RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11637
         (67 letters)



>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 206

 Score = 45.6 bits (107), Expect = 3e-08
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2   TIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCN 61
           T        LR YQEK+L +   + R   G IVLP G+GK+ V + A   +    L++  
Sbjct: 62  TPYFDAEISLRDYQEKALERWLVDKR---GCIVLPTGSGKTHVAMAAINELSTPTLIVVP 118

Query: 62  S 62
           +
Sbjct: 119 T 119


>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
          PF2015 {Pyrococcus furiosus [TaxId: 2261]}
          Length = 200

 Score = 36.3 bits (82), Expect = 6e-05
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 11 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACC 50
           R YQE    K        + +IVLP G GK+L+ +    
Sbjct: 10 PRIYQEVIYAKCKE----TNCLIVLPTGLGKTLIAMMIAE 45


>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia
          coli [TaxId: 562]}
          Length = 206

 Score = 32.7 bits (73), Expect = 0.001
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 11 LRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
           RP QE+ +  +      R  ++V+P G GKSL        +    +V+ 
Sbjct: 26 FRPGQEEIIDTVLSG---RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72


>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 298

 Score = 31.6 bits (70), Expect = 0.003
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 1   MTIDLKPSAVLRPYQEKSLRKMFGNGRARS------GVIVLPCGAGKSLVGVTACCTVRK 54
           + +D   S VLRP+Q + ++ ++     R        ++    G GK+L  +T   T+ K
Sbjct: 46  VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLK 105

Query: 55  R 55
           +
Sbjct: 106 Q 106


>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 230

 Score = 30.0 bits (66), Expect = 0.013
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 8  SAVLRPYQEKSLRKMFGNGRARSGVIV-LPCGAGKSLVGVTACC 50
           A LRPYQ K    M    +   G+ +    G GK+L  +    
Sbjct: 10 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS 53


>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
          gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 237

 Score = 27.2 bits (59), Expect = 0.11
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 12 RPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA---CCTVRKRALVLCN 61
          R  Q+   +++    R  S     P G GK+  G+          KR  V+  
Sbjct: 45 RAIQKMWAKRIL---RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP 94


>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
          hepatitis C virus (HCV), different isolates [TaxId:
          11103]}
          Length = 136

 Score = 26.7 bits (58), Expect = 0.14
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 29 RSGVIVLPCGAGKSLVGVTACCTVRKRALVLC 60
          +   +  P G+GKS     A      + LVL 
Sbjct: 9  QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN 40


>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
          virus [TaxId: 11089]}
          Length = 140

 Score = 24.3 bits (51), Expect = 1.3
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 29 RSGVIVLPCGAGKSLVGVTACC 50
           + V+    GAGK+   +    
Sbjct: 8  MTTVLDFHPGAGKTRRFLPQIL 29


>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
          type 2 [TaxId: 11060]}
          Length = 305

 Score = 24.1 bits (51), Expect = 1.7
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 29 RSGVIVLPCGAGKSLVGVTACC----TVRKRALVLC 60
          R  ++ L  GAGK+   + A          R L+L 
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILA 45


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
          {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 23.7 bits (51), Expect = 1.9
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 7  PSAVLRPYQEKSLRKMFGNGR 27
          P+  L  Y+E+ L+ + GNG 
Sbjct: 6  PAP-LVEYREEELKSLRGNGT 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 243,359
Number of extensions: 8803
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)