AmiGO: BLAST Results


BLAST match view associations BLAST with hay hay hay haywire	protein from Drosophila melanogaster	2.7e-27
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 Excision repair cross-complementing rodent repair deficiency, complementation group 3 (Xeroderma pigmentosum group B complementing), isoform CRA_b	protein from Homo sapiens	4.6e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 Uncharacterized protein	protein from Canis lupus familiaris	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Bos taurus	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Homo sapiens	5.5e-24
BLAST match view associations BLAST with LOC100517918 LOC100517918 LOC100517918 Uncharacterized protein	protein from Sus scrofa	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Pongo abelii	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Macaca fascicularis	5.5e-24
BLAST match view associations BLAST with Ercc3 Ercc3 Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3	gene from Rattus norvegicus	5.5e-24
BLAST match view associations BLAST with Ercc3 Ercc3 Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3	protein from Mus musculus	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Gallus gallus	5.6e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Gallus gallus	5.6e-24
BLAST match view associations BLAST with ercc3 ercc3 ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3	gene_product from Danio rerio	1.3e-23
BLAST match view associations BLAST with orf19.2857 orf19.2857 orf19.2857	gene_product from Candida albicans	1.9e-21
BLAST match view associations BLAST with repB repB repB transcription factor IIH subunit	gene from Dictyostelium discoideum	3.6e-21
BLAST match view associations BLAST with SSL2 SSL2 SSL2 Component of RNA polymerase transcription factor TFIIH holoenzyme	gene from Saccharomyces cerevisiae	3.9e-21
BLAST match view associations BLAST with Y66D12A.15 Y66D12A.15 Y66D12A.15	gene from Caenorhabditis elegans	5.7e-21
BLAST match view associations BLAST with XPB2 XPB2 XPB2 homolog of Xeroderma pigmentosum complementation group B 2	protein from Arabidopsis thaliana	1.4e-16
BLAST match view associations BLAST with XPB1 XPB1 XPB1 homolog of xeroderma pigmentosum complementation group B 1	protein from Arabidopsis thaliana	1.4e-16
BLAST match view associations BLAST with PF10_0369 PF10_0369 PF10_0369 helicase, putative	gene from Plasmodium falciparum	6.2e-14
BLAST match view associations BLAST with PF10_0369 PF10_0369 PF10_0369 DNA repair helicase rad25, putative	protein from Plasmodium falciparum 3D7	6.2e-14
BLAST match view associations BLAST with ercc3 ercc3 ercc3 DNA helicase Ercc3	protein from Mycobacterium tuberculosis	0.00061
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy11637
        (67 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0001179 - symbol:hay "haywire" species:7227 "Droso...   316  2.7e-27   1
UNIPROTKB|G3V1S1 - symbol:ERCC3 "Excision repair cross-co...   285  4.6e-24   1
UNIPROTKB|E2RN68 - symbol:ERCC3 "Uncharacterized protein"...   285  5.5e-24   1
UNIPROTKB|F1NDN0 - symbol:ERCC3 "TFIIH basal transcriptio...   285  5.5e-24   1
UNIPROTKB|Q1RMT1 - symbol:ERCC3 "TFIIH basal transcriptio...   285  5.5e-24   1
UNIPROTKB|P19447 - symbol:ERCC3 "TFIIH basal transcriptio...   285  5.5e-24   1
UNIPROTKB|F1RXZ5 - symbol:ERCC3 "Uncharacterized protein"...   285  5.5e-24   1
UNIPROTKB|Q5RA62 - symbol:ERCC3 "TFIIH basal transcriptio...   285  5.5e-24   1
UNIPROTKB|Q60HG1 - symbol:ERCC3 "TFIIH basal transcriptio...   285  5.5e-24   1
RGD|1307139 - symbol:Ercc3 "excision repair cross-complem...   285  5.5e-24   1
MGI|MGI:95414 - symbol:Ercc3 "excision repair cross-compl...   285  5.5e-24   1
UNIPROTKB|F1NZ23 - symbol:ERCC3 "TFIIH basal transcriptio...   285  5.6e-24   1
UNIPROTKB|Q5ZKK7 - symbol:ERCC3 "TFIIH basal transcriptio...   285  5.6e-24   1
ZFIN|ZDB-GENE-030131-3043 - symbol:ercc3 "excision repair...   282  1.3e-23   1
CGD|CAL0005155 - symbol:orf19.2857 species:5476 "Candida ...   262  1.9e-21   1
DICTYBASE|DDB_G0278729 - symbol:repB "transcription facto...   259  3.6e-21   1
POMBASE|SPAC17A5.06 - symbol:ptr8 "transcription factor T...   259  3.6e-21   1
SGD|S000001405 - symbol:SSL2 "Component of RNA polymerase...   259  3.9e-21   1
WB|WBGene00013441 - symbol:Y66D12A.15 species:6239 "Caeno...   257  5.7e-21   1
ASPGD|ASPL0000009371 - symbol:AN8201 species:162425 "Emer...   243  1.9e-19   1
TAIR|locus:2177891 - symbol:XPB2 "homolog of Xeroderma pi...   216  1.4e-16   1
TAIR|locus:2177901 - symbol:XPB1 "homolog of xeroderma pi...   216  1.4e-16   1
GENEDB_PFALCIPARUM|PF10_0369 - symbol:PF10_0369 "helicase...   192  6.2e-14   1
UNIPROTKB|Q8IJ31 - symbol:PF10_0369 "DNA repair helicase ...   192  6.2e-14   1
UNIPROTKB|O53873 - symbol:ercc3 "PROBABLE DNA HELICASE ER...    96  0.00061   1


>FB|FBgn0001179 [details] [associations]
            symbol:hay "haywire" species:7227 "Drosophila melanogaster"
            [GO:0008344 "adult locomotory behavior" evidence=IMP] [GO:0004386
            "helicase activity" evidence=ISS] [GO:0009411 "response to UV"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=ISS] [GO:0001113 "transcriptional open complex formation
            at RNA polymerase II promoter" evidence=ISS] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISS]
            [GO:0005675 "holo TFIIH complex" evidence=ISS;IDA] [GO:0001111
            "promoter clearance from RNA polymerase II promoter" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IC;NAS;IDA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IMP] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009411 EMBL:AE014296 GO:GO:0003677 GO:GO:0008344
            GO:GO:0004003 GO:GO:0004386 GO:GO:0006367 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0005675
            GO:GO:0000381 eggNOG:COG1061 GeneTree:ENSGT00390000002204 KO:K10843
            TIGRFAMs:TIGR00603 EMBL:S50517 EMBL:X68309 EMBL:L02965
            EMBL:AY051975 EMBL:BT025199 PIR:A44223 RefSeq:NP_001137931.1
            RefSeq:NP_524020.2 UniGene:Dm.5750 ProteinModelPortal:Q02870
            SMR:Q02870 IntAct:Q02870 STRING:Q02870 PaxDb:Q02870 PRIDE:Q02870
            EnsemblMetazoa:FBtr0076253 EnsemblMetazoa:FBtr0114599 GeneID:39202
            KEGG:dme:Dmel_CG8019 UCSC:CG8019-RA CTD:39202 FlyBase:FBgn0001179
            InParanoid:Q02870 OMA:SKINVIC OrthoDB:EOG4KKWHX PhylomeDB:Q02870
            GenomeRNAi:39202 NextBio:812457 Bgee:Q02870 GermOnline:CG8019
            Uniprot:Q02870
        Length = 798

 Score = 316 (116.3 bits), Expect = 2.7e-27, P = 2.7e-27
 Identities = 61/64 (95%), Positives = 63/64 (98%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC
Sbjct:   322 INIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 381

Query:    61 NSGV 64
             NSGV
Sbjct:   382 NSGV 385


>UNIPROTKB|G3V1S1 [details] [associations]
            symbol:ERCC3 "Excision repair cross-complementing rodent
            repair deficiency, complementation group 3 (Xeroderma pigmentosum
            group B complementing), isoform CRA_b" species:9606 "Homo sapiens"
            [GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
            evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
            [GO:0009650 "UV protection" evidence=IEA] [GO:0032564 "dATP
            binding" evidence=IEA] [GO:0042277 "peptide binding" evidence=IEA]
            InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
            Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005525 GO:GO:0005524 GO:GO:0003677
            GO:GO:0001666 EMBL:CH471103 GO:GO:0042277 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
            GO:GO:0008353 EMBL:AC110926 GO:GO:0009650 GO:GO:0032564
            GO:GO:0000441 TIGRFAMs:TIGR00603 UniGene:Hs.469872 HGNC:HGNC:3435
            ChiTaRS:ERCC3 ProteinModelPortal:G3V1S1 SMR:G3V1S1
            Ensembl:ENST00000493187 ArrayExpress:G3V1S1 Bgee:G3V1S1
            Uniprot:G3V1S1
        Length = 718

 Score = 285 (105.4 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   242 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 301

Query:    61 NSGV 64
             NS V
Sbjct:   302 NSAV 305


>UNIPROTKB|E2RN68 [details] [associations]
            symbol:ERCC3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0047485 "protein N-terminus binding"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5'
            DNA helicase activity" evidence=IEA] [GO:0035315 "hair cell
            differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
            repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006917 "induction
            of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=IEA]
            [GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
            "protein kinase activity" evidence=IEA] [GO:0000717
            "nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
            [GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
            GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
            GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
            GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
            GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:AAEX03011839
            Ensembl:ENSCAFT00000007273 Uniprot:E2RN68
        Length = 779

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   303 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 362

Query:    61 NSGV 64
             NS V
Sbjct:   363 NSAV 366


>UNIPROTKB|F1NDN0 [details] [associations]
            symbol:ERCC3 "TFIIH basal transcription factor complex
            helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
            "core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006289 GeneTree:ENSGT00390000002204
            TIGRFAMs:TIGR00603 EMBL:AADN02016819 EMBL:AADN02016820
            IPI:IPI00819385 Ensembl:ENSGALT00000038117 ArrayExpress:F1NDN0
            Uniprot:F1NDN0
        Length = 782

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   305 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 364

Query:    61 NSGV 64
             NS V
Sbjct:   365 NSAV 368


>UNIPROTKB|Q1RMT1 [details] [associations]
            symbol:ERCC3 "TFIIH basal transcription factor complex
            helicase XPB subunit" species:9913 "Bos taurus" [GO:0006468
            "protein phosphorylation" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0008353 "RNA polymerase II
            carboxy-terminal domain kinase activity" evidence=ISS] [GO:0000717
            "nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0004672
            "protein kinase activity" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0043138 "3'-5' DNA helicase activity"
            evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
            [GO:0033683 "nucleotide-excision repair, DNA incision"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0009411 "response to UV" evidence=ISS] [GO:0008104 "protein
            localization" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
            activity" evidence=ISS] [GO:0008022 "protein C-terminus binding"
            evidence=ISS] [GO:0006979 "response to oxidative stress"
            evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006289 "nucleotide-excision repair"
            evidence=ISS] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=ISS] [GO:0006281 "DNA repair"
            evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
            [GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0047485 "protein
            N-terminus binding" evidence=ISS] [GO:0009650 "UV protection"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0000439 "core TFIIH complex"
            evidence=IEA] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
            GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
            GO:GO:0045944 GO:GO:0016887 GO:GO:0004672 GO:GO:0006366
            GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0009650
            GO:GO:0005675 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
            EMBL:BC114729 IPI:IPI00704863 RefSeq:NP_001039453.1
            UniGene:Bt.19954 ProteinModelPortal:Q1RMT1 STRING:Q1RMT1
            PRIDE:Q1RMT1 Ensembl:ENSBTAT00000027687 GeneID:507984
            KEGG:bta:507984 CTD:2071 eggNOG:COG1061
            GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
            HOVERGEN:HBG051499 InParanoid:Q1RMT1 KO:K10843 OMA:SRVTDPQ
            OrthoDB:EOG4KD6KG NextBio:20868296 GO:GO:0043138 GO:GO:0006265
            GO:GO:0000717 TIGRFAMs:TIGR00603 Uniprot:Q1RMT1
        Length = 782

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365

Query:    61 NSGV 64
             NS V
Sbjct:   366 NSAV 369


>UNIPROTKB|P19447 [details] [associations]
            symbol:ERCC3 "TFIIH basal transcription factor complex
            helicase XPB subunit" species:9606 "Homo sapiens" [GO:0000439 "core
            TFIIH complex" evidence=IEA] [GO:0019048 "virus-host interaction"
            evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
            evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0032564
            "dATP binding" evidence=IEA] [GO:0042277 "peptide binding"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=NAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0047485 "protein
            N-terminus binding" evidence=IPI] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA;IMP;TAS] [GO:0006265 "DNA
            topological change" evidence=IMP] [GO:0005675 "holo TFIIH complex"
            evidence=IDA;TAS] [GO:0006917 "induction of apoptosis"
            evidence=IDA;IMP] [GO:0043138 "3'-5' DNA helicase activity"
            evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=TAS] [GO:0003677
            "DNA binding" evidence=TAS] [GO:0008094 "DNA-dependent ATPase
            activity" evidence=IDA;IMP] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=IDA;TAS] [GO:0004672 "protein
            kinase activity" evidence=IDA] [GO:0033683 "nucleotide-excision
            repair, DNA incision" evidence=IMP] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0008022 "protein C-terminus binding"
            evidence=IPI] [GO:0006289 "nucleotide-excision repair"
            evidence=IMP;TAS] [GO:0008104 "protein localization" evidence=IMP]
            [GO:0006281 "DNA repair" evidence=IMP;TAS] [GO:0035315 "hair cell
            differentiation" evidence=IMP] [GO:0000717 "nucleotide-excision
            repair, DNA duplex unwinding" evidence=IMP] [GO:0016887 "ATPase
            activity" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
            evidence=IMP] [GO:0009411 "response to UV" evidence=IMP]
            [GO:0006979 "response to oxidative stress" evidence=IMP]
            [GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
            activity" evidence=IDA] [GO:0008134 "transcription factor binding"
            evidence=IDA] [GO:0000718 "nucleotide-excision repair, DNA damage
            removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006360 "transcription from RNA polymerase I promoter"
            evidence=TAS] [GO:0006361 "transcription initiation from RNA
            polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
            elongation from RNA polymerase I promoter" evidence=TAS]
            [GO:0006363 "termination of RNA polymerase I transcription"
            evidence=TAS] [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
            elongation from RNA polymerase II promoter" evidence=TAS]
            [GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0050434 "positive regulation of
            viral transcription" evidence=TAS] Reactome:REACT_216
            Reactome:REACT_71 InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
            Reactome:REACT_116125 GO:GO:0009411 GO:GO:0019048 GO:GO:0008104
            GO:GO:0016032 GO:GO:0006979 GO:GO:0006917 GO:GO:0003684
            GO:GO:0001666 Reactome:REACT_1675 GO:GO:0045944 GO:GO:0016887
            EMBL:CH471103 GO:GO:0042277 GO:GO:0004003 GO:GO:0006368
            GO:GO:0008134 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0000075 Reactome:REACT_1788 GO:GO:0008353
            EMBL:AC110926 GO:GO:0009650 GO:GO:0005675 GO:GO:0006370
            GO:GO:0000718 GO:GO:0050434 GO:GO:0006363 GO:GO:0006362
            GO:GO:0006361 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
            GO:GO:0033683 MIM:601675 Orphanet:453 Orphanet:670 Orphanet:220295
            GO:GO:0000441 CTD:2071 eggNOG:COG1061 HOGENOM:HOG000160172
            HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
            GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
            EMBL:M31899 EMBL:AY163769 EMBL:BC008820 IPI:IPI00747053 PIR:A35661
            RefSeq:NP_000113.1 UniGene:Hs.469872 ProteinModelPortal:P19447
            SMR:P19447 DIP:DIP-83N IntAct:P19447 STRING:P19447
            PhosphoSite:P19447 DMDM:119541 PaxDb:P19447 PRIDE:P19447 DNASU:2071
            Ensembl:ENST00000285398 GeneID:2071 KEGG:hsa:2071 UCSC:uc002toe.1
            GeneCards:GC02M128014 HGNC:HGNC:3435 HPA:CAB037153 MIM:133510
            MIM:610651 neXtProt:NX_P19447 Orphanet:276252 PharmGKB:PA27849
            InParanoid:P19447 PhylomeDB:P19447 ChiTaRS:ERCC3 GenomeRNAi:2071
            NextBio:8425 ArrayExpress:P19447 Bgee:P19447 CleanEx:HS_ERCC3
            Genevestigator:P19447 GermOnline:ENSG00000163161 Uniprot:P19447
        Length = 782

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365

Query:    61 NSGV 64
             NS V
Sbjct:   366 NSAV 369


>UNIPROTKB|F1RXZ5 [details] [associations]
            symbol:ERCC3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5' DNA
            helicase activity" evidence=IEA] [GO:0035315 "hair cell
            differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
            repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006917 "induction
            of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=IEA]
            [GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
            "protein kinase activity" evidence=IEA] [GO:0000717
            "nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
            [GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
            GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
            GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
            GeneTree:ENSGT00390000002204 KO:K10843 OMA:SRVTDPQ GO:GO:0043138
            GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:FP102347
            EMBL:FP340363 RefSeq:XP_003133336.2 Ensembl:ENSSSCT00000017121
            GeneID:100517918 KEGG:ssc:100517918 Uniprot:F1RXZ5
        Length = 782

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365

Query:    61 NSGV 64
             NS V
Sbjct:   366 NSAV 369


>UNIPROTKB|Q5RA62 [details] [associations]
            symbol:ERCC3 "TFIIH basal transcription factor complex
            helicase XPB subunit" species:9601 "Pongo abelii" [GO:0000075 "cell
            cycle checkpoint" evidence=ISS] [GO:0000717 "nucleotide-excision
            repair, DNA duplex unwinding" evidence=ISS] [GO:0005675 "holo TFIIH
            complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=ISS] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=ISS]
            [GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0006468 "protein phosphorylation" evidence=ISS] [GO:0006917
            "induction of apoptosis" evidence=ISS] [GO:0006979 "response to
            oxidative stress" evidence=ISS] [GO:0008022 "protein C-terminus
            binding" evidence=ISS] [GO:0008104 "protein localization"
            evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0033683
            "nucleotide-excision repair, DNA incision" evidence=ISS]
            [GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0043138
            "3'-5' DNA helicase activity" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0047485 "protein N-terminus binding"
            evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
            [GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
            [GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
            activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
            GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
            GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
            GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
            GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 CTD:2071
            HOVERGEN:HBG051499 KO:K10843 GO:GO:0043138 GO:GO:0006265
            GO:GO:0000717 TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:CR859159
            RefSeq:NP_001125797.1 UniGene:Pab.19064 ProteinModelPortal:Q5RA62
            GeneID:100172725 KEGG:pon:100172725 Uniprot:Q5RA62
        Length = 782

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365

Query:    61 NSGV 64
             NS V
Sbjct:   366 NSAV 369


>UNIPROTKB|Q60HG1 [details] [associations]
            symbol:ERCC3 "TFIIH basal transcription factor complex
            helicase XPB subunit" species:9541 "Macaca fascicularis"
            [GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0000717
            "nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
            [GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0006265 "DNA topological
            change" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
            [GO:0006283 "transcription-coupled nucleotide-excision repair"
            evidence=ISS] [GO:0006289 "nucleotide-excision repair"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006468 "protein phosphorylation"
            evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
            [GO:0006979 "response to oxidative stress" evidence=ISS]
            [GO:0008022 "protein C-terminus binding" evidence=ISS] [GO:0008104
            "protein localization" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0033683 "nucleotide-excision repair, DNA incision"
            evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
            [GO:0043138 "3'-5' DNA helicase activity" evidence=ISS] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0047485 "protein N-terminus binding"
            evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
            [GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
            [GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
            activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
            GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
            GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
            GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
            GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 HOVERGEN:HBG051499
            GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
            EMBL:AB125166 ProteinModelPortal:Q60HG1 Uniprot:Q60HG1
        Length = 782

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365

Query:    61 NSGV 64
             NS V
Sbjct:   366 NSAV 369


>RGD|1307139 [details] [associations]
            symbol:Ercc3 "excision repair cross-complementing rodent repair
            deficiency, complementation group 3" species:10116 "Rattus
            norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
            [GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0000441
            "SSL2-core TFIIH complex" evidence=IDA] [GO:0000717
            "nucleotide-excision repair, DNA duplex unwinding"
            evidence=IEA;ISO] [GO:0001666 "response to hypoxia" evidence=IEP]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IDA] [GO:0004672 "protein kinase
            activity" evidence=ISO;ISS] [GO:0005524 "ATP binding" evidence=IDA]
            [GO:0005525 "GTP binding" evidence=IDA] [GO:0005675 "holo TFIIH
            complex" evidence=ISO;ISS] [GO:0006200 "ATP catabolic process"
            evidence=IDA] [GO:0006265 "DNA topological change"
            evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
            [GO:0006283 "transcription-coupled nucleotide-excision repair"
            evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
            evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
            evidence=IDA] [GO:0006917 "induction of apoptosis"
            evidence=IEA;ISO] [GO:0006979 "response to oxidative stress"
            evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
            evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
            evidence=ISO;ISS] [GO:0008104 "protein localization"
            evidence=IEA;ISO] [GO:0008134 "transcription factor binding"
            evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
            domain kinase activity" evidence=ISO;ISS;IDA] [GO:0009411 "response
            to UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
            [GO:0016887 "ATPase activity" evidence=ISO;IDA] [GO:0032564 "dATP
            binding" evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
            incision" evidence=IEA;ISO] [GO:0035315 "hair cell differentiation"
            evidence=IEA;ISO] [GO:0042277 "peptide binding" evidence=IDA]
            [GO:0043138 "3'-5' DNA helicase activity" evidence=IEA;ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0047485 "protein
            N-terminus binding" evidence=IEA;ISO] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 RGD:1307139
            GO:GO:0005525 GO:GO:0005524 GO:GO:0008104 GO:GO:0006979
            GO:GO:0006917 GO:GO:0003677 GO:GO:0001666 GO:GO:0045944
            GO:GO:0006366 GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353
            GO:GO:0009650 GO:GO:0005675 GO:GO:0006283 GO:GO:0032564
            GO:GO:0035315 GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
            GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
            HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
            GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
            HSSP:O29889 EMBL:BC098856 IPI:IPI00363457 RefSeq:NP_001026814.1
            UniGene:Rn.44012 ProteinModelPortal:Q4G005 STRING:Q4G005
            PhosphoSite:Q4G005 PRIDE:Q4G005 Ensembl:ENSRNOT00000018422
            GeneID:291703 KEGG:rno:291703 UCSC:RGD:1307139 InParanoid:Q4G005
            NextBio:633050 Genevestigator:Q4G005 Uniprot:Q4G005
        Length = 782

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   306 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 365

Query:    61 NSGV 64
             NS V
Sbjct:   366 NSAV 369


>MGI|MGI:95414 [details] [associations]
            symbol:Ercc3 "excision repair cross-complementing rodent
            repair deficiency, complementation group 3" species:10090 "Mus
            musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000439 "core
            TFIIH complex" evidence=IEA] [GO:0000441 "SSL2-core TFIIH complex"
            evidence=ISO] [GO:0000717 "nucleotide-excision repair, DNA duplex
            unwinding" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=ISO] [GO:0005525 "GTP binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005675 "holo TFIIH complex"
            evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
            [GO:0006265 "DNA topological change" evidence=ISO] [GO:0006281 "DNA
            repair" evidence=ISO] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=ISO] [GO:0006289
            "nucleotide-excision repair" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
            [GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
            "response to DNA damage stimulus" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=ISO] [GO:0008022 "protein
            C-terminus binding" evidence=ISO] [GO:0008104 "protein
            localization" evidence=ISO] [GO:0008353 "RNA polymerase II
            carboxy-terminal domain kinase activity" evidence=ISO] [GO:0009411
            "response to UV" evidence=ISO] [GO:0009650 "UV protection"
            evidence=IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISO] [GO:0032564 "dATP
            binding" evidence=ISO] [GO:0033683 "nucleotide-excision repair, DNA
            incision" evidence=ISO] [GO:0035315 "hair cell differentiation"
            evidence=ISO] [GO:0042277 "peptide binding" evidence=ISO]
            [GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0047485 "protein N-terminus binding"
            evidence=ISO] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:95414 GO:GO:0005525
            GO:GO:0005524 GO:GO:0008104 GO:GO:0006979 GO:GO:0006917
            GO:GO:0003677 GO:GO:0001666 GO:GO:0045944 GO:GO:0006366
            GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353 GO:GO:0009650
            GO:GO:0005675 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
            GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
            GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
            HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
            GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
            EMBL:S71186 EMBL:BC016595 EMBL:BC026575 IPI:IPI00113070 PIR:A48994
            RefSeq:NP_598419.1 UniGene:Mm.282335 ProteinModelPortal:P49135
            SMR:P49135 STRING:P49135 PhosphoSite:P49135 PaxDb:P49135
            PRIDE:P49135 DNASU:13872 Ensembl:ENSMUST00000025241 GeneID:13872
            KEGG:mmu:13872 UCSC:uc008eje.1 InParanoid:P49135 NextBio:284792
            Bgee:P49135 Genevestigator:P49135 GermOnline:ENSMUSG00000024382
            Uniprot:P49135
        Length = 783

 Score = 285 (105.4 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   307 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 366

Query:    61 NSGV 64
             NS V
Sbjct:   367 NSAV 370


>UNIPROTKB|F1NZ23 [details] [associations]
            symbol:ERCC3 "TFIIH basal transcription factor complex
            helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
            "core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000075
            "cell cycle checkpoint" evidence=IEA] [GO:0000717
            "nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
            [GO:0004672 "protein kinase activity" evidence=IEA] [GO:0006265
            "DNA topological change" evidence=IEA] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
            [GO:0006979 "response to oxidative stress" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008104
            "protein localization" evidence=IEA] [GO:0008134 "transcription
            factor binding" evidence=IEA] [GO:0009650 "UV protection"
            evidence=IEA] [GO:0033683 "nucleotide-excision repair, DNA
            incision" evidence=IEA] [GO:0035315 "hair cell differentiation"
            evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0047485 "protein
            N-terminus binding" evidence=IEA] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
            GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
            GO:GO:0009650 GO:GO:0006283 GO:GO:0033683
            GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
            GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 IPI:IPI00585393
            EMBL:AADN02016819 EMBL:AADN02016820 Ensembl:ENSGALT00000018775
            ArrayExpress:F1NZ23 Uniprot:F1NZ23
        Length = 787

 Score = 285 (105.4 bits), Expect = 5.6e-24, P = 5.6e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   303 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 362

Query:    61 NSGV 64
             NS V
Sbjct:   363 NSAV 366


>UNIPROTKB|Q5ZKK7 [details] [associations]
            symbol:ERCC3 "TFIIH basal transcription factor complex
            helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
            "core TFIIH complex" evidence=IEA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006468 "protein
            phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase II
            carboxy-terminal domain kinase activity" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0004672 "protein kinase activity" evidence=ISS] [GO:0005675
            "holo TFIIH complex" evidence=ISS] [GO:0008094 "DNA-dependent
            ATPase activity" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
            InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
            Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006281 GO:GO:0006468 GO:GO:0006366 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
            GO:GO:0005675 Reactome:REACT_115612 CTD:2071 eggNOG:COG1061
            HOGENOM:HOG000160172 HOVERGEN:HBG051499 KO:K10843 OrthoDB:EOG4KD6KG
            TIGRFAMs:TIGR00603 EMBL:AJ720077 IPI:IPI00585393
            RefSeq:NP_001006523.1 UniGene:Gga.4898 HSSP:O29889
            ProteinModelPortal:Q5ZKK7 STRING:Q5ZKK7 GeneID:424226
            KEGG:gga:424226 InParanoid:Q5ZKK7 NextBio:20826586 Uniprot:Q5ZKK7
        Length = 788

 Score = 285 (105.4 bits), Expect = 5.6e-24, P = 5.6e-24
 Identities = 57/64 (89%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   303 INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 362

Query:    61 NSGV 64
             NS V
Sbjct:   363 NSAV 366


>ZFIN|ZDB-GENE-030131-3043 [details] [associations]
            symbol:ercc3 "excision repair cross-complementing
            rodent repair deficiency, complementation group 3" species:7955
            "Danio rerio" [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0005506 "iron ion
            binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0016705 "oxidoreductase activity, acting on
            paired donors, with incorporation or reduction of molecular oxygen"
            evidence=IEA] [GO:0020037 "heme binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
            TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=ISS] [GO:0006265 "DNA
            topological change" evidence=ISS] [GO:0043138 "3'-5' DNA helicase
            activity" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
            [GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
            activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
            evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
            "response to DNA damage stimulus" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001128 InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR017972
            Pfam:PF00067 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS00086 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-030131-3043 GO:GO:0005524 GO:GO:0005506 GO:GO:0009055
            GO:GO:0003677 GO:GO:0020037 Gene3D:1.10.630.10 SUPFAM:SSF48264
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006289 GO:GO:0016705 GeneTree:ENSGT00390000002204
            TIGRFAMs:TIGR00603 EMBL:BX927387 IPI:IPI00994241
            Ensembl:ENSDART00000124565 ArrayExpress:E7FFE5 Bgee:E7FFE5
            Uniprot:E7FFE5
        Length = 843

 Score = 282 (104.3 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 56/64 (87%), Positives = 59/64 (92%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + +DLKP+AVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA CTVRKR LVL 
Sbjct:   305 INMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG 364

Query:    61 NSGV 64
             NS V
Sbjct:   365 NSSV 368


>CGD|CAL0005155 [details] [associations]
            symbol:orf19.2857 species:5476 "Candida albicans" [GO:0005675
            "holo TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
            repair factor 3 complex" evidence=IEA] [GO:0000439 "core TFIIH
            complex" evidence=IEA] [GO:0010525 "regulation of transposition,
            RNA-mediated" evidence=IEA] [GO:0070816 "phosphorylation of RNA
            polymerase II C-terminal domain" evidence=IEA] [GO:0001111
            "promoter clearance from RNA polymerase II promoter" evidence=IEA]
            [GO:0034644 "cellular response to UV" evidence=IEA] [GO:0016973
            "poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0000019
            "regulation of mitotic recombination" evidence=IEA] [GO:0033683
            "nucleotide-excision repair, DNA incision" evidence=IEA]
            [GO:0001113 "transcriptional open complex formation at RNA
            polymerase II promoter" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005155
            GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000080 EMBL:AACQ01000079
            GO:GO:0006289 eggNOG:COG1061 KO:K10843 TIGRFAMs:TIGR00603
            RefSeq:XP_715788.1 RefSeq:XP_715839.1 ProteinModelPortal:Q5A1Y8
            STRING:Q5A1Y8 GeneID:3642537 GeneID:3642603 KEGG:cal:CaO19.10376
            KEGG:cal:CaO19.2857 Uniprot:Q5A1Y8
        Length = 843

 Score = 262 (97.3 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/64 (75%), Positives = 55/64 (85%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKPS  +RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG+TA CT+RK  +VLC
Sbjct:   345 LEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIRKSVIVLC 404

Query:    61 NSGV 64
              S V
Sbjct:   405 TSSV 408


>DICTYBASE|DDB_G0278729 [details] [associations]
            symbol:repB "transcription factor IIH subunit"
            species:44689 "Dictyostelium discoideum" [GO:0009650 "UV
            protection" evidence=IMP] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA;IEP] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=ISS] [GO:0006289
            "nucleotide-excision repair" evidence=IEA;ISS] [GO:0005675 "holo
            TFIIH complex" evidence=ISS] [GO:0003684 "damaged DNA binding"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
            TFIIH complex" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex
            portion of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core
            TFIIH complex portion of NEF3 complex" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
            Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0278729 GO:GO:0005524 GO:GO:0006355
            GenomeReviews:CM000152_GR GO:GO:0003684 GO:GO:0006366
            EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0006289 GO:GO:0009650 GO:GO:0000443
            GO:GO:0000442 eggNOG:COG1061 KO:K10843 OMA:SRVTDPQ
            TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:U77065 RefSeq:XP_647819.1
            ProteinModelPortal:O00835 STRING:O00835 EnsemblProtists:DDB0214830
            GeneID:8621779 KEGG:ddi:DDB_G0278729 InParanoid:O00835
            ProtClustDB:CLSZ2729383 Uniprot:O00835
        Length = 800

 Score = 259 (96.2 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 48/64 (75%), Positives = 55/64 (85%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+ ++RPYQEKSL KMFGNGRARSG+IVLPCGAGKSL G+TA CTV+K  LVLC
Sbjct:   308 LNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSGITAACTVKKSILVLC 367

Query:    61 NSGV 64
              S V
Sbjct:   368 TSAV 371


>POMBASE|SPAC17A5.06 [details] [associations]
            symbol:ptr8 "transcription factor TFIIH complex ERCC-3
            subunit" species:4896 "Schizosaccharomyces pombe" [GO:0000112
            "nucleotide-excision repair factor 3 complex" evidence=ISO]
            [GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000991 "core
            RNA polymerase II binding transcription factor activity"
            evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
            "ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=ISS]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from
            nucleus" evidence=IGI;IMP] [GO:0034644 "cellular response to UV"
            evidence=IMP] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17A5.06 GO:GO:0005524
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
            GO:GO:0034644 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0000991 GO:GO:0005675 GO:GO:0006283
            GO:GO:0016973 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
            OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AB027988 PIR:T37821
            RefSeq:NP_593474.1 ProteinModelPortal:O13768 IntAct:O13768
            STRING:O13768 EnsemblFungi:SPAC17A5.06.1 GeneID:2542174
            KEGG:spo:SPAC17A5.06 OrthoDB:EOG4QJVWB NextBio:20803245
            GO:GO:0000439 GO:GO:0000112 Uniprot:O13768
        Length = 804

 Score = 259 (96.2 bits), Expect = 3.6e-21, P = 3.6e-21
 Identities = 47/64 (73%), Positives = 55/64 (85%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKPS  +RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG+TA CT++K  +VLC
Sbjct:   314 LPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLC 373

Query:    61 NSGV 64
              S V
Sbjct:   374 TSSV 377


>SGD|S000001405 [details] [associations]
            symbol:SSL2 "Component of RNA polymerase transcription factor
            TFIIH holoenzyme" species:4932 "Saccharomyces cerevisiae"
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0010525
            "regulation of transposition, RNA-mediated" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
            export from nucleus" evidence=IMP] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA;IDA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000019
            "regulation of mitotic recombination" evidence=IMP] [GO:0033683
            "nucleotide-excision repair, DNA incision" evidence=IDA]
            [GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000990 "core
            RNA polymerase binding transcription factor activity" evidence=IC]
            [GO:0070816 "phosphorylation of RNA polymerase II C-terminal
            domain" evidence=IDA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0001113 "transcriptional
            open complex formation at RNA polymerase II promoter" evidence=IMP]
            [GO:0001111 "promoter clearance from RNA polymerase II promoter"
            evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
            evidence=IEA;IDA] [GO:0000112 "nucleotide-excision repair factor 3
            complex" evidence=IDA] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 SGD:S000001405 GO:GO:0005524
            GO:GO:0003677 EMBL:BK006942 GO:GO:0004003 EMBL:Z38059
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0070816
            GO:GO:0005675 GO:GO:0016973 GO:GO:0033683 eggNOG:COG1061
            GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
            OMA:SRVTDPQ TIGRFAMs:TIGR00603 OrthoDB:EOG4QJVWB GO:GO:0000439
            GO:GO:0000112 GO:GO:0010525 GO:GO:0001113 GO:GO:0000019 EMBL:M94176
            EMBL:L01414 EMBL:AY692883 PIR:S31272 RefSeq:NP_012123.1
            ProteinModelPortal:Q00578 SMR:Q00578 DIP:DIP-731N IntAct:Q00578
            MINT:MINT-573804 STRING:Q00578 PaxDb:Q00578 PeptideAtlas:Q00578
            EnsemblFungi:YIL143C GeneID:854663 KEGG:sce:YIL143C CYGD:YIL143c
            NextBio:977238 Genevestigator:Q00578 GermOnline:YIL143C
            GO:GO:0001111 Uniprot:Q00578
        Length = 843

 Score = 259 (96.2 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 47/64 (73%), Positives = 55/64 (85%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKPS  +RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG+TA CT++K  +VLC
Sbjct:   352 LDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLC 411

Query:    61 NSGV 64
              S V
Sbjct:   412 TSSV 415


>WB|WBGene00013441 [details] [associations]
            symbol:Y66D12A.15 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 eggNOG:COG1061
            GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
            TIGRFAMs:TIGR00603 OMA:SKINVIC EMBL:AL161712 RefSeq:NP_499487.1
            ProteinModelPortal:Q95PZ4 SMR:Q95PZ4 STRING:Q95PZ4 PaxDb:Q95PZ4
            EnsemblMetazoa:Y66D12A.15 GeneID:176584 KEGG:cel:CELE_Y66D12A.15
            UCSC:Y66D12A.15 CTD:176584 WormBase:Y66D12A.15 InParanoid:Q95PZ4
            NextBio:893182 Uniprot:Q95PZ4
        Length = 789

 Score = 257 (95.5 bits), Expect = 5.7e-21, P = 5.7e-21
 Identities = 52/62 (83%), Positives = 53/62 (85%)

Query:     3 IDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNS 62
             IDLKPS  LRPYQEKSLRKMFGN RARSGVIVLPCGAGK+LVGVTA  TV KR LVL NS
Sbjct:   315 IDLKPSTTLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVGVTAVTTVNKRCLVLANS 374

Query:    63 GV 64
              V
Sbjct:   375 NV 376


>ASPGD|ASPL0000009371 [details] [associations]
            symbol:AN8201 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016973
            "poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0034644
            "cellular response to UV" evidence=IEA] [GO:0006367 "transcription
            initiation from RNA polymerase II promoter" evidence=IEA]
            InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
            Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006289 OMA:SRVTDPQ TIGRFAMs:TIGR00603
            EnsemblFungi:CADANIAT00004248 Uniprot:C8V766
        Length = 818

 Score = 243 (90.6 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/64 (67%), Positives = 55/64 (85%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + IDLKP+A +R YQEKSL KMFGNGRA+SG+IVLPCGAGK+LVG+TA CT++K  ++LC
Sbjct:   317 LDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGITAACTIKKGTIILC 376

Query:    61 NSGV 64
              S +
Sbjct:   377 TSSM 380


>TAIR|locus:2177891 [details] [associations]
            symbol:XPB2 "homolog of Xeroderma pigmentosum
            complementation group B 2" species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0010224 "response to UV-B" evidence=IEP] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0006289
            EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
            OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AY550923 PIR:S71206
            ProtClustDB:CLSN2689906 EMBL:AF308595 IPI:IPI00545479
            RefSeq:NP_568591.1 UniGene:At.24438 ProteinModelPortal:Q9FUG4
            SMR:Q9FUG4 STRING:Q9FUG4 PaxDb:Q9FUG4 PRIDE:Q9FUG4
            EnsemblPlants:AT5G41360.1 GeneID:834138 KEGG:ath:AT5G41360
            GeneFarm:4454 TAIR:At5g41360 InParanoid:Q9FUG4 PhylomeDB:Q9FUG4
            Genevestigator:Q9FUG4 GermOnline:AT5G41360 Uniprot:Q9FUG4
        Length = 766

 Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + ++LKP A  RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVGV+A   ++K  L L 
Sbjct:   272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLA 331

Query:    61 NSGV 64
              + V
Sbjct:   332 TNAV 335


>TAIR|locus:2177901 [details] [associations]
            symbol:XPB1 "homolog of xeroderma pigmentosum
            complementation group B 1" species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] [GO:0009636 "response to toxic substance"
            evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009411 "response to UV"
            evidence=IEP] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009411
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
            EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
            TIGRFAMs:TIGR00603 EMBL:U29168 EMBL:AY550923 EMBL:AY039547
            EMBL:AY113008 IPI:IPI00536770 PIR:S71206 RefSeq:NP_568592.1
            UniGene:At.6482 ProteinModelPortal:Q38861 SMR:Q38861 IntAct:Q38861
            STRING:Q38861 PaxDb:Q38861 PRIDE:Q38861 EnsemblPlants:AT5G41370.1
            GeneID:834139 KEGG:ath:AT5G41370 GeneFarm:4453 TAIR:At5g41370
            InParanoid:Q38861 OMA:YAYTIVD PhylomeDB:Q38861
            ProtClustDB:CLSN2689906 Genevestigator:Q38861 GermOnline:AT5G41370
            Uniprot:Q38861
        Length = 767

 Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:     1 MTIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
             + ++LKP A  RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVGV+A   ++K  L L 
Sbjct:   272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLA 331

Query:    61 NSGV 64
              + V
Sbjct:   332 TNAV 335


>GENEDB_PFALCIPARUM|PF10_0369 [details] [associations]
            symbol:PF10_0369 "helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0003684 "damaged DNA
            binding" evidence=ISS] [GO:0020011 "apicoplast" evidence=RCA]
            InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
            Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
            EMBL:AE014185 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843 TIGRFAMs:TIGR00603
            RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
            EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
            EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
            Uniprot:Q8IJ31
        Length = 886

 Score = 192 (72.6 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/60 (61%), Positives = 45/60 (75%)

Query:     5 LKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGV 64
             LK    +R YQEK+LRKMF NGR+RSG+IVLPCG GK+L G+TA  T++K AL L  S V
Sbjct:   381 LKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTGITAASTIKKSALFLTTSAV 440


>UNIPROTKB|Q8IJ31 [details] [associations]
            symbol:PF10_0369 "DNA repair helicase rad25, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR001161 InterPro:IPR001650
            InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
            GO:GO:0004003 EMBL:AE014185 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843
            TIGRFAMs:TIGR00603 RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
            EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
            EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
            Uniprot:Q8IJ31
        Length = 886

 Score = 192 (72.6 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/60 (61%), Positives = 45/60 (75%)

Query:     5 LKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGV 64
             LK    +R YQEK+LRKMF NGR+RSG+IVLPCG GK+L G+TA  T++K AL L  S V
Sbjct:   381 LKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTGITAASTIKKSALFLTTSAV 440


>UNIPROTKB|O53873 [details] [associations]
            symbol:ercc3 "PROBABLE DNA HELICASE ERCC3" species:1773
            "Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR001161
            InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
            PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677
            EMBL:BX842574 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006289 KO:K10843 OMA:YAYTIVD EMBL:AL123456
            PIR:E70815 RefSeq:NP_215376.2 RefSeq:YP_006514212.1
            ProteinModelPortal:O53873 SMR:O53873 PRIDE:O53873
            EnsemblBacteria:EBMYCT00000003571 GeneID:13318763 GeneID:885425
            KEGG:mtu:Rv0861c KEGG:mtv:RVBD_0861c PATRIC:18150439
            TubercuList:Rv0861c HOGENOM:HOG000239540 ProtClustDB:CLSK871863
            Uniprot:O53873
        Length = 542

 Score = 96 (38.9 bits), Expect = 0.00061, P = 0.00061
 Identities = 22/49 (44%), Positives = 27/49 (55%)

Query:    11 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVL 59
             LR YQ  +    +  G   SGV+VLPCGAGK+LVG  A        L+L
Sbjct:   175 LRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLIL 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       67        67   0.00091  102 3  11 22  0.38    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  25
  No. of states in DFA:  414 (44 KB)
  Total size of DFA:  73 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.37u 0.08s 7.45t   Elapsed:  00:00:02
  Total cpu time:  7.37u 0.08s 7.45t   Elapsed:  00:00:02
  Start:  Thu Aug 15 16:13:11 2013   End:  Thu Aug 15 16:13:13 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with hay hay hay haywire	protein from Drosophila melanogaster	2.7e-27
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 Excision repair cross-complementing rodent repair deficiency, complementation group 3 (Xeroderma pigmentosum group B complementing), isoform CRA_b	protein from Homo sapiens	4.6e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 Uncharacterized protein	protein from Canis lupus familiaris	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Bos taurus	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Homo sapiens	5.5e-24
BLAST match view associations BLAST with LOC100517918 LOC100517918 LOC100517918 Uncharacterized protein	protein from Sus scrofa	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Pongo abelii	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Macaca fascicularis	5.5e-24
BLAST match view associations BLAST with Ercc3 Ercc3 Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3	gene from Rattus norvegicus	5.5e-24
BLAST match view associations BLAST with Ercc3 Ercc3 Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3	protein from Mus musculus	5.5e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Gallus gallus	5.6e-24
BLAST match view associations BLAST with ERCC3 ERCC3 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit	protein from Gallus gallus	5.6e-24
BLAST match view associations BLAST with ercc3 ercc3 ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3	gene_product from Danio rerio	1.3e-23
BLAST match view associations BLAST with orf19.2857 orf19.2857 orf19.2857	gene_product from Candida albicans	1.9e-21
BLAST match view associations BLAST with repB repB repB transcription factor IIH subunit	gene from Dictyostelium discoideum	3.6e-21
BLAST match view associations BLAST with SSL2 SSL2 SSL2 Component of RNA polymerase transcription factor TFIIH holoenzyme	gene from Saccharomyces cerevisiae	3.9e-21
BLAST match view associations BLAST with Y66D12A.15 Y66D12A.15 Y66D12A.15	gene from Caenorhabditis elegans	5.7e-21
BLAST match view associations BLAST with XPB2 XPB2 XPB2 homolog of Xeroderma pigmentosum complementation group B 2	protein from Arabidopsis thaliana	1.4e-16
BLAST match view associations BLAST with XPB1 XPB1 XPB1 homolog of xeroderma pigmentosum complementation group B 1	protein from Arabidopsis thaliana	1.4e-16
BLAST match view associations BLAST with PF10_0369 PF10_0369 PF10_0369 helicase, putative	gene from Plasmodium falciparum	6.2e-14
BLAST match view associations BLAST with PF10_0369 PF10_0369 PF10_0369 DNA repair helicase rad25, putative	protein from Plasmodium falciparum 3D7	6.2e-14
BLAST match view associations BLAST with ercc3 ercc3 ercc3 DNA helicase Ercc3	protein from Mycobacterium tuberculosis	0.00061