..++++ ++.++.+|||+|||.+++..+... +.++||++|+..+
T Consensus 30 ~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L 88 (391)
T 1xti_A 30 HPSEVQHECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 88 (391)
T ss_dssp SCCHHHHHHHHHHTTT---CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhcC---CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHH
Confidence 4999999999999986 689999999999999886544432 4589999999654
No 17
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.17 E-value=2.5e-13 Score=85.63 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=44.0
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
..+||+|+++++.++++ ++.++.+|||+|||.+++..+.. .+.+++|++|+..+
T Consensus 25 ~~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 84 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRG---ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 84 (219)
T ss_dssp CSCCHHHHHHHHHHHHT---CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHH
Confidence 46899999999999986 68999999999999987554432 24589999999754
No 18
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.17 E-value=3.3e-13 Score=96.46 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=46.1
Q ss_pred cceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE-----e----eeeEEEeeccee
Q psy11637 7 PSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV-----R----KRALVLCNSGVV 65 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~-----~----~~~lil~p~~~~ 65 (67)
..+.|||||+++++.++++ ++.++.+|||+|||++++.++... . +++||++|+..+
T Consensus 4 ~~~~l~~~Q~~~i~~il~g---~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L 68 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEG---KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLL 68 (699)
T ss_dssp ---CCCHHHHHHHHHHHSS---CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHH
T ss_pred CCCCccHHHHHHHHHHHhC---CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHH
Confidence 4689999999999999985 689999999999999998777542 2 789999999754
No 19
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.16 E-value=7.9e-13 Score=96.91 Aligned_cols=55 Identities=22% Similarity=0.420 Sum_probs=46.2
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE--------eeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------RKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~--------~~~~lil~p~~~~ 65 (67)
...|||||++++..++++ ++.++.+|||+|||++++.++... ++++||++|+..+
T Consensus 246 ~~~l~~~Q~~~i~~~l~~---~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L 308 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING---KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 308 (797)
T ss_dssp --CCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHH
T ss_pred CCCCCHHHHHHHHHHHhC---CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHH
Confidence 568999999999999876 689999999999999988776553 7799999998643
No 20
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.15 E-value=7.9e-13 Score=84.33 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=42.9
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-------~~~~~lil~p~~~~ 65 (67)
.+||+|++++..++++ ++.++.+|||+|||.+++..+.. .+.+++|++|+..+
T Consensus 51 ~~~~~Q~~~i~~~~~~---~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L 110 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHG---RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTREL 110 (245)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHH
Confidence 5999999999999986 57999999999999987544422 23479999999754
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.15 E-value=7.1e-13 Score=86.95 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=44.4
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-----EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-----VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-----~~~~~lil~p~~~~ 65 (67)
.|||+|++++..+++.+ ++.++.+|||+|||.+++..+.. .+.+++|++|+..+
T Consensus 28 ~~~~~Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L 86 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTREL 86 (367)
T ss_dssp SCCHHHHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHH
Confidence 79999999999999764 58889999999999987655443 25689999999653
No 22
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.15 E-value=1.1e-12 Score=98.26 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=46.1
Q ss_pred cccceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE--------eeeeEEEeeccee
Q psy11637 5 LKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------RKRALVLCNSGVV 65 (67)
Q Consensus 5 l~~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~--------~~~~lil~p~~~~ 65 (67)
+...+.|||||.+++..++++ ++.++.+|||+|||++++.++... ++++||++|+..+
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g---~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L 308 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAING---KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 308 (936)
T ss_dssp -----CCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcC---CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHH
Confidence 344678999999999999876 689999999999999987776543 6789999998643
No 23
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.15 E-value=8.4e-13 Score=84.50 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=43.5
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-----------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-----------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-----------~~~~~lil~p~~~~ 65 (67)
.+||+|++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 51 ~~~~~Q~~~i~~~~~g---~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L 114 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSG---LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL 114 (242)
T ss_dssp SCCHHHHHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHH
Confidence 4899999999999876 68999999999999997654432 24579999999754
No 24
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.15 E-value=8.8e-13 Score=83.73 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=43.8
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----------~~~~~lil~p~~~~ 65 (67)
..+||+|++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 46 ~~~~~~Q~~~i~~~~~~---~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L 109 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQG---KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTREL 109 (236)
T ss_dssp CBCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHH
Confidence 37899999999999876 68999999999999987654332 24679999999653
No 25
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.15 E-value=1.5e-12 Score=93.77 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=46.5
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
.|||+|+++++.++++ ++.++++|||+|||++++..+....+++||++|+..+
T Consensus 44 ~~rp~Q~~~i~~il~g---~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L 96 (591)
T 2v1x_A 44 KFRPLQLETINVTMAG---KEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISL 96 (591)
T ss_dssp SCCTTHHHHHHHHHTT---CCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHH
T ss_pred CCCHHHHHHHHHHHcC---CCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHH
Confidence 7899999999999986 6899999999999998876666667899999998654
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.14 E-value=1.1e-12 Score=86.80 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=45.0
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
..+||+|++++..++++. +++.++.+|||+|||++++..+.. .+.++||++|+..+
T Consensus 26 ~~~~~~Q~~~i~~~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 87 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNP-PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSREL 87 (395)
T ss_dssp CSCCHHHHHHHHHHHCSS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHH
Confidence 478999999999998862 268999999999999987654432 25689999999754
No 27
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.12 E-value=2.5e-12 Score=82.52 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=43.6
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---------------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---------------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---------------~~~~~lil~p~~~~ 65 (67)
..+||+|++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 44 ~~~~~~Q~~~i~~i~~~---~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 112 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEH---RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTREL 112 (253)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHH
Confidence 36899999999999986 68999999999999987654432 12589999999653
No 28
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.11 E-value=1.5e-12 Score=87.03 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=43.5
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
.|||||+++++.++++ ++.++.+|||+|||.+++..+.. .+.+++|++|+..+
T Consensus 43 ~~~~~Q~~~i~~i~~~---~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 101 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITG---RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTREL 101 (400)
T ss_dssp SCCHHHHHHHHHHHHT---CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhcC---CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHH
Confidence 5999999999999976 57999999999999887654432 24589999999654
No 29
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.11 E-value=1.6e-12 Score=84.15 Aligned_cols=53 Identities=19% Similarity=0.087 Sum_probs=43.5
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
.+||||++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 65 ~~~~~Q~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L 123 (249)
T 3ber_A 65 KPTKIQIEAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTREL 123 (249)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHH
Confidence 7899999999999986 68999999999999987654432 13579999999754
No 30
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.10 E-value=2.4e-12 Score=81.88 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=42.6
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeE-EE-----EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC-CT-----VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~-~~-----~~~~~lil~p~~~~ 65 (67)
.+||||++++..++++ ++.++.+|||+|||.+++..+ .. .+.++||++|+..+
T Consensus 46 ~~~~~Q~~~i~~~~~~---~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 104 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCG---LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREI 104 (230)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHH
Confidence 4999999999998886 689999999999998865433 22 24689999999653
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.10 E-value=1.2e-12 Score=88.73 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=45.3
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
.++++|+|++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 19 ~~~~~~~Q~~~i~~i~~~---~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L 76 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQG---KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTL 76 (414)
T ss_dssp SSCCCHHHHHHHHHHTTT---CCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHH
T ss_pred CCCCCHHHHHHHHHHhcC---CCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHH
Confidence 467899999999999986 58999999999999966555443 36789999999754
No 32
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.10 E-value=9e-13 Score=84.29 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=43.2
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
.+||||++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 52 ~~~~~Q~~ai~~i~~~---~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 110 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKG---YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTREL 110 (237)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHH
Confidence 4999999999999986 68999999999999887544432 24689999999653
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.09 E-value=2.7e-12 Score=91.70 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=44.8
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE--------eeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------RKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~--------~~~~lil~p~~~~ 65 (67)
-..|||||+++++.++++ ++.++.+|||+|||++++.++... ++++||++|+..+
T Consensus 11 ~~~lr~~Q~~~i~~~l~g---~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L 73 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKG---KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 73 (696)
T ss_dssp --CCCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHH
T ss_pred CCCccHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHH
Confidence 468999999999999875 689999999999999987766532 1789999998643
No 34
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.09 E-value=2.4e-12 Score=86.06 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=44.1
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
..+||||++++..++++ ++.++.+|||+|||++++..+.. .+.+++|++|+..+
T Consensus 61 ~~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 120 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTREL 120 (414)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CCCCHHHHHHhHHHhCC---CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHH
Confidence 36899999999999986 57999999999999987554432 35689999999754
No 35
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.07 E-value=3.7e-12 Score=85.58 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=43.9
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
.+||+|++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 59 ~~~~~Q~~ai~~i~~~---~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L 117 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKG---RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTREL 117 (410)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHH
Confidence 4999999999999986 68999999999999887654432 35789999999753
No 36
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.07 E-value=2e-12 Score=84.21 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=43.7
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----------~~~~~lil~p~~~~ 65 (67)
.+||+|++++..++++ ++.++.+|||||||.+++..+.. .+.+++|++|+..+
T Consensus 76 ~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~L 138 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEG---RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTREL 138 (262)
T ss_dssp BCCHHHHHHHHHHHHT---CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC---CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHH
Confidence 4899999999999986 68999999999999987654432 25679999999754
No 37
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.06 E-value=1.5e-12 Score=86.49 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=43.7
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
..|||||++++..++++ ++.++.+|||+|||.+++..+.. .+.++||++|+..+
T Consensus 42 ~~~~~~Q~~~i~~i~~~---~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L 101 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTREL 101 (394)
T ss_dssp CSCCHHHHHHHHHHHHT---CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHH
Confidence 37999999999999986 68999999999999886543332 25689999999653
No 38
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.06 E-value=2.1e-12 Score=91.50 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=45.8
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
.+||+|+++++.++++ ++.++++|||+|||++++..+....++++|++|+..+
T Consensus 25 ~~r~~Q~~~i~~il~g---~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL 77 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSG---RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISL 77 (523)
T ss_dssp SCCTTHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHH
T ss_pred CCCHHHHHHHHHHHcC---CCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHH
Confidence 7899999999999986 6899999999999998876555567889999998654
No 39
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.04 E-value=4.9e-12 Score=88.80 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=44.3
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE------eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV------RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~------~~~~lil~p~~~~ 65 (67)
.+||+|+++++.+++++ +++.++.+|||||||.+++..+... +.++||++|+..+
T Consensus 141 ~p~~~Q~~ai~~i~~~~-~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNP-PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSREL 201 (508)
T ss_dssp ECCCTTSSSHHHHHCSS-CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHH
T ss_pred CcHHHHHHHHHHHHcCC-CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHH
Confidence 68999999999999862 2689999999999999876544321 4589999999754
No 40
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.04 E-value=7.1e-12 Score=83.58 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=44.0
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE------EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT------VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~------~~~~~lil~p~~~~ 65 (67)
..+||+|++++..++++. +++.++.+|||+|||++++..+.. ...+++|++|+..+
T Consensus 46 ~~~~~~Q~~~i~~~~~~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 107 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYEL 107 (412)
T ss_dssp CSCCHHHHHHHHHHHSSS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHhcCC-CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHH
Confidence 378999999999999852 268999999999999987544332 23489999999754
No 41
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.02 E-value=1e-11 Score=85.92 Aligned_cols=56 Identities=27% Similarity=0.274 Sum_probs=43.7
Q ss_pred ceeeccchhhHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE-----eeeeEEEeecc
Q psy11637 8 SAVLRPYQEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV-----RKRALVLCNSG 63 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~-----~~~~lil~p~~ 63 (67)
...|||||+++++.+... ..++++++..|||+|||+++++++... .+++||+||+.
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~ 96 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS 96 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH
Confidence 467999999999765421 112678899999999999998877653 36899999964
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.98 E-value=2.5e-11 Score=91.82 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=46.8
Q ss_pred cceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 7 PSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
..++|+|+|++++..++++ ++.++.+|||||||++++..+.. .+.+++|++|+..+
T Consensus 36 ~~f~l~~~Q~~aI~~il~g---~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraL 94 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQG---DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKAL 94 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTT---CEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred CCCCCCHHHHHHHHHHHcC---CCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 4578999999999999886 68999999999999987655543 25689999999765
No 43
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.95 E-value=1.9e-11 Score=85.60 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=43.3
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE----------eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----------RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~----------~~~~lil~p~~~~ 65 (67)
.|||+|++++..++... +++.++.+|||+|||.+++..+... ..++||++|+..+
T Consensus 94 ~~~~~Q~~~i~~~l~~~-~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSE-DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCCHHHHHHHHHHHSSS-SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhcCC-CCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 59999999999999531 2689999999999999876554431 2379999999754
No 44
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.93 E-value=2e-11 Score=81.81 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=42.8
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-E-----------------------eeeeEEEeecce
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-V-----------------------RKRALVLCNSGV 64 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-~-----------------------~~~~lil~p~~~ 64 (67)
..++|+|++++..++++ ++.++.+|||+|||.+++..+.. . ..++||++|+..
T Consensus 36 ~~~~~~Q~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEK---RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp CSCCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHccC---CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 37899999999998876 68999999999999877644321 1 146999999975
Q ss_pred e
Q psy11637 65 V 65 (67)
Q Consensus 65 ~ 65 (67)
+
T Consensus 113 L 113 (417)
T 2i4i_A 113 L 113 (417)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.93 E-value=4.1e-11 Score=88.26 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=45.3
Q ss_pred ceeeccchhhHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE------eeeeEEEeecce
Q psy11637 8 SAVLRPYQEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV------RKRALVLCNSGV 64 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~------~~~~lil~p~~~ 64 (67)
..+|||||.+++.+++.. ..++++++..+||+|||+++++++... .+++|||||...
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sl 297 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLST 297 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTT
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchH
Confidence 568999999999875521 122789999999999999998877543 678999999653
No 46
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.92 E-value=3.1e-11 Score=85.54 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=43.2
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE----------eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV----------RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~----------~~~~lil~p~~~~ 65 (67)
.|||+|++++..++... +++.++.+|||+|||.+++..+... ..++||++|+..+
T Consensus 43 ~~~~~Q~~~i~~il~~~-~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSE-DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCCHHHHHHHHHHHCSS-SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHHccC-CCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 59999999999999531 2688999999999999876554431 2379999999754
No 47
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.91 E-value=3.5e-11 Score=91.87 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=47.3
Q ss_pred cceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeeccee
Q psy11637 7 PSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVV 65 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~~~~ 65 (67)
..+.|+|+|++++..+.++ ++.++++|||||||+++..++... +++++|++|+..+
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g---~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraL 239 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRG---ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKAL 239 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTT---CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCCCHHHHHHHHHHHcC---CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence 3568999999999998775 689999999999999987666543 7899999999764
No 48
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.91 E-value=3.7e-11 Score=91.08 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=46.1
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
.+.|+|+|+++++.+.++ ++.++++|||||||+++..++.. .+.+++|++|+.++
T Consensus 84 ~f~L~~~Q~eai~~l~~g---~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaL 141 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRG---ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKAL 141 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHT---CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCCHHHHHHHHHHHcC---CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHH
Confidence 568999999999998876 68999999999999998655443 36799999999754
No 49
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.89 E-value=4.9e-11 Score=82.26 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=43.1
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-E-----eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-V-----RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-~-----~~~~lil~p~~~~ 65 (67)
.++|+|++++..+++.. +++.++.+|||||||.+++..+.. . ..++||++|+..+
T Consensus 114 ~p~~~Q~~ai~~il~~~-~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 174 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYEL 174 (479)
T ss_dssp SCCHHHHHHHHHHTSBS-CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHHcCC-CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHH
Confidence 67889999999999752 268999999999999987544432 1 2389999999754
No 50
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.88 E-value=4.5e-11 Score=82.31 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=42.9
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-E----------eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-V----------RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-~----------~~~~lil~p~~~~ 65 (67)
.++|+|++++..++++ ++.++.+|||||||.+++..+.. + +.++||++||..+
T Consensus 78 ~pt~iQ~~ai~~i~~g---~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreL 141 (434)
T 2db3_A 78 IPTPIQKCSIPVISSG---RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTREL 141 (434)
T ss_dssp SCCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhcC---CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHH
Confidence 5899999999999876 68999999999999987654322 1 3489999999754
No 51
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.87 E-value=1.4e-10 Score=88.39 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=45.2
Q ss_pred ceeeccchhhHHHHHhcC-----------CcceeeeEEEeCCCCceeEeeeeEEEE-----eeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGN-----------GRARSGVIVLPCGAGKSLVGVTACCTV-----RKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~-----------~~~~~~~i~~pTGsGKT~i~~~~~~~~-----~~~~lil~p~~~~ 65 (67)
...+||||.+|+++++++ ...+++++.+|||||||.+++.++..+ ..++||++|+..+
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL 342 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDL 342 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGC
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHH
Confidence 468999999999998752 012578999999999999986555432 2589999998754
No 52
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.87 E-value=6.9e-11 Score=83.99 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=42.4
Q ss_pred ceeeccchhhHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeecce
Q psy11637 8 SAVLRPYQEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGV 64 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~ 64 (67)
.+.+||+|+++++++.+. ..+++.++.+|||+|||..++..+...+.+++|++||..
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~ 62 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHS 62 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHH
Confidence 468999999998775532 112689999999999998877666666789999999864
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.85 E-value=1.1e-10 Score=87.88 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=45.9
Q ss_pred cceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE-----eeeeEEEeec
Q psy11637 7 PSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV-----RKRALVLCNS 62 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~-----~~~~lil~p~ 62 (67)
..+.|||||.++++++++.. ..++++.++||+|||++++.++... .+++||+||+
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~ 209 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE 209 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT
T ss_pred CCCCCcHHHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH
Confidence 46889999999999988753 2578888999999999998877653 3489999998
No 54
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.84 E-value=9.9e-11 Score=83.18 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=45.5
Q ss_pred eeeccchhhHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
+++||+|.++++++.+. ..+++.++.+|||+|||..++..+...+.+++|++||...
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l 59 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNE 59 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGG
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHH
Confidence 57999999988876542 1126899999999999999876666667899999999753
No 55
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.84 E-value=7.9e-11 Score=85.08 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=44.1
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~p~~~~ 65 (67)
.|+|+|.++++.++..+ ++.++++|||||||+++...+.+ .++++++++|+.++
T Consensus 30 ~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 89999999999954443 79999999999999999655432 36799999999754
No 56
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.84 E-value=3.7e-11 Score=86.85 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=44.4
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
.|+|+|+++++.++++ ++.++.+|||||||+++...+.+ .++++++++|+.++
T Consensus 25 ~l~~~Q~~~i~~i~~~---~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~L 80 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSG---KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRAL 80 (702)
T ss_dssp CCCCCCHHHHHHHTTC---SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHhCC---CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHH
Confidence 7999999999997764 68999999999999998655442 26799999999754
No 57
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.82 E-value=9.8e-11 Score=84.85 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=43.3
Q ss_pred eeccchhhHHHH-HhcCCcceeeeEEEeCCCCceeEeeeeEE-E---EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRK-MFGNGRARSGVIVLPCGAGKSLVGVTACC-T---VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~-~~~~~~~~~~~i~~pTGsGKT~i~~~~~~-~---~~~~~lil~p~~~~ 65 (67)
.|+|+|+++++. +.++ ++.++++|||||||+++...+. . .+++++|++|+.++
T Consensus 23 ~l~~~Q~~~i~~~~~~~---~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEG---KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp BCCHHHHHHHTTTGGGT---CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred CCCHHHHHHHHHHhcCC---CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 799999999998 5553 7899999999999999854433 2 36799999999765
No 58
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.79 E-value=1.6e-10 Score=88.34 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=46.2
Q ss_pred cceeeccchhhHHHHHhcC---CcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 7 PSAVLRPYQEKSLRKMFGN---GRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~---~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
..+++||+|+++++.+++. +...+.++++|||+|||.+++.++.. .+.+++|++||..+
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~L 664 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 664 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHH
Confidence 4567899999999998873 32248999999999999988644432 36799999999753
No 59
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.79 E-value=1.5e-10 Score=76.94 Aligned_cols=55 Identities=22% Similarity=0.173 Sum_probs=42.4
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE-EE-----eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC-TV-----RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~-~~-----~~~~lil~p~~~~ 65 (67)
.++|+|++++..++++. +++.++.+|||||||.+++..+. .. ..++||++||..+
T Consensus 114 ~pt~iQ~~ai~~il~~~-~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreL 174 (300)
T 3fmo_B 114 RPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYEL 174 (300)
T ss_dssp SCCHHHHHHHHHHTSSS-CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHHcCC-CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHH
Confidence 67889999999999752 26899999999999998753332 22 2379999999754
No 60
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.77 E-value=2e-10 Score=82.90 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=47.2
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeecceee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVVF 66 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~~~~v 66 (67)
..|-+.|++|+..++... .-.+|.+|+|+|||.+...++..+ +.++|+++||+.||
T Consensus 188 ~~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~Av 246 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAV 246 (646)
T ss_dssp TTCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred CCCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHH
Confidence 357889999999998753 478999999999999988777653 67999999999886
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.74 E-value=1.8e-10 Score=85.67 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=46.9
Q ss_pred ceeeccchhhHHHHHhcC---CcceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGN---GRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~---~~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~~~~ 65 (67)
.+.|+|+|+++++++++. +...+.++.+|||||||.+++..+... +.+++|++||..+
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~L 429 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL 429 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHH
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 458999999999998863 223588999999999999997766543 6799999999653
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.72 E-value=4.2e-10 Score=81.37 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=43.0
Q ss_pred eeeccchhhHHHHHhcC------CcceeeeEEEeCCCCceeEeeeeEEEE----------eeeeEEEeecc
Q psy11637 9 AVLRPYQEKSLRKMFGN------GRARSGVIVLPCGAGKSLVGVTACCTV----------RKRALVLCNSG 63 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~------~~~~~~~i~~pTGsGKT~i~~~~~~~~----------~~~~lil~p~~ 63 (67)
..|||||+++++.++.. .....+++..+||+|||+++++++... .+++|||+|+.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~s 124 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHH
Confidence 47999999999987531 123578899999999999998877542 24689999974
No 63
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.70 E-value=3.6e-10 Score=86.33 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=45.5
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
.++++|+|++++..++++ ++.++.+|||||||.+++.++.. .+.++||++||..+
T Consensus 76 gf~pt~iQ~~ai~~il~g---~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreL 133 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQG---KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTL 133 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTT---CCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHH
T ss_pred CCCCCHHHHHHHHHHHcC---CCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHH
Confidence 457999999999999986 68999999999999966555443 36789999999754
No 64
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.70 E-value=4.1e-10 Score=81.60 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=41.6
Q ss_pred eeeccchhhHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEeecce
Q psy11637 9 AVLRPYQEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGV 64 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~p~~~ 64 (67)
+++||+|+++++++.+. ..+++.++.+|||+|||+.++..+.. .+.+++|++||..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~ 62 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNS 62 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHH
Confidence 57899999999976543 12378999999999999988665443 2679999999864
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.55 E-value=2.7e-09 Score=84.39 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=44.9
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-----EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-----VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-----~~~~~lil~p~~~~ 65 (67)
.+.|.|.+++..++..+ ++.++.+|||||||+++..++.+ -++++++++|+.++
T Consensus 926 ~fnpiQ~q~~~~l~~~~--~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raL 984 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEAL 984 (1724)
T ss_dssp BCCHHHHHHHHHHHSCC--SCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHH
Confidence 47788999999999865 68999999999999999665543 25689999999764
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.53 E-value=3.3e-09 Score=83.95 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=44.3
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE--------------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT--------------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~--------------~~~~~lil~p~~~~ 65 (67)
.|.+.|.+++..+++.+ ++.++++|||||||+++...+.+ .+.++++++|+.++
T Consensus 79 ~ln~iQs~~~~~al~~~--~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kAL 146 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETD--ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSL 146 (1724)
T ss_dssp BCCHHHHHTHHHHHTCC--CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHH
T ss_pred CCCHHHHHHHHHHHcCC--CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHH
Confidence 57788999999988765 79999999999999998655432 14589999999765
No 67
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.48 E-value=3.5e-09 Score=80.40 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=41.8
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
+.+ |+|++++..++++ ++.++.+|||||||..++.++.. .+.++||++||..+
T Consensus 56 ~~p-~iQ~~ai~~il~g---~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreL 111 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILRK---ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLL 111 (1054)
T ss_dssp SCC-HHHHHHHHHHHTT---CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHH
T ss_pred CCH-HHHHHHHHHHHhC---CCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHH
Confidence 447 9999999999976 68999999999999743333332 25789999999754
No 68
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.38 E-value=1.4e-08 Score=73.24 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=45.4
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEeecceee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVVF 66 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~p~~~~v 66 (67)
..|.+.|.+|++.++.. ...+|.+|+|+|||.+...++.. .+.++++++||+.|+
T Consensus 179 ~~ln~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~ 237 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAV 237 (624)
T ss_dssp CCCCHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHH
T ss_pred CCCCHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHH
Confidence 46788999999998875 57889999999999988766553 356899999998774
No 69
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.36 E-value=1.8e-08 Score=64.30 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=40.6
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE--------eeeeEEEeecce
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV--------RKRALVLCNSGV 64 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~--------~~~~lil~p~~~ 64 (67)
...++++|++++..+.++ +..++.+|||||||+.+..++... ..++++++|+..
T Consensus 59 ~~p~~~~q~~~i~~i~~g---~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 120 (235)
T 3llm_A 59 LLPVKKFESEILEAISQN---SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRI 120 (235)
T ss_dssp TSGGGGGHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHH
T ss_pred cCChHHHHHHHHHHHhcC---CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchH
Confidence 356789999999999876 688999999999997554333221 237888888864
No 70
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.3e-08 Score=74.43 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=45.6
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEeecceee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVVF 66 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~p~~~~v 66 (67)
..|.+.|++|++.++.. ...+|.+|+|+|||.+...++.. .+.++|+++||+.|+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~---~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~ 417 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQR---PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAV 417 (802)
T ss_dssp CCCCHHHHHHHHHHTTC---SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHH
Confidence 46788999999999875 57899999999999988776653 257999999998774
No 71
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.23 E-value=1.4e-08 Score=74.75 Aligned_cols=53 Identities=19% Similarity=0.066 Sum_probs=39.2
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
.++++|+++++.+.++ ++.++.+|||||||..+...+.+.+.+++|++|+..+
T Consensus 217 P~~~~q~~i~~~L~~~---~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReL 269 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSF---QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAA 269 (666)
T ss_dssp CSCCCCCSCCCCCSSC---EEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHH
T ss_pred CcHHHHHHHHHHHHcC---CeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHH
Confidence 4455666666655544 6899999999999987765555556689999999753
No 72
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.23 E-value=5.3e-08 Score=72.55 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=45.4
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEeecceee
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVVF 66 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~p~~~~v 66 (67)
..|.+.|++|++.++.. ...+|.+|+|+|||.+...++.. .+.++++++||..|+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~ 413 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAV 413 (800)
T ss_dssp CCCCHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHH
T ss_pred cCCCHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHH
Confidence 46788999999998875 57889999999999988766554 357999999998764
No 73
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.10 E-value=5.3e-08 Score=71.37 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=37.6
Q ss_pred eeccchh-----hHHHHHhc---CCcceeeeEEEeCCCCceeEeeeeEE-E---EeeeeEEEeeccee
Q psy11637 10 VLRPYQE-----KSLRKMFG---NGRARSGVIVLPCGAGKSLVGVTACC-T---VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~-----~av~~~~~---~~~~~~~~i~~pTGsGKT~i~~~~~~-~---~~~~~lil~p~~~~ 65 (67)
.++|-|+ +++..++. -..+++.++.+|||||||++++..+. . .+.+++|++||..+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~L 282 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVV 282 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHH
Confidence 5777788 88877661 01127899999999999999743332 2 24689999999753
No 74
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.09 E-value=2.5e-07 Score=67.40 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=51.5
Q ss_pred ccccccceeeccchhhHHHHHhcC--CcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeecce
Q psy11637 2 TIDLKPSAVLRPYQEKSLRKMFGN--GRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGV 64 (67)
Q Consensus 2 ~~~l~~~~~lR~yQ~~av~~~~~~--~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~ 64 (67)
+|+|...++++.+|.++++++.+. ...+..++.+.||||||++++.++...++++|||+|+..
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~ 68 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKT 68 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHH
T ss_pred cceeecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHH
Confidence 578888999999999999987653 111346788999999999999888777889999999853
No 75
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.07 E-value=1.1e-07 Score=65.98 Aligned_cols=52 Identities=29% Similarity=0.296 Sum_probs=36.2
Q ss_pred eccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeE-EE---EeeeeEEEeeccee
Q psy11637 11 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC-CT---VRKRALVLCNSGVV 65 (67)
Q Consensus 11 lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~-~~---~~~~~lil~p~~~~ 65 (67)
..|-|+ ++..+++.+ +..++.+|||||||.+++..+ .. .+.+++|++||..+
T Consensus 5 ~~~iq~-~i~~~l~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~L 60 (451)
T 2jlq_A 5 GEPDYE-VDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVV 60 (451)
T ss_dssp CSCCCC-CCGGGGSTT--CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred CCCcHH-HHHHHHhcC--CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHH
Confidence 344554 677777764 466888999999999754333 22 35689999999753
No 76
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.04 E-value=1.5e-07 Score=65.07 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=29.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEE----EEeeeeEEEeeccee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC----TVRKRALVLCNSGVV 65 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~----~~~~~~lil~p~~~~ 65 (67)
++.++.+|||||||.+++..+. ..+.+++|++||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~L 43 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVV 43 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHH
Confidence 6889999999999999844332 235689999999753
No 77
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.03 E-value=1.3e-07 Score=65.93 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=31.8
Q ss_pred HHHhcCCcceeeeEEEeCCCCceeEeeeeEE-E---EeeeeEEEeeccee
Q psy11637 20 RKMFGNGRARSGVIVLPCGAGKSLVGVTACC-T---VRKRALVLCNSGVV 65 (67)
Q Consensus 20 ~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~-~---~~~~~lil~p~~~~ 65 (67)
.+++..+ ++.++.+|||||||.+++..+. . .+.++||++|+..+
T Consensus 15 ~~~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~L 62 (459)
T 2z83_A 15 PNMLRKR--QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVV 62 (459)
T ss_dssp CGGGSTT--CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHH
T ss_pred HHHHhcC--CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHH
Confidence 3345443 6899999999999999644332 2 35689999999753
No 78
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.94 E-value=1.6e-07 Score=65.13 Aligned_cols=37 Identities=32% Similarity=0.313 Sum_probs=28.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEeeccee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT----VRKRALVLCNSGVV 65 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~p~~~~ 65 (67)
++.++.+|||||||.+++..+.. .+.+++|++||..+
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~L 49 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVV 49 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHH
Confidence 78999999999999997443322 24589999999754
No 79
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.91 E-value=1.9e-07 Score=67.75 Aligned_cols=48 Identities=27% Similarity=0.224 Sum_probs=33.6
Q ss_pred hhhHHHHHhcCCcceeeeEEEeCCCCceeEeee-eEEE---EeeeeEEEeeccee
Q psy11637 15 QEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 15 Q~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~-~~~~---~~~~~lil~p~~~~ 65 (67)
|+.++..++++ ++.++.+|||||||.+++. ++.+ .+.++||++||..+
T Consensus 176 q~~~i~~l~~g---~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreL 227 (618)
T 2whx_A 176 YEVDEDIFRKK---RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVV 227 (618)
T ss_dssp CCCCGGGGSTT---CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred cccCHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHH
Confidence 33344444444 7899999999999998633 3332 25689999999753
No 80
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.91 E-value=3.5e-07 Score=65.91 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=44.6
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeeccee
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGVV 65 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~~ 65 (67)
.+.|-+.|+++++.++.. +..+|.+|+|+|||+++..++.. .+.++++++||..|
T Consensus 187 ~~~L~~~Q~~Av~~~~~~---~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~A 244 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKA 244 (574)
T ss_dssp TTTCCHHHHHHHHHHTTC---SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred cCCCCHHHHHHHHHHHhC---CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHH
Confidence 345778999999999875 68899999999999988766654 36789999998654
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.86 E-value=6.2e-07 Score=65.37 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=46.2
Q ss_pred ceeeccchhhHHHHHhcCC-c-ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeecce
Q psy11637 8 SAVLRPYQEKSLRKMFGNG-R-ARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGV 64 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~-~-~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~ 64 (67)
.+++++.|.++++++.+.- . .+..++.+.||||||++++.++...++++|||+|+..
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~ 64 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKI 64 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred CCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHH
Confidence 4589999999999877531 1 1246788999999999999888877889999999863
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.77 E-value=8.3e-07 Score=64.08 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=38.9
Q ss_pred cchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-------EeeeeEEEeeccee
Q psy11637 13 PYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-------VRKRALVLCNSGVV 65 (67)
Q Consensus 13 ~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-------~~~~~lil~p~~~~ 65 (67)
+.|++|+..++.+ +..++.+|+|+|||++...++.. .+.++++++||..|
T Consensus 152 ~~Q~~Ai~~~l~~---~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~A 208 (608)
T 1w36_D 152 NWQKVAAAVALTR---RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA 208 (608)
T ss_dssp CHHHHHHHHHHTB---SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHH
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhH
Confidence 5699999998865 68899999999999877554432 23489999998754
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.75 E-value=7.3e-07 Score=61.99 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=41.6
Q ss_pred eeccchhhHHHHHhcC--CcceeeeEEEeCCCCceeEeeeeEEEE---e-eeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGN--GRARSGVIVLPCGAGKSLVGVTACCTV---R-KRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~--~~~~~~~i~~pTGsGKT~i~~~~~~~~---~-~~~lil~p~~~~ 65 (67)
.|-+.|+++++.++.. ...+..+|.+|+|+|||+++..++..+ + .++++++||..|
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~A 86 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAA 86 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHH
Confidence 4666899999986542 111488999999999999887766553 2 378999998654
No 84
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.69 E-value=1.5e-06 Score=64.47 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=36.2
Q ss_pred ccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE----E--eeeeEEEeeccee
Q psy11637 12 RPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT----V--RKRALVLCNSGVV 65 (67)
Q Consensus 12 R~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~----~--~~~~lil~p~~~~ 65 (67)
-+.|++++..++..+ ++.++++|||||||+..-.++.. . +.++++++|+..+
T Consensus 95 ~~~q~~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~L 152 (773)
T 2xau_A 95 VHAQRDEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVA 152 (773)
T ss_dssp GGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHH
T ss_pred hHHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHH
Confidence 346888888877654 57899999999999943222221 1 3468999998654
No 85
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.68 E-value=2.1e-06 Score=63.11 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=26.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
++.++++|||||||..++..+.. .+..+|++|+..+
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~-~~~gl~l~PtR~L 191 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFS-AKSGVYCGPLKLL 191 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-SSSEEEEESSHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHh-cCCeEEEeCHHHH
Confidence 67899999999999954433322 2455999999754
No 86
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.47 E-value=3.9e-06 Score=59.55 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=38.7
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE-------eeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV-------RKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~-------~~~~lil~p~~~~ 65 (67)
.|-+.|++++.. . ++..+|.+++|||||.+...-+..+ ..++|++++|+.|
T Consensus 9 ~Ln~~Q~~av~~---~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~a 66 (647)
T 3lfu_A 9 SLNDKQREAVAA---P--RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKA 66 (647)
T ss_dssp TCCHHHHHHHTC---C--SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHH
T ss_pred cCCHHHHHHHhC---C--CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHH
Confidence 577889999972 1 2578999999999999886544321 2589999998764
No 87
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.24 E-value=2e-05 Score=59.58 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=37.8
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeecce
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGV 64 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~ 64 (67)
.+.|-|..++-.++++ + +..|+||+|||.+++..+.. .+..++|++||..
T Consensus 83 ~pt~VQ~~~ip~ll~G----~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptre 135 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDG----N-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEY 135 (844)
T ss_dssp CCCHHHHHHHHHHHTT----S-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHH
T ss_pred CCcHHHHHhhHHHhCC----C-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHH
Confidence 4445588888877764 3 88999999999998765542 3568999999864
No 88
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.13 E-value=0.0001 Score=43.56 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=26.7
Q ss_pred ccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 12 RPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 12 R~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
|+.+.+.+.+++..+.....++.+|+|+|||.++..++..
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3334444444554443467899999999999988666554
No 89
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.08 E-value=3.2e-05 Score=58.56 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=37.2
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeecce
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGV 64 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~ 64 (67)
.+.|-|..++-.++.+ + +..|+||+|||.+++..+.. .+..++|++||..
T Consensus 74 ~p~~VQ~~~i~~ll~G----~-Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTre 126 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNER----C-IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDY 126 (853)
T ss_dssp CCCHHHHHHHHHHHSS----E-EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHH
T ss_pred CCChHHHhhcccccCC----e-eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHH
Confidence 3444588888777764 3 88899999999988755432 3568999999964
No 90
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.06 E-value=3.8e-05 Score=58.52 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=36.2
Q ss_pred eccc--hhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeecce
Q psy11637 11 LRPY--QEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGV 64 (67)
Q Consensus 11 lR~y--Q~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~ 64 (67)
+||| |..++-.++.+ + +..|+||+|||++++..+.. .+..++|++||..
T Consensus 110 ~rP~~VQ~~~ip~Ll~G----~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTre 163 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLG----N-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDY 163 (922)
T ss_dssp CCCCHHHHHHHHHHHTT----E-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHH
T ss_pred CCCCHHHHHHHHhHhcC----C-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHH
Confidence 3554 77777766653 3 88999999999998755532 3668999999864
No 91
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.94 E-value=0.00012 Score=43.35 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=24.8
Q ss_pred hhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 15 QEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 15 Q~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+.+.+.+++......+.++.+|+|+|||.++..++..
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333444444433467889999999999988666554
No 92
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.75 E-value=0.00025 Score=42.75 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=26.2
Q ss_pred ccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 12 RPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 12 R~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
|+...+.+.++++.+...+.++.+|+|+|||.++..++.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 334445555666554334588999999999998765544
No 93
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.59 E-value=5.2e-05 Score=54.65 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=37.8
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-------~~~~~lil~p~~~~ 65 (67)
.|-|.|+++++.. . +..+|.++.|||||.+...-+.. ...++|+++.|+.|
T Consensus 2 ~L~~~Q~~av~~~--~---~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~A 59 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--T---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKA 59 (673)
T ss_dssp CCCHHHHHHHHCC--S---SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHH
T ss_pred CCCHHHHHHHhCC--C---CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHH
Confidence 4778899999852 2 57889999999999888653322 13578999888654
No 94
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.57 E-value=0.00071 Score=39.95 Aligned_cols=23 Identities=9% Similarity=-0.125 Sum_probs=18.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.+.++.+|+|+|||.++-.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 67889999999999988665543
No 95
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.52 E-value=9.8e-05 Score=56.66 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=37.7
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE---EEeeeeEEEeecce
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC---TVRKRALVLCNSGV 64 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~---~~~~~~lil~p~~~ 64 (67)
.+.|-|..++-.++.+ + +..|.||+|||++++..+. ..+..++|++||..
T Consensus 79 ~Pt~VQ~~~ip~LlqG---~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTre 131 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEG---K--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDY 131 (997)
T ss_dssp CCCHHHHHHHHHHHTT---S--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHH
T ss_pred CCcHHHHhhcccccCC---c--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHH
Confidence 3445588888877764 3 7889999999998866553 23568999999964
No 96
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.47 E-value=0.00014 Score=46.71 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=24.1
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
....++.+|+|+|||.++-+++...+.+.+.+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 46788899999999999877766555554443
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.44 E-value=0.00041 Score=41.93 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=26.6
Q ss_pred cchhhHHHHHh---cC---CcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 13 PYQEKSLRKMF---GN---GRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 13 ~yQ~~av~~~~---~~---~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+.|+++++... +. ..+...++.+|+|+|||+++..++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35777776643 22 12356778899999999988665543
No 98
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.42 E-value=0.00062 Score=41.84 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=24.2
Q ss_pred hhHHHH---HhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 16 EKSLRK---MFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 16 ~~av~~---~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+++++. +.........++.+|+|+|||.++..++..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 444443 443323467889999999999988666544
No 99
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.40 E-value=0.00016 Score=46.38 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=23.8
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
....++.+|+|+|||.++-+++...+.+.+.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 35688899999999999877766555554443
No 100
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.38 E-value=0.00024 Score=46.50 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=28.4
Q ss_pred ccchhhHHHHHhc----CCcceeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 12 RPYQEKSLRKMFG----NGRARSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 12 R~yQ~~av~~~~~----~~~~~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
|+.+.+.+.+++. .+.....+|.+|+|+|||.++-.++...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5556666666554 2234678889999999999887666543
No 101
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.34 E-value=0.00013 Score=48.88 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRAL 57 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~l 57 (67)
.+.++.+|+|+|||.++-+++...+.+.+
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~ 80 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFT 80 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 57889999999999998777665554444
No 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.30 E-value=0.00074 Score=39.89 Aligned_cols=23 Identities=9% Similarity=-0.181 Sum_probs=19.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.+.++.+|+|+|||.++-.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999998666544
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.27 E-value=0.00035 Score=42.89 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.5
Q ss_pred hHHHHHhcC--CcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEe
Q psy11637 17 KSLRKMFGN--GRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~--~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~ 60 (67)
..+++++.. ..+...+|.+|+|+|||+.+..++...+++++++.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 456777753 22357888999999999998766653345666654
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.26 E-value=0.00017 Score=52.72 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=37.8
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-------EeeeeEEEeeccee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-------VRKRALVLCNSGVV 65 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-------~~~~~lil~p~~~~ 65 (67)
.|-|.|++|+.. .+ +..+|.++.|||||.+...-+.. ...++|+++.|+.|
T Consensus 11 ~Ln~~Q~~av~~---~~--g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkA 68 (724)
T 1pjr_A 11 HLNKEQQEAVRT---TE--GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 (724)
T ss_dssp TSCHHHHHHHHC---CS--SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHH
T ss_pred hCCHHHHHHHhC---CC--CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHH
Confidence 578899999975 12 57889999999999987653322 13578999888654
No 105
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.24 E-value=0.00035 Score=43.46 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=29.7
Q ss_pred HHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEe
Q psy11637 18 SLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLC 60 (67)
Q Consensus 18 av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~ 60 (67)
.+++++..+ .+...+|.+|+|+|||..++.++.. .+++++++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456666532 2356788999999999998766543 245777664
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.00047 Score=45.56 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=26.8
Q ss_pred ccchhhHHHHHhc----CCcceeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 12 RPYQEKSLRKMFG----NGRARSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 12 R~yQ~~av~~~~~----~~~~~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
|+.+.+.+.+++. .+..+..+|.+|+|+|||.++..++...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4444444444442 3334578899999999999987666543
No 107
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.00025 Score=46.54 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=28.1
Q ss_pred ccchhhHHHHHhc----CCcceeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 12 RPYQEKSLRKMFG----NGRARSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 12 R~yQ~~av~~~~~----~~~~~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
|+.+.+.+..++. .+.....+|.+|+|+|||.++-.+....
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555655553 2234678888999999999987766554
No 108
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.21 E-value=0.0016 Score=45.40 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=27.3
Q ss_pred eccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 11 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 11 lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
+.+.+.+.++.++.. .++..+|.+|||||||++..+++.
T Consensus 151 ~~~~~~~~L~~l~~~-~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp CCHHHHHHHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHh
Confidence 344566677777642 235678899999999998765544
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.14 E-value=0.00011 Score=47.82 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=27.6
Q ss_pred HHHHhcCC-cceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEe
Q psy11637 19 LRKMFGNG-RARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60 (67)
Q Consensus 19 v~~~~~~~-~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~ 60 (67)
++.|++.- +....++.+|+|+|||..+.+++..+.++++-++
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa 90 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV 90 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 44555542 2234777899999999998887766555544333
No 110
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.05 E-value=0.00024 Score=48.81 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=21.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKR 55 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~ 55 (67)
...+|++|||+|||.++..++.+++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~e 67 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLE 67 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCc
Confidence 357788999999999998887766543
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.00065 Score=46.03 Aligned_cols=41 Identities=5% Similarity=-0.210 Sum_probs=29.3
Q ss_pred ccchhhHHHHHhc----CCcceeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 12 RPYQEKSLRKMFG----NGRARSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 12 R~yQ~~av~~~~~----~~~~~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
|+-|.+.+..++. .+...+.+|.+|+|+|||.++-.++..+
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5556666665443 3445788899999999999887766554
No 112
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.98 E-value=0.00095 Score=40.40 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=24.7
Q ss_pred ccchhhHHHHHhcCCc-ceeeeEEEeCCCCceeEeeeeEE
Q psy11637 12 RPYQEKSLRKMFGNGR-ARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 12 R~yQ~~av~~~~~~~~-~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
|+...+.+.+++..+. ....+|.+|+|+|||.++..++.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3334445555555432 23578899999999988755543
No 113
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.0017 Score=42.34 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=23.6
Q ss_pred hHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 17 KSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 17 ~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+.+..++..+...+.++.+|+|+|||.++-.++..
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33444555443245888999999999988665544
No 114
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.91 E-value=0.00035 Score=44.86 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=23.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
.+.++.+|+|+|||.++-.++...+.+.+.+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 5788999999999999876665555444433
No 115
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.90 E-value=0.00032 Score=46.12 Aligned_cols=31 Identities=16% Similarity=-0.018 Sum_probs=23.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
...++.+|+|+|||.++-+++...+.+++.+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4566779999999999987776665555544
No 116
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.84 E-value=0.00031 Score=44.30 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=22.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
...++.+|+|+|||.++-+++...+.+.+.+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4578899999999999877666555444443
No 117
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.00043 Score=48.78 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=26.1
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCN 61 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p 61 (67)
.+..++.+|+|+|||.++-+++.+.+.+++.+..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 4567888999999999998877776666555543
No 118
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.77 E-value=0.00057 Score=44.85 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=22.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRAL 57 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~l 57 (67)
.+.++.+|+|+|||.++-.+....+.+.+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 57889999999999998777655544433
No 119
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.77 E-value=0.002 Score=44.94 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=23.1
Q ss_pred HHHhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 20 RKMFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 20 ~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..++......+.++.+|+|+|||.++-.++..
T Consensus 193 ~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 193 IEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33444433468899999999999988666544
No 120
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.77 E-value=0.0024 Score=41.17 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=19.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.+.++.+|+|+|||.++-.++...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999986655443
No 121
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.00071 Score=47.68 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=23.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
+..++.+|+|+|||.++-.++...+.+++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 5688889999999999877766655555444
No 122
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.00052 Score=48.42 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=26.0
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCN 61 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p 61 (67)
.+..++.+|+|+|||.++-+++.+.+.+++.+..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 3567888999999999998887776666555543
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.68 E-value=0.00098 Score=41.40 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=25.3
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEE
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
..+++++..+ .+....|.+|+|+|||.++..++.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4567777542 235788899999999999876655
No 124
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.68 E-value=0.0016 Score=41.97 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=24.4
Q ss_pred hhhHHH---HHhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 15 QEKSLR---KMFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 15 Q~~av~---~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
|++.++ ++++.+...+.++.+|+|+|||.++-.++..
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 444444 4554433235888999999999988665543
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.63 E-value=0.0028 Score=42.13 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=30.2
Q ss_pred eccchhhHHHHHhc---CCc-ceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 11 LRPYQEKSLRKMFG---NGR-ARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 11 lR~yQ~~av~~~~~---~~~-~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+.|+|+++++.+.+ .+. .+.-++.+|+|+|||.++..++..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 57999999877553 332 345788999999999988666543
No 126
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.62 E-value=0.00078 Score=43.70 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=22.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRAL 57 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~l 57 (67)
...++.+|+|+|||.++-.+....+.+.+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57889999999999998776655444443
No 127
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.00058 Score=48.00 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=25.6
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCN 61 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p 61 (67)
.+..++.+|+|+|||.++-+++...+.+++.+..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3557888999999999998887766666555443
No 128
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.61 E-value=0.00068 Score=52.32 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=38.3
Q ss_pred cceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeee-eEE---E-----EeeeeEEEeeccee
Q psy11637 7 PSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT-ACC---T-----VRKRALVLCNSGVV 65 (67)
Q Consensus 7 ~~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~-~~~---~-----~~~~~lil~p~~~~ 65 (67)
....|-|-|++++..- + ++.+|.+..|||||.+... ++. . -..++|+++.|+.|
T Consensus 7 ~~~~~t~eQ~~~i~~~---~--~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVST---G--QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp ---CCCHHHHHHHHCC---S--SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCCHHHHHHHhCC---C--CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 3567888899998753 2 6889999999999998653 222 2 12578999998765
No 129
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.60 E-value=0.0018 Score=41.49 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=24.3
Q ss_pred hhhHHHH---HhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 15 QEKSLRK---MFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 15 Q~~av~~---~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
|.+.++. +++.+...+.++.+|+|+|||.++..++..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHH
Confidence 5555544 444433235889999999999888655443
No 130
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.59 E-value=0.0013 Score=43.73 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=31.6
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEEE---------eeeeEEEee
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCTV---------RKRALVLCN 61 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~~---------~~~~lil~p 61 (67)
..+++++..+ .+...+|.+|+|+|||.+++.++... +++++++.-
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 4567777532 23567889999999999998776542 457777753
No 131
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.59 E-value=0.00043 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=19.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRK 54 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~ 54 (67)
...++++++|||||+++-.+...++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35678899999999998766655443
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.59 E-value=0.0018 Score=42.58 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=26.7
Q ss_pred ccchhhHHHHHhcC----Ccce--eeeEEEeCCCCceeEeeeeEEEE
Q psy11637 12 RPYQEKSLRKMFGN----GRAR--SGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 12 R~yQ~~av~~~~~~----~~~~--~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
|+.+.+.+.+++.. ..+. ..+|.+|+|+|||.++-.+....
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44455555555532 2224 68899999999999886665543
No 133
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.59 E-value=0.00061 Score=42.35 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=30.6
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEE----EeeeeEEEe
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCT----VRKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~----~~~~~lil~ 60 (67)
..+|+.+.+| .+...+|.+++|+|||..++.++.. .+++++++.
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3456777643 2456888899999999998876543 245677664
No 134
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.57 E-value=0.0026 Score=40.85 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=24.7
Q ss_pred hhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 15 QEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 15 Q~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..+.+.++++.+...+.++.+|+|+|||.++..++..
T Consensus 29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444455665543234889999999999887665544
No 135
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.54 E-value=0.00039 Score=41.97 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=19.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|+|||||+++-.++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999987665543
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.54 E-value=0.00039 Score=44.95 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.5
Q ss_pred eeEEEeCCCCceeEeeeeEEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.+|.+|+|||||+++..++...
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 4678999999999987765543
No 137
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.53 E-value=0.0005 Score=43.68 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRAL 57 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~l 57 (67)
...++.+|+|+|||+++-+++...+.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 45788999999999988666554444443
No 138
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.00066 Score=47.63 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=25.7
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCN 61 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p 61 (67)
.+..++.+|+|+|||.++-+++.+.+.+++.+..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 3567888999999999998877766655555443
No 139
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.43 E-value=0.00062 Score=44.72 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=21.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRAL 57 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~l 57 (67)
...++.+|+|+|||+++-+++...+.+.+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~~~i 78 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQANFI 78 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence 56788999999999998766655444433
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.43 E-value=0.00061 Score=45.04 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=23.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
...++.+|+|+|||.++-+++...+.+.+.+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 4678899999999999877766555444433
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.39 E-value=0.0035 Score=39.90 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+|+|+|||.++-.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 67889999999999988665544
No 142
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.38 E-value=0.0016 Score=38.00 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=15.9
Q ss_pred eeeEEEeCCCCceeEeeee
Q psy11637 30 SGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~ 48 (67)
..++.+|+|||||+++-.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3568899999999998766
No 143
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.38 E-value=0.00073 Score=44.95 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.+.++.+|+|+|||.++.+++..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67888999999999998766553
No 144
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.38 E-value=0.0024 Score=38.95 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+|+|+|||+++.+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56888899999999988666554
No 145
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.37 E-value=0.0064 Score=38.47 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=24.4
Q ss_pred eeeccc-hhhHHHHHhcCCcceeeeEEEeCCCCceeEee
Q psy11637 9 AVLRPY-QEKSLRKMFGNGRARSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 9 ~~lR~y-Q~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~ 46 (67)
+.++.| |..+++.+-.. ....|.+|.|+|||+..-
T Consensus 5 i~pk~~g~~~~l~~i~~G---e~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTN---TIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHHHHC---SEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhccCC---CEEEEECCCCCCHHHHHH
Confidence 334444 66677776433 567789999999998763
No 146
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.36 E-value=0.0011 Score=44.64 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=23.5
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
....++.+|+|+|||.++-+++...+.+++.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 35688899999999999877665555454443
No 147
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.36 E-value=0.00096 Score=43.75 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=22.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil 59 (67)
...++.+|+|+|||+++-.++... +.+++++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i 71 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 568888999999999987666544 3444443
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.35 E-value=0.0027 Score=38.22 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=18.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
....+++|+|||||+++-.++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56778999999999988655443
No 149
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.33 E-value=0.0012 Score=44.75 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=23.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
.+.+|.+|+|+|||.++-+++...+.+++.+
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 5788999999999999877766555555444
No 150
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.29 E-value=0.0038 Score=45.66 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=25.5
Q ss_pred hhhHHHH---HhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 15 QEKSLRK---MFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 15 Q~~av~~---~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
|.+.+++ ++......+.++.+|+|+|||.++-.++..
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 4444444 444433468999999999999988666544
No 151
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.29 E-value=0.00066 Score=43.80 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=20.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRA 56 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~ 56 (67)
...++.+|+|+|||+++-+++...+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 5788899999999998866655444333
No 152
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=95.28 E-value=0.00094 Score=50.52 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=35.5
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeecce
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNSGV 64 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~~~ 64 (67)
.+|||-.+.+-.+.-+ ..-+.-|.||+|||+++...+.. .++.+.|++|+..
T Consensus 73 g~r~~dvQligg~~L~---~G~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndy 127 (822)
T 3jux_A 73 GMRPFDVQVMGGIALH---EGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDY 127 (822)
T ss_dssp SCCCCHHHHHHHHHHH---TTCEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHH
T ss_pred CCCCcHHHHHHHHHHh---CCChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHH
Confidence 4567755555553322 12377899999999998766542 3677999998864
No 153
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.25 E-value=0.00073 Score=46.15 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=19.9
Q ss_pred eeeEEEeCCCCceeEeeeeEEEEee
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTVRK 54 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~~~ 54 (67)
-.+|++|||+|||.++..++...+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCC
Confidence 4677899999999999887766543
No 154
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.25 E-value=0.0041 Score=38.50 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.7
Q ss_pred ceeeeEEEeCCCCceeEeeeeE
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
+....|.+|+|||||+++-.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3566788999999998874443
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.0032 Score=41.35 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=23.6
Q ss_pred hhhHHHH---Hh-cCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 15 QEKSLRK---MF-GNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 15 Q~~av~~---~~-~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
|+++++. ++ +.+...+.++.+|+|+|||+++-.++.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 5555544 44 333323488899999999998865544
No 156
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.19 E-value=0.00099 Score=41.32 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=25.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeec
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNS 62 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~ 62 (67)
.-.++.+|+|+|||+.++.++.+. +.+++++.|.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 356788999999999987766543 4567777654
No 157
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.14 E-value=0.00072 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=19.3
Q ss_pred eeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
-.+|++|||+|||.++..++...+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 456789999999999987776544
No 158
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.12 E-value=0.00087 Score=44.96 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=21.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRAL 57 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~l 57 (67)
.+.++.+|+|+|||.++-.++...+.+.+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46889999999999998766655544433
No 159
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.09 E-value=0.00087 Score=45.65 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=19.4
Q ss_pred eeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
..+|++|||+|||.++..++...+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 567889999999999877766544
No 160
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.07 E-value=0.0053 Score=44.71 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=23.7
Q ss_pred HHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 18 SLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 18 av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.+.+++......+.++.+|+|+|||.++-.++..
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3344444444468899999999999988655543
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.06 E-value=0.0028 Score=38.51 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=16.9
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
+..+|++|+|+|||+++-.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 467788999999999875544
No 162
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.01 E-value=0.0029 Score=42.51 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=31.5
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEE---------EeeeeEEEee
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCT---------VRKRALVLCN 61 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~---------~~~~~lil~p 61 (67)
..+++++..+ .+...+|.+|+|+|||..++.++.. .+++++++.-
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 3467777532 2456788899999999999876653 2567777753
No 163
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.98 E-value=0.00099 Score=44.92 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=22.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALV 58 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~li 58 (67)
+..++.+|+|+|||.++-+++...+.+.+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 457888999999999987666555444433
No 164
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.96 E-value=0.0021 Score=47.77 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=25.9
Q ss_pred hhhHHHH---HhcCCcceeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 15 QEKSLRK---MFGNGRARSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 15 Q~~av~~---~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
|.+.+++ ++..+...+.++++|+|+|||.++-.++...
T Consensus 175 r~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4444444 4434434678999999999999887666543
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.0012 Score=46.81 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=25.0
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEe
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~ 60 (67)
.+..++.+|+|+|||.++-+++.+.+.+++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 356788899999999999877776655555443
No 166
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.001 Score=47.55 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=24.9
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEe
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~ 60 (67)
.+..++.+|+|+|||.++-+++.+.+.+++.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 356778899999999999877776665555444
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.91 E-value=0.00077 Score=41.53 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++++|+|||||+++-.++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 57788999999999998666543
No 168
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.90 E-value=0.0028 Score=37.55 Aligned_cols=21 Identities=19% Similarity=-0.018 Sum_probs=16.9
Q ss_pred eeeEEEeCCCCceeEeeeeEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~ 50 (67)
..++.+|+|||||+++-.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 457889999999998866554
No 169
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.0013 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
+..++.+|+|+|||.++-+++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 567888999999999987776655
No 170
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.86 E-value=0.0017 Score=46.09 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=27.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeeccee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVV 65 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~ 65 (67)
+-.++.++.|+|||......+.. ++.+|++||..+
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~a 196 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQA 196 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHHH
Confidence 45778999999999988665542 678999999754
No 171
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.85 E-value=0.0025 Score=45.11 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=23.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
...++.+|+|+|||+++-++....+.+++.+
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 5688899999999999877766555554443
No 172
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.84 E-value=0.0028 Score=45.41 Aligned_cols=53 Identities=28% Similarity=0.279 Sum_probs=39.2
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-----EeeeeEEEeecc
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-----VRKRALVLCNSG 63 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-----~~~~~lil~p~~ 63 (67)
.+.|.|||++.++.+... +..++..|-|+|||.++...+.. -+.++++++|+.
T Consensus 161 ~~~l~p~Q~~i~~~l~~~---r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~ 218 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 218 (592)
T ss_dssp BCCCCHHHHHHHHHHHHC---SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSH
T ss_pred cCcCCHHHHHHHHhhccc---cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 467899999999887332 57889999999999887543322 134788888874
No 173
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.82 E-value=0.0028 Score=42.19 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=24.0
Q ss_pred hHHHHHhcCC-cce-eeeEEEeCCCCceeEeeeeEE
Q psy11637 17 KSLRKMFGNG-RAR-SGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 17 ~av~~~~~~~-~~~-~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.+++.|++.. ..+ ..++.+|+|+|||..+.+++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3456677753 223 477779999999999876664
No 174
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.78 E-value=0.00072 Score=44.42 Aligned_cols=37 Identities=16% Similarity=0.025 Sum_probs=24.3
Q ss_pred hhhHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 15 QEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 15 Q~~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
|+++++.+... ..+++.++.+|+|+|||.++-.+...
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 55665553321 01268999999999999887655443
No 175
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.77 E-value=0.014 Score=35.65 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=24.1
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeE
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
..+++.+..+ .+....|.+|+|+|||+.+..++
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4667777532 24678889999999999886554
No 176
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.77 E-value=0.0038 Score=38.35 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=17.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.+|.|||||+++-.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5677889999999998755443
No 177
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.76 E-value=0.0031 Score=43.71 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
++.++.+|+|+|||.++-+++...+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5788899999999999876665544
No 178
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.75 E-value=0.0029 Score=38.68 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=29.3
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEe
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~ 60 (67)
+.+++++..+ .+...+|.+|+|+|||+.+..++.. .+++++++.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567766421 2356788999999999988766543 245666654
No 179
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.74 E-value=0.0027 Score=41.01 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=33.1
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
+--|+.+.+.+.+ ++. ...+|.+|.|.|||.....+......+.+++
T Consensus 15 ~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~ 61 (357)
T 2fna_A 15 FFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYL 61 (357)
T ss_dssp SCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred hcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 4447777777777 765 4788899999999998876655443344443
No 180
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.72 E-value=0.011 Score=38.06 Aligned_cols=40 Identities=15% Similarity=-0.004 Sum_probs=29.9
Q ss_pred eeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 9 AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
+--|+.+.+.+.++++.+ +..+|.+|.|.|||.....+..
T Consensus 14 ~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 14 IFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHH
Confidence 444777777787777643 5788999999999988765543
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.69 E-value=0.004 Score=38.69 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=17.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...++++|+|+|||+++-.++.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4577889999999998865543
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.69 E-value=0.0024 Score=41.67 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=27.3
Q ss_pred hhHHHHHhcCCcceee-eEEEeCCCCceeEeeeeEEEEeeeeEEEe
Q psy11637 16 EKSLRKMFGNGRARSG-VIVLPCGAGKSLVGVTACCTVRKRALVLC 60 (67)
Q Consensus 16 ~~av~~~~~~~~~~~~-~i~~pTGsGKT~i~~~~~~~~~~~~lil~ 60 (67)
.+.+.++++.+...+. ++.+|+|+|||.++..++...+.+++.+-
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 3444456655432344 44577999999998777665555544443
No 183
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.64 E-value=0.0042 Score=37.71 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=15.8
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
....|.+|+|||||+++-.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHH
Confidence 45678899999999887444
No 184
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.64 E-value=0.011 Score=42.13 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=17.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...+|++|||||||++.-+++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5688999999999988755443
No 185
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.62 E-value=0.0041 Score=40.94 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=25.2
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEE
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
..+++++..+ .+...+|.+|+|+|||..++.++.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567777532 245688889999999999987664
No 186
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.61 E-value=0.0034 Score=36.89 Aligned_cols=22 Identities=18% Similarity=-0.075 Sum_probs=17.1
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..+|.+|.|||||+++-.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999988665543
No 187
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.60 E-value=0.0069 Score=36.26 Aligned_cols=23 Identities=22% Similarity=-0.023 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
....+.+|+|+|||+.+-.++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57788999999999987655443
No 188
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.55 E-value=0.0062 Score=39.72 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=18.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.+.++.+|+|+|||.++-.+..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 5788999999999998865544
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.52 E-value=0.0018 Score=45.27 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=22.6
Q ss_pred HHhcCCcceeeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 21 KMFGNGRARSGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 21 ~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
+.++.+...+.++.+|+|+|||+++-.+....+
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344433334688999999999998866654433
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.52 E-value=0.0092 Score=39.30 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
+..++.+|+|+|||.++-.++..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5788999999999999877665543
No 191
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.51 E-value=0.003 Score=39.80 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=25.3
Q ss_pred eeEEEeCCCCceeEeeeeEEEEeeeeEEEeec
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTVRKRALVLCNS 62 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~ 62 (67)
.+|.+++|||||..+..++.. +.+.++++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 368899999999999887776 6778887753
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.49 E-value=0.0071 Score=39.94 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=24.1
Q ss_pred hhhHHHH---HhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 15 QEKSLRK---MFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 15 Q~~av~~---~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
|+++++. +++.+.-.+.++.+|+|+|||+++..++.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6666654 44444222378899999999988865543
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.49 E-value=0.0045 Score=36.69 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=17.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.+|+|||||+++-.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999998755443
No 194
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.49 E-value=0.0081 Score=39.14 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=21.0
Q ss_pred HHHHHhcCCcceeeeEEEeCCCCceeEeeeeE
Q psy11637 18 SLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 18 av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
+++.+- -..++...|++|||||||++.-.++
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHH
Confidence 444433 2223678899999999998875544
No 195
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.44 E-value=0.0015 Score=41.11 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=26.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeec
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNS 62 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~ 62 (67)
.-.++.+|+|+|||+.++.++.+. +.+++++.|.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 467778999999999888777664 5678887654
No 196
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.42 E-value=0.0017 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=19.8
Q ss_pred eeeEEEeCCCCceeEeeeeEEEEee
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTVRK 54 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~~~ 54 (67)
..+|++|||+|||.++..++...+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC
Confidence 4578899999999998877765543
No 197
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.41 E-value=0.0028 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=19.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|+|+|||+++-++....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568889999999999887665543
No 198
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.41 E-value=0.013 Score=40.00 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=21.5
Q ss_pred HHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 18 SLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 18 av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.++++.... ++..+|.+|||||||++.-.++.
T Consensus 114 ~l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 114 VFKRVSDVP-RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHHHHHHCS-SEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHhCC-CCEEEEECCCCCCHHHHHHHHHh
Confidence 344444322 25788899999999988765544
No 199
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.40 E-value=0.0059 Score=40.07 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=21.5
Q ss_pred hHHHHHhcCCc-ceeeeEEEeCCCCceeEeeeeEE
Q psy11637 17 KSLRKMFGNGR-ARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 17 ~av~~~~~~~~-~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
+.+.++++.+. .+..++.+|+|+|||.++..++.
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33444444332 23468899999999988765543
No 200
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.38 E-value=0.0061 Score=37.71 Aligned_cols=20 Identities=40% Similarity=0.411 Sum_probs=16.2
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
+...|++|+|+|||++.-.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46778999999999887544
No 201
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.37 E-value=0.0016 Score=39.32 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=18.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+++|||||+++-.+....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999986665443
No 202
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.37 E-value=0.0041 Score=43.14 Aligned_cols=53 Identities=28% Similarity=0.279 Sum_probs=39.8
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEE-----EeeeeEEEeecc
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT-----VRKRALVLCNSG 63 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~-----~~~~~lil~p~~ 63 (67)
.+.|.|||++.++.+... +..++..+-+.|||.+++..+.. -+.++++++|+.
T Consensus 161 p~~L~p~Qk~il~~l~~~---R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~ 218 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 218 (385)
T ss_dssp ECCCCHHHHHHHHHHHHS---SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSH
T ss_pred CCCCCHHHHHHHHhhccC---cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 468899999999876433 56889999999999887654332 245788888874
No 203
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.35 E-value=0.0038 Score=42.36 Aligned_cols=45 Identities=29% Similarity=0.295 Sum_probs=32.0
Q ss_pred hhHHHHHhc-CC--cceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 16 EKSLRKMFG-NG--RARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 16 ~~av~~~~~-~~--~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
...+++++. .+ .+...+|.+|+|+|||..++.++... +++++++.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 346778887 32 24568888999999999988776543 45666664
No 204
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.34 E-value=0.0021 Score=41.58 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=18.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...+|.+|||+|||.+++.++.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45678899999999888777654
No 205
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.33 E-value=0.0085 Score=39.55 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.+.+|.+|+|+|||.++-.+..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 6789999999999998865544
No 206
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.30 E-value=0.0015 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=18.9
Q ss_pred eeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
..+|.+|||||||.++..++...+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 456889999999999877665543
No 207
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.26 E-value=0.005 Score=43.86 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=25.6
Q ss_pred hhhHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 15 QEKSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 15 Q~~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
|+++++.++.. ..+++.++.+|+|+|||.++-++....
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 55555554321 112689999999999999886665543
No 208
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.25 E-value=0.0057 Score=36.96 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=16.1
Q ss_pred eeeEEEeCCCCceeEeeeeE
Q psy11637 30 SGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~ 49 (67)
..++.+|+|+|||+++-.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 45688999999999876554
No 209
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.25 E-value=0.0022 Score=41.39 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=26.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeec
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNS 62 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~ 62 (67)
.-.++.+|+|+|||+.++.++.+. +.+++++.|.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 567778999999999988777664 4578877654
No 210
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.22 E-value=0.0055 Score=37.13 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=16.5
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|.+|+|||||+++-.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 466788999999998875443
No 211
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.22 E-value=0.0074 Score=36.43 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=18.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56778899999999988666544
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.22 E-value=0.011 Score=36.69 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=22.9
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeE
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
..+++++..+ .+....|.+|+|+|||+.+..++
T Consensus 17 ~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3456666422 23677889999999999886554
No 213
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.22 E-value=0.0026 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
+..++.+|+|+|||.++-+++...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 567889999999999987766655
No 214
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.15 E-value=0.0015 Score=40.26 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=17.2
Q ss_pred eeEEEeCCCCceeEeeeeEEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.+|.+|+|||||+++-.+....
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999986665443
No 215
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.15 E-value=0.002 Score=40.29 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=18.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|+|||||+++-.+....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457788999999999986665443
No 216
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.14 E-value=0.0016 Score=40.19 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=17.2
Q ss_pred eeEEEeCCCCceeEeeeeEEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.+|.+|+|||||+++-.++...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999986665443
No 217
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.13 E-value=0.0078 Score=36.06 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=17.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999988665443
No 218
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.10 E-value=0.0015 Score=39.23 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=17.5
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..+|.+|+|||||+++-.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999998666544
No 219
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.10 E-value=0.002 Score=40.75 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.2
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..++.+|+|+|||+++-.++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3688899999999887655443
No 220
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.10 E-value=0.0055 Score=37.32 Aligned_cols=20 Identities=35% Similarity=0.290 Sum_probs=15.5
Q ss_pred eeeEEEeCCCCceeEeeeeE
Q psy11637 30 SGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~ 49 (67)
...|.+|+|+|||++.-.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45688999999998875443
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.08 E-value=0.005 Score=42.24 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=33.1
Q ss_pred hhHHHHHhc-CC--cceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEee
Q psy11637 16 EKSLRKMFG-NG--RARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCN 61 (67)
Q Consensus 16 ~~av~~~~~-~~--~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p 61 (67)
...+++++. .+ .+...+|.+|+|+|||+.++.++... +++++++..
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 456788887 43 24567888999999999988776653 456777654
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.05 E-value=0.0067 Score=36.19 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=18.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|+|||||+++-.+...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788999999999886665543
No 223
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.05 E-value=0.007 Score=36.24 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...++.+++|||||+++-.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999998866654
No 224
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.02 E-value=0.0086 Score=37.44 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=12.9
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|.+|+|+|||+++-.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 456788999999999876555
No 225
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.99 E-value=0.0073 Score=35.98 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=18.6
Q ss_pred eeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
..++.+++|||||+++-.+...++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999877665543
No 226
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.99 E-value=0.0062 Score=41.17 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=25.3
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..++.++..+ .+....|.+|+|+|||..+..++..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567777542 2466788999999999988766543
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.96 E-value=0.0091 Score=40.72 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=18.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
+..+|++|||||||++.-.++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6788999999999998865544
No 228
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.96 E-value=0.0069 Score=44.91 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=39.0
Q ss_pred chhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeecceee
Q psy11637 14 YQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVVF 66 (67)
Q Consensus 14 yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~~~v 66 (67)
-|+++++++++... +..+|.++-|.|||...-.++.....+.+|.+|+..++
T Consensus 179 dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~ 230 (671)
T 2zpa_A 179 EQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKAST 230 (671)
T ss_dssp HHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSC
T ss_pred HHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHH
Confidence 59999999887532 56789999999999666445544455678889987664
No 229
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.96 E-value=0.0013 Score=39.59 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=17.4
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..+|.+++|||||+++-.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999998666544
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.94 E-value=0.0018 Score=38.94 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999988665543
No 231
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.93 E-value=0.0072 Score=38.85 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=18.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+|+|+|||.++-.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46789999999999988666554
No 232
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.93 E-value=0.002 Score=38.51 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=17.4
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..++.+++|||||+++-.+...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999988665544
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.93 E-value=0.007 Score=37.27 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=17.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...++++|+|||||+++-.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999998865544
No 234
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.92 E-value=0.0015 Score=38.84 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.+.+|.++.|||||+++-.+..++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999987665543
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.90 E-value=0.0074 Score=39.67 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=18.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++++|+|||||+++-.+....
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999987665443
No 236
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.86 E-value=0.0094 Score=42.76 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=24.4
Q ss_pred hhhHHHHHh---cCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 15 QEKSLRKMF---GNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 15 Q~~av~~~~---~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
|+++++.+. ..+ ...++.+|+|+|||+++-.++.
T Consensus 46 ~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 46 QEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHH
T ss_pred chhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhc
Confidence 666665533 333 6889999999999999865543
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.81 E-value=0.021 Score=38.63 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=17.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...+|++|||||||++.-.++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6888999999999987755443
No 238
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.81 E-value=0.014 Score=35.20 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....+++|+|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 567789999999998764
No 239
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.77 E-value=0.0084 Score=36.78 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
....|++|.|||||+++-.+...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56778899999999988655543
No 240
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.76 E-value=0.007 Score=37.31 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.1
Q ss_pred eeeEEEeCCCCceeEeeeeE
Q psy11637 30 SGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~ 49 (67)
...|.+|+|||||+++-.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46688999999999885544
No 241
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.76 E-value=0.008 Score=35.80 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.7
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....+.+|.|||||+++-.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 467788999999999875443
No 242
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.76 E-value=0.0017 Score=38.79 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=16.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKR 55 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~ 55 (67)
...++.+++|||||+++-.+...++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 356778999999999987766554443
No 243
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.74 E-value=0.0088 Score=35.99 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=18.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+++|||||+++-.+...+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999986655443
No 244
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.70 E-value=0.009 Score=35.63 Aligned_cols=23 Identities=17% Similarity=0.003 Sum_probs=17.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999998655443
No 245
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.70 E-value=0.005 Score=42.03 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=32.0
Q ss_pred hHHHHHhc-CC--cceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEee
Q psy11637 17 KSLRKMFG-NG--RARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCN 61 (67)
Q Consensus 17 ~av~~~~~-~~--~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p 61 (67)
..++.++. .+ .+...+|.+|+|+|||.+++.++... +.+++++.-
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45777776 32 23567888999999999998777543 456777653
No 246
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.68 E-value=0.011 Score=36.17 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=15.7
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
....|.+|+|||||+++-.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45668899999999887443
No 247
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.64 E-value=0.0018 Score=41.45 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=19.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
...++.+|+|||||+++-.+....+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567889999999999876655443
No 248
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.63 E-value=0.0017 Score=38.47 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.3
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..++.+++|||||+++-.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999998665544
No 249
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.63 E-value=0.0066 Score=40.29 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=30.1
Q ss_pred hHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 17 KSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
..+++++.. ..+.-.+|.+++|+|||..++.++... +.+++++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 445666632 123568888999999999988776542 35777765
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.60 E-value=0.0072 Score=36.93 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=17.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...+|.++.|||||+++-.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577889999999998865543
No 251
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.57 E-value=0.0087 Score=36.33 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=18.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999988655443
No 252
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.54 E-value=0.0031 Score=40.62 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=17.6
Q ss_pred eeeEEEeCCCCceeEeeeeEEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
..++.+|+|+|||+++-.++...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 36888999999999876555433
No 253
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.51 E-value=0.013 Score=38.87 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=29.6
Q ss_pred eeccchhhHHHHHh-c----C--CcceeeeE--EEeCCCCceeEeeeeEEEE
Q psy11637 10 VLRPYQEKSLRKMF-G----N--GRARSGVI--VLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 10 ~lR~yQ~~av~~~~-~----~--~~~~~~~i--~~pTGsGKT~i~~~~~~~~ 52 (67)
.=|+.+.+.+.+++ . . ......+| .+|+|+|||.++..+....
T Consensus 25 ~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 25 RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 33667777777776 3 2 22356777 7999999999887665543
No 254
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.48 E-value=0.013 Score=35.07 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.7
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
+-.+|++|+|+|||.+.-+
T Consensus 24 g~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5678999999999987644
No 255
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.47 E-value=0.0044 Score=46.13 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKR 55 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~ 55 (67)
+...++++|+|+|||+++-+++...+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 3568888999999999886665544433
No 256
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.47 E-value=0.0029 Score=39.33 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=18.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+++|||||+++-.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456788999999999986665543
No 257
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.46 E-value=0.015 Score=34.80 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=16.0
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
+..+|++|+|+|||.+.-++
T Consensus 27 g~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 46778999999999876443
No 258
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.44 E-value=0.0045 Score=39.26 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=18.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|+|+|||.++-+++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 457888999999999986665543
No 259
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.37 E-value=0.0047 Score=40.31 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=17.2
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
..++.+|+|+|||+++-+++..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3778899999999887655443
No 260
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.34 E-value=0.011 Score=36.73 Aligned_cols=24 Identities=13% Similarity=-0.126 Sum_probs=18.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|+|||||+++-.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788999999999986665443
No 261
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.33 E-value=0.0092 Score=39.64 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=17.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...++.+|+|+|||+++-.++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999988755443
No 262
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.31 E-value=0.0022 Score=39.28 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+++|||||+++-.+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778999999999986665543
No 263
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.31 E-value=0.017 Score=38.95 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=16.4
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
+-.+|.+|||+|||.+.-++
T Consensus 26 gl~vi~G~NGaGKT~ileAI 45 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAV 45 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57889999999999876443
No 264
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.24 E-value=0.022 Score=38.80 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.8
Q ss_pred ceeeeEEEeCCCCceeEe
Q psy11637 28 ARSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~ 45 (67)
..+.+|.+|||||||...
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 468999999999999865
No 265
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.19 E-value=0.0041 Score=38.75 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=18.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
...++.+++|||||+++-.+...++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567789999999999876655443
No 266
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.19 E-value=0.0097 Score=41.57 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 18 SLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 18 av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
.+++++.+ ..+.-.+|.+++|+|||..++.++... +.+++++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 45666642 123567888999999999998776653 56777764
No 267
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.18 E-value=0.021 Score=38.35 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
+...|++|||||||+..-.++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6788999999999987754443
No 268
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.15 E-value=0.0085 Score=41.06 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=32.3
Q ss_pred hhHHHHHhc-CC--cceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEee
Q psy11637 16 EKSLRKMFG-NG--RARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCN 61 (67)
Q Consensus 16 ~~av~~~~~-~~--~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p 61 (67)
...++..+. .+ .+...+|.+|+|+|||..++.++... +++++|+.-
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 345677776 32 23567888999999999998776643 457777653
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.10 E-value=0.015 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.061 Sum_probs=15.6
Q ss_pred eeeEEEeCCCCceeEeeeeE
Q psy11637 30 SGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~ 49 (67)
...|.+++|||||+++-.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 34688999999999875543
No 270
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.06 E-value=0.011 Score=40.80 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=30.2
Q ss_pred hHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEe
Q psy11637 17 KSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~ 60 (67)
..+++++.+ ..+.-.+|.+++|+|||..++.++... +.+++++.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345666632 123567888999999999988776542 45777764
No 271
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.06 E-value=0.0099 Score=36.33 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.1
Q ss_pred eeEEEeCCCCceeEeeeeE
Q psy11637 31 GVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~ 49 (67)
..|.+|.|||||+++-.+.
T Consensus 5 i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999885553
No 272
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.06 E-value=0.026 Score=40.72 Aligned_cols=23 Identities=17% Similarity=-0.024 Sum_probs=18.7
Q ss_pred eeeEEEeCCCCceeEeeeeEEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
+.++.+|+|+|||.++-.+....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 78999999999999886655443
No 273
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.03 E-value=0.015 Score=35.97 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=17.3
Q ss_pred eeEEEeCCCCceeEeeeeEEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.++.+|+|||||+++-.+....
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999886665543
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.01 E-value=0.0028 Score=39.80 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
+-.+|++|.|+|||++.-.++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 346788999999999876665443
No 275
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.95 E-value=0.0053 Score=43.56 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=22.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
+..++.+|+|+|||+++-+++...+.+.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 4578889999999998866655544444433
No 276
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.94 E-value=0.011 Score=35.52 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=17.9
Q ss_pred eeEEEeCCCCceeEeeeeEEEEe
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTVR 53 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~~ 53 (67)
.+|.+++|||||+++-.+...++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 46789999999998876665443
No 277
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.93 E-value=0.0032 Score=38.41 Aligned_cols=23 Identities=17% Similarity=-0.015 Sum_probs=17.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35677899999999988655543
No 278
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.88 E-value=0.018 Score=39.08 Aligned_cols=19 Identities=37% Similarity=0.288 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
+-.+|++|+|+|||.+.-+
T Consensus 24 g~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4667899999999988643
No 279
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.85 E-value=0.015 Score=35.11 Aligned_cols=22 Identities=27% Similarity=0.054 Sum_probs=17.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.+++|||||+++-.+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3466889999999998865544
No 280
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.78 E-value=0.015 Score=35.12 Aligned_cols=24 Identities=17% Similarity=-0.162 Sum_probs=18.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.++.|||||+++-.+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456788999999999987666543
No 281
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.78 E-value=0.005 Score=43.52 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=22.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALV 58 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~li 58 (67)
++.++.+|+|+|||.++-.++..++.+.+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 578889999999999987766655444433
No 282
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.77 E-value=0.04 Score=33.85 Aligned_cols=22 Identities=14% Similarity=-0.144 Sum_probs=17.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.+|.|||||+++-.+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999998865543
No 283
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.75 E-value=0.013 Score=37.91 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=28.7
Q ss_pred hHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEe
Q psy11637 17 KSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~ 60 (67)
.+++.+... ..+...+|.+|+|+|||+.+..++... +.+++++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456666532 223678889999999999887665432 23666653
No 284
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.74 E-value=0.038 Score=36.40 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=16.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.+|.|||||+++-.+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999998754443
No 285
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.74 E-value=0.0039 Score=39.27 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=18.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+++|||||+++-.++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999987665544
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.72 E-value=0.016 Score=36.28 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=15.5
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
....|++|+|+|||++.-.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5677899999999987643
No 287
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.72 E-value=0.0022 Score=44.09 Aligned_cols=32 Identities=6% Similarity=-0.073 Sum_probs=22.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~ 60 (67)
...+|.+|+|+|||..+..++...+.+++++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs 155 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYAT 155 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 44588899999999998877654344544443
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.68 E-value=0.015 Score=36.66 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=16.9
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|.+|+|||||+++-.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467788999999999875544
No 289
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.66 E-value=0.011 Score=40.94 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=30.2
Q ss_pred hHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEe
Q psy11637 17 KSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~ 60 (67)
..+++++.. ..+.-.+|.+++|+|||..++.++... +.+++++.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345666532 123567888999999999998776642 34777765
No 290
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.60 E-value=0.0049 Score=38.56 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=17.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
....|.++.|||||+++-.+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 44557799999999998665543
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.55 E-value=0.0051 Score=39.27 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=18.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+|+|||||+++-.+..+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56788899999999998766544
No 292
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.50 E-value=0.02 Score=34.99 Aligned_cols=22 Identities=14% Similarity=-0.153 Sum_probs=16.8
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.+|+|||||+++-.+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4566889999999998855543
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.50 E-value=0.021 Score=36.16 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=17.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
+..+|++|+|+|||++.-.++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHh
Confidence 5677889999999998765543
No 294
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.46 E-value=0.014 Score=36.91 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=16.4
Q ss_pred eeEEEeCCCCceeEeeeeEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.++.+|+||||++.+..++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467799999999988665543
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.36 E-value=0.016 Score=39.50 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=30.7
Q ss_pred hHHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEe
Q psy11637 17 KSLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~ 60 (67)
..+++++.. ..+.-.+|.+++|+|||..++.++.. .+.+++|+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456666653 12356788899999999998877654 356777764
No 296
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.36 E-value=0.0075 Score=45.39 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=23.7
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEEE
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil 59 (67)
.+..++.+|+|+|||.++-+++.+.+.+++.+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 35678889999999999877766655544433
No 297
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.28 E-value=0.021 Score=34.65 Aligned_cols=23 Identities=17% Similarity=-0.162 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.++.|||||+++-.+...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678899999999998766554
No 298
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.27 E-value=0.019 Score=36.78 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.0
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|++|.|||||+++-.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467789999999999885554
No 299
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.26 E-value=0.015 Score=34.75 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=17.2
Q ss_pred eeEEEeCCCCceeEeeeeEEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.++.++.|||||+++-.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999987665543
No 300
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.26 E-value=0.016 Score=34.02 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=16.6
Q ss_pred eeEEEeCCCCceeEeeeeEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.++.+++|||||+++-.+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467899999999988665543
No 301
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.25 E-value=0.0099 Score=38.31 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=18.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...+|.+|+|+|||+.+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5788899999999998876553
No 302
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.22 E-value=0.019 Score=34.70 Aligned_cols=24 Identities=13% Similarity=-0.082 Sum_probs=19.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.++.|||||+++-.+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456788999999999987766655
No 303
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.19 E-value=0.03 Score=34.47 Aligned_cols=19 Identities=37% Similarity=0.314 Sum_probs=15.6
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
....|++|+|+|||++.-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5677899999999987643
No 304
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.11 E-value=0.017 Score=37.05 Aligned_cols=23 Identities=17% Similarity=0.008 Sum_probs=18.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 35677899999999998766654
No 305
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.11 E-value=0.006 Score=42.92 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=23.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
...++++|+|+|||+++..++..+ +++++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456777999999999987666543 45666554
No 306
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=92.11 E-value=0.042 Score=37.77 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=21.4
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+...+ .|.+...+..+.||||||+++..
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCC
Confidence 36666554321 23334455569999999998764
No 307
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.08 E-value=0.022 Score=36.42 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=17.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+..+|.+|+||||++.+..++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999988655543
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.05 E-value=0.024 Score=34.44 Aligned_cols=23 Identities=22% Similarity=-0.096 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.++.|||||+++-.+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999998766554
No 309
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=92.04 E-value=0.053 Score=37.22 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=21.6
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.... .|.+...+..+.||||||+++..
T Consensus 68 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 68 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTB
T ss_pred chhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEec
Confidence 47766655321 23333455569999999998764
No 310
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=92.03 E-value=0.041 Score=37.32 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=21.7
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+...+ .|.+...+..+.||||||+++..
T Consensus 57 sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred CHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 47766655321 23334455569999999998864
No 311
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.02 E-value=0.026 Score=35.83 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=15.9
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
....|++|.|+|||++.-.+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L 36 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQAL 36 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56778899999999876443
No 312
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.95 E-value=0.0084 Score=42.38 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=23.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
...++++++|+|||+++..++..+ +.+++++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456778999999999997776543 45666554
No 313
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.90 E-value=0.028 Score=37.47 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=21.9
Q ss_pred eeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 10 VLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 10 ~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
.+|+|...-++ +.. +-.+|++|+|+|||.+.-+
T Consensus 10 nF~~~~~~~i~--f~~---~~~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 10 NFRSHSDTVVE--FKE---GINLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp EETTEEEEEEE--CCS---EEEEEECCTTSSHHHHHHH
T ss_pred cccCccCeEEc--CCC---CeEEEECCCCCCHHHHHHH
Confidence 56777543221 222 5678999999999988754
No 314
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.89 E-value=0.035 Score=34.05 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.3
Q ss_pred eeeEEEeCCCCceeEe
Q psy11637 30 SGVIVLPCGAGKSLVG 45 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~ 45 (67)
+..|.+|+|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3468999999999875
No 315
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=91.87 E-value=0.047 Score=37.39 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=21.3
Q ss_pred chhhHHHH--------HhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRK--------MFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~--------~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+. +++ |.+...+..+.||||||.++..
T Consensus 57 tQ~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 57 TTKNVYEEIAAPIIDSAIQ-GYNGTIFAYGQTASGKTYTMMG 97 (349)
T ss_dssp CHHHHHHHTTHHHHHHHHT-TCCEEEEEEESTTSSHHHHHTB
T ss_pred CHHHHHHHHHHHHHHHHHc-CCccceeeecCCCCCCCeEEec
Confidence 47666654 333 3334455569999999998753
No 316
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.81 E-value=0.02 Score=36.92 Aligned_cols=21 Identities=19% Similarity=-0.018 Sum_probs=16.8
Q ss_pred eeeEEEeCCCCceeEeeeeEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~ 50 (67)
..++.+++|||||+++-.+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457889999999998865554
No 317
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=91.81 E-value=0.048 Score=37.74 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=21.5
Q ss_pred chhhHHHHH--------hcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKM--------FGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~--------~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..++. ++ |.+...+..+.||||||+++..
T Consensus 81 ~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 81 KQFELYDETFRPLVDSVLQ-GFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp CHHHHHHHTHHHHHHHHHT-TCCEEEEEEESTTSSHHHHHTB
T ss_pred chHHHHHHHHHHHHHHHhC-CCeeeEEeecCCCCCCCEeEec
Confidence 477766553 33 3334455569999999988754
No 318
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.79 E-value=0.0087 Score=43.59 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=20.5
Q ss_pred eeeEEEeCCCCceeEeeeeEEEEeeee
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTVRKRA 56 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~~~~~ 56 (67)
+.++.+|+|+|||.++-.+....+.+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~ 516 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIEL 516 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCE
Confidence 678999999999999866655544443
No 319
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.77 E-value=0.029 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHHhcCCcceeeeEEEeCCCCceeEe
Q psy11637 19 LRKMFGNGRARSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 19 v~~~~~~~~~~~~~i~~pTGsGKT~i~ 45 (67)
++.+++.+ +..++++|||+|||.++
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHH
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHH
Confidence 34455544 68999999999999887
No 320
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.74 E-value=0.018 Score=34.50 Aligned_cols=22 Identities=18% Similarity=-0.136 Sum_probs=17.5
Q ss_pred eeEEEeCCCCceeEeeeeEEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.++.++.|||||+++-.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999987766554
No 321
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.73 E-value=0.036 Score=37.34 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=21.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil 59 (67)
.+.+|.+|||+|||+....++.. .+.+++++
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 68899999999999877554433 24455544
No 322
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.73 E-value=0.023 Score=35.57 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=17.2
Q ss_pred eeEEEeCCCCceeEeeeeEEEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.++.+|+|||||+++-.+....
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999886665443
No 323
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.73 E-value=0.0088 Score=40.05 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=22.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
...++++|+|+|||+++..++... +++++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 456788999999999887665542 45565543
No 324
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=91.72 E-value=0.046 Score=38.06 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=21.7
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.... .|.+...+..+.||||||+++..
T Consensus 78 tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G 118 (388)
T 3bfn_A 78 TQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG 118 (388)
T ss_dssp CHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTB
T ss_pred CHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeec
Confidence 47777765322 23223445569999999988753
No 325
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.72 E-value=0.03 Score=34.88 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.4
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
+-.+|++|+|+|||.+.-++
T Consensus 24 ~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 57789999999999886443
No 326
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=91.66 E-value=0.042 Score=37.70 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=21.7
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.... .|.+...+..+.||||||+++..
T Consensus 60 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 60 KQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp CHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred ccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeec
Confidence 47776664221 23334455569999999998754
No 327
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.60 E-value=0.026 Score=33.78 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=17.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
....+.++.|||||+++-.+...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45668899999999988655443
No 328
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.52 E-value=0.016 Score=39.82 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=30.9
Q ss_pred hHHHHHhc----CC-cceeeeEEEeCCCCceeEeeeeEEEE-----eeeeEEEee
Q psy11637 17 KSLRKMFG----NG-RARSGVIVLPCGAGKSLVGVTACCTV-----RKRALVLCN 61 (67)
Q Consensus 17 ~av~~~~~----~~-~~~~~~i~~pTGsGKT~i~~~~~~~~-----~~~~lil~p 61 (67)
..+++.+. .+ ..+...|.+|+|+|||.+++.++... +++++++..
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 45677776 43 12367788999999999988776542 456777643
No 329
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=91.52 E-value=0.034 Score=38.23 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.7
Q ss_pred eeEEEeCCCCceeEeee
Q psy11637 31 GVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~ 47 (67)
.+..+.||||||+++..
T Consensus 88 ifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 88 CFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp EEEECCTTSSHHHHHHB
T ss_pred EEeeCCCCCCCCEEEec
Confidence 45669999999988754
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.48 E-value=0.019 Score=36.36 Aligned_cols=22 Identities=18% Similarity=-0.153 Sum_probs=16.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...-|.+|.|||||+++-.+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999998854443
No 331
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.44 E-value=0.0087 Score=42.65 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=21.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALV 58 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~li 58 (67)
...++.+|+|+|||+++-+++...+.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 347889999999999886665544434333
No 332
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=91.44 E-value=0.052 Score=37.40 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=22.0
Q ss_pred cchhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 13 PYQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 13 ~yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
.-|++..+.... .|.+...+..+.||||||+++..
T Consensus 63 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 63 ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG 104 (365)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEec
Confidence 347776655321 23334455569999999998753
No 333
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.35 E-value=0.0095 Score=40.01 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=22.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil 59 (67)
+...+++|+|+|||+++..++.. .+++++++
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45667799999999998766543 25666665
No 334
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.35 E-value=0.017 Score=41.10 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+|+|+|||+++-.+...
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56888999999999988655443
No 335
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.34 E-value=0.0079 Score=38.90 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=25.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeec
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNS 62 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~ 62 (67)
.--++.+|.|+|||+.++..+.+. +.+++++.|.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 345567999999999888777653 5678887764
No 336
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.32 E-value=0.076 Score=35.99 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=24.6
Q ss_pred hhHHHHHhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 16 EKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 16 ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
..+++.++.-+++....|.+|.|+|||++.-.
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~ 90 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGM 90 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHH
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHH
Confidence 56888887544447888999999999988533
No 337
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=91.30 E-value=0.058 Score=36.95 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=14.4
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
...+..+.||||||.++..
T Consensus 94 ~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 94 ACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp EEEEEEECTTSSHHHHHTB
T ss_pred eEEEeeCCCCCCCceEEec
Confidence 3445569999999998753
No 338
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.28 E-value=0.01 Score=39.40 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=23.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~ 60 (67)
.-.+..+..|.|||+++.+++.. .+.+++++-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 34666799999999999877654 356777653
No 339
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=91.27 E-value=0.048 Score=37.39 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=21.3
Q ss_pred chhhHHHH--------HhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRK--------MFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~--------~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+. +++ |.+...+..+.||||||+++..
T Consensus 69 ~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm~G 109 (350)
T 2vvg_A 69 CNYGIFQASFKPLIDAVLE-GFNSTIFAYGQTGAGKTWTMGG 109 (350)
T ss_dssp CHHHHHHHTTHHHHHHHHT-TCCEEEEEECSTTSSHHHHHTB
T ss_pred chhHHHHHHHHHHHHHHhC-CCceeEEeecCCCCCCCEEeec
Confidence 47666654 333 3334455569999999988753
No 340
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.19 E-value=0.015 Score=35.36 Aligned_cols=20 Identities=25% Similarity=-0.011 Sum_probs=15.8
Q ss_pred eeEEEeCCCCceeEeeeeEE
Q psy11637 31 GVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~ 50 (67)
.+|.+|.|||||+++-.+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 46789999999998865543
No 341
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=91.14 E-value=0.054 Score=36.89 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=21.3
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.... .+.+...+..+.||||||+++..
T Consensus 63 ~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 103 (344)
T 4a14_A 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGE 103 (344)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC
T ss_pred chhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecc
Confidence 47776655321 23323455569999999998753
No 342
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.08 E-value=0.047 Score=34.86 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=14.8
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
+...|++|.|||||+..
T Consensus 32 e~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTML 48 (235)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 67789999999999876
No 343
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.06 E-value=0.059 Score=37.69 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=30.6
Q ss_pred eeeccchhhHHHHHhcC--CcceeeeEEEeCCCCceeEeeeeEEE
Q psy11637 9 AVLRPYQEKSLRKMFGN--GRARSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 9 ~~lR~yQ~~av~~~~~~--~~~~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+.=|+...+.+.+++.. +..+...|++|.|.|||.++..+...
T Consensus 126 ~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 44477777777777753 22356778899999999998766543
No 344
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.03 E-value=0.012 Score=41.22 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
...++++++|+|||+++..++... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 356788999999999997776543 45666553
No 345
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.00 E-value=0.063 Score=33.98 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=14.6
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
+...|++|.|+|||+..
T Consensus 31 e~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLL 47 (224)
T ss_dssp CEEEEEECTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56778999999999875
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.86 E-value=0.053 Score=33.39 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=18.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...++.+++|||||+++-.+...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56778899999999988665443
No 347
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.84 E-value=0.037 Score=36.62 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=22.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV----RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~ 60 (67)
+..++++|+|+|||+++..++... +.+++++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467788999999999987665432 34665543
No 348
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.82 E-value=0.033 Score=38.62 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=23.8
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeE
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
..+++++..+ .+....|.+|+|+|||..+..++
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3466777543 24678889999999999887543
No 349
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.77 E-value=0.028 Score=35.35 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=15.6
Q ss_pred eeeEEEeCCCCceeEeeee
Q psy11637 30 SGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~ 48 (67)
..++.+++|||||..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4578899999999987653
No 350
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=90.70 E-value=0.07 Score=37.42 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=21.2
Q ss_pred chhhHHHH--------HhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRK--------MFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~--------~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+. +++ |.+...+..+.||||||+++..
T Consensus 134 tQ~~Vy~~~~~plV~~~l~-G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 134 SNEVVYRFTARPLVQTIFE-GGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp CHHHHHHHTTHHHHHHHHT-TCEEEEEEEESTTSSHHHHHHC
T ss_pred ChhhhhHHHHHHHHHHHhc-CCceeEEeecCCCCCCCeEeec
Confidence 47666654 333 3323455569999999998765
No 351
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=90.65 E-value=0.057 Score=36.99 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=21.0
Q ss_pred chhhHHHH--------HhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRK--------MFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~--------~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+. +++ |.+...+..+.||||||+++..
T Consensus 85 ~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm~G 125 (355)
T 3lre_A 85 TQSEVFEHTTKPILRSFLN-GYNCTVLAYGATGAGKTHTMLG 125 (355)
T ss_dssp CHHHHHHTTHHHHHHHHTT-TCCEEEEEECCTTSSHHHHHTB
T ss_pred ChHHHHHHHHHHHHHHHhC-CCceEEEEeCCCCCCceeeecc
Confidence 37666654 233 3334455569999999998754
No 352
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.56 E-value=0.03 Score=34.49 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=16.4
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|.++.|||||+++-.+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346678999999999876554
No 353
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.52 E-value=0.0098 Score=38.85 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=22.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALV 58 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~li 58 (67)
-+.++.+++|.|||++++.++..+ +.++++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v 39 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence 457788999999999988776553 345543
No 354
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.51 E-value=0.016 Score=40.46 Aligned_cols=43 Identities=7% Similarity=-0.119 Sum_probs=29.3
Q ss_pred HHHHHhcC-CcceeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEe
Q psy11637 18 SLRKMFGN-GRARSGVIVLPCGAGKSLVGVTACCTV----RKRALVLC 60 (67)
Q Consensus 18 av~~~~~~-~~~~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~ 60 (67)
.+++++.. ..+.-.+|.+++|+|||..++.++... +.+++++.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34555532 123567888999999999998776542 45777765
No 355
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=90.47 E-value=0.078 Score=36.44 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=21.2
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.... .+.+...+..+.||||||.++..
T Consensus 83 sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G 123 (358)
T 2nr8_A 83 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG 123 (358)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecc
Confidence 47666655321 23223445559999999998754
No 356
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.42 E-value=0.054 Score=35.78 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=16.2
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
+..+|++|+|+|||.+.-++
T Consensus 25 g~~~i~G~NGsGKS~ll~ai 44 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAI 44 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHH
Confidence 47789999999999877443
No 357
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=90.41 E-value=0.053 Score=37.09 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=20.5
Q ss_pred chhhHHHHH--------hcCCcceeeeEEEeCCCCceeEee
Q psy11637 14 YQEKSLRKM--------FGNGRARSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 14 yQ~~av~~~--------~~~~~~~~~~i~~pTGsGKT~i~~ 46 (67)
-|++..+.. ++ |.+...+..+.||||||.++.
T Consensus 74 sQ~~Vy~~~~~plv~~~l~-G~N~tifAYGQTGSGKTyTM~ 113 (344)
T 3dc4_A 74 SQDEMYQALILPLVDKLLE-GFQCTALAYGQTGTGKSYSMG 113 (344)
T ss_dssp CHHHHHHHHTHHHHHHHHH-TCCEEEEEESSTTSSHHHHHT
T ss_pred CHHHHHHhhccchhhHhhC-CCceEEEEecCCCCCCCeEEc
Confidence 476666553 33 322345556999999999863
No 358
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.31 E-value=0.035 Score=36.07 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=18.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|++++|+|||+++-.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6788999999999998865554
No 359
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.30 E-value=0.031 Score=33.77 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=16.3
Q ss_pred eeeEEEeCCCCceeEeeeeEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...|.++.|||||+++-.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999998865544
No 360
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.26 E-value=0.032 Score=35.44 Aligned_cols=23 Identities=17% Similarity=-0.054 Sum_probs=17.6
Q ss_pred eeeEEEeCCCCceeEeeeeEEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...|.++.|||||+++-.+...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45677999999999986665543
No 361
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.24 E-value=0.069 Score=34.13 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.4
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 677899999999998763
No 362
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=90.22 E-value=0.064 Score=37.33 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=20.7
Q ss_pred chhhHHHH--------HhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRK--------MFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~--------~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+. +++ +.....+..+.||||||+++..
T Consensus 114 sQ~~Vy~~~~~plv~~~l~-G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 114 SNEVVYRFTARPLVQTIFE-GGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp CHHHHHHHTTHHHHHHHHT-TCEEEEEEESCTTSSHHHHHC-
T ss_pred CceeehhhhHHHHHHHHhc-CCceEEEEecCCCCCCCeEecc
Confidence 47666654 333 3223445559999999998765
No 363
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.19 E-value=0.03 Score=47.53 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=20.3
Q ss_pred HHHHHhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 18 SLRKMFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 18 av~~~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
.++.++..+ +..++++|||+|||.+...
T Consensus 1296 ll~~ll~~~--~pvLL~GptGtGKT~li~~ 1323 (3245)
T 3vkg_A 1296 VLHAWLSEH--RPLILCGPPGSGKTMTLTS 1323 (3245)
T ss_dssp HHHHHHHTT--CCCEEESSTTSSHHHHHHH
T ss_pred HHHHHHHCC--CcEEEECCCCCCHHHHHHH
Confidence 344455554 6899999999999966533
No 364
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.16 E-value=0.13 Score=35.83 Aligned_cols=19 Identities=26% Similarity=0.137 Sum_probs=15.2
Q ss_pred eeeEEEeCCCCceeEeeee
Q psy11637 30 SGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~ 48 (67)
...+++|+|+|||+..-.+
T Consensus 71 ~valvG~nGaGKSTLln~L 89 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTL 89 (413)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6678899999999876433
No 365
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.62 E-value=0.055 Score=32.57 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=27.5
Q ss_pred ceeeccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 8 SAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 8 ~~~lR~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...|+|-+...-+.++.. +.-+.++++++|+|||.+...+..
T Consensus 11 ~~~~~~~~~~m~~~~~~~-~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 11 SSGLVPRGSHMENLYFQG-QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 455666555544444432 235678899999999988865543
No 366
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=90.13 E-value=0.062 Score=37.06 Aligned_cols=34 Identities=21% Similarity=0.101 Sum_probs=21.5
Q ss_pred chhhHHHHHhc-------CCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKMFG-------NGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~~~-------~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.... .+.+...+..+.||||||+++..
T Consensus 80 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 80 KQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTB
T ss_pred chhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceeccc
Confidence 47776655321 13324455569999999998754
No 367
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.09 E-value=0.065 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 677899999999998763
No 368
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.07 E-value=0.015 Score=41.35 Aligned_cols=35 Identities=6% Similarity=-0.042 Sum_probs=30.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeEEEeecc
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSG 63 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~lil~p~~ 63 (67)
.+..+.+-+|||||+++..++...++++|||+|+.
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~ 49 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDM 49 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSH
T ss_pred CeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCH
Confidence 46788999999999999988888889999999974
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.01 E-value=0.045 Score=35.69 Aligned_cols=21 Identities=24% Similarity=0.022 Sum_probs=16.4
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|.++.|||||+++-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 346678999999999885554
No 370
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.97 E-value=0.07 Score=35.09 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|||||+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998764
No 371
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.93 E-value=0.047 Score=36.43 Aligned_cols=21 Identities=14% Similarity=-0.114 Sum_probs=16.2
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|.+|+|||||+++-.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHH
Confidence 456678999999999875443
No 372
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=89.89 E-value=0.095 Score=36.15 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=20.2
Q ss_pred chhhHHHH-------HhcCCcceeeeEEEeCCCCceeEee
Q psy11637 14 YQEKSLRK-------MFGNGRARSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 14 yQ~~av~~-------~~~~~~~~~~~i~~pTGsGKT~i~~ 46 (67)
-|++..+. +++ |.+...+..+.||||||+++.
T Consensus 60 ~Q~~Vy~~~~~lv~~~l~-G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 60 TQDDVFEDTKYLVQSAVD-GYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp CHHHHHHTTTHHHHHHHT-TCEEEEEEEECTTSSHHHHHT
T ss_pred CcceehhhhhhhhHhhhc-CCceEEEEECCCCCCCeEeec
Confidence 46666554 333 322344455999999998874
No 373
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.86 E-value=0.045 Score=40.03 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.3
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
+.++.+|||+|||.++-++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998666554
No 374
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.77 E-value=0.071 Score=34.38 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 34 e~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998763
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.75 E-value=0.036 Score=36.64 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=17.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
....|.+|+|||||+++-.+....
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 345677999999999886554443
No 376
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.69 E-value=0.076 Score=34.60 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
+...|++|.|+|||+..-
T Consensus 38 e~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 567789999999998763
No 377
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=89.67 E-value=0.071 Score=36.67 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=21.1
Q ss_pred chhhHHHH--------HhcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRK--------MFGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~--------~~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+. +++ |.+...+..+.||||||+++..
T Consensus 69 sQ~~Vy~~~~~plv~~~l~-G~N~tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 69 SQKQVYRDIGEEMLQHAFE-GYNVCIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp CHHHHHHHTHHHHHHHHHT-TCCEEEEEECSTTSSHHHHHTB
T ss_pred cHHHHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCCCceEeeC
Confidence 36666554 333 3334455569999999988754
No 378
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.64 E-value=0.013 Score=44.17 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=22.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRAL 57 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~l 57 (67)
+..++.+|+|+|||.++-+++.+.+.+.+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 45788899999999998777666554443
No 379
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.63 E-value=0.081 Score=35.13 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=21.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil 59 (67)
....+++|+|+|||++...++... ++++++.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456788999999999886554432 3455444
No 380
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.63 E-value=0.17 Score=35.33 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=24.3
Q ss_pred hhHHHHHhcCCcceeeeEEEeCCCCceeEee
Q psy11637 16 EKSLRKMFGNGRARSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 16 ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~ 46 (67)
..+++.++.-.++....|.+|.|+|||++.-
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHH
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 5688888664445788899999999998753
No 381
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.63 E-value=0.26 Score=28.66 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHhcCCcceeeeEEEeCCCCceeEeeeeE
Q psy11637 20 RKMFGNGRARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 20 ~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
+.++......+.++++++|+|||.+...+.
T Consensus 10 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 10 DKLWGSNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp GGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred HHhcCCCCccEEEEECCCCCCHHHHHHHHh
Confidence 344441223678899999999998765444
No 382
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.63 E-value=0.041 Score=35.62 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=17.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.+|+|||||+++-.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577889999999998865543
No 383
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.58 E-value=0.033 Score=45.72 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=32.6
Q ss_pred hHHHHHhc-CC--cceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEee
Q psy11637 17 KSLRKMFG-NG--RARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCN 61 (67)
Q Consensus 17 ~av~~~~~-~~--~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p 61 (67)
..++..+. .+ .+.+.++.+|+|+|||.++.+++.. .+.+++|+..
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~ 1463 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 1463 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 34677776 32 2468889999999999999877654 3567777653
No 384
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.56 E-value=0.08 Score=33.58 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998763
No 385
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=89.47 E-value=0.089 Score=35.93 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=13.1
Q ss_pred eeeEEEeCCCCceeEee
Q psy11637 30 SGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~ 46 (67)
..+..+.||||||+++.
T Consensus 88 tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 88 CIFAYGQTGSGKTYTML 104 (349)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEeCCCCCCCceEeC
Confidence 34455999999998874
No 386
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.43 E-value=0.083 Score=34.25 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 33 e~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998763
No 387
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=89.35 E-value=0.09 Score=35.91 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=20.0
Q ss_pred chhhHHHHH-------hcCCcceeeeEEEeCCCCceeEee
Q psy11637 14 YQEKSLRKM-------FGNGRARSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 14 yQ~~av~~~-------~~~~~~~~~~i~~pTGsGKT~i~~ 46 (67)
-|++..+.+ ++ |.+...+..+.||||||+++.
T Consensus 65 ~Q~~Vy~~v~~lv~~~l~-G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 65 TNVDVFKEVGQLVQSSLD-GYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CHHHHHHHHHHHHGGGGG-TCCEEEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC-CceeEEEEECCCCCCCcEecc
Confidence 466666542 22 322344556999999998774
No 388
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.31 E-value=0.014 Score=43.30 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=19.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
.+.++.+|+|+|||.++-.+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999886665543
No 389
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.28 E-value=0.082 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 33 e~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998763
No 390
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.27 E-value=0.083 Score=33.48 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
+...|.+|.|+|||+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998764
No 391
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.22 E-value=0.083 Score=34.22 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 677899999999998763
No 392
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.18 E-value=0.084 Score=33.96 Aligned_cols=18 Identities=33% Similarity=0.209 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 577799999999998763
No 393
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.13 E-value=0.021 Score=37.87 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=21.9
Q ss_pred eeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
..++++++|+|||+++..++... +++++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45677999999999887666443 45666543
No 394
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.09 E-value=0.03 Score=37.14 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=22.4
Q ss_pred eeeEEEeCCCCceeEeeeeEEE-EeeeeEEEeec
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT-VRKRALVLCNS 62 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~-~~~~~lil~p~ 62 (67)
..+|.++.|||||+..-.+... .+.++.|+.|.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 4678899999999887544432 34566666654
No 395
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.06 E-value=0.1 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.1
Q ss_pred eeeEEEeCCCCceeEee
Q psy11637 30 SGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~ 46 (67)
+..+++|+|+|||+..-
T Consensus 4 ~v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999998763
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.04 E-value=0.051 Score=35.77 Aligned_cols=22 Identities=27% Similarity=0.045 Sum_probs=14.1
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...|.+|.|||||+++-.+...
T Consensus 7 iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3557799999999998666553
No 397
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.02 E-value=0.1 Score=35.85 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=20.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTVRKRA 56 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~~~~~ 56 (67)
...++.+|+|+|||+.+-.++...++.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 5677899999999998866554444443
No 398
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=89.00 E-value=0.1 Score=36.35 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=13.7
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
...+..+.||||||+++.
T Consensus 142 ~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 142 VAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp EEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCCceEeC
Confidence 344556999999998874
No 399
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.95 E-value=0.086 Score=35.37 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=20.8
Q ss_pred ceeeeEEEeCCCCceeEeeeeEEEEeeeeEE
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACCTVRKRALV 58 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~~~~~~~li 58 (67)
+....|++|+|+|||++.-.++....+.++.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~ 156 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFLGGSVLS 156 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhcCceEEE
Confidence 3677899999999998875444322444433
No 400
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.95 E-value=0.091 Score=34.94 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=17.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....+++|+|+|||++...++.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4667889999999998765543
No 401
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.95 E-value=0.095 Score=33.89 Aligned_cols=17 Identities=41% Similarity=0.333 Sum_probs=14.7
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
....|.+|.|+|||+..
T Consensus 27 e~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLL 43 (249)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 56778999999999876
No 402
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=88.91 E-value=0.094 Score=37.00 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=21.1
Q ss_pred chhhHHHHH--------hcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKM--------FGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~--------~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.. ++ |.+...+..+.||||||+++..
T Consensus 116 sQ~~Vy~~~~~plv~~~l~-GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 116 TQEHVYDSLGEEFLDHNFE-GYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCCEEEEEESSTTSSHHHHHTC
T ss_pred CHHHHHHhhhhhHHHHhhc-CCceEEEEeCCCCCCCCEEeec
Confidence 376666543 33 3334455569999999998753
No 403
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.88 E-value=0.096 Score=33.83 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp CEEEEECCSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998763
No 404
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.85 E-value=0.082 Score=32.82 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=14.4
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....+++|+|+|||+..-
T Consensus 2 ~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCEEEESCCSSCHHHHHH
T ss_pred CEEEEECCCCChHHHHHH
Confidence 356689999999998763
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.80 E-value=0.098 Score=31.63 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=14.8
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....+.+|.|+|||+..-
T Consensus 34 e~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998653
No 406
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.77 E-value=0.099 Score=36.13 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=16.7
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
.+.++.+|+|+|||+++-.++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 347888999999999885444
No 407
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.73 E-value=0.1 Score=33.91 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 42 ei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 577789999999998763
No 408
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.69 E-value=0.1 Score=34.06 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
+...|.+|.|+|||+..-
T Consensus 51 ei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHH
Confidence 567789999999998763
No 409
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.68 E-value=0.1 Score=33.94 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.9
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
....|.+|.|+|||+..
T Consensus 47 e~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57779999999999876
No 410
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.64 E-value=0.1 Score=34.27 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 48 e~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 567789999999998763
No 411
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.62 E-value=0.097 Score=33.96 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 34 e~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 567789999999998763
No 412
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.61 E-value=0.025 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=23.1
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE----eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV----RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~----~~~~lil~ 60 (67)
+..++++++|+|||+++..++..+ +.+++++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 456677999999999998776542 55666553
No 413
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.57 E-value=0.052 Score=37.34 Aligned_cols=22 Identities=32% Similarity=0.036 Sum_probs=17.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.-.++++++|||||+++-.+..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4567789999999998866543
No 414
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.51 E-value=0.051 Score=36.71 Aligned_cols=20 Identities=20% Similarity=-0.060 Sum_probs=15.2
Q ss_pred eeeEEEeCCCCceeEeeeeE
Q psy11637 30 SGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~ 49 (67)
..-|.+|+|||||+++-.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35567999999999875443
No 415
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.51 E-value=0.099 Score=33.56 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 567789999999998763
No 416
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=88.44 E-value=0.025 Score=43.24 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=25.7
Q ss_pred eeEEEeCCCCceeEeeeeEEEE------eeeeEEEeecce
Q psy11637 31 GVIVLPCGAGKSLVGVTACCTV------RKRALVLCNSGV 64 (67)
Q Consensus 31 ~~i~~pTGsGKT~i~~~~~~~~------~~~~lil~p~~~ 64 (67)
.+|.+..|||||.+.+.=+..+ ..+++++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 4788999999999887544321 368999998764
No 417
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=88.33 E-value=0.12 Score=35.71 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=21.0
Q ss_pred chhhHHHHH-------hcCCcceeeeEEEeCCCCceeEeee
Q psy11637 14 YQEKSLRKM-------FGNGRARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 14 yQ~~av~~~-------~~~~~~~~~~i~~pTGsGKT~i~~~ 47 (67)
-|++..+.+ ++ +.+...+..+.||||||+++..
T Consensus 96 ~Q~~Vy~~v~~lv~~~l~-G~N~tifAYGqTGSGKTyTM~G 135 (376)
T 2rep_A 96 GQDEVFEEIAMLVQSALD-GYPVCIFAYGQTGSGKTFTMEG 135 (376)
T ss_dssp CHHHHHHHHHHHHHGGGG-TCCEEEEEECSTTSSHHHHHTB
T ss_pred cchhhhhhHHHHHHHhcC-CCceEEEEeCCCCCCCceEeec
Confidence 476666542 22 3223445559999999998864
No 418
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.31 E-value=0.1 Score=33.48 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=14.7
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 25 e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 466689999999998763
No 419
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.28 E-value=0.17 Score=34.03 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=17.6
Q ss_pred ceeeeEEEeCCCCceeEeeeeEE
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
+....+++|+|+|||++...++.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35677889999999988755543
No 420
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.21 E-value=0.11 Score=33.94 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.3
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 46 e~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 577799999999998763
No 421
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=88.13 E-value=0.092 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.011 Sum_probs=14.4
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
...+..+.||||||+++..
T Consensus 82 ~tifAYGqTGSGKTyTm~G 100 (330)
T 2h58_A 82 VCIFAYGQTGAGKTYTMEG 100 (330)
T ss_dssp EEEEEESSTTSSHHHHHTB
T ss_pred EEEEeECCCCCCCcEEEec
Confidence 3455569999999988754
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.00 E-value=0.065 Score=38.22 Aligned_cols=18 Identities=39% Similarity=0.233 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 48 e~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 577789999999998763
No 423
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.79 E-value=0.032 Score=34.29 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=16.0
Q ss_pred eeeEEEeCCCCceeEeeeeEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...|++|+|||||+++..++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 355789999999988755543
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.65 E-value=0.15 Score=34.89 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=21.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil 59 (67)
....+++|+|+|||++...++... ++++++.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~ 191 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 191 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe
Confidence 457788999999999886554432 3455444
No 425
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.58 E-value=0.031 Score=35.67 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=24.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEeec
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCNS 62 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p~ 62 (67)
.--++.+|.|+|||.-.+..+.. .+.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45678899999999655554443 25678888765
No 426
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.54 E-value=0.15 Score=33.70 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
+...|.+|.|+|||+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 567789999999998763
No 427
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.41 E-value=0.065 Score=35.89 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.2
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
....|++|.|+|||+.+-.+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57788999999999876433
No 428
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.40 E-value=0.18 Score=30.27 Aligned_cols=27 Identities=19% Similarity=-0.007 Sum_probs=18.9
Q ss_pred hcCCcceeeeEEEeCCCCceeEeeeeE
Q psy11637 23 FGNGRARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 23 ~~~~~~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
+.-..+....+++++|+|||...-.++
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 433333678899999999998764443
No 429
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.39 E-value=0.029 Score=37.41 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=23.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil 59 (67)
.-.+..+..|.|||+++..++.. .+.+++++
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45667789999999999776654 36677765
No 430
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.38 E-value=0.028 Score=37.12 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
....+++++|+|||+++..++... +++++++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 455567999999999887665442 45666543
No 431
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.33 E-value=0.041 Score=35.06 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=27.5
Q ss_pred ccchhhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEE
Q psy11637 12 RPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTV---RKRALVL 59 (67)
Q Consensus 12 R~yQ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil 59 (67)
|.-+.+.-+..-+.. ..-.+...-.|.|||+++..++..+ +.+++++
T Consensus 4 ~~~~~~~a~~l~~~~-~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 4 RVTDEEIKERLGKIK-SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp CCCHHHHHHHHTTCS-CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ecchhhhhhhhccCC-eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 444444444443322 1234445778999999998776543 4576654
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.31 E-value=0.081 Score=33.15 Aligned_cols=22 Identities=27% Similarity=0.137 Sum_probs=17.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
....|.++.|||||+++-.+..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999998855543
No 433
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.24 E-value=0.072 Score=32.63 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.4
Q ss_pred eeeEEEeCCCCceeEeeeeEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...|.+++|||||+++-.+..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456889999999998855443
No 434
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.12 E-value=0.14 Score=33.70 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.6
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....+++|+|+|||+..-.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 567789999999998775443
No 435
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.10 E-value=0.029 Score=36.83 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=25.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeec
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNS 62 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~ 62 (67)
.--++.+|.|+|||+-++..+.+. +.+++++-|.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 456677999999998887776553 5678877664
No 436
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.00 E-value=0.061 Score=36.08 Aligned_cols=23 Identities=22% Similarity=-0.058 Sum_probs=18.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
....+++++|+|||+++..++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999998766543
No 437
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.94 E-value=0.14 Score=33.37 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
....|.+|.|+|||+..
T Consensus 31 e~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57778999999999876
No 438
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.92 E-value=0.15 Score=36.07 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHHHHhcCCcceeeeEEEeCCCCceeEeeeeE
Q psy11637 18 SLRKMFGNGRARSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 18 av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~ 49 (67)
+++-.+.-+.+.+..|++|+|+|||+++..++
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Ia 195 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 195 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHH
Confidence 34444444445789999999999999885443
No 439
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=86.89 E-value=0.024 Score=35.43 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=18.1
Q ss_pred eeeEEEeCCCCceeEeeeeEEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...|.+|.|||||.++-.++.++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 46678999999999987665544
No 440
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.60 E-value=0.06 Score=43.52 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=33.4
Q ss_pred hhHHHHHhc-CC--cceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEee
Q psy11637 16 EKSLRKMFG-NG--RARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCN 61 (67)
Q Consensus 16 ~~av~~~~~-~~--~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p 61 (67)
...+++++. .+ .+...+|.+|+|+|||..++.++.. .+.+++++.-
T Consensus 19 i~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~t 70 (1706)
T 3cmw_A 19 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 70 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEe
Confidence 456788876 32 2467889999999999999877654 2457777653
No 441
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=86.56 E-value=0.23 Score=28.98 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=9.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
-+.++++++|+|||.+...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4678899999999998876653
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.53 E-value=0.1 Score=33.05 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|.|+|||+++-.+...+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 566778999999999886655443
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.53 E-value=0.19 Score=35.78 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.7
Q ss_pred ceeeeEEEeCCCCceeEeeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~ 48 (67)
++...|++|+|+|||+..-.+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 367789999999999877433
No 444
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=86.45 E-value=0.12 Score=36.08 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=14.5
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
...+..+.||||||+++..
T Consensus 140 ~tifAYGqTGSGKTyTM~G 158 (412)
T 3u06_A 140 ICIFAYGQTGSGKTYTMDG 158 (412)
T ss_dssp EEEEEESSTTSSHHHHHTE
T ss_pred eEEEEecCCCCCCeeEecC
Confidence 3445559999999998754
No 445
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.42 E-value=0.19 Score=36.00 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.3
Q ss_pred ceeeeEEEeCCCCceeEeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~ 47 (67)
++...|++|+|+|||+..-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 36778999999999987643
No 446
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.40 E-value=0.082 Score=35.38 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=16.7
Q ss_pred ceeeeEEEeCCCCceeEeeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~ 48 (67)
+....|++|+|+|||++.-.+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEECCCCchHHHHHHHH
Confidence 367789999999999877433
No 447
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.36 E-value=0.26 Score=29.90 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=17.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...++++++|+|||.+...++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5677889999999988765554
No 448
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.30 E-value=0.033 Score=37.58 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=23.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil 59 (67)
...++.+..|.|||+++.+++.. .+++++++
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 45667789999999999776654 35677665
No 449
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.30 E-value=0.28 Score=29.85 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=22.0
Q ss_pred hhHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 16 EKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 16 ~~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.+.+.+.+........+++++.|+|||.+...++.
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 33334443322235677889999999988765543
No 450
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.29 E-value=0.036 Score=35.36 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=24.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil 59 (67)
+..++..++|.|||+.++.++.+. +.|++|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 567777999999999998887763 6677776
No 451
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.19 E-value=0.16 Score=36.21 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=16.6
Q ss_pred ceeeeEEEeCCCCceeEeeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~ 48 (67)
++...|++|+|+|||+..-.+
T Consensus 367 G~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEECCCCChHHHHHHHH
Confidence 367779999999999876433
No 452
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.17 E-value=0.027 Score=35.34 Aligned_cols=32 Identities=16% Similarity=-0.002 Sum_probs=22.2
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE--EeeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT--VRKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~--~~~~~lil~ 60 (67)
...++++..|+|||+++..++.. .+.+++++-
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34677899999999998766532 245665553
No 453
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.13 E-value=0.042 Score=35.73 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=24.6
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEeec
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCNS 62 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p~ 62 (67)
.--++.+|.|+|||+..+..+.+. +.+++++.|.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 567788999999998665555442 5678887764
No 454
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.09 E-value=0.044 Score=38.94 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=23.9
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVL 59 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil 59 (67)
+..++.+..|.|||+++.+++.. .+.|+|++
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlv 42 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEE
Confidence 45677799999999999877654 36678775
No 455
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.00 E-value=0.14 Score=40.09 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=17.7
Q ss_pred eeeeEEEeCCCCceeEeeeeEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
...-|++|||||||++...+..
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 6777999999999998765543
No 456
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.96 E-value=0.043 Score=39.21 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=24.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLCN 61 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~p 61 (67)
...++++++|+|||+++..++..+ +.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 356678999999999998777543 456666654
No 457
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.92 E-value=0.21 Score=35.67 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=16.6
Q ss_pred ceeeeEEEeCCCCceeEeeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~ 48 (67)
++...|++|+|+|||+..-.+
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 367779999999999877433
No 458
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.74 E-value=0.041 Score=38.57 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=22.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
...++++|.|+|||+++..++... +++++++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 345667999999999987666543 45666543
No 459
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=85.66 E-value=0.087 Score=35.38 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=23.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEe
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT---VRKRALVLC 60 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~ 60 (67)
.-.+..+..|.|||+++.+++.. .+.+++++-
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34666688999999999877654 366777653
No 460
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.66 E-value=0.043 Score=33.99 Aligned_cols=22 Identities=14% Similarity=-0.097 Sum_probs=17.1
Q ss_pred eeeEEEeCCCCceeEeeeeEEE
Q psy11637 30 SGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
...+.++.|||||++...++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999988766654
No 461
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.65 E-value=0.17 Score=36.33 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=16.5
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
.+.+|.++||||||+..-.+
T Consensus 168 pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999876443
No 462
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.63 E-value=0.22 Score=34.17 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 31 e~~~llGpsGsGKSTLLr 48 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLR 48 (359)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCchHHHHHH
Confidence 577789999999998753
No 463
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.60 E-value=0.12 Score=37.26 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
....+.++.|||||+++-.++..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 56778899999999988665544
No 464
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=85.47 E-value=0.13 Score=35.07 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=15.6
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
+..+|++|+|+|||.+.-+
T Consensus 27 ~~~~i~G~nG~GKstll~a 45 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDA 45 (430)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5678999999999987643
No 465
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.40 E-value=0.16 Score=33.68 Aligned_cols=36 Identities=11% Similarity=-0.098 Sum_probs=23.6
Q ss_pred hhhHHHH---HhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 15 QEKSLRK---MFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 15 Q~~av~~---~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
|+++++. .++.+....-++.+|.|+|||.++..++.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5555544 44444345788899999999988866654
No 466
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=85.29 E-value=0.15 Score=33.50 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=15.6
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
....+.+|.|+|||++.-.+
T Consensus 170 eiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHh
Confidence 56778999999999776433
No 467
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.23 E-value=0.21 Score=42.63 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.0
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
+..++++|||+|||.+.-
T Consensus 907 hGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 907 HGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 457888999999998864
No 468
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.10 E-value=0.2 Score=35.69 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.7
Q ss_pred ceeeeEEEeCCCCceeEeeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~ 48 (67)
++...|++|+|+|||+..-.+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l 389 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLF 389 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 367789999999999877443
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.94 E-value=0.082 Score=42.76 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=31.4
Q ss_pred hHHHHHhc-CC--cceeeeEEEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 17 KSLRKMFG-NG--RARSGVIVLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~-~~--~~~~~~i~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
..+++++. .+ .++..+|.+|+|+|||..++.++... +++++|+.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45677776 32 24567888999999999998876653 45676664
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.78 E-value=0.13 Score=36.20 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEee
Q psy11637 19 LRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLCN 61 (67)
Q Consensus 19 v~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~p 61 (67)
+++++..+ .+...+|.+|+|+|||+.+..++.. .+++++++..
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 55665432 2356788899999999988665432 2345555543
No 471
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=84.77 E-value=0.19 Score=36.81 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=16.5
Q ss_pred HHHHhcCCcceeeeEEEeCCCCceeEee
Q psy11637 19 LRKMFGNGRARSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 19 v~~~~~~~~~~~~~i~~pTGsGKT~i~~ 46 (67)
++.++++ .+...+..+.||||||+++.
T Consensus 455 v~~~~~G-~n~~i~ayGqtgsGKT~Tm~ 481 (715)
T 4h1g_A 455 IQCSLDG-TNVCVFAYGQTGSGKTFTMS 481 (715)
T ss_dssp HHHHHTT-CCEEEEEESSTTSSHHHHHH
T ss_pred HHHHhCC-ceEEEEccCCCCCchhhccC
Confidence 3444443 22334445999999998763
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.68 E-value=0.11 Score=37.64 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 118 e~~~LiG~NGsGKSTLlk 135 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVK 135 (607)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCChHHHHHH
Confidence 567789999999998763
No 473
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.54 E-value=0.25 Score=34.71 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=15.5
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|++|.|+|||+..-
T Consensus 139 e~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 678899999999998763
No 474
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=84.54 E-value=0.054 Score=36.39 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.8
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
+...|++|+|+|||++.
T Consensus 61 G~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIV 77 (415)
T ss_dssp SEEEEEESHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHH
Confidence 36778999999999887
No 475
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.53 E-value=0.039 Score=35.50 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=17.8
Q ss_pred eCCCCceeEeeeeEEEE---eeeeEEE
Q psy11637 36 PCGAGKSLVGVTACCTV---RKRALVL 59 (67)
Q Consensus 36 pTGsGKT~i~~~~~~~~---~~~~lil 59 (67)
-.|.|||+++..++..+ +.+++++
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 67999999998776543 5577654
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.48 E-value=0.077 Score=33.70 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=18.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.-.++.++.|+|||.+++.++.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45677899999999998877653
No 477
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.43 E-value=0.22 Score=34.04 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 42 e~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILR 59 (355)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 577789999999998763
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.33 E-value=0.23 Score=30.99 Aligned_cols=21 Identities=19% Similarity=-0.047 Sum_probs=16.0
Q ss_pred eeeeEEEeCCCCceeEeeeeE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTAC 49 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~ 49 (67)
....|.+|.|||||+.+-.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTG
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 456678999999998775443
No 479
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.29 E-value=0.24 Score=33.91 Aligned_cols=18 Identities=28% Similarity=0.312 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 30 e~~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLY 47 (362)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCchHHHHHH
Confidence 567789999999998763
No 480
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.21 E-value=0.23 Score=33.97 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.1
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 30 e~~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLL 47 (359)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEEcCCCchHHHHHH
Confidence 567789999999998763
No 481
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=84.13 E-value=0.19 Score=34.29 Aligned_cols=19 Identities=26% Similarity=0.059 Sum_probs=15.4
Q ss_pred eeeeEEEeCCCCceeEeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVT 47 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~ 47 (67)
+...+++|+|+|||.+.-+
T Consensus 27 g~~~i~G~nG~GKttll~a 45 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEA 45 (359)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHH
Confidence 4677899999999987643
No 482
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=84.05 E-value=0.15 Score=36.19 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=24.8
Q ss_pred hHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 17 KSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 17 ~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.+++.++--+.+.+..|.+|.|+|||.++..++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 4455555444558999999999999998855544
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.01 E-value=0.28 Score=34.49 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=24.4
Q ss_pred hhhHHHHHhc-C-CcceeeeEEEeCCCCceeEeeee
Q psy11637 15 QEKSLRKMFG-N-GRARSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 15 Q~~av~~~~~-~-~~~~~~~i~~pTGsGKT~i~~~~ 48 (67)
-..+++.+.- . ..+....|.+|+|+|||+.+..+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3557777664 2 23467889999999999988653
No 484
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.84 E-value=0.24 Score=35.47 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=16.8
Q ss_pred ceeeeEEEeCCCCceeEeeee
Q psy11637 28 ARSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 28 ~~~~~i~~pTGsGKT~i~~~~ 48 (67)
++...|++|+|+|||+..-.+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 367789999999999877443
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.84 E-value=0.36 Score=27.16 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.3
Q ss_pred eeeEEEeCCCCceeEeeee
Q psy11637 30 SGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~ 48 (67)
+.++.+++|+|||.+...+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5678999999999876444
No 486
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=83.82 E-value=0.29 Score=33.77 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=15.0
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
....|.+|.|+|||+..
T Consensus 48 e~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCChHHHHH
Confidence 67789999999999876
No 487
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.81 E-value=0.33 Score=27.49 Aligned_cols=19 Identities=32% Similarity=0.048 Sum_probs=15.2
Q ss_pred eeeEEEeCCCCceeEeeee
Q psy11637 30 SGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 30 ~~~i~~pTGsGKT~i~~~~ 48 (67)
+.++.+++|+|||.+...+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5678999999999876444
No 488
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=83.75 E-value=0.26 Score=29.21 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=4.4
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
-+.++++++|+|||.+...+...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46788899999999988766544
No 489
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.70 E-value=0.25 Score=33.88 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.8
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
....|.+|.|+|||+..
T Consensus 30 e~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTL 46 (372)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCcHHHHHH
Confidence 57778999999999876
No 490
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=83.69 E-value=0.075 Score=34.99 Aligned_cols=44 Identities=5% Similarity=-0.105 Sum_probs=28.8
Q ss_pred hHHHHHhcCC--cceeeeEEEeCCCCceeEeeeeEEE---EeeeeEEEe
Q psy11637 17 KSLRKMFGNG--RARSGVIVLPCGAGKSLVGVTACCT---VRKRALVLC 60 (67)
Q Consensus 17 ~av~~~~~~~--~~~~~~i~~pTGsGKT~i~~~~~~~---~~~~~lil~ 60 (67)
..+|+++..+ .+...++.+.+|+|||+.++.++.. .+.+++++.
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~ 56 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFS 56 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3567788754 2344556568899998777666543 366777765
No 491
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.67 E-value=0.26 Score=34.06 Aligned_cols=18 Identities=39% Similarity=0.346 Sum_probs=15.2
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
....|.+|.|+|||+..-
T Consensus 30 e~~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLR 47 (381)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEEcCCCchHHHHHH
Confidence 577789999999998763
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.59 E-value=0.085 Score=39.28 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=19.0
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.+|+|+|||+++-+++...
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 567889999999999886665443
No 493
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=83.54 E-value=0.12 Score=34.02 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=20.2
Q ss_pred eeeEEEe-CCCCceeEeeeeEEE---EeeeeEEE
Q psy11637 30 SGVIVLP-CGAGKSLVGVTACCT---VRKRALVL 59 (67)
Q Consensus 30 ~~~i~~p-TGsGKT~i~~~~~~~---~~~~~lil 59 (67)
..++..+ .|.|||+++..++.. .++++++|
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 3434444 689999999776654 35677765
No 494
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.53 E-value=0.39 Score=28.74 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=14.7
Q ss_pred eeeeEEEeCCCCceeEee
Q psy11637 29 RSGVIVLPCGAGKSLVGV 46 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~ 46 (67)
-...+++|.|+|||.+.-
T Consensus 30 ~kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 356789999999998763
No 495
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=83.50 E-value=0.039 Score=33.90 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=19.7
Q ss_pred EEeCCCCceeEeeeeEEEE---eeeeEEEe
Q psy11637 34 VLPCGAGKSLVGVTACCTV---RKRALVLC 60 (67)
Q Consensus 34 ~~pTGsGKT~i~~~~~~~~---~~~~lil~ 60 (67)
..-+|.|||+++..++..+ +.+++++=
T Consensus 8 s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 8 GTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp ESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 3457999999998777543 56777753
No 496
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.49 E-value=0.27 Score=33.76 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.7
Q ss_pred eeeeEEEeCCCCceeEe
Q psy11637 29 RSGVIVLPCGAGKSLVG 45 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~ 45 (67)
....|.+|.|+|||+..
T Consensus 38 e~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCChHHHHH
Confidence 57778999999999876
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.14 E-value=0.23 Score=31.04 Aligned_cols=24 Identities=25% Similarity=-0.042 Sum_probs=18.3
Q ss_pred eeeeEEEeCCCCceeEeeeeEEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCTV 52 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~~ 52 (67)
...++.++.|||||+.+-.+...+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345678999999999886665544
No 498
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=83.11 E-value=0.12 Score=38.01 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=25.0
Q ss_pred hHHHHHhcCCcceeeeEEEeCCCCceeEeeeeEE
Q psy11637 17 KSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50 (67)
Q Consensus 17 ~av~~~~~~~~~~~~~i~~pTGsGKT~i~~~~~~ 50 (67)
.+++.++--+++++..|.++.|+|||+++..++.
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~ 254 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAK 254 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHh
Confidence 4566665444557889999999999988765543
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=83.10 E-value=0.17 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=17.5
Q ss_pred eeeeEEEeCCCCceeEeeeeEEE
Q psy11637 29 RSGVIVLPCGAGKSLVGVTACCT 51 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~~~~ 51 (67)
.+.-+.+|+|||||+.+..++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 45567899999999988655443
No 500
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.92 E-value=0.41 Score=27.24 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=15.6
Q ss_pred eeeeEEEeCCCCceeEeeee
Q psy11637 29 RSGVIVLPCGAGKSLVGVTA 48 (67)
Q Consensus 29 ~~~~i~~pTGsGKT~i~~~~ 48 (67)
-+.++++++|+|||.+...+
T Consensus 4 ~~i~v~G~~~~GKssli~~l 23 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRF 23 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35788999999999876443
Done!