BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11640
(552 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242005969|ref|XP_002423832.1| DNA excision repair protein haywire, putative [Pediculus humanus
corporis]
gi|212507048|gb|EEB11094.1| DNA excision repair protein haywire, putative [Pediculus humanus
corporis]
Length = 794
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 289/339 (85%), Positives = 312/339 (92%), Gaps = 2/339 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQ R
Sbjct: 455 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQNR 514
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL+C+TSK+LLLYVMNPNK+RA QYLI YHERRGDKTI
Sbjct: 515 GFIARVQCAEVWCPMTPEFYREYLICRTSKKLLLYVMNPNKFRACQYLIRYHERRGDKTI 574
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ ERIQILQNFK+NPK+NTIFVSKVADTSFDLP+
Sbjct: 575 VFSDNVFALKHYAIKMNKPFIYGPTSQMERIQILQNFKINPKINTIFVSKVADTSFDLPD 634
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A+VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EMSYSRKRQ F
Sbjct: 635 ASVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTIEMSYSRKRQSF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYSYKVIT+LAGMEEE M Y TRDEQGQLLQQVLAA++TDA+EER+ GE G
Sbjct: 695 LVNQGYSYKVITQLAGMEEEPDMFYKTRDEQGQLLQQVLAANDTDAEEERIPGEGGKPGV 754
Query: 515 GFKRSGGTMASLSGADDAVYHESR--FSNVKHPLFKKFR 551
R G ++SLSGADDAVY E + S+VKHPLFKKFR
Sbjct: 755 MAHRRIGNISSLSGADDAVYVEYKKPSSSVKHPLFKKFR 793
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/106 (84%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDS+ICRFTSEAKDKPMGC
Sbjct: 359 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSIICRFTSEAKDKPMGC 418
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA +TM+WLQ+QEWGIM+LD+ + AK
Sbjct: 419 GILITTYSMITHTQKRSWEAAETMKWLQDQEWGIMVLDEVHTIPAK 464
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 80/100 (80%), Gaps = 1/100 (1%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+GVP AA K+VEKD A EDEFGAKDYR+QMVLK D+K RPLWVAPNGHIFLESFSPVY
Sbjct: 39 EGVPEAATKDVEKDTKA-DEDEFGAKDYRSQMVLKTDNKWRPLWVAPNGHIFLESFSPVY 97
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+
Sbjct: 98 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQT 137
>gi|307201000|gb|EFN80971.1| TFIIH basal transcription factor complex helicase XPB subunit
[Harpegnathos saltator]
Length = 737
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/342 (83%), Positives = 308/342 (90%), Gaps = 8/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 398 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 457
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CK SK+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 458 GFIARVQCAEVWCPMTPEFYREYLACKMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 517
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 518 VFSDNVFALKHYAIKMNKPYIYGPTSQNERIQILQNFKFNMKVNTIFVSKVADTSFDLPE 577
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 578 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAVAEEYNAFFYTLVSQDTMEMNYSRKRQRF 637
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGM+EE + Y+ R+EQGQLLQQVL AS+TDADEE++ GE
Sbjct: 638 LVNQGYAYKVITKLAGMDEEPDLMYANREEQGQLLQQVLTASDTDADEEKIPGE---GPR 694
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFR 551
R GTMAS+SGADDA+Y+E S + KHPLFKKFR
Sbjct: 695 PIVRKTGTMASMSGADDAIYYEYKKAPSSSTANKHPLFKKFR 736
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 302 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 361
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 362 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 407
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 78/101 (77%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AAK ++EK D EDEFGAKDYR QM+LKPD SRPLWVAPNGHIFLESFSPVY
Sbjct: 36 DGVPDAAKNDIEKQDETAIEDEFGAKDYRLQMILKPDCASRPLWVAPNGHIFLESFSPVY 95
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPE+IHE ++ V +Q+
Sbjct: 96 KHAHDFLIAISEPVCRPEYIHEYKLTAYSLYAAVSVGLQTE 136
>gi|332022982|gb|EGI63247.1| DNA excision repair protein haywire [Acromyrmex echinatior]
Length = 793
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/343 (84%), Positives = 307/343 (89%), Gaps = 10/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 454 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 513
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+ EFY+EYLVCK S++LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 514 GFIARVQCAEVWCPMTSEFYKEYLVCKMSRKLLLYVMNPNKFRCCQYLIQYHERRGDKTI 573
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 574 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNMKVNTIFVSKVADTSFDLPE 633
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 634 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRF 693
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGM+EE + Y RDEQGQLLQQVL AS+TDADEER+ GE S
Sbjct: 694 LVNQGYAYKVITKLAGMDEEPDLMYGNRDEQGQLLQQVLTASDTDADEERIPGE---GSK 750
Query: 515 GFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFKKFR 551
R GTM S+SGADD VY+E S +N KHPLFKKFR
Sbjct: 751 PIIRKAGTMMSISGADDTVYYEYKKAPGSSTAN-KHPLFKKFR 792
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/106 (85%), Positives = 99/106 (93%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSE KDKPMGC
Sbjct: 358 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEVKDKPMGC 417
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 418 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 463
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 78/101 (77%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DG+P AAK +VEK D EDEFGAKDYR+QM+LK D SRPLWVAPNGHIFLESFSPVY
Sbjct: 36 DGIPDAAKNDVEKQDECAIEDEFGAKDYRSQMILKSDCSSRPLWVAPNGHIFLESFSPVY 95
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+
Sbjct: 96 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTQ 136
>gi|383849852|ref|XP_003700549.1| PREDICTED: DNA excision repair protein haywire-like [Megachile
rotundata]
Length = 788
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/338 (84%), Positives = 306/338 (90%), Gaps = 4/338 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 455 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 514
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CK SK+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 515 GFIARVQCAEVWCPMTPEFYREYLGCKMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 574
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 575 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPE 634
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 635 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGM+EE + Y++R+EQG LLQQVL+AS+ DADEER+ GE
Sbjct: 695 LVNQGYAYKVITKLAGMDEEPDLMYTSREEQGHLLQQVLSASDMDADEERIPGE---GPR 751
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFRG 552
R G M S+SGADDAVY E + +N KHPLFKKFR
Sbjct: 752 PIIRKAGNMTSMSGADDAVYSEYKKAN-KHPLFKKFRA 788
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/106 (85%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 359 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 418
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
IL+TTYSMI+HTQKRSWEA+QTM+WLQ+QEWGIM+LD+ + AK
Sbjct: 419 EILITTYSMITHTQKRSWEAEQTMRWLQDQEWGIMVLDEVHTIPAK 464
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 82/106 (77%), Gaps = 3/106 (2%)
Query: 134 LDD---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLES 190
LDD GVP AAK +VEK D EDEFGAKDYR+QM+LKPD SRPLWVAPNGHIFLES
Sbjct: 32 LDDNEAGVPDAAKNDVEKQDETALEDEFGAKDYRSQMILKPDCASRPLWVAPNGHIFLES 91
Query: 191 FSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
FSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 92 FSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 137
>gi|380015693|ref|XP_003691832.1| PREDICTED: DNA excision repair protein haywire-like isoform 1 [Apis
florea]
Length = 795
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/343 (83%), Positives = 306/343 (89%), Gaps = 8/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CK SK+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 516 GFIARVQCAEVWCPMTPEFYREYLGCKMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGMEEE + Y++R+EQG LLQQVL+AS+ DADEER+ GE
Sbjct: 696 LVNQGYAYKVITKLAGMEEEPDLMYTSREEQGHLLQQVLSASDMDADEERIPGE---GPR 752
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFRG 552
R G M S+SGADDAVY+E S + KHPLFKKFR
Sbjct: 753 PIVRKAGNMTSMSGADDAVYYEYKKAPSSSTANKHPLFKKFRA 795
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 81/107 (75%), Gaps = 4/107 (3%)
Query: 134 LDD----GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLE 189
LDD G+P AAK +VEK D EDEFGAKDYR+QM+LKPD RPLWVAPNGHIFLE
Sbjct: 32 LDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCALRPLWVAPNGHIFLE 91
Query: 190 SFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
SFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 92 SFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 138
>gi|66519335|ref|XP_624125.1| PREDICTED: DNA excision repair protein haywire [Apis mellifera]
Length = 795
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/343 (83%), Positives = 306/343 (89%), Gaps = 8/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CK SK+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 516 GFIARVQCAEVWCPMTPEFYREYLGCKMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGMEEE + Y++R+EQG LLQQVL+AS+ DADEER+ GE
Sbjct: 696 LVNQGYAYKVITKLAGMEEEPDLMYTSREEQGHLLQQVLSASDMDADEERIPGE---GPR 752
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFRG 552
R G M S+SGADDAVY+E S + KHPLFKKFR
Sbjct: 753 PIVRKAGNMTSMSGADDAVYYEYKKAPSSSTANKHPLFKKFRA 795
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 81/107 (75%), Gaps = 4/107 (3%)
Query: 134 LDD----GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLE 189
LDD G+P AAK +VEK D EDEFGAKDYR+QM+LKPD RPLWVAPNGHIFLE
Sbjct: 32 LDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCALRPLWVAPNGHIFLE 91
Query: 190 SFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
SFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 92 SFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 138
>gi|380015695|ref|XP_003691833.1| PREDICTED: DNA excision repair protein haywire-like isoform 2 [Apis
florea]
Length = 800
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/343 (83%), Positives = 306/343 (89%), Gaps = 8/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 461 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 520
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CK SK+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 521 GFIARVQCAEVWCPMTPEFYREYLGCKMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 580
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 581 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPE 640
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 641 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRF 700
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGMEEE + Y++R+EQG LLQQVL+AS+ DADEER+ GE
Sbjct: 701 LVNQGYAYKVITKLAGMEEEPDLMYTSREEQGHLLQQVLSASDMDADEERIPGE---GPR 757
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFRG 552
R G M S+SGADDAVY+E S + KHPLFKKFR
Sbjct: 758 PIVRKAGNMTSMSGADDAVYYEYKKAPSSSTANKHPLFKKFRA 800
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 365 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 424
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 425 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 470
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 81/107 (75%), Gaps = 4/107 (3%)
Query: 134 LDD----GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLE 189
LDD G+P AAK +VEK D EDEFGAKDYR+QM+LKPD RPLWVAPNGHIFLE
Sbjct: 37 LDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCALRPLWVAPNGHIFLE 96
Query: 190 SFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
SFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 97 SFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 143
>gi|312383928|gb|EFR28807.1| hypothetical protein AND_02780 [Anopheles darlingi]
Length = 834
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 282/339 (83%), Positives = 312/339 (92%), Gaps = 3/339 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 496 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 555
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYL+ KTSK++LLYVMNP K+RA QYLI YHE+RGDKTI
Sbjct: 556 GYIARVQCAEVWCPMAPEFYREYLLAKTSKKMLLYVMNPAKFRACQYLIRYHEKRGDKTI 615
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ+ERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 616 VFSDNVFALKHYAIKMNKPYIYGPTSQNERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 675
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EM YSRKRQRF
Sbjct: 676 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRF 735
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-- 512
L+NQGYSYKVIT LAGME + + Y TR+EQGQLLQQV++AS+ D ++ER+ GE GV
Sbjct: 736 LVNQGYSYKVITHLAGMESDTDLFYKTREEQGQLLQQVMSASDMDCEDERMPGEGLGVPR 795
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
GG KR+GG ++S++GADDA+Y+E R + +HPLFKKFR
Sbjct: 796 PGGSKRTGG-LSSMAGADDAIYYERRKTGHQHPLFKKFR 833
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 400 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 459
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 460 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 505
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 81/101 (80%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
D VP AA KN EK+D A+ EDE+GAKDYR+QM LKPD+ SRPLWVAPNGHIFLESFSPVY
Sbjct: 74 DFVPDAATKNAEKNDDAIQEDEYGAKDYRSQMELKPDNTSRPLWVAPNGHIFLESFSPVY 133
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 134 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 174
>gi|91078404|ref|XP_974506.1| PREDICTED: similar to rad25/xp-b DNA repair helicase [Tribolium
castaneum]
gi|270003880|gb|EFA00328.1| hypothetical protein TcasGA2_TC003167 [Tribolium castaneum]
Length = 778
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/341 (85%), Positives = 308/341 (90%), Gaps = 4/341 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 437 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 496
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CKTSKRLLLYVMNPNK+RATQYLI YHERRGDKTI
Sbjct: 497 GFIARVQCAEVWCPMTPEFYREYLGCKTSKRLLLYVMNPNKFRATQYLIRYHERRGDKTI 556
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ ERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 557 VFSDNVFALKHYAIKMNKPYIYGPTSQGERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 616
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 617 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRF 676
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA-GEVGGVS 513
L+NQGYSYKVITKLAGM+EE + Y TR+EQGQLLQQVLAAS+ D ++E+V G
Sbjct: 677 LVNQGYSYKVITKLAGMDEEPDLMYKTREEQGQLLQQVLAASDIDCEDEKVPGEGGRGAG 736
Query: 514 GGFKRSGGTMASLSGADDAVYHESRFSNV---KHPLFKKFR 551
G R G M S+SGADDAVY+E + + KHPLFKKFR
Sbjct: 737 GSGNRRTGQMGSMSGADDAVYYEYKKNAANQHKHPLFKKFR 777
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/106 (85%), Positives = 99/106 (93%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 341 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 400
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
ILVTTYSMI+HTQ+RSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 401 SILVTTYSMITHTQRRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAK 446
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 81/100 (81%)
Query: 137 GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYR 196
VP AA ++ EK+D +V EDEFGAKDYR+QM+LKPD+ SRPLWVAPNGHIFLESFSPVY+
Sbjct: 39 AVPGAAARDAEKNDQSVQEDEFGAKDYRSQMILKPDNTSRPLWVAPNGHIFLESFSPVYK 98
Query: 197 HAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
HAHDFLIAI+EPVCRPEHIHE ++ V +Q++
Sbjct: 99 HAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTN 138
>gi|340720531|ref|XP_003398689.1| PREDICTED: DNA excision repair protein haywire-like [Bombus
terrestris]
Length = 795
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/342 (83%), Positives = 305/342 (89%), Gaps = 8/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFYREYL CK +K+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 516 GFIARVQCAEVWCPMSPEFYREYLGCKMTKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS DTMEM+YSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSLDTMEMNYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGMEEE + Y++R+EQG LLQQVL+AS+ DADEER+ GE
Sbjct: 696 LVNQGYAYKVITKLAGMEEEPDLMYTSREEQGHLLQQVLSASDIDADEERIPGE---GPR 752
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFR 551
R G M S+SGADDAVY+E S + KHPLFKKFR
Sbjct: 753 PIVRKAGNMTSMSGADDAVYYEYKKAPSSSTANKHPLFKKFR 794
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 80/107 (74%), Gaps = 4/107 (3%)
Query: 134 LDD----GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLE 189
LDD G+P AAK +VEK D EDEFGAKDYR+QM+LK D RPLWVAPNGHIFLE
Sbjct: 32 LDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKSDCTLRPLWVAPNGHIFLE 91
Query: 190 SFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
SFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 92 SFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 138
>gi|350412749|ref|XP_003489748.1| PREDICTED: DNA excision repair protein haywire-like isoform 1
[Bombus impatiens]
Length = 795
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/342 (83%), Positives = 305/342 (89%), Gaps = 8/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFYREYL CK +K+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 516 GFIARVQCAEVWCPMSPEFYREYLGCKMTKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS DTMEM+YSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSLDTMEMNYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGMEEE + Y++R+EQG LLQQVL+AS+ DADEER+ GE
Sbjct: 696 LVNQGYAYKVITKLAGMEEEPDLMYTSREEQGHLLQQVLSASDIDADEERIPGE---GPR 752
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFR 551
R G M S+SGADDAVY+E S + KHPLFKKFR
Sbjct: 753 PIVRKAGNMTSMSGADDAVYYEYKKAPSSSTANKHPLFKKFR 794
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 81/107 (75%), Gaps = 4/107 (3%)
Query: 134 LDD----GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLE 189
LDD G+P AAK +VEK D EDEFGAKDYR+QM+LKPD RPLWVAPNGHIFLE
Sbjct: 32 LDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCTLRPLWVAPNGHIFLE 91
Query: 190 SFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
SFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 92 SFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 138
>gi|350412751|ref|XP_003489749.1| PREDICTED: DNA excision repair protein haywire-like isoform 2
[Bombus impatiens]
Length = 804
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/342 (83%), Positives = 305/342 (89%), Gaps = 8/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 465 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 524
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFYREYL CK +K+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 525 GFIARVQCAEVWCPMSPEFYREYLGCKMTKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 584
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 585 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPE 644
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS DTMEM+YSRKRQRF
Sbjct: 645 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSLDTMEMNYSRKRQRF 704
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGMEEE + Y++R+EQG LLQQVL+AS+ DADEER+ GE
Sbjct: 705 LVNQGYAYKVITKLAGMEEEPDLMYTSREEQGHLLQQVLSASDIDADEERIPGE---GPR 761
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFR 551
R G M S+SGADDAVY+E S + KHPLFKKFR
Sbjct: 762 PIVRKAGNMTSMSGADDAVYYEYKKAPSSSTANKHPLFKKFR 803
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 369 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 428
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 429 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 474
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 81/107 (75%), Gaps = 4/107 (3%)
Query: 134 LDD----GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLE 189
LDD G+P AAK +VEK D EDEFGAKDYR+QM+LKPD RPLWVAPNGHIFLE
Sbjct: 41 LDDNETEGIPDAAKNDVEKQDDTALEDEFGAKDYRSQMILKPDCTLRPLWVAPNGHIFLE 100
Query: 190 SFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
SFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 101 SFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 147
>gi|307169923|gb|EFN62432.1| DNA excision repair protein haywire [Camponotus floridanus]
Length = 805
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/342 (84%), Positives = 303/342 (88%), Gaps = 8/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 466 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 525
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CK SK+LLLYVMNPNK+R QYLI YHERRGDKTI
Sbjct: 526 GFIARVQCAEVWCPMTPEFYREYLGCKMSKKLLLYVMNPNKFRCCQYLIRYHERRGDKTI 585
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYAVKMNKPYIYGPT QSERI ILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 586 VFSDNVFALKHYAVKMNKPYIYGPTIQSERIHILQNFKFNTKVNTIFVSKVADTSFDLPE 645
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSRKRQRF
Sbjct: 646 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRF 705
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGM+EE + Y R+EQGQLLQQVL AS+TDADEER+ E
Sbjct: 706 LVNQGYAYKVITKLAGMDEEPDLMYGNREEQGQLLQQVLTASDTDADEERIPNE---GPR 762
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVKHPLFKKFR 551
R GTM S+SGADDAVY+E S + KHPLFKKFR
Sbjct: 763 PIVRKAGTMTSMSGADDAVYYEYKKAPSSSTANKHPLFKKFR 804
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/106 (83%), Positives = 98/106 (92%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDK MGC
Sbjct: 370 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKFMGC 429
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSW+A+ TM+WLQ QEWGIM+LD+ + AK
Sbjct: 430 GILITTYSMITHTQKRSWDAENTMRWLQEQEWGIMVLDEVHTIPAK 475
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 78/101 (77%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AAK +VEK D EDEFGAKDYR QM+LKPD+ SRPLWVAPNGHIFLESFSPVY
Sbjct: 45 DGVPDAAKTDVEKQDECATEDEFGAKDYRLQMILKPDNTSRPLWVAPNGHIFLESFSPVY 104
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPE IHE ++ V +Q+
Sbjct: 105 KHAHDFLIAISEPVCRPEFIHEYKLTAYSLYAAVSVGLQTE 145
>gi|158300446|ref|XP_320364.4| AGAP012169-PA [Anopheles gambiae str. PEST]
gi|157013163|gb|EAA00171.4| AGAP012169-PA [Anopheles gambiae str. PEST]
Length = 812
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 281/339 (82%), Positives = 312/339 (92%), Gaps = 3/339 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 474 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 533
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYL+ KTSK++LLYVMNP K+RA QYLI YHE+RGDKTI
Sbjct: 534 GYIARVQCAEVWCPMAPEFYREYLIAKTSKKMLLYVMNPAKFRACQYLIRYHEKRGDKTI 593
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ+ERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 594 VFSDNVFALKHYAIKMNKPYIYGPTSQNERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 653
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EM YSRKRQRF
Sbjct: 654 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRF 713
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-- 512
L+NQGYSYKVIT LAGME + + Y TR+EQGQLLQQVL+A++ D ++ER+ G+ GV
Sbjct: 714 LVNQGYSYKVITHLAGMESDPDLFYKTREEQGQLLQQVLSATDMDCEDERMPGDGTGVPR 773
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
GG KR+GG ++S++GADDA+Y+E + S +HPLFKKFR
Sbjct: 774 PGGSKRTGG-LSSMAGADDAIYYERKKSAHQHPLFKKFR 811
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 378 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 437
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 438 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 483
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 82/101 (81%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
D VP AA KN EK+D A+ EDE+GAKDYR+QM LKPD++SRPLWVAPNGHIFLESFSPVY
Sbjct: 54 DFVPDAATKNAEKNDDAIQEDEYGAKDYRSQMELKPDNESRPLWVAPNGHIFLESFSPVY 113
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 114 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 154
>gi|170041186|ref|XP_001848354.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
gi|167864719|gb|EDS28102.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
Length = 810
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/340 (84%), Positives = 309/340 (90%), Gaps = 3/340 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 472 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 531
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYLV KTSK++LLYVMNP K+RA QYLI YHE+RGDKTI
Sbjct: 532 GYIARVQCAEVWCPMAPEFYREYLVTKTSKKMLLYVMNPQKFRACQYLIRYHEKRGDKTI 591
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ+ERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 592 VFSDNVFALKHYAIKMNKPYIYGPTSQNERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 651
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EM YSRKRQRF
Sbjct: 652 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRF 711
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-S 513
L+NQGYSYKVIT LAGME + + Y TR+EQGQLLQQVL+AS+ D ++ER+ GE G
Sbjct: 712 LVNQGYSYKVITHLAGMESDPDLFYKTREEQGQLLQQVLSASDMDCEDERIPGEGGAPRP 771
Query: 514 GGFKRSGGTMASLSGADDAVYHESRFSNVK-HPLFKKFRG 552
GG KR+GG ++S+SGADDAVY E R HPLFKKFRG
Sbjct: 772 GGSKRTGG-LSSMSGADDAVYMEFRKKKEHLHPLFKKFRG 810
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 376 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 435
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 436 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 481
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 79/99 (79%)
Query: 138 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 197
VP AA KN EK+D + EDE+GAKDYR+QM LKPD+ SRPLWVAPNGHIFLESFSPVY+H
Sbjct: 61 VPGAASKNAEKNDDGIGEDEYGAKDYRSQMQLKPDNASRPLWVAPNGHIFLESFSPVYKH 120
Query: 198 AHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
AHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 121 AHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 159
>gi|157135000|ref|XP_001663396.1| rad25/xp-b DNA repair helicase [Aedes aegypti]
gi|108870345|gb|EAT34570.1| AAEL013205-PA [Aedes aegypti]
Length = 810
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 285/341 (83%), Positives = 309/341 (90%), Gaps = 4/341 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 471 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 530
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYLV KTSK++LLYVMNP K+RA QYLI YHE+RGDKTI
Sbjct: 531 GYIARVQCAEVWCPMAPEFYREYLVAKTSKKMLLYVMNPAKFRACQYLIRYHEKRGDKTI 590
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 591 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 650
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EM YSRKRQRF
Sbjct: 651 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRF 710
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-- 512
L+NQGYSYKVIT LAGM+ + + Y TR+EQGQLLQQVL+A++ D ++ER+ GE G
Sbjct: 711 LVNQGYSYKVITHLAGMDSDPDLFYKTREEQGQLLQQVLSATDMDCEDERIPGEGTGAPR 770
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSNVK-HPLFKKFRG 552
GG KR+GG ++S+SGADDAVY E R HPLFKKFRG
Sbjct: 771 PGGSKRTGG-LSSMSGADDAVYLEFRKKKEHLHPLFKKFRG 810
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 375 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 434
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 435 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 480
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 78/99 (78%)
Query: 138 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 197
VP AA KN EK D + EDE+GAKDYR+QM LKPD+ SRPLWVAPNGHIFLESFSPVY+H
Sbjct: 59 VPEAASKNAEKIDEGIQEDEYGAKDYRSQMELKPDNASRPLWVAPNGHIFLESFSPVYKH 118
Query: 198 AHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
AHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 119 AHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 157
>gi|170064904|ref|XP_001867720.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
gi|167882123|gb|EDS45506.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
Length = 544
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/340 (84%), Positives = 309/340 (90%), Gaps = 3/340 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 206 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 265
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYLV KTSK++LLYVMNP K+RA QYLI YHE+RGDKTI
Sbjct: 266 GYIARVQCAEVWCPMAPEFYREYLVTKTSKKMLLYVMNPQKFRACQYLIRYHEKRGDKTI 325
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ+ERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 326 VFSDNVFALKHYAIKMNKPYIYGPTSQNERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 385
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EM YSRKRQRF
Sbjct: 386 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRF 445
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-S 513
L+NQGYSYKVIT LAGME + + Y TR+EQGQLLQQVL+AS+ D ++ER+ GE G
Sbjct: 446 LVNQGYSYKVITHLAGMESDPDLFYKTREEQGQLLQQVLSASDMDCEDERIPGEGGAPRP 505
Query: 514 GGFKRSGGTMASLSGADDAVYHESRFSNVK-HPLFKKFRG 552
GG KR+GG ++S+SGADDAVY E R HPLFKKFRG
Sbjct: 506 GGSKRTGG-LSSMSGADDAVYMEFRKKKEHLHPLFKKFRG 544
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 110 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 169
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 170 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 215
>gi|157134194|ref|XP_001663182.1| rad25/xp-b DNA repair helicase [Aedes aegypti]
gi|108870577|gb|EAT34802.1| AAEL012991-PA [Aedes aegypti]
Length = 810
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 285/341 (83%), Positives = 309/341 (90%), Gaps = 4/341 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 471 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 530
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYLV KTSK++LLYVMNP K+RA QYLI YHE+RGDKTI
Sbjct: 531 GYIARVQCAEVWCPMAPEFYREYLVAKTSKKMLLYVMNPAKFRACQYLIRYHEKRGDKTI 590
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQSERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 591 VFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 650
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EM YSRKRQRF
Sbjct: 651 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRF 710
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-- 512
L+NQGYSYKVIT LAGM+ + + Y TR+EQGQLLQQVL+A++ D ++ER+ GE G
Sbjct: 711 LVNQGYSYKVITHLAGMDSDPDLFYKTREEQGQLLQQVLSATDMDCEDERIPGEGTGAPR 770
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSNVK-HPLFKKFRG 552
GG KR+GG ++S+SGADDAVY E R HPLFKKFRG
Sbjct: 771 PGGSKRTGG-LSSMSGADDAVYLEFRKKKEHLHPLFKKFRG 810
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 375 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 434
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 435 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 480
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 78/99 (78%)
Query: 138 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 197
VP AA KN EK D + EDE+GAKDYR+QM LKPD+ SRPLWVAPNGHIFLESFSPVY+H
Sbjct: 59 VPEAASKNAEKIDEGIQEDEYGAKDYRSQMELKPDNASRPLWVAPNGHIFLESFSPVYKH 118
Query: 198 AHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
AHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 119 AHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 157
>gi|345481459|ref|XP_001601816.2| PREDICTED: DNA excision repair protein haywire-like isoform 1
[Nasonia vitripennis]
Length = 809
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/342 (83%), Positives = 305/342 (89%), Gaps = 8/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK
Sbjct: 470 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKN 529
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+PEFYREYL CK +++LLLYVMNPNK+RA Q+LI YHERRGDKTI
Sbjct: 530 GHIAKVQCAEVWCPMTPEFYREYLSCKMTRKLLLYVMNPNKFRACQFLIRYHERRGDKTI 589
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 590 VFSDNVFALKHYAIKMNKPYIYGPTSQGERIQILQNFKYNTKVNTIFVSKVADTSFDLPE 649
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSR+RQRF
Sbjct: 650 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRRRQRF 709
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGM++E M Y TR+EQGQLLQQVL+AS+ DADEER+ GE
Sbjct: 710 LVNQGYAYKVITKLAGMDDEPDMMYKTREEQGQLLQQVLSASDVDADEERIPGE---GPR 766
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNV-----KHPLFKKFR 551
R G MASLSGADDAVY+E + S KHPLFKKFR
Sbjct: 767 PMVRKAGNMASLSGADDAVYYEYKRSAASSTANKHPLFKKFR 808
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/106 (84%), Positives = 98/106 (92%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTAC TVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 374 AGKSLVGVTACSTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 433
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
IL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 434 KILITTYSMITHTQKRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAK 479
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 82/101 (81%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+G+P AAK +VEK D EDE+GAKDYR+QM+LKPD++SRPLWVAPNGHIFLESFSPVY
Sbjct: 47 EGIPDAAKNDVEKQDHGAIEDEYGAKDYRSQMILKPDNESRPLWVAPNGHIFLESFSPVY 106
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEH+HE ++ V +Q+H
Sbjct: 107 KHAHDFLIAISEPVCRPEHVHEYKLTAYSLYAAVSVGLQTH 147
>gi|345481457|ref|XP_003424374.1| PREDICTED: DNA excision repair protein haywire-like isoform 2
[Nasonia vitripennis]
Length = 802
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/342 (83%), Positives = 305/342 (89%), Gaps = 8/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK
Sbjct: 463 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKN 522
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+PEFYREYL CK +++LLLYVMNPNK+RA Q+LI YHERRGDKTI
Sbjct: 523 GHIAKVQCAEVWCPMTPEFYREYLSCKMTRKLLLYVMNPNKFRACQFLIRYHERRGDKTI 582
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKPYIYGPTSQ ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 583 VFSDNVFALKHYAIKMNKPYIYGPTSQGERIQILQNFKYNTKVNTIFVSKVADTSFDLPE 642
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM+YSR+RQRF
Sbjct: 643 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRRRQRF 702
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGM++E M Y TR+EQGQLLQQVL+AS+ DADEER+ GE
Sbjct: 703 LVNQGYAYKVITKLAGMDDEPDMMYKTREEQGQLLQQVLSASDVDADEERIPGE---GPR 759
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNV-----KHPLFKKFR 551
R G MASLSGADDAVY+E + S KHPLFKKFR
Sbjct: 760 PMVRKAGNMASLSGADDAVYYEYKRSAASSTANKHPLFKKFR 801
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/106 (84%), Positives = 98/106 (92%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTAC TVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 367 AGKSLVGVTACSTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 426
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
IL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 427 KILITTYSMITHTQKRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAK 472
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 82/101 (81%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+G+P AAK +VEK D EDE+GAKDYR+QM+LKPD++SRPLWVAPNGHIFLESFSPVY
Sbjct: 40 EGIPDAAKNDVEKQDHGAIEDEYGAKDYRSQMILKPDNESRPLWVAPNGHIFLESFSPVY 99
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEH+HE ++ V +Q+H
Sbjct: 100 KHAHDFLIAISEPVCRPEHVHEYKLTAYSLYAAVSVGLQTH 140
>gi|321473939|gb|EFX84905.1| hypothetical protein DAPPUDRAFT_300803 [Daphnia pulex]
Length = 794
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/342 (80%), Positives = 312/342 (91%), Gaps = 5/342 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 451 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIADLNFLIGPKLYEANWLELQKR 510
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFYREYL CK++K++LL+VMNPNK+RA Q+LI YHERR DK I
Sbjct: 511 GFIARVQCAEVWCPMSPEFYREYLACKSAKKMLLFVMNPNKFRACQFLIRYHERRNDKII 570
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALKHYA+ MNKP+IYGPTSQ+ER+QILQNFKLNPKVNTIFVSKVADTSFDLP+
Sbjct: 571 VFSDNVYALKHYALTMNKPFIYGPTSQNERLQILQNFKLNPKVNTIFVSKVADTSFDLPD 630
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT+EMS+SRKRQRF
Sbjct: 631 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTLEMSFSRKRQRF 690
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYSYKVIT++AGM++++ ++Y ++EQ LLQ VL AS+ DADEERV GE+GG G
Sbjct: 691 LVNQGYSYKVITRMAGMDQDQELNYKNKEEQANLLQMVLTASDIDADEERVPGEIGGRPG 750
Query: 515 GFKRSGGTMASLSGADDAVYHE----SRFSNV-KHPLFKKFR 551
F R GTMAS+SGADDAVY E S +N+ KHPLFKK+R
Sbjct: 751 PFGRRVGTMASMSGADDAVYMEYKRPSASNNLSKHPLFKKYR 792
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/106 (80%), Positives = 97/106 (91%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTS+AKDKP GC
Sbjct: 355 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKAQFKMWSTADDSMICRFTSDAKDKPHGC 414
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
IL+TT++MI+H QKRS+EADQTM+WLQ QEWGIM+LD+ + A+
Sbjct: 415 SILITTFNMITHQQKRSYEADQTMKWLQEQEWGIMVLDEVHTIPAR 460
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+GVP AAK +E + EDE+GAKDYR + LKPDHKSRPLWVAPNGHIFLESFSPVY
Sbjct: 48 EGVPEAAKHFIEVEGERQGEDEYGAKDYR-DLQLKPDHKSRPLWVAPNGHIFLESFSPVY 106
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 107 KHAHDFLIAISEPVCRPEHIHEYKLTSYSLYAAVSVGLQTH 147
>gi|194751011|ref|XP_001957820.1| GF10598 [Drosophila ananassae]
gi|190625102|gb|EDV40626.1| GF10598 [Drosophila ananassae]
Length = 803
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 280/343 (81%), Positives = 306/343 (89%), Gaps = 5/343 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 461 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 520
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 521 GFIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 580
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 581 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 640
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 641 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 700
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L+NQGYSYKVIT L GM+ + + Y T DEQ QLLQ VL+AS+ D ++E+V GE G G
Sbjct: 701 LVNQGYSYKVITHLKGMDTDSDLLYGTHDEQAQLLQLVLSASDLDCEDEKVPGEPGYRPG 760
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
SGG + G ++S+SG DDAVY+E R NV HPLFKKFRG
Sbjct: 761 GSGGTTKRTGGLSSMSGGDDAVYYEHRRKNVGSVHPLFKKFRG 803
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 365 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 424
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 425 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 470
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 78/101 (77%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AA KN E +D + DE+GAKDYRAQM L+ DH +RPLWVAPNGH+FLESFSPVY
Sbjct: 46 DGVPGAASKNAETNDEQINTDEYGAKDYRAQMQLRQDHGNRPLWVAPNGHVFLESFSPVY 105
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 106 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 146
>gi|195378160|ref|XP_002047852.1| GJ13670 [Drosophila virilis]
gi|194155010|gb|EDW70194.1| GJ13670 [Drosophila virilis]
Length = 809
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/344 (81%), Positives = 308/344 (89%), Gaps = 7/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 467 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 526
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 527 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEKRGDKTI 586
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 587 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNAKVNTIFVSKVADTSFDLPE 646
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 647 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 706
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---- 510
L+NQGYSYKVIT L GM+ E + Y T++EQGQLLQ VL+AS+ D ++E+V GE G
Sbjct: 707 LVNQGYSYKVITHLKGMDTETDLMYGTQEEQGQLLQLVLSASDLDCEDEKVPGEPGYRPS 766
Query: 511 GVSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
G G +R GG ++S+SG DDA+Y+E R NV HPLFKKFRG
Sbjct: 767 GAGGTTRRMGG-LSSMSGGDDAIYYEHRRKNVGSVHPLFKKFRG 809
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 371 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 430
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 431 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 476
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 79/101 (78%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AA KN E +D + DE+GAKDYR+QM L+PDH +RPLWVAPNGH+FLESFSPVY
Sbjct: 45 DGVPGAASKNAETNDENINTDEYGAKDYRSQMQLRPDHANRPLWVAPNGHVFLESFSPVY 104
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 105 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 145
>gi|195017332|ref|XP_001984577.1| GH14950 [Drosophila grimshawi]
gi|193898059|gb|EDV96925.1| GH14950 [Drosophila grimshawi]
Length = 806
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/343 (81%), Positives = 307/343 (89%), Gaps = 6/343 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 465 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 524
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 525 GFIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 584
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 585 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNAKVNTIFVSKVADTSFDLPE 644
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 645 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 704
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L+NQGYSYKVIT L GM+ E + Y T++EQGQLLQ VL+AS+ D ++E+V GE G
Sbjct: 705 LVNQGYSYKVITHLKGMDTESDLFYGTQEEQGQLLQLVLSASDLDCEDEKVPGEPGYRPN 764
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
G KR GG ++S+SG DDA+Y+E R N+ HPLFKKFRG
Sbjct: 765 GPGTTKRMGG-LSSMSGGDDAIYYEHRRKNIGSVHPLFKKFRG 806
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 369 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 428
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 429 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 474
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 79/101 (78%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AA KN E +D + DE+GAKDYR+QM L+PDH +RPLWVAPNGH+FLESFSPVY
Sbjct: 45 DGVPGAASKNAETNDENINTDEYGAKDYRSQMQLRPDHANRPLWVAPNGHVFLESFSPVY 104
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 105 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 145
>gi|195493190|ref|XP_002094310.1| GE21750 [Drosophila yakuba]
gi|194180411|gb|EDW94022.1| GE21750 [Drosophila yakuba]
Length = 802
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 278/343 (81%), Positives = 307/343 (89%), Gaps = 5/343 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 460 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 520 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 579
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 580 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 639
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 640 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 700 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGFRPS 759
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
SGG R G ++S+SG DDAVY+E R NV HPLFKKFRG
Sbjct: 760 GSGGTVRRVGGLSSMSGGDDAVYYEYRKKNVGSVHPLFKKFRG 802
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 364 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 423
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 424 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 469
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 87/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + DGVP AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESDGVPGAASKNAETNDDQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
DH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 QDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|195326581|ref|XP_002030004.1| GM25215 [Drosophila sechellia]
gi|194118947|gb|EDW40990.1| GM25215 [Drosophila sechellia]
Length = 802
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/343 (80%), Positives = 307/343 (89%), Gaps = 5/343 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 460 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 520 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 579
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 580 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 639
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 640 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 700 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 759
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
SGG R G ++S+SG DDA+Y+E R NV HPLFKKFRG
Sbjct: 760 GSGGTVRRVGGLSSMSGGDDAIYYEHRKKNVGSVHPLFKKFRG 802
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 364 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 423
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 424 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 469
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + DG+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESDGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|194868422|ref|XP_001972288.1| GG15440 [Drosophila erecta]
gi|190654071|gb|EDV51314.1| GG15440 [Drosophila erecta]
Length = 802
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 278/344 (80%), Positives = 308/344 (89%), Gaps = 7/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 460 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 520 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 579
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 580 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 639
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 640 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---- 510
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 700 LVNQGYSYKVITHLKGMDTDTDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGFRPS 759
Query: 511 GVSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
G G +R GG ++S+SG DDAVY+E R NV HPLFKKFRG
Sbjct: 760 GSGGNVRRVGG-LSSMSGGDDAVYYEYRKKNVGSVHPLFKKFRG 802
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 364 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 423
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 424 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 469
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 88/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + DGVP AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESDGVPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|11079|emb|CAA48386.1| ERCC3 [Drosophila melanogaster]
gi|260979|gb|AAA12421.1| xeroderma pigmentosum complementation-group B correcting gene
homolog [Drosophila melanogaster]
Length = 802
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/343 (80%), Positives = 307/343 (89%), Gaps = 5/343 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 460 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 520 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 579
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 580 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 639
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 640 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 700 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 759
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
SGG R G ++S+SG DDA+Y+E R N+ HPLFKKFRG
Sbjct: 760 GSGGIVRRVGGLSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRG 802
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 364 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 423
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 424 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 469
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 88/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|195589302|ref|XP_002084391.1| GD14248 [Drosophila simulans]
gi|194196400|gb|EDX09976.1| GD14248 [Drosophila simulans]
Length = 802
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/343 (80%), Positives = 307/343 (89%), Gaps = 5/343 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 460 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 520 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 579
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 580 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 639
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 640 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 700 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 759
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
SGG R G ++S+SG DDA+Y+E R NV HPLFKKFRG
Sbjct: 760 GSGGTVRRVGGLSSMSGGDDAIYYEHRKKNVGSVHPLFKKFRG 802
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 364 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 423
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 424 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 469
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 87/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
DH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 TDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|24662247|ref|NP_524020.2| haywire, isoform A [Drosophila melanogaster]
gi|221331068|ref|NP_001137931.1| haywire, isoform B [Drosophila melanogaster]
gi|68068031|sp|Q02870.2|ERCC3_DROME RecName: Full=DNA excision repair protein haywire; AltName:
Full=ATP-dependent DNA helicase hay; AltName:
Full=ERCC-3 homolog protein; AltName: Full=ERCC3Dm
gi|7294816|gb|AAF50150.1| haywire, isoform A [Drosophila melanogaster]
gi|94400453|gb|ABF17890.1| FI01118p [Drosophila melanogaster]
gi|220902549|gb|ACL83286.1| haywire, isoform B [Drosophila melanogaster]
Length = 798
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/344 (80%), Positives = 308/344 (89%), Gaps = 7/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 516 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---- 510
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 696 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 755
Query: 511 GVSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
G G +R GG ++S+SG DDA+Y+E R N+ HPLFKKFRG
Sbjct: 756 GSGGAVRRVGG-LSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRG 798
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 88/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|15292261|gb|AAK93399.1| LD44022p [Drosophila melanogaster]
Length = 798
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/344 (80%), Positives = 308/344 (89%), Gaps = 7/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 516 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---- 510
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 696 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 755
Query: 511 GVSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
G G +R GG ++S+SG DDA+Y+E R N+ HPLFKKFRG
Sbjct: 756 GSGGAVRRVGG-LSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRG 798
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 88/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|328697792|ref|XP_001950547.2| PREDICTED: DNA excision repair protein haywire-like [Acyrthosiphon
pisum]
Length = 750
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/338 (81%), Positives = 309/338 (91%), Gaps = 3/338 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLT+VQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQ+R
Sbjct: 414 LDEVHTIPAKMFRRVLTLVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQQR 473
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQC+EVWCPM+PEFYREYL +T K++L +VMNPNK+RA Q+LI YHE+RGDKTI
Sbjct: 474 GYIAKVQCSEVWCPMAPEFYREYLATRTCKKMLFFVMNPNKFRACQFLIRYHEQRGDKTI 533
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA+K++KPYIYGPTSQ+ERIQILQNFKLNPKVNTIFVSKVADTSFDLP+
Sbjct: 534 VFSDNVFALKEYALKLSKPYIYGPTSQAERIQILQNFKLNPKVNTIFVSKVADTSFDLPD 593
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKK AIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 594 ANVLIQISSHGGSRRQEAQRLGRILRAKKTAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 653
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGYSYKV+TKLAGM+E+ + YS+R++QG LL +VLAA++TDADEER+ E G S
Sbjct: 654 LIDQGYSYKVVTKLAGMDEDPELFYSSREDQGLLLSKVLAANDTDADEERMPYE--GTSK 711
Query: 515 GFKRSGGTMASLSGADDAVYHE-SRFSNVKHPLFKKFR 551
+K+ G M+S+SGADDAVY E R S VKHPLFKKFR
Sbjct: 712 SYKKMSGKMSSMSGADDAVYAEFRRNSGVKHPLFKKFR 749
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 97/106 (91%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNS VSVEQWK+QFK+WSTADDS++CRFTS+ KDK MGC
Sbjct: 318 AGKSLVGVTACCTVRKRALVLCNSAVSVEQWKYQFKMWSTADDSLVCRFTSDVKDKLMGC 377
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G+ +TTYSMI+HTQKRSWEA+QTM+W+Q QEWGIM+LD+ + AK
Sbjct: 378 GVFITTYSMITHTQKRSWEAEQTMKWIQEQEWGIMVLDEVHTIPAK 423
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
++G+P AAKKN E +V EDEFGAKDYR+QM LK DH SRPLWVAP+GHIFLES+SPV
Sbjct: 14 EEGLPSAAKKNAETAINSV-EDEFGAKDYRSQMNLKTDHASRPLWVAPDGHIFLESYSPV 72
Query: 195 YRHAHDFLIAIAEPVCRPEHIHE 217
YRHAHDF+IAIAEPVCRP H+HE
Sbjct: 73 YRHAHDFMIAIAEPVCRPTHLHE 95
>gi|195171461|ref|XP_002026524.1| GL15471 [Drosophila persimilis]
gi|198465827|ref|XP_001353779.2| GA20769 [Drosophila pseudoobscura pseudoobscura]
gi|194111430|gb|EDW33473.1| GL15471 [Drosophila persimilis]
gi|198150332|gb|EAL29513.2| GA20769 [Drosophila pseudoobscura pseudoobscura]
Length = 797
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 272/340 (80%), Positives = 304/340 (89%), Gaps = 2/340 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 458 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 517
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 518 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 577
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 578 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 637
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVL+QISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 638 ANVLVQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 697
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYSYKVIT L GM+ + + Y ++EQ QLLQ VL+AS+ D ++E++ GE G G
Sbjct: 698 LVNQGYSYKVITHLKGMDTDTNLMYGLQEEQAQLLQLVLSASDLDCEDEKLPGEPGYRPG 757
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
G + G ++S+SG DDA+Y+E R NV HPLFKKFRG
Sbjct: 758 GTTKRAGGLSSMSGGDDAIYYEHRRKNVGSVHPLFKKFRG 797
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 362 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 421
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 422 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 467
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 89/127 (70%)
Query: 110 TQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 169
++KR E + Q +++ + DG+P AA KN E +D V DE+GAKDYR QM L
Sbjct: 18 SKKRRAEDEAFTQLVEDNDSLDATESDGIPGAASKNAETNDEQVNTDEYGAKDYRGQMQL 77
Query: 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
+PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 78 RPDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAV 137
Query: 230 LTIVQSH 236
+Q+H
Sbjct: 138 SVGLQTH 144
>gi|195442635|ref|XP_002069058.1| GK12273 [Drosophila willistoni]
gi|194165143|gb|EDW80044.1| GK12273 [Drosophila willistoni]
Length = 804
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/342 (79%), Positives = 305/342 (89%), Gaps = 4/342 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 463 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 522
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFYREYL +TSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 523 GFIARVQCAEVWCPMSPEFYREYLTTRTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 582
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQI+QNFK N KV+TIFVSKVADTSFDLPE
Sbjct: 583 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQIIQNFKFNAKVSTIFVSKVADTSFDLPE 642
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 643 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 702
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG--GV 512
L+NQGYSYKVIT L G++ E + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 703 LVNQGYSYKVITHLKGIDTEPDLLYGTQEEQGQLLQLVLSASDMDCEDEKMPGEPGYRAG 762
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
GG + G ++S+SG DDAVY+E R N HPLFKKFRG
Sbjct: 763 GGGTTKRTGAISSMSGGDDAVYYEYRRKNTGSVHPLFKKFRG 804
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 367 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 426
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 427 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 472
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 78/101 (77%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+GVP AA KN E +D + DE+GAKDYR+QM L+ DH +RPLWVAPNGH+FLESFSPVY
Sbjct: 45 EGVPGAASKNAEANDDNIDTDEYGAKDYRSQMQLRQDHSNRPLWVAPNGHVFLESFSPVY 104
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 105 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 145
>gi|904101|gb|AAA74931.1| helicase [Drosophila melanogaster]
Length = 801
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/343 (78%), Positives = 301/343 (87%), Gaps = 6/343 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 460 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IAR QCAEVWCPMSPEFYREYL KTSK++LLYV NP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 520 GYIARCQCAEVWCPMSPEFYREYLTTKTSKKMLLYV-NPSKFRSCQFLIKYHEQRGDKTI 578
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 579 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 638
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRL RILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR RF
Sbjct: 639 ANVLIQISSHGGSRRQEAQRLVRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRHRF 698
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L+NQG YKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 699 LVNQGICYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 758
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
SGG R G ++S+SG DDA+Y+E R N+ HPLFKKFRG
Sbjct: 759 GSGGIVRRVGGLSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRG 801
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 364 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 423
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 424 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 469
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 88/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>gi|427792675|gb|JAA61789.1| Putative rna polymer, partial [Rhipicephalus pulchellus]
Length = 781
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 264/344 (76%), Positives = 298/344 (86%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANWLELQ
Sbjct: 437 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWLELQNN 496
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPM+PEFYREYL + K++LL+VMNPNK+RA Q+LI YHERR DK I
Sbjct: 497 GYIAKVQCAEVWCPMTPEFYREYLQARACKKMLLFVMNPNKFRACQFLIKYHERRSDKII 556
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMN+PYIYGPTSQ ER+QILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 557 VFSDNVFALKHYAIKMNRPYIYGPTSQQERMQILQNFKYNPKVNTIFVSKVADTSFDLPE 616
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQ+S+HGGSRRQEAQRLGRILRAKKGA+AEEYNAFFY+LVS+DTMEM YSRKRQRF
Sbjct: 617 ANVLIQVSAHGGSRRQEAQRLGRILRAKKGAVAEEYNAFFYSLVSEDTMEMHYSRKRQRF 676
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG--GV 512
L+NQGYSYKVITK+ GM+EE + Y T++EQ LLQQVLAA++ DA+EERVAGE G G
Sbjct: 677 LVNQGYSYKVITKMEGMDEEE-LAYRTKEEQTSLLQQVLAANDADAEEERVAGETGPTGH 735
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFS-----NVKHPLFKKFR 551
R G M+S+SGAD AVY E R ++HPLFK+FR
Sbjct: 736 RIQMSRRAGNMSSMSGADSAVYLEYRTDKKKDMGLRHPLFKRFR 779
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKR LVLCNSGVSVEQWK QFK+WSTADDS+ICRFTSEAKDKPMGC
Sbjct: 341 AGKSLVGVTACCTVRKRCLVLCNSGVSVEQWKAQFKMWSTADDSVICRFTSEAKDKPMGC 400
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GI +TTYSMI+HTQ+RSWEA+Q M WL+ QEWG+MLLD+ + AK
Sbjct: 401 GICITTYSMITHTQRRSWEAEQVMAWLKEQEWGLMLLDEVHTIPAK 446
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Query: 138 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 197
VP AA + + D +V EDEFGAKDYR+QM L+PDH SRPLWVA +GH+FLE+FSPVY+H
Sbjct: 38 VPAAASQKLTTD--SVVEDEFGAKDYRSQMELRPDHASRPLWVAADGHVFLEAFSPVYKH 95
Query: 198 AHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
AHDFLIAI+EPVCRP+HIHE ++ V +Q+
Sbjct: 96 AHDFLIAISEPVCRPQHIHEYKLTSYSLYAAVSVGLQTQ 134
>gi|241779174|ref|XP_002399857.1| rad25/xp-B DNA repair helicase, putative [Ixodes scapularis]
gi|215508536|gb|EEC17990.1| rad25/xp-B DNA repair helicase, putative [Ixodes scapularis]
Length = 782
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/343 (76%), Positives = 298/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANWLELQ
Sbjct: 439 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWLELQNH 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPM+PEFYREYL ++ K+LLL+VMNPNK+RA Q+L+ +HERR DK I
Sbjct: 499 GYIAKVQCAEVWCPMTPEFYREYLSARSCKKLLLFVMNPNKFRACQFLVKFHERRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMN+PYIYGPTSQ ER+QILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 559 VFSDNVFALKHYAIKMNRPYIYGPTSQQERMQILQNFKYNPKVNTIFVSKVADTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQ+S+HGGSRRQEAQRLGRILRAKK AIAEEYNAFFY+LVS+DTMEM YSRKRQRF
Sbjct: 619 ANVLIQVSAHGGSRRQEAQRLGRILRAKKSAIAEEYNAFFYSLVSEDTMEMHYSRKRQRF 678
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYSYKVITK+ GM+EE + Y T++EQ LLQQVLAA++ DA+EERVAGE
Sbjct: 679 LVNQGYSYKVITKMEGMDEE-DLAYRTKEEQTNLLQQVLAANDADAEEERVAGETSTAGQ 737
Query: 515 GFK--RSGGTMASLSGADDAVYHESRFS----NVKHPLFKKFR 551
F+ R G M+S+SGAD AVY E R ++HPLFK+FR
Sbjct: 738 RFQMSRRAGNMSSMSGADSAVYLEYRMGKKDLGLRHPLFKRFR 780
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKR LVLCNSGVSVEQWK QFK+WSTADDS+ICRFTSEAKDKPMGC
Sbjct: 343 AGKSLVGVTACCTVRKRCLVLCNSGVSVEQWKAQFKMWSTADDSVICRFTSEAKDKPMGC 402
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GI +TTYSMI+HTQ+RSWEA+Q M WL+ QEWG+MLLD+ + AK
Sbjct: 403 GICITTYSMITHTQRRSWEAEQVMSWLKEQEWGLMLLDEVHTIPAK 448
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 3/101 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AA + + + A EDEFGAKDYR+QM L+PDH SRPLWVA +GH+FLE+FSPVY
Sbjct: 35 DGVPAAASQKLSE---ASVEDEFGAKDYRSQMQLRPDHSSRPLWVAADGHVFLEAFSPVY 91
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRP HIHE ++ V +Q+
Sbjct: 92 KHAHDFLIAISEPVCRPHHIHEYKLTSYSLYAAVSVGLQTQ 132
>gi|72255519|ref|NP_001026814.1| TFIIH basal transcription factor complex helicase XPB subunit
[Rattus norvegicus]
gi|123781857|sp|Q4G005.1|ERCC3_RAT RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|71051759|gb|AAH98856.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Rattus norvegicus]
gi|149017136|gb|EDL76187.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Rattus norvegicus]
Length = 782
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSLSGADDTVYMEYHSSRNKASTKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|74185870|dbj|BAE32801.1| unnamed protein product [Mus musculus]
Length = 783
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 441 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 501 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 560
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 561 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 620
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 621 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 680
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 681 LVDQGYSFKVITKLAGMEEEE-LSFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 739
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 740 QASRRCGTMSSLSGADDTVYMEYHSSRSKASSKHVHPLFKRFR 782
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 345 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 404
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + A+
Sbjct: 405 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAR 450
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|19526800|ref|NP_598419.1| TFIIH basal transcription factor complex helicase XPB subunit [Mus
musculus]
gi|1351441|sp|P49135.1|ERCC3_MOUSE RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=Basic transcription factor 2 89
kDa subunit; Short=BTF2 p89; AltName: Full=DNA excision
repair protein ERCC-3; AltName: Full=DNA repair protein
complementing XP-B cells; AltName: Full=TFIIH 89 kDa
subunit; AltName: Full=Xeroderma pigmentosum group
B-complementing protein
gi|240583|gb|AAB20614.1| DNA repair gene [Mus sp.]
gi|16741581|gb|AAH16595.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mus musculus]
gi|20072984|gb|AAH26575.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mus musculus]
gi|148664642|gb|EDK97058.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, isoform CRA_b [Mus musculus]
Length = 783
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 441 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 501 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 560
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 561 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 620
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 621 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 680
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 681 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 739
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 740 QASRRCGTMSSLSGADDTVYMEYHSSRSKASSKHVHPLFKRFR 782
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 345 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 404
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + A+
Sbjct: 405 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAR 450
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|74227659|dbj|BAE35681.1| unnamed protein product [Mus musculus]
Length = 505
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 163 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 222
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 223 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 282
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 283 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 342
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 343 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 402
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 403 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 461
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 462 QASRRCGTMSSLSGADDTVYMEYHSSRSKASSKHVHPLFKRFR 504
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 67 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 126
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + A+
Sbjct: 127 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAR 172
>gi|350538541|ref|NP_001233723.1| TFIIH basal transcription factor complex helicase XPB subunit
[Cricetulus griseus]
gi|117572517|gb|ABK40495.1| DNA helicase [Cricetulus griseus]
Length = 782
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRNKASTKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKSDHASRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|148664641|gb|EDK97057.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, isoform CRA_a [Mus musculus]
Length = 593
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 251 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 310
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 311 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 370
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 371 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 430
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 431 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 490
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 491 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 549
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 550 QASRRCGTMSSLSGADDTVYMEYHSSRSKASSKHVHPLFKRFR 592
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 155 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 214
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + A+
Sbjct: 215 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAR 260
>gi|42415513|ref|NP_963876.1| TFIIH basal transcription factor complex helicase XPB subunit
[Danio rerio]
gi|82241436|sp|Q7ZVV1.1|ERCC3_DANRE RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|28277642|gb|AAH45400.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Danio rerio]
gi|182892000|gb|AAI65665.1| Ercc3 protein [Danio rerio]
Length = 782
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/346 (76%), Positives = 299/346 (86%), Gaps = 12/346 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 439 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 499 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 559 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 619 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 678
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M +STRDEQ QLLQ+VLAAS+ DA+EE V GEVGG
Sbjct: 679 LVDQGYSFKVITKLAGMEEEDLM-FSTRDEQQQLLQKVLAASDLDAEEEVVMGEVGG-KP 736
Query: 515 GFKRSGGTMASLSGADDAVYHESRF---------SNVKHPLFKKFR 551
F R GTM+S+SGADDA+Y E + N+ HPLFK+FR
Sbjct: 737 QFSRRAGTMSSMSGADDALYMEYQMPRGSKASVGKNI-HPLFKRFR 781
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 343 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 402
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+++LD+ + AK
Sbjct: 403 SVAISTYSMLGHTTKRSWEAERVMEWMKSQEWGLIILDEVHTIPAK 448
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 34 EAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPLWVAPDGHIFLEAFSPVY 91
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AI+EPVCRP H HE ++ V +Q+
Sbjct: 92 KYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQT 131
>gi|426220683|ref|XP_004004543.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Ovis aries]
Length = 782
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSSRSKTSTKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|114050909|ref|NP_001039453.1| TFIIH basal transcription factor complex helicase XPB subunit [Bos
taurus]
gi|122134582|sp|Q1RMT1.1|ERCC3_BOVIN RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|92097496|gb|AAI14730.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Bos taurus]
gi|296490749|tpg|DAA32862.1| TPA: TFIIH basal transcription factor complex helicase XPB subunit
[Bos taurus]
Length = 782
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSSRSKTSTKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|403280221|ref|XP_003931626.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 2 [Saimiri boliviensis boliviensis]
gi|403280223|ref|XP_003931627.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 3 [Saimiri boliviensis boliviensis]
Length = 718
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 295/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 376 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 435
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 436 GYIANVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 495
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 496 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 555
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFYTLVSQDT EM+YS KRQRF
Sbjct: 556 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYTLVSQDTQEMAYSTKRQRF 615
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 616 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 674
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 675 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 717
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 280 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 339
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 340 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 385
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 227 RRVLTIVQS 235
V +Q+
Sbjct: 61 AAVSVGLQT 69
>gi|395855908|ref|XP_003800388.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Otolemur garnettii]
Length = 782
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSLSGADDTVYMEYHSSRSKATAKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRVQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|348516497|ref|XP_003445775.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 1 [Oreochromis niloticus]
Length = 783
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/345 (75%), Positives = 298/345 (86%), Gaps = 10/345 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M +S+RDEQ QLLQ+VLAAS+ DA+EE VAGEV G
Sbjct: 680 LVDQGYSFKVITKLAGMEEEDLM-FSSRDEQQQLLQKVLAASDMDAEEEVVAGEV-GTRP 737
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK--------HPLFKKFR 551
F R GTM+S+SGADD +Y E + + K HPLFK+FR
Sbjct: 738 QFSRRTGTMSSMSGADDTIYMEYQSRSSKALAASKSVHPLFKRFR 782
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+++LD+ + A+
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHTIPAR 449
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ +P AA K V D+++ DE+GAKDYRAQM+LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 34 EAIPAAAGKQV--DESSTKLDEYGAKDYRAQMLLKNDHSSRPLWVAPDGHIFLEAFSPVY 91
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 92 KYAQDFLVAIAEPVCRPNHIHEYKLTAYSLYAAVSVGLQT 131
>gi|403280219|ref|XP_003931625.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 295/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIANVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFYTLVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYTLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|348586086|ref|XP_003478801.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Cavia porcellus]
Length = 781
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 439 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 499 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 559 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 619 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 678
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 679 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 737
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 738 QASRRFGTMSSMSGADDTVYMEYHSSRSKPSTKHVHPLFKRFR 780
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 343 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 402
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 403 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 448
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR+QM LK DH SRPLWV H+ L +FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRSQMPLKDDHSSRPLWVLLMPHL-LGAFSPVY 92
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 93 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 132
>gi|344290062|ref|XP_003416758.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Loxodonta africana]
Length = 782
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSSRNKASSKHVHPLFKRFR 781
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTV KR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVHKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|348516499|ref|XP_003445776.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 2 [Oreochromis niloticus]
Length = 784
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/345 (75%), Positives = 298/345 (86%), Gaps = 10/345 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 441 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 501 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 560
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 561 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 620
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 621 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 680
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M +S+RDEQ QLLQ+VLAAS+ DA+EE VAGEV G
Sbjct: 681 LVDQGYSFKVITKLAGMEEEDLM-FSSRDEQQQLLQKVLAASDMDAEEEVVAGEV-GTRP 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK--------HPLFKKFR 551
F R GTM+S+SGADD +Y E + + K HPLFK+FR
Sbjct: 739 QFSRRTGTMSSMSGADDTIYMEYQSRSSKALAASKSVHPLFKRFR 783
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 345 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGC 404
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+++LD+ + A+
Sbjct: 405 SVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHTIPAR 450
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ +P AA K V D+++ DE+GAKDYRAQM+LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 35 EAIPAAAGKQV--DESSTKLDEYGAKDYRAQMLLKNDHSSRPLWVAPDGHIFLEAFSPVY 92
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 93 KYAQDFLVAIAEPVCRPNHIHEYKLTAYSLYAAVSVGLQT 132
>gi|197101765|ref|NP_001125797.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pongo abelii]
gi|75070714|sp|Q5RA62.1|ERCC3_PONAB RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|55729225|emb|CAH91348.1| hypothetical protein [Pongo abelii]
Length = 782
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAE VCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|355566063|gb|EHH22492.1| hypothetical protein EGK_05771 [Macaca mulatta]
gi|355751659|gb|EHH55914.1| hypothetical protein EGM_05215 [Macaca fascicularis]
Length = 784
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 442 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 501
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 502 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 561
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 562 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 621
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 622 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 681
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 682 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 740
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 741 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 783
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 346 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 405
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 406 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 451
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|73984146|ref|XP_533314.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Canis lupus familiaris]
Length = 782
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGME+E + +STR+EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEDEE-LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E + K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSARSKASTKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHGSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|397516179|ref|XP_003828313.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 2 [Pan paniscus]
gi|397516181|ref|XP_003828314.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 3 [Pan paniscus]
Length = 718
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 376 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 435
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 436 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 495
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 496 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 555
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 556 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 615
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 616 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 674
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 675 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 717
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 280 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 339
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 340 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 385
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 227 RRVLTIVQS 235
V +Q+
Sbjct: 61 AAVSVGLQT 69
>gi|351703141|gb|EHB06060.1| TFIIH basal transcription factor complex helicase XPB subunit
[Heterocephalus glaber]
Length = 751
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 409 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 468
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 469 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 528
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 529 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 588
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 589 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 648
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 649 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 707
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 708 QASRRFGTMSSMSGADDTVYMEYHSSRSKASTKHVHPLFKRFR 750
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 313 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 372
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 373 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 418
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+A DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPTAAGKQV--DEAGTKVDEYGAKDYRVQMPLKDDHSSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGL 241
++A DFL+AIAEPVCRP H+HE ++ + T+ KL L
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAALCTVSYGKVKLVL 139
>gi|441663476|ref|XP_004091680.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPB subunit [Nomascus leucogenys]
Length = 737
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 395 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 454
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 455 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 514
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 515 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 574
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 575 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 634
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 635 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 693
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 694 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 736
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 299 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 358
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 359 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 404
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 45/49 (91%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE
Sbjct: 26 LKDDHNSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHE 74
>gi|397516177|ref|XP_003828312.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 1 [Pan paniscus]
gi|410208020|gb|JAA01229.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
gi|410306508|gb|JAA31854.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
gi|410342887|gb|JAA40390.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
Length = 782
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|4557563|ref|NP_000113.1| TFIIH basal transcription factor complex helicase XPB subunit [Homo
sapiens]
gi|119541|sp|P19447.1|ERCC3_HUMAN RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=Basic transcription factor 2 89
kDa subunit; Short=BTF2 p89; AltName: Full=DNA excision
repair protein ERCC-3; AltName: Full=DNA repair protein
complementing XP-B cells; AltName: Full=TFIIH basal
transcription factor complex 89 kDa subunit; Short=TFIIH
89 kDa subunit; Short=TFIIH p89; AltName: Full=Xeroderma
pigmentosum group B-complementing protein
gi|182179|gb|AAA52396.1| DNA repair helicase [Homo sapiens]
gi|14250706|gb|AAH08820.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Homo sapiens]
gi|24286758|gb|AAN46739.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Homo sapiens]
gi|60656181|gb|AAX32654.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [synthetic construct]
gi|62822521|gb|AAY15069.1| unknown [Homo sapiens]
gi|119615719|gb|EAW95313.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_c [Homo sapiens]
gi|123994253|gb|ABM84728.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [synthetic construct]
gi|157928689|gb|ABW03630.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [synthetic construct]
gi|168277380|dbj|BAG10668.1| TFIIH basal transcription factor complex helicase XPB subunit
[synthetic construct]
Length = 782
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|388454156|ref|NP_001253337.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|402892199|ref|XP_003909307.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 1 [Papio anubis]
gi|62510678|sp|Q60HG1.1|ERCC3_MACFA RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|52782215|dbj|BAD51954.1| xeroderma pigmentosum group B complementing factor [Macaca
fascicularis]
gi|380810472|gb|AFE77111.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|383412921|gb|AFH29674.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|384945792|gb|AFI36501.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
Length = 782
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|296204328|ref|XP_002749284.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Callithrix jacchus]
Length = 782
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|158254380|dbj|BAF83163.1| unnamed protein product [Homo sapiens]
Length = 782
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TY M+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYPMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|119615718|gb|EAW95312.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_b [Homo sapiens]
gi|119615720|gb|EAW95314.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_b [Homo sapiens]
Length = 718
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 376 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 435
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 436 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 495
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 496 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 555
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 556 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 615
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 616 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 674
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 675 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 717
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 280 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 339
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 340 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 385
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 227 RRVLTIVQS 235
V +Q+
Sbjct: 61 AAVSVGLQT 69
>gi|60653125|gb|AAX29257.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [synthetic construct]
Length = 783
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKD+P+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDEPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|67967581|dbj|BAE00273.1| unnamed protein product [Macaca fascicularis]
Length = 782
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYELTAYSLYAVVSVGLQT 133
>gi|193787880|dbj|BAG53083.1| unnamed protein product [Homo sapiens]
Length = 718
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 376 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 435
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 436 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 495
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 496 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 555
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 556 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 615
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 616 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 674
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 675 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 717
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 280 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 339
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 340 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 385
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAHSLY 60
Query: 227 RRVLTIVQS 235
V +Q+
Sbjct: 61 AAVSVGLQT 69
>gi|402892201|ref|XP_003909308.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 2 [Papio anubis]
Length = 718
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 376 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 435
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 436 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 495
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 496 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 555
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 556 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 615
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 616 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 674
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 675 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 717
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 280 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 339
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 340 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 385
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 227 RRVLTIVQS 235
V +Q+
Sbjct: 61 AAVSVGLQT 69
>gi|119615717|gb|EAW95311.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_a [Homo sapiens]
Length = 796
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 454 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 513
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 514 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 573
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 574 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVCDTSFDLPE 633
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 634 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 693
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 694 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 752
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 753 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 795
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 358 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 417
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 418 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 463
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|193787168|dbj|BAG52374.1| unnamed protein product [Homo sapiens]
Length = 718
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 376 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 435
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 436 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 495
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 496 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 555
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 556 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 615
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 616 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 674
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 675 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 717
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 280 AGKSLVGVTAVCTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 339
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 340 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 385
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 227 RRVLTIVQS 235
V +Q+
Sbjct: 61 AAVSVGLQT 69
>gi|335302531|ref|XP_003133336.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Sus scrofa]
Length = 782
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E + K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSARSKAATKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHASRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|357619261|gb|EHJ71905.1| haywire, isoform A [Danaus plexippus]
Length = 1047
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/337 (80%), Positives = 302/337 (89%), Gaps = 3/337 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIV SH KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQ
Sbjct: 397 LDEVHTIPAKMFRRVLTIVHSHAKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQAN 456
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYLV K +K++LLYVMNP+K+RA Q+L+ YHERRGDKTI
Sbjct: 457 GYIARVQCAEVWCPMTPEFYREYLVQKINKKMLLYVMNPSKFRACQFLVRYHERRGDKTI 516
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+HYAVKMNKPYIYGPTSQ+ERIQILQNFK NPKVNTIFVSKVADTSFDLPE
Sbjct: 517 VFSDNVFALRHYAVKMNKPYIYGPTSQNERIQILQNFKFNPKVNTIFVSKVADTSFDLPE 576
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFYTLVSQDT+EM+YSRKRQRF
Sbjct: 577 ANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFYTLVSQDTLEMAYSRKRQRF 636
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA-DEERVAGEVGGVS 513
L+NQGYSYKVIT+L GM++E + Y TR+EQG LLQQVLAASETD +E G +
Sbjct: 637 LVNQGYSYKVITELKGMDQEPDLLYGTREEQGMLLQQVLAASETDCEEEREGGAGGAGSA 696
Query: 514 GGFKRSGGTMASLSGADDAVYHESRFSN--VKHPLFK 548
GG +R+ G++ASL+GADDA+Y E R S+ KHPLFK
Sbjct: 697 GGARRTAGSLASLAGADDALYLEHRRSSHHNKHPLFK 733
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKRALVLCNSGVSVEQWK QFK WSTADDSMICRFTSEAKDKPMG
Sbjct: 301 AGKSLVGVTAVCTVRKRALVLCNSGVSVEQWKQQFKCWSTADDSMICRFTSEAKDKPMGA 360
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+H Q+RSWEA+QTM+WLQ QEWG+++LD+ + AK
Sbjct: 361 GILITTYSMITHGQRRSWEAEQTMKWLQAQEWGLVVLDEVHTIPAK 406
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 87/117 (74%), Gaps = 7/117 (5%)
Query: 126 NQEWGIMLLDD------GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179
++E I L+DD GVP AA ++ EK+D VPEDEFGAKDYR QM LKPD+ SRPLW
Sbjct: 26 DEEVTIDLVDDDNPESSGVPGAALQDAEKNDQ-VPEDEFGAKDYRNQMELKPDNASRPLW 84
Query: 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
VAPNGHIFLESFSPVY+HAHDFLIAIAEPV RP+HIHE ++ V +Q++
Sbjct: 85 VAPNGHIFLESFSPVYKHAHDFLIAIAEPVSRPQHIHEYKLTAYSLYAAVSVGLQTN 141
>gi|355686457|gb|AER98064.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mustela putorius furo]
Length = 362
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/342 (75%), Positives = 295/342 (86%), Gaps = 7/342 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 22 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 81
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 82 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 141
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 142 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 201
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 202 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 261
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGME+E + +STR+EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 262 LVDQGYSFKVITKLAGMEDEE-LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 320
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKF 550
R GTM+S+SGADD VY E + K HPLFK+F
Sbjct: 321 QVSRRFGTMSSMSGADDTVYMEYHSARSKASTKHVHPLFKRF 362
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 113 RSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
RSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 1 RSWEAERVMEWLKTQEWGLMILDEVHTIPAK 31
>gi|301783213|ref|XP_002927021.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Ailuropoda melanoleuca]
Length = 778
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 436 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 495
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 496 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 555
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 556 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 615
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 616 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 675
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGME+E + +STR+EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 676 LVDQGYSFKVITKLAGMEDEE-LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 734
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E + K HPLFK+FR
Sbjct: 735 QASRRFGTMSSMSGADDTVYMEYHSARSKASTKHVHPLFKRFR 777
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 340 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 399
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 400 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 445
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKGDHSSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|291391360|ref|XP_002712461.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 3 [Oryctolagus
cuniculus]
Length = 782
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+EL+
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELENN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKATTKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHASRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|410968486|ref|XP_003990735.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Felis catus]
Length = 782
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGME+E + +STR+EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEDEE-LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSSRGKTSTKHVHPLFKRFR 781
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + A+
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAR 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|431912953|gb|ELK14778.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pteropus alecto]
Length = 834
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 295/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 492 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 551
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 552 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 611
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 612 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 671
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG IAEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 672 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMIAEEYNAFFYSLVSQDTQEMAYSTKRQRF 731
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S ++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 732 LVDQGYSFKVITKLAGMEEEE-LAFSMKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 790
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E + K HPLFK+FR
Sbjct: 791 QVSRRFGTMSSMSGADDTVYMEYHSARSKASTKHVHPLFKRFR 833
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CT+RKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 396 AGKSLVGVTAACTIRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 455
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 456 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 501
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSP+Y
Sbjct: 36 EAVPSAAGKQV--DESSTRLDEYGAKDYRLQMPLKDDHSSRPLWVAPDGHIFLEAFSPLY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|417404577|gb|JAA49035.1| Putative rna polymer [Desmodus rotundus]
Length = 782
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGESGFRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E + K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSARSKASAKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLRTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+ + DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DELSTKLDEYGAKDYRLQMPLKADHNSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|126325929|ref|XP_001366494.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Monodelphis domestica]
Length = 783
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/344 (75%), Positives = 296/344 (86%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSSKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRST 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R G+M+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QVSRRFGSMSSMSGADDTVYMEYHTSRSKASVNKHVHPLFKRFR 782
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GH+FLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKLDEYGAKDYRLQMPLKDDHASRPLWVAPDGHVFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPSHVHEYKLTAYSLYAAVSVGLQT 133
>gi|395519351|ref|XP_003763813.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Sarcophilus harrisii]
Length = 783
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/344 (75%), Positives = 296/344 (86%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSSKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKST 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R G+M+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QVSRRFGSMSSMSGADDTVYMEYHSSRSKPSVNKHVHPLFKRFR 782
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GH+FLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKLDEYGAKDYRIQMPLKDDHASRPLWVAPDGHVFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPSHVHEYKLTAYSLYAAVSVGLQT 133
>gi|194222122|ref|XP_001488557.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Equus caballus]
Length = 983
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 259/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 641 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 700
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 701 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 760
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 761 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 820
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 821 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 880
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 881 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 939
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S + HPLFK+FR
Sbjct: 940 QVSRRFGTMSSMSGADDTVYMEYHSSRSRAATKHVHPLFKRFR 982
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 545 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 604
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 605 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 650
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
AP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 280 APDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 334
>gi|47205016|emb|CAF93977.1| unnamed protein product [Tetraodon nigroviridis]
Length = 841
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 262/345 (75%), Positives = 297/345 (86%), Gaps = 10/345 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKL+EANW+ELQ
Sbjct: 498 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLFEANWMELQNN 557
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPM+PEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 558 GYIAKVQCAEVWCPMTPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 617
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 618 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 677
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 678 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 737
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M S+RDEQ QLLQ+VLAAS+ DA+EE VAGEVG
Sbjct: 738 LVDQGYSFKVITKLAGMEEEDLM-LSSRDEQQQLLQKVLAASDLDAEEEVVAGEVGA-RP 795
Query: 515 GFKRSGGTMASLSGADDAVYHE--SRFSNVK------HPLFKKFR 551
F R GTM+S+SGADD VY E SR S HPLFK+FR
Sbjct: 796 QFSRRTGTMSSMSGADDTVYMEYQSRGSKAAAAHKNIHPLFKRFR 840
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 402 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 461
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+M+LD+ + AK
Sbjct: 462 SVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLMILDEVHTIPAK 507
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 74/100 (74%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D + + +DE+GAKDYR+QM +K DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 16 EAVPAAAGKQV--DVSIIKQDEYGAKDYRSQMQMKDDHASRPLWVAPDGHIFLEAFSPVY 73
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFLIAIAEPVCRP HIHE ++ V +Q+
Sbjct: 74 KYAQDFLIAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 113
>gi|410912458|ref|XP_003969706.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Takifugu rubripes]
Length = 781
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/345 (75%), Positives = 296/345 (85%), Gaps = 10/345 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKL+EANW+ELQ
Sbjct: 438 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLFEANWMELQNN 497
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPM+PEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 498 GYIAKVQCAEVWCPMTPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 557
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKP+IYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 558 VFADNVFALKEYAIRLNKPFIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 617
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 618 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 677
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M S+RDE QLLQ+VLAAS+ DA+EE VAGEVG
Sbjct: 678 LVDQGYSFKVITKLAGMEEEDLM-LSSRDEHQQLLQKVLAASDLDAEEEVVAGEVGA-RP 735
Query: 515 GFKRSGGTMASLSGADDAVYHE--SRFSNVK------HPLFKKFR 551
F R GTM+S+SGADD VY E SR S HPLFK+FR
Sbjct: 736 QFSRRTGTMSSMSGADDTVYMEYQSRGSKAAAAHKNIHPLFKRFR 780
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 342 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGC 401
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+M+LD+ + AK
Sbjct: 402 SVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLMILDEVHTIPAK 447
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ + +DE+GAKDYR+QM +K DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 33 EAVPAAAGKQV--DESGIKQDEYGAKDYRSQMQMKDDHASRPLWVAPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFLIAIAEPVCRP HIHE ++ V +Q+
Sbjct: 91 KYAQDFLIAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 130
>gi|62896489|dbj|BAD96185.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 variant [Homo sapiens]
Length = 782
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/343 (75%), Positives = 294/343 (85%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NK YIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKSYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQ F
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQGF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ Q WG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQVWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|291225864|ref|XP_002732918.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 3-like [Saccoglossus
kowalevskii]
Length = 824
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 261/340 (76%), Positives = 294/340 (86%), Gaps = 4/340 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+ FRRVLT VQ+HCKLGLTATL+REDDKIADLNFLIGPKLYEANWLELQ
Sbjct: 485 LDEVHTIPARQFRRVLTSVQAHCKLGLTATLVREDDKIADLNFLIGPKLYEANWLELQDL 544
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIA+VQCAEVWCPM+PEFYREYL ++ KR+LLYVMNPNK+RA ++L+ YHE+R DK I
Sbjct: 545 GFIAKVQCAEVWCPMTPEFYREYLHIQSRKRILLYVMNPNKFRACEFLVKYHEQRNDKVI 604
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYAV M KPYIYGPT+Q ER+QILQNFK NP VNTIF+SKV DTSFDLPE
Sbjct: 605 VFSDNVFALKHYAVAMGKPYIYGPTTQGERMQILQNFKHNPAVNTIFISKVGDTSFDLPE 664
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQ+SSHGGSRRQEAQRLGRILRAKKG+ AEEYNAFFYTLVSQDT EM YS KRQRF
Sbjct: 665 ANVLIQVSSHGGSRRQEAQRLGRILRAKKGSAAEEYNAFFYTLVSQDTQEMYYSIKRQRF 724
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYS+KVITKLAGM+E+ +HYST+ EQ +LLQQVLAAS+ DADEERV GE+
Sbjct: 725 LVNQGYSFKVITKLAGMDEDH-LHYSTKHEQQRLLQQVLAASDADADEERVVGELNAKGS 783
Query: 515 GFKRSGGTMASLSGADDAVYHESRF-SNVK--HPLFKKFR 551
R G+M+S+SGADD VY E + S +K HPLFKKFR
Sbjct: 784 QVVRRVGSMSSMSGADDQVYMEFQSKSKLKSSHPLFKKFR 823
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 94/107 (87%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTVRKR +VLC SGVSVEQWK QFKLWST+DDSMICRFTSEAKDKPMGC
Sbjct: 389 AGKTLVGVTAACTVRKRCMVLCTSGVSVEQWKSQFKLWSTSDDSMICRFTSEAKDKPMGC 448
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
+L+TTYSM+ H+ KRSWEA++ M+W+ +QEWG+MLLD+ + A++
Sbjct: 449 SVLITTYSMMGHSTKRSWEAEKVMEWIHHQEWGLMLLDEVHTIPARQ 495
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 101/190 (53%), Gaps = 31/190 (16%)
Query: 54 RALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTY-------SM 106
+AL NSG W++ IC+ +S P +L++ Y S
Sbjct: 3 KALSNLNSGFRRSHWRN------------ICKRSSGF---PQNGQLLLSRYLHDKTRKSK 47
Query: 107 ISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQ 166
S + WE D + G +P AA + V +D V EDEFGAKDYR Q
Sbjct: 48 KSKIDEPQWEED-------DSSLGPEGATSDLPGAASRGVTED--KVLEDEFGAKDYRDQ 98
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLW+APNG+IFLESFSPVY+HA DFLIAIAEPVCRP +IHE ++
Sbjct: 99 MKLKTDHSSRPLWLAPNGYIFLESFSPVYKHARDFLIAIAEPVCRPRNIHEYRLTAYSLY 158
Query: 227 RRVLTIVQSH 236
V +Q++
Sbjct: 159 AAVSVGLQTN 168
>gi|432851969|ref|XP_004067131.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Oryzias latipes]
Length = 783
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/345 (74%), Positives = 297/345 (86%), Gaps = 10/345 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YAV++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAVRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGM+EE M +STR+EQ QLLQ+VLAAS+ DA++E VA E+ GV
Sbjct: 680 LVDQGYSFKVITKLAGMDEEDLM-FSTREEQQQLLQKVLAASDLDAEDEIVATEL-GVRP 737
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK--------HPLFKKFR 551
R GTM+S+SGADD VY E + + K HPLFK+FR
Sbjct: 738 QVSRRAGTMSSMSGADDTVYMEYQSKSNKASFGAKSVHPLFKRFR 782
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 91/106 (85%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST D+S+ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDESLICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+++LD+ + A+
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHTIPAR 449
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 34 EAVPAAAGKQV--DESGTKLDEYGAKDYRVQMLLKNDHSSRPLWVAPDGHIFLEAFSPVY 91
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 92 KYAQDFLVAIAEPVCRPNHIHEYKLTAYSLYAAVSVGLQT 131
>gi|120538319|gb|AAI29781.1| LOC100036984 protein [Xenopus laevis]
Length = 772
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 259/345 (75%), Positives = 295/345 (85%), Gaps = 9/345 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 428 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 487
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 488 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 547
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 548 VFADNVFALKEYAIRLCKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 607
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 608 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 667
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST+++Q QLLQ+VLAAS+ DA+EE VAGE G S
Sbjct: 668 LVDQGYSFKVITKLAGMEEE-DLAFSTKEDQHQLLQKVLAASDLDAEEEIVAGEFGSRSS 726
Query: 515 -GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R GTM+S+SGADDAVY E K HPLFK+FR
Sbjct: 727 MQVSRRIGTMSSMSGADDAVYMEYHTPRNKGASNKHVHPLFKRFR 771
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 332 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGC 391
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL++QEWG+M+LD+ + AK
Sbjct: 392 SIAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAK 437
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+A +DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 24 EAVPSAAGKQV--DEAGTKQDEYGAKDYRLQMPLKGDHSSRPLWVAPDGHIFLEAFSPVY 81
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AI+EPVCRP HIHE ++ V +Q+
Sbjct: 82 KYAQDFLVAISEPVCRPSHIHEYKLTAYSLYAAVSVGLQT 121
>gi|405957836|gb|EKC24016.1| TFIIH basal transcription factor complex helicase XPB subunit
[Crassostrea gigas]
Length = 493
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 262/345 (75%), Positives = 295/345 (85%), Gaps = 14/345 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV TIPAKMFRRVLTIV +HCKLGLTATL+REDDKIADLNFLIGPKLYEANW+ELQ
Sbjct: 153 LDEVQTIPAKMFRRVLTIVNAHCKLGLTATLVREDDKIADLNFLIGPKLYEANWMELQNN 212
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPM+PEFYREYL K+ K+LLL V+NPNK+RA Q+LI YHERR DK I
Sbjct: 213 GYIARVQCAEVWCPMAPEFYREYLNTKSQKKLLLAVVNPNKFRACQFLIRYHERRNDKII 272
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA+K+NKPY+YGPTSQ ER+QILQNF NPKVNTIFVSKVADTSFDLPE
Sbjct: 273 VFSDNVFALKSYAIKLNKPYLYGPTSQGERMQILQNFVHNPKVNTIFVSKVADTSFDLPE 332
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+HGGSRRQEAQR+GRILRAKKGA+AEEYNAFFY+LVSQDTMEM +S KRQRF
Sbjct: 333 ANVLIQISAHGGSRRQEAQRMGRILRAKKGAVAEEYNAFFYSLVSQDTMEMHFSLKRQRF 392
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKVITKLAGMEEE + YST++EQ +LLQ V AA+E DA+EERV GE G
Sbjct: 393 LVNQGYAYKVITKLAGMEEE-ALGYSTKEEQAKLLQAVCAATEQDAEEERVIGE-----G 446
Query: 515 GF--KRSGGTMASLSGADDAVYHESR------FSNVKHPLFKKFR 551
GF R G+M+S+SGADD +Y E R S HPLFK+FR
Sbjct: 447 GFLVSRKVGSMSSMSGADDNLYMEFRGKKGMVASGHAHPLFKRFR 491
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 93/115 (80%), Gaps = 9/115 (7%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVGVTA CTVRKRA+ L SGV+VEQWK QFK+WSTADDS+ICRFTS+AKDKP+
Sbjct: 48 AGKTLVGVTAACTVRKRAICLATSGVAVEQWKQQFKMWSTADDSIICRFTSDAKDKPIGN 107
Query: 96 -------GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G IL++TYSM++H+ KRSWEA++ M+W+Q+QEWGIM+LD+ + AK
Sbjct: 108 CIFVSKEGSSILISTYSMLAHSTKRSWEAEKVMEWMQSQEWGIMILDEVQTIPAK 162
>gi|444721477|gb|ELW62213.1| TFIIH basal transcription factor complex helicase XPB subunit
[Tupaia chinensis]
Length = 761
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/335 (76%), Positives = 289/335 (86%), Gaps = 7/335 (2%)
Query: 223 AKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQC 282
AKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ G+IA+VQC
Sbjct: 427 AKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQC 486
Query: 283 AEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFA 342
AEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK IVF+DNVFA
Sbjct: 487 AEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFA 546
Query: 343 LKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQIS 402
LK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPEANVLIQIS
Sbjct: 547 LKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQIS 606
Query: 403 SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSY 462
SHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRFL++QGYS+
Sbjct: 607 SHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSF 666
Query: 463 KVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSGGFKRSGGT 522
KVITKLAGMEEE + +ST+DEQ QLLQ+VLAA++ DA+EE VAGE G S R GT
Sbjct: 667 KVITKLAGMEEE-DLAFSTKDEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGT 725
Query: 523 MASLSGADDAVYHESRFSNVK------HPLFKKFR 551
M+S+SGADD VY E S K HPLFK+FR
Sbjct: 726 MSSMSGADDTVYMEYHSSRSKASAKHVHPLFKRFR 760
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 72/87 (82%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 334 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 393
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWL 124
I ++TYSM+ HT KRSWEA++ L
Sbjct: 394 SIAISTYSMLGHTTKRSWEAERVFSSL 420
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|194332647|ref|NP_001123812.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Xenopus (Silurana) tropicalis]
gi|189441808|gb|AAI67617.1| LOC100170563 protein [Xenopus (Silurana) tropicalis]
Length = 786
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 256/345 (74%), Positives = 294/345 (85%), Gaps = 9/345 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 442 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 501
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 502 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 561
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA++++KPYIYGPTSQ ER+ ILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 562 VFADNVFALKEYAIRLSKPYIYGPTSQGERMHILQNFKHNPKINTIFISKVGDTSFDLPE 621
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 622 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 681
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S +++Q QLLQ+VLAAS+ DA+EE V GE G S
Sbjct: 682 LVDQGYSFKVITKLAGMEEEH-LAFSNKEDQQQLLQKVLAASDLDAEEEVVVGEFGSRST 740
Query: 515 -GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R GTM+S+SGADDAVY E S + HPLFK+FR
Sbjct: 741 MQVSRRVGTMSSMSGADDAVYMEYHTSRNRGASNKHVHPLFKRFR 785
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 346 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 405
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL++QEWG+M+LD+ + AK
Sbjct: 406 SIAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAK 451
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+A +DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 37 EAVPSAAGKQV--DEAGTKQDEYGAKDYRLQMPLKMDHSSRPLWVAPDGHIFLEAFSPVY 94
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AI+EPVCRP H HE ++ V +Q+
Sbjct: 95 KYAQDFLVAISEPVCRPSHTHEYKLTAYSLYAAVSVGLQT 134
>gi|443733454|gb|ELU17809.1| hypothetical protein CAPTEDRAFT_153297 [Capitella teleta]
Length = 739
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 261/341 (76%), Positives = 293/341 (85%), Gaps = 6/341 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV IPAKMFRRVL+ VQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANWLELQ
Sbjct: 400 LDEVQFIPAKMFRRVLSSVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWLELQAN 459
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIA+VQCAEVWCPMSPEFYREYL KT KR+LLYV NPNK+RA Q+LI +HERR DK I
Sbjct: 460 GFIAKVQCAEVWCPMSPEFYREYLNTKTRKRMLLYVANPNKFRACQFLIRFHERRNDKII 519
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA+K+NKPY+YGPTSQSERI ILQNF+ NPKVNTIFVSKVAD SFDLPE
Sbjct: 520 VFSDNVFALKSYAIKLNKPYLYGPTSQSERIHILQNFQHNPKVNTIFVSKVADNSFDLPE 579
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFY+LVSQDTMEM Y+ KRQRF
Sbjct: 580 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAVAEEYNAFFYSLVSQDTMEMHYATKRQRF 639
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYSYKVITKLAGM+EE + +ST+++Q +LQ+VLAA++TDADEE+ E G
Sbjct: 640 LVNQGYSYKVITKLAGMDEE-DLEFSTKEDQAAMLQKVLAATDTDADEEK-GLEAGSGKS 697
Query: 515 GFKRSGGTMASLSGADDAVYHE---SRFSN-VKHPLFKKFR 551
R G+M+S+SGADDAVY E + SN HPLFKKFR
Sbjct: 698 MVHRRPGSMSSMSGADDAVYMEFQARKHSNAASHPLFKKFR 738
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 92/106 (86%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTV+KR +VLC SGV+VEQW+ QFK+WST DDS+ICRFTS+AKDKPMGC
Sbjct: 304 AGKTLVGVTAACTVKKRCMVLCTSGVAVEQWRSQFKMWSTCDDSLICRFTSDAKDKPMGC 363
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSMISHT KRSWEA++ M+W+Q QEWG+M+LD+ + AK
Sbjct: 364 SICISTYSMISHTMKRSWEAERVMEWMQQQEWGLMILDEVQFIPAK 409
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 55/66 (83%)
Query: 152 AVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCR 211
P+DEFG KD R+ + LK DH RPLWV P+GHIFLESFSPVY+HAHDFLIAIAEPVCR
Sbjct: 6 GAPDDEFGGKDLRSMLSLKADHVVRPLWVTPDGHIFLESFSPVYKHAHDFLIAIAEPVCR 65
Query: 212 PEHIHE 217
PEHI E
Sbjct: 66 PEHIQE 71
>gi|260821664|ref|XP_002606152.1| hypothetical protein BRAFLDRAFT_126483 [Branchiostoma floridae]
gi|229291491|gb|EEN62162.1| hypothetical protein BRAFLDRAFT_126483 [Branchiostoma floridae]
Length = 798
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/340 (74%), Positives = 290/340 (85%), Gaps = 5/340 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVL ++Q+HCKLGLTATL+REDDKIADLNFLIGPKLYEANW+ELQ
Sbjct: 460 LDEVHTIPAKQFRRVLMVIQAHCKLGLTATLVREDDKIADLNFLIGPKLYEANWMELQNN 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
FIARVQCAEVWCPM+PEFYREYL +T KR LLY MNPNK+RA Q+L+ +HERR DK I
Sbjct: 520 NFIARVQCAEVWCPMTPEFYREYLAIQTKKRTLLYTMNPNKFRACQFLVRFHERRNDKVI 579
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA +M KP+IYGPTSQ ER+ +LQNF+ NPKVNTIF+SKV DTSFDLPE
Sbjct: 580 VFSDNVFALKEYAKRMGKPFIYGPTSQGERMHVLQNFQHNPKVNTIFISKVGDTSFDLPE 639
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQ+SSHGGSRRQEAQRLGRILRAKKG++AEEYNAFFYTLVSQDTMEM+YS+KRQ F
Sbjct: 640 ANVLIQVSSHGGSRRQEAQRLGRILRAKKGSVAEEYNAFFYTLVSQDTMEMTYSQKRQSF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LINQGYS+KVITKLAGM+EE + +S + EQ +LLQ+VLAAS+ DA+EE V GE G SG
Sbjct: 700 LINQGYSFKVITKLAGMDEE-DLAFSNKKEQRELLQRVLAASDADAEEEVVPGESKG-SG 757
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK---HPLFKKFR 551
R G+MAS+SGADD +Y E + + HPLFKKFR
Sbjct: 758 QVTRKVGSMASMSGADDTIYMEYKTGPRRTHTHPLFKKFR 797
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 91/107 (85%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTVRKR +VLC S VSVEQWK QFKLW+ DDS ICRFT++AKDKP+GC
Sbjct: 364 AGKTLVGVTAACTVRKRCIVLCTSAVSVEQWKSQFKLWANIDDSTICRFTADAKDKPIGC 423
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
+ ++TYSMI+HT KRS+E+++ M+WLQ+QEWG+MLLD+ + AK+
Sbjct: 424 NVAISTYSMIAHTTKRSYESEKVMEWLQSQEWGLMLLDEVHTIPAKQ 470
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 72/100 (72%)
Query: 137 GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYR 196
G VAA + D++ DE+GAKDYR M LK DH SRPLWVAPNGHIFLE+FSPVY+
Sbjct: 40 GAEVAAIATRQTDESTGDTDEYGAKDYRKIMELKSDHASRPLWVAPNGHIFLEAFSPVYK 99
Query: 197 HAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
HAHDFLIAI+EPVCRPEHIHE ++ V +Q++
Sbjct: 100 HAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTN 139
>gi|327282808|ref|XP_003226134.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Anolis carolinensis]
Length = 781
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/344 (75%), Positives = 295/344 (85%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 438 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 497
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 498 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 557
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YAV++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 558 VFADNVFALKEYAVRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 617
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 618 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 677
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M +S+++EQ QLLQ+VL AS+ DA+EE VAGE G S
Sbjct: 678 LVDQGYSFKVITKLAGMEEEDLM-FSSKEEQQQLLQKVLQASDMDAEEEVVAGEYGSKSS 736
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R GTM+S+SGADD VY E + S K HPLFK+FR
Sbjct: 737 QVSRHYGTMSSMSGADDTVYMEYQTSRSKASSNKHVHPLFKRFR 780
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA TVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 342 AGKSLVGVTAASTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 401
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL++QEWG+M+LD+ + AK
Sbjct: 402 SIAISTYSMLGHTTKRSWEAEKVMEWLKSQEWGLMILDEVHTIPAK 447
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE V DE+GAKDYR+QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 34 EAVPSAAGKQVEVSGKKV--DEYGAKDYRSQMQLKDDHSSRPLWVAPDGHIFLEAFSPVY 91
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
++A DFL+AIAEPVCRP HIHE ++ V +Q++
Sbjct: 92 KYAQDFLVAIAEPVCRPSHIHEYKLTAYSLYAAVSVGLQTN 132
>gi|387019089|gb|AFJ51662.1| TFIIH basal transcription factor complex helicase XPB subunit-like
[Crotalus adamanteus]
Length = 779
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/344 (75%), Positives = 295/344 (85%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 436 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 495
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 496 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 555
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YAV++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 556 VFADNVFALKEYAVRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 615
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG IAEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 616 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMIAEEYNAFFYSLVSQDTQEMAYSTKRQRF 675
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M +S++++Q QLLQ+VL AS+ DA+EE VAGE G S
Sbjct: 676 LVDQGYSFKVITKLAGMEEEELM-FSSKEDQQQLLQKVLQASDLDAEEEVVAGEYGSKSS 734
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R GTM+S+SGADD VY E + S K HPLFK+FR
Sbjct: 735 QISRHYGTMSSMSGADDTVYMEYQTSRSKASSNKHIHPLFKRFR 778
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 340 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 399
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL++QEWG+M+LD+ + AK
Sbjct: 400 SIAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAK 445
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE D+ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 33 EAVPSAAGKQVE--DSGTKVDEYGAKDYRNQMPLKADHSSRPLWVAPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 91 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 130
>gi|326922956|ref|XP_003207708.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Meleagris gallopavo]
Length = 733
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 258/344 (75%), Positives = 295/344 (85%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 390 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 449
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 450 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 509
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 510 VFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 569
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 570 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 629
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VL AS+ DA+EE VAGE G S
Sbjct: 630 LVDQGYSFKVITKLAGMEEEE-LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSV 688
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R GTM+S+SGADDAVY E S K HPLFK+FR
Sbjct: 689 QMSRRTGTMSSMSGADDAVYMEYHSSRSKASSNKHIHPLFKRFR 732
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+ C
Sbjct: 294 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDC 353
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+++EWG+M+LD+ + AK
Sbjct: 354 SIAISTYSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAK 399
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
AP+GHIFLE+FSPVY++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 29 APDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 83
>gi|449506509|ref|XP_002192901.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Taeniopygia guttata]
Length = 782
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/344 (75%), Positives = 294/344 (85%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 439 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 499 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YAV++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 559 VFADNVFALKEYAVRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 619 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 678
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VL AS+ DA+EE VAGE G S
Sbjct: 679 LVDQGYSFKVITKLAGMEEEE-LSFSTKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSA 737
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 738 QVSRRAGTMSSMSGADDTVYMEYHSSRSKASASKHIHPLFKRFR 781
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 343 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 402
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL++QEWG+M+LD+ + AK
Sbjct: 403 SVAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAK 448
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE+ V DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 37 EAVPSAAGKQVEESGTKV--DEYGAKDYRLQMPLKADHSSRPLWVAPDGHIFLEAFSPVY 94
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 95 KYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 134
>gi|449270402|gb|EMC81080.1| TFIIH basal transcription factor complex helicase XPB subunit,
partial [Columba livia]
Length = 705
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/344 (74%), Positives = 296/344 (86%), Gaps = 8/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 362 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 421
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 422 GYIAKVQCAEVWCPMSPEFYREYIAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 481
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 482 VFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 541
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 542 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGTVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 601
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VL AS+ DA+EE VAGE G S
Sbjct: 602 LVDQGYSFKVITKLAGMEEEE-LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSA 660
Query: 515 GFKRSGGTMASLSGADDAVYHE-----SRFSNVK--HPLFKKFR 551
R GTM+S+SGADD Y E S+ S+ K HPLFK+FR
Sbjct: 661 QVSRRTGTMSSMSGADDMAYMEYHSARSKTSSNKHIHPLFKRFR 704
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 266 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 325
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL++QEWG+M+LD+ + AK
Sbjct: 326 SIAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAK 371
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
AP+GHIFLE+FSP+Y++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 1 APDGHIFLEAFSPIYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 55
>gi|198426377|ref|XP_002119177.1| PREDICTED: hypothetical protein [Ciona intestinalis]
Length = 794
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/343 (72%), Positives = 293/343 (85%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVLT+VQSHCKLGLTATL+REDDKI+DLNFLIGPKLYEANW+ELQ
Sbjct: 453 LDEVHTIPAKQFRRVLTVVQSHCKLGLTATLVREDDKISDLNFLIGPKLYEANWMELQNG 512
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL ++ KRLLLYVMNPNK+RA Q+L+ +HERR DK +
Sbjct: 513 GFIARVQCAEVWCPMTPEFYREYLSIRSRKRLLLYVMNPNKFRACQFLVRFHERRNDKIV 572
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YAV+M KPYIYGPT+Q ER+QILQNF NPKVNTIF+SKV D S DLP
Sbjct: 573 VFSDNVFALKEYAVRMGKPYIYGPTTQGERLQILQNFIHNPKVNTIFISKVGDNSIDLPA 632
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQ+SSHGGSRRQEAQRLGRILRAKKG++AEEYNAFFY+LVSQDT+E++YS KRQRF
Sbjct: 633 ANVLIQVSSHGGSRRQEAQRLGRILRAKKGSLAEEYNAFFYSLVSQDTVEVAYSTKRQRF 692
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L++QGYS+K IT L G++EE + ++T+DEQ LLQ+VLAAS+ DA+EE V GE G
Sbjct: 693 LVDQGYSFKAITHLTGIDEEEQLAFTTKDEQHALLQKVLAASDLDAEEEMVPGEFGVGDK 752
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK---HPLFKKFR 551
GGF+R+G M+S+SGADD+VY E R + + H LFK+FR
Sbjct: 753 GKGGFRRAGA-MSSMSGADDSVYMEYRKTKQRKGVHDLFKQFR 794
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 93/107 (86%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTVRKR +VLC SGV+VEQW+ QFK+WSTADDSMICRFTS+AKD+P GC
Sbjct: 357 AGKTLVGVTAACTVRKRCMVLCTSGVAVEQWRSQFKMWSTADDSMICRFTSDAKDRPHGC 416
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I ++TYSM+ H+ KRS+E+++ M+W+++QEWG+++LD+ + AK+
Sbjct: 417 SIAISTYSMMGHSMKRSYESEKVMEWIRSQEWGLIVLDEVHTIPAKQ 463
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 3/95 (3%)
Query: 138 VPVAAKKNVEKDDAAVPE---DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
VP AA +N++ + D+FGAKDYR+ M +K DH SRPL++AP+GHIFLESFSPV
Sbjct: 40 VPAAAGRNIDSNTTTASSALLDKFGAKDYRSNMEMKKDHASRPLYLAPDGHIFLESFSPV 99
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
Y+HA DFLIAI+EP+CRP+ IHE P ++ V
Sbjct: 100 YKHARDFLIAISEPICRPKFIHEFRLTPYSLYAAV 134
>gi|194294489|ref|NP_001123567.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Ciona intestinalis]
gi|1764011|emb|CAB06045.1| COS41.1 [Ciona intestinalis]
Length = 793
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/343 (72%), Positives = 293/343 (85%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVLT+VQSHCKLGLTATL+REDDKI+DLNFLIGPKLYEANW+ELQ
Sbjct: 452 LDEVHTIPAKQFRRVLTVVQSHCKLGLTATLVREDDKISDLNFLIGPKLYEANWMELQNG 511
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL ++ KRLLLYVMNPNK+RA Q+L+ +HERR DK +
Sbjct: 512 GFIARVQCAEVWCPMTPEFYREYLSIRSRKRLLLYVMNPNKFRACQFLVRFHERRNDKIV 571
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YAV+M KPYIYGPT+Q ER+QILQNF NPKVNTIF+SKV D S DLP
Sbjct: 572 VFSDNVFALKEYAVRMGKPYIYGPTTQGERLQILQNFIHNPKVNTIFISKVGDNSIDLPA 631
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQ+SSHGGSRRQEAQRLGRILRAKKG++AEEYNAFFY+LVSQDT+E++YS KRQRF
Sbjct: 632 ANVLIQVSSHGGSRRQEAQRLGRILRAKKGSLAEEYNAFFYSLVSQDTVEVAYSTKRQRF 691
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---G 511
L++QGYS+K IT L G++EE + ++T+DEQ LLQ+VLAAS+ DA+EE V GE G
Sbjct: 692 LVDQGYSFKAITHLTGIDEEEQLAFTTKDEQHALLQKVLAASDLDAEEEMVPGEFGVGDK 751
Query: 512 VSGGFKRSGGTMASLSGADDAVYHESRFSNVK---HPLFKKFR 551
GGF+R+G M+S+SGADD+VY E R + + H LFK+FR
Sbjct: 752 GKGGFRRAGA-MSSMSGADDSVYMEYRKTKQRKGVHDLFKQFR 793
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 93/107 (86%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTVRKR +VLC SGV+VEQW+ QFK+WSTADDSMICRFTS+AKD+P GC
Sbjct: 356 AGKTLVGVTAACTVRKRCMVLCTSGVAVEQWRSQFKMWSTADDSMICRFTSDAKDRPHGC 415
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I ++TYSM+ H+ KRS+E+++ M+W+++QEWG+++LD+ + AK+
Sbjct: 416 SIAISTYSMMGHSMKRSYESEKVMEWIRSQEWGLIVLDEVHTIPAKQ 462
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 3/96 (3%)
Query: 137 GVPVAAKKNVEKDDAAVPE---DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 193
VP AA +N++ + D+FGAKDYR+ M +K DH SRPL++AP+GHIFLESFSP
Sbjct: 38 AVPAAAGRNIDSNTNTASSALLDKFGAKDYRSNMEMKKDHASRPLYLAPDGHIFLESFSP 97
Query: 194 VYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
VY+HA DFLIAI+EP+CRP+ IHE P ++ V
Sbjct: 98 VYKHARDFLIAISEPICRPKFIHEFRLTPYSLYAAV 133
>gi|156392034|ref|XP_001635854.1| predicted protein [Nematostella vectensis]
gi|156222952|gb|EDO43791.1| predicted protein [Nematostella vectensis]
Length = 734
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/340 (74%), Positives = 286/340 (84%), Gaps = 4/340 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVLT+VQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 395 LDEVHTIPAKQFRRVLTVVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWMELQNS 454
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFY EYL KT KR LLYVMNPNK+R+ ++LI YHERR DK I
Sbjct: 455 GFIARVQCAEVWCPMTPEFYSEYLNIKTRKRKLLYVMNPNKFRSCEFLIRYHERRNDKVI 514
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL++YA+K+ KP+IYGPTSQ ERI ILQNF+ NP VNTIF+SKV D SFDLPE
Sbjct: 515 VFSDNVFALRNYAIKLQKPFIYGPTSQGERISILQNFQHNPLVNTIFISKVGDNSFDLPE 574
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKK AEEYNAFFYTLVS DT EM YS KRQRF
Sbjct: 575 ANVLIQISSHGGSRRQEAQRLGRILRAKKDMAAEEYNAFFYTLVSTDTEEMYYSSKRQRF 634
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYS+KVIT+LAGMEEE ++ S++ EQ +LLQ+VLAAS+ DA+EE+ A + G G
Sbjct: 635 LVNQGYSFKVITRLAGMEEE-NLNLSSKKEQHELLQKVLAASDVDAEEEKTAADFGQKGG 693
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK---HPLFKKFR 551
R G+MAS+SGADD +Y E + S K HPLFKKFR
Sbjct: 694 AVSRRVGSMASMSGADDMIYLEYKSSKSKLARHPLFKKFR 733
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 89/109 (81%)
Query: 36 PSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM 95
P AGK+LVGVTA CTVRKR LVLC SGV+VEQWK+QFKLWST + +IC FTS+AKDKP
Sbjct: 297 PGAGKTLVGVTAACTVRKRCLVLCTSGVAVEQWKNQFKLWSTVNSRIICCFTSDAKDKPT 356
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
C I ++TYSM+SH KRSWEA+Q M +LQ+QEWG+M+LD+ + AK+
Sbjct: 357 DCSIAISTYSMVSHMGKRSWEAEQVMSFLQSQEWGLMILDEVHTIPAKQ 405
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 66/81 (81%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
DEFGAKDYR Q+ LKPDH SRPLWVAP+GHIFLESFSPVY+HAHDFLIAI+EPVCRPEH+
Sbjct: 1 DEFGAKDYRKQIELKPDHASRPLWVAPDGHIFLESFSPVYKHAHDFLIAISEPVCRPEHV 60
Query: 216 HEVHTIPAKMFRRVLTIVQSH 236
HE ++ V +Q++
Sbjct: 61 HEYRLTAYSLYAAVSVGLQTN 81
>gi|57529720|ref|NP_001006523.1| TFIIH basal transcription factor complex helicase XPB subunit
[Gallus gallus]
gi|82082180|sp|Q5ZKK7.1|ERCC3_CHICK RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|53130814|emb|CAG31736.1| hypothetical protein RCJMB04_10e8 [Gallus gallus]
Length = 788
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 253/340 (74%), Positives = 289/340 (85%), Gaps = 8/340 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKL LTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 437 LDEVHTIPAKMFRRVLTIVQAHCKLELTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 496
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 497 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 556
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 557 VFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 616
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 617 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 676
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VL AS+ DA+EE VAGE G S
Sbjct: 677 LVDQGYSFKVITKLAGMEEEE-LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSV 735
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLF 547
R GTM+S+SGADDAVY E S K HPL
Sbjct: 736 QMSRRTGTMSSMSGADDAVYMEYHSSRSKASSNKHIHPLL 775
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+ C
Sbjct: 341 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDC 400
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+++EWG+M+LD+ + AK
Sbjct: 401 SIAISTYSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAK 446
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPLWVAP+GHIFLE+FSPVY
Sbjct: 33 EAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 91 KYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 130
>gi|196001637|ref|XP_002110686.1| hypothetical protein TRIADDRAFT_22911 [Trichoplax adhaerens]
gi|190586637|gb|EDV26690.1| hypothetical protein TRIADDRAFT_22911, partial [Trichoplax
adhaerens]
Length = 704
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/341 (72%), Positives = 283/341 (82%), Gaps = 5/341 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVLT+V +HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 364 LDEVHTIPAKQFRRVLTVVHAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWMELQSL 423
Query: 275 GFIARVQCAE--VWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332
FIARVQCAE VWCPMSPEFYREYL KT K +L YVMNPNK+RA Q+LI YHERR DK
Sbjct: 424 NFIARVQCAEACVWCPMSPEFYREYLTTKTRKHMLFYVMNPNKFRACQFLIKYHERRNDK 483
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSDNVF LKHYA+++ KPYIYGPT+Q ER+QILQNF+ NP VN IF+SKV D SFDL
Sbjct: 484 VIVFSDNVFGLKHYAIELGKPYIYGPTAQKERLQILQNFQHNPLVNCIFISKVGDNSFDL 543
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
PEANVLIQISSHGGSRRQEAQRLGRILRAKK + EEYNA+FY+LVSQDT EM +S KRQ
Sbjct: 544 PEANVLIQISSHGGSRRQEAQRLGRILRAKKDSATEEYNAYFYSLVSQDTQEMYFSSKRQ 603
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV 512
RFLINQGYS+KVITKL+GM++E + Y+ + +Q QLLQ+VLAA+ETDA+EE+VAG+
Sbjct: 604 RFLINQGYSFKVITKLSGMDDE-NLLYTEKKDQHQLLQKVLAANETDAEEEKVAGDTYST 662
Query: 513 SGGFK--RSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
S + R +MASLSGADD VY E +HPLFKKFR
Sbjct: 663 SSKSQVVRRTTSMASLSGADDLVYLEYNKPKQRHPLFKKFR 703
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 91/107 (85%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTV+KR LVLC SGV+VEQWK QFKLWST D+S+I RFTS+AKDKP GC
Sbjct: 268 AGKTLVGVTAACTVKKRCLVLCTSGVAVEQWKAQFKLWSTIDESLISRFTSDAKDKPSGC 327
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
+ ++TYSM++HT KRSWE+++ M++LQ QEWG+M+LD+ + AK+
Sbjct: 328 SVAISTYSMVAHTTKRSWESERVMEYLQGQEWGLMILDEVHTIPAKQ 374
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 66/80 (82%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
D++GAKDYR M LKPDH++RPLWVAP+GHIFLE+FSPVY+HAHDFLIAI+EP+CRPEH+
Sbjct: 1 DDYGAKDYRDVMQLKPDHRTRPLWVAPDGHIFLEAFSPVYKHAHDFLIAISEPICRPEHV 60
Query: 216 HEVHTIPAKMFRRVLTIVQS 235
HE P ++ V +Q+
Sbjct: 61 HEYKLTPYSLYAAVSVGLQT 80
>gi|358332745|dbj|GAA39781.2| DNA excision repair protein ERCC-3 [Clonorchis sinensis]
Length = 931
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/352 (70%), Positives = 287/352 (81%), Gaps = 16/352 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANWLELQ+R
Sbjct: 580 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWLELQQR 639
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCP++PEFYREYL K+ K+LLL VMNPNK+RA ++LI YHERR DK I
Sbjct: 640 GFIARVQCAEVWCPVTPEFYREYLNMKSMKKLLLAVMNPNKFRACEFLIRYHERRNDKII 699
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK+YA+KM +PY+YGPTSQ+ER+Q+LQNF+ NP V IFVSKVAD SFDLPE
Sbjct: 700 VFSDNVFALKYYAMKMGRPYLYGPTSQAERMQVLQNFQHNPNVPAIFVSKVADNSFDLPE 759
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A VLIQIS+HGGSRRQEAQRLGRILRAK+G AE YNAFFY+LVSQDTMEM Y+ KRQRF
Sbjct: 760 ATVLIQISAHGGSRRQEAQRLGRILRAKRGMDAEAYNAFFYSLVSQDTMEMQYALKRQRF 819
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVS- 513
L+NQGY+YKVIT+LAGME E + ST+ EQ +LL +VLA++E DA EER+ + V+
Sbjct: 820 LVNQGYAYKVITRLAGMENE-PLKLSTKQEQAELLHRVLASTEEDAMEERLPTDPDDVTG 878
Query: 514 -------GGFKRSGGTMASLSGADDAVYHESRF-------SNVKHPLFKKFR 551
G R MASLSGADDA+Y ++ S +HPLF+ FR
Sbjct: 879 LKRTAPVGSAVRKASRMASLSGADDAIYMDTSSAASRKDKSKERHPLFRLFR 930
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP-MG 96
AGK+LVGVTA CT+RK VL SGV+VEQW+ QF+LWST +DS I RFTS+AKD+P
Sbjct: 483 AGKTLVGVTAACTIRKPTFVLGTSGVAVEQWRSQFRLWSTIEDSQILRFTSDAKDRPSTS 542
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TY+MI+H+ KRS+EAD+ M+W++ QEWG+M+LD+ + AK
Sbjct: 543 ACVCISTYTMIAHSTKRSYEADRMMEWIKGQEWGLMILDEVHTIPAK 589
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 60/102 (58%), Gaps = 19/102 (18%)
Query: 116 EADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175
EAD+T Q G+M P DEFGAKD R + L+PDH
Sbjct: 110 EADRTTASATKQTNGVM-------------------CTPRDEFGAKDMRNILSLRPDHPC 150
Query: 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
RPLWV P+GHIFLE+F P+ R A DFL+AIAEPVCRP HIHE
Sbjct: 151 RPLWVGPDGHIFLEAFGPLSRQAQDFLVAIAEPVCRPTHIHE 192
>gi|391336830|ref|XP_003742781.1| PREDICTED: DNA excision repair protein haywire-like [Metaseiulus
occidentalis]
Length = 775
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/342 (71%), Positives = 284/342 (83%), Gaps = 11/342 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLT+VQ+HCKLGLTATL+REDDKIADLNFLIGPK+YEANWLELQK
Sbjct: 438 LDEVHTIPAKMFRRVLTLVQAHCKLGLTATLVREDDKIADLNFLIGPKIYEANWLELQKA 497
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIA+V C+EVWCPM+PEFYREYL K +K+LLL+VMNPNK++ QYLI YHERR DK I
Sbjct: 498 GFIAKVACSEVWCPMTPEFYREYLTAKAAKKLLLFVMNPNKFQICQYLIQYHERRKDKII 557
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKH+A K+ KP+I+GPTSQ+ER+QILQNFK NP VNTIFVSKVADTSFDLPE
Sbjct: 558 VFSDNVFALKHFAEKLRKPFIFGPTSQAERMQILQNFKYNPMVNTIFVSKVADTSFDLPE 617
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+HGGSRRQEAQRLGRILRAKKGA NAFFY+LVSQDTMEM +SRKRQRF
Sbjct: 618 ANVLIQISAHGGSRRQEAQRLGRILRAKKGAC----NAFFYSLVSQDTMEMHFSRKRQRF 673
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYSYKVITKL G++ E G+ Y ++ EQ +LL QV+ A E + E + G+ G +
Sbjct: 674 LVNQGYSYKVITKLEGLQTEEGILYRSKTEQLRLLSQVMQAGEDEV--EIIPGDSGAEAR 731
Query: 515 GFKRSGGTMASLSGADDA-VYHESRFSN---VKHPLFKKFRG 552
+R GG + LSGAD VY E R + +HPLFK+F+G
Sbjct: 732 TQRRLGG-IGGLSGADMGDVYAEVRKAKDQATRHPLFKRFKG 772
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 95/106 (89%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSL GVTACCTVRKR LVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKP+GC
Sbjct: 342 AGKSLTGVTACCTVRKRCLVLCNSGVSVEQWKAQFKMWSTADDSMICRFTSEAKDKPVGC 401
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GI +TTY+MI+HTQKRSWE +Q MQWL+ QEWGIMLLD+ + AK
Sbjct: 402 GICITTYAMITHTQKRSWEGEQVMQWLKEQEWGIMLLDEVHTIPAK 447
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 76/100 (76%), Gaps = 3/100 (3%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP+AAKK +E EDE+GAKDYR QM+LKPDH SRPLWV+ +GHIFLE+FSPVY
Sbjct: 43 DGVPIAAKKQLEDKSC---EDEYGAKDYRDQMILKPDHASRPLWVSADGHIFLEAFSPVY 99
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
+HAHDFLIAIAEPVCRPE IHE ++ V +Q+
Sbjct: 100 KHAHDFLIAIAEPVCRPEFIHEYKLTSYSLYAAVSVGLQT 139
>gi|268572763|ref|XP_002641406.1| Hypothetical protein CBG13269 [Caenorhabditis briggsae]
Length = 789
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/338 (68%), Positives = 280/338 (82%), Gaps = 3/338 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+ELQK
Sbjct: 453 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELQKA 512
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ FY YL + +++LLL VMNPNK+R Q+LI +HERR DK I
Sbjct: 513 GHIAKVQCAEVWCPMTSAFYSYYLRSQIARKLLLAVMNPNKFRICQFLIKFHERRNDKII 572
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++M KP++YG TSQ+ER++ILQNF+ NP+VNTIFVSKVADTSFDLPE
Sbjct: 573 VFSDNVFALKRYAIEMQKPFLYGETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPE 632
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+HGGSRRQEAQRLGRILRAKK + +++NAFFY+LVSQDT+EM YSRKRQRF
Sbjct: 633 ANVLIQISAHGGSRRQEAQRLGRILRAKKHS-TDQFNAFFYSLVSQDTVEMGYSRKRQRF 691
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKV+ +L GME+E + +T++ Q QLL QVLA S+ DA+EE + E+ +
Sbjct: 692 LVNQGYAYKVVNRLPGMEQE-DLKLATKESQLQLLSQVLATSDADAEEEDIKEELADGTI 750
Query: 515 GFKRSGGTMASLSGADDAVYH-ESRFSNVKHPLFKKFR 551
R TMAS+SG A YH +++ +HPLFK+FR
Sbjct: 751 RVARREATMASMSGGQGAQYHAKAKAITERHPLFKRFR 788
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 137 GVPVAAKKNVE-KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
VP AA N+ ++ ++V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSPVY
Sbjct: 36 AVPKAASHNLSGENSSSVMTDEFGAKDYRKDMPLKADFSARPLWVAPDGHIFLESFSPVY 95
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
+HA DFLIAI+EPVCRP+HIHE ++ V +Q+
Sbjct: 96 KHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQT 135
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL NS VSVEQW+ QFKLWST D + RFT EAKD
Sbjct: 351 AGKTLVGVTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSG 410
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM++++ +R+ +A++ M++++ QEWG++LLD+ + AK
Sbjct: 411 ADATKPVVC---ISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAK 462
>gi|390346293|ref|XP_794167.3| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like, partial [Strongylocentrotus purpuratus]
Length = 757
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/295 (79%), Positives = 265/295 (89%), Gaps = 1/295 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVLT VQ+HCKLGLTATL+REDDKIADLNFLIGPKLYEANW+ELQ +
Sbjct: 453 LDEVHTIPAKQFRRVLTQVQAHCKLGLTATLVREDDKIADLNFLIGPKLYEANWMELQNK 512
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEF+REYL +T +RLLLYVMNPNK+RA Q+L+ +HE+R DK I
Sbjct: 513 GFIARVQCAEVWCPMAPEFFREYLAIRTRRRLLLYVMNPNKFRACQFLVRFHEQRNDKVI 572
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+ M +PYIYGPTSQ ER+QILQNF+ NP V+TIF+SKV D SFDLPE
Sbjct: 573 VFSDNVFALKHYAIAMGRPYIYGPTSQGERMQILQNFQHNPAVSTIFISKVGDNSFDLPE 632
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKG+IAEEYNAFFYTLVSQDT EM YS KRQRF
Sbjct: 633 ANVLIQISSHGGSRRQEAQRLGRILRAKKGSIAEEYNAFFYTLVSQDTQEMFYSLKRQRF 692
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV 509
L+NQGYS+K ITKLAGME+E + YST+ EQ QLLQQVLAA++ DA+EE V G++
Sbjct: 693 LVNQGYSFKTITKLAGMEQE-NLKYSTKQEQQQLLQQVLAATDADAEEEIVPGDL 746
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/107 (71%), Positives = 94/107 (87%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTVRKR +VLC SGV+VEQW+ QF++WST DDSMICRFTS+AKDKPMGC
Sbjct: 357 AGKTLVGVTASCTVRKRCMVLCTSGVAVEQWRSQFRMWSTVDDSMICRFTSDAKDKPMGC 416
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I ++TYSM++H+ KRSWEADQ MQWLQ+QEWG+M+LD+ + AK+
Sbjct: 417 SICISTYSMVAHSTKRSWEADQVMQWLQSQEWGLMILDEVHTIPAKQ 463
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 138 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 197
+P A + VE D A EDEFGAKDYR QM LK DH SRPLW+AP+GHIFLESFSPVY+H
Sbjct: 37 IPKNASRQVE-DQEAGDEDEFGAKDYRGQMELKKDHGSRPLWLAPDGHIFLESFSPVYKH 95
Query: 198 AHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
AHDFLIAI+EPVCRPE+IHE ++ V +Q+
Sbjct: 96 AHDFLIAISEPVCRPENIHEYKLTAYSLYAAVSVGLQT 133
>gi|313230223|emb|CBY07927.1| unnamed protein product [Oikopleura dioica]
Length = 792
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/346 (65%), Positives = 272/346 (78%), Gaps = 9/346 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVLT++ +HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+EL
Sbjct: 447 LDEVHTIPAKQFRRVLTVISAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELWNN 506
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G++ARVQCAEVWCPMSPEFYREYL CKT KR+L+YVMNPNK+R ++L+ YHE R DK I
Sbjct: 507 GYLARVQCAEVWCPMSPEFYREYLNCKTRKRILIYVMNPNKFRTCEFLVRYHEARKDKII 566
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL YA KM P+I+GPT+Q ER++I+QNFK NP TIF+SKV D SFD+P+
Sbjct: 567 VFSDNVFALVEYAKKMGAPFIHGPTAQHERMKIIQNFKYNPAFPTIFISKVGDNSFDMPD 626
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQI+SHGGSRRQEAQRLGRILRAKKG+ E NA+FY+LVSQDT EM+YS KRQRF
Sbjct: 627 ANVLIQIASHGGSRRQEAQRLGRILRAKKGSNPNEVNAYFYSLVSQDTKEMAYSTKRQRF 686
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE----VG 510
L+NQGY++K+IT+L G++E+ + +STR+EQ LLQ+VLAA++ DADEE + E G
Sbjct: 687 LVNQGYAFKIITELPGLKEDMSLSFSTREEQQVLLQRVLAANDADADEESMPSEFHSNAG 746
Query: 511 GVSGGFKRSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKFR 551
G G R G +SGAD Y E+ S K H LF+ FR
Sbjct: 747 GKRGNIVRRAGGFGQMSGADSRHYTETAASKKKKREAQHALFRAFR 792
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP-MG 96
AGK+L GVTAC TVRKR ++LC SGV+VEQWK+QFK+WSTA D MICRFTS+AKDKP G
Sbjct: 350 AGKTLTGVTACTTVRKRCVILCTSGVAVEQWKNQFKMWSTATDDMICRFTSDAKDKPHAG 409
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I+++TYSM+ HT KRS+EA++ M WL++QEWG+++LD+ + AK+
Sbjct: 410 SSIVISTYSMMGHTMKRSYEAEKLMAWLRDQEWGMIVLDEVHTIPAKQ 457
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Query: 138 VPVAAKKNVE--KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
VP AA ++ +DD E+ G KD+R ++ LK DH+SRP++++P+GHIFLE+FSPVY
Sbjct: 31 VPKAASSHIGTIRDDGVPQEESSGPKDFRHRLALKADHQSRPIYISPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
+HA DFLI IAEP+CRPE++HE P ++ V
Sbjct: 91 QHARDFLIGIAEPICRPENVHEFKLTPYSLYAAV 124
>gi|308483808|ref|XP_003104105.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
gi|308258413|gb|EFP02366.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
Length = 797
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/352 (65%), Positives = 279/352 (79%), Gaps = 17/352 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+ELQK
Sbjct: 447 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELQKA 506
Query: 275 GFIARVQCAEVWCPMSPEFYREYLV--------------CKTSKRLLLYVMNPNKYRATQ 320
G IA+VQCAEVWCPM+ FY YL + +++LLL VMNPNK+R Q
Sbjct: 507 GHIAKVQCAEVWCPMTSAFYSYYLRFFIRYPLNLNIFFRSQIARKLLLAVMNPNKFRICQ 566
Query: 321 YLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTI 380
+LI +HERR DK IVFSDNVFALK YA++M KP++YG TSQ+ER++ILQNF+ NP+VNTI
Sbjct: 567 FLIKFHERRNDKIIVFSDNVFALKRYAIEMQKPFLYGETSQNERMKILQNFQYNPRVNTI 626
Query: 381 FVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440
FVSKVADTSFDLPEANVLIQIS+HGGSRRQEAQRLGRILRAKK + +++NAFFY+LVSQ
Sbjct: 627 FVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGRILRAKKHS-TDQFNAFFYSLVSQ 685
Query: 441 DTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA 500
DT+EM YSRKRQRFL+NQGY+YKV+ KL GME E + +T++ Q QLL QVLA S+ DA
Sbjct: 686 DTVEMGYSRKRQRFLVNQGYAYKVVNKLPGMESE-DLKLATKESQLQLLSQVLATSDADA 744
Query: 501 DEERVAGEVGGVSGGFKRSGGTMASLSGADDAVYH-ESRFSNVKHPLFKKFR 551
+EE + E+ + R TMAS+SG A YH +++ +HPLFK+FR
Sbjct: 745 EEEDIKEELADGTIRIARREATMASMSGGQGAQYHAKAKAITERHPLFKRFR 796
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 137 GVPVAAKKNVEKDD-AAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
VP AA N+ D+ ++V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSPVY
Sbjct: 36 AVPKAASHNLNADNTSSVMVDEFGAKDYRKDMPLKGDFTARPLWVAPDGHIFLESFSPVY 95
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
+HA DFLIAI+EPVCRP+HIHE ++ V +Q+
Sbjct: 96 KHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQT 135
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL NS VSVEQW+ QFKLWST D + RFT EAKD
Sbjct: 345 AGKTLVGVTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSG 404
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM++++ +R+ +A++ M++++ QEWG++LLD+ + AK
Sbjct: 405 ADATKPVVC---ISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAK 456
>gi|440907187|gb|ELR57360.1| TFIIH basal transcription factor complex helicase XPB subunit [Bos
grunniens mutus]
Length = 778
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 275/343 (80%), Gaps = 12/343 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 441 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 501 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 560
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV + F L
Sbjct: 561 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVKEVKFSLFA 620
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
++++Q+ + + ++L I +K +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 621 CDMILQVENP----KNFTKKLLDIF-SKFRMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 675
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 676 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 734
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 735 QVSRRFGTMSSMSGADDTVYMEYHSSRSKTSTKHVHPLFKRFR 777
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 345 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 404
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 405 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 450
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|17556358|ref|NP_499487.1| Protein Y66D12A.15 [Caenorhabditis elegans]
gi|15795210|emb|CAC70144.1| Protein Y66D12A.15 [Caenorhabditis elegans]
Length = 789
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/338 (68%), Positives = 279/338 (82%), Gaps = 3/338 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+ELQK
Sbjct: 453 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELQKA 512
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ FY YL + +++LLL VMNPNK+R Q+LI +HERR DK I
Sbjct: 513 GHIAKVQCAEVWCPMTSAFYSYYLRSQIARKLLLAVMNPNKFRICQFLIKFHERRNDKII 572
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++M KP++YG TSQ+ER++ILQNF+ NP+VNTIFVSKVADTSFDLPE
Sbjct: 573 VFSDNVFALKRYAIEMQKPFLYGETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPE 632
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+HGGSRRQEAQRLGRILRAKK + +++NAFFY+LVSQDT+EM YSRKRQRF
Sbjct: 633 ANVLIQISAHGGSRRQEAQRLGRILRAKKHS-TDQFNAFFYSLVSQDTVEMGYSRKRQRF 691
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGY+YKV+ L GME E + ++++ Q QLLQQVLA S+ DA+EE V E+ +
Sbjct: 692 LVNQGYAYKVVNNLPGMELE-DLKLASKESQLQLLQQVLATSDADAEEEDVKEELADGTI 750
Query: 515 GFKRSGGTMASLSGADDAVYH-ESRFSNVKHPLFKKFR 551
R TMAS+SG A YH +++ +HPLFK+FR
Sbjct: 751 RISRREATMASMSGGQGAQYHSKAKAIAERHPLFKRFR 788
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 137 GVPVAAKKNVEKDDAA-VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
VP AA N+ ++A+ V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSPVY
Sbjct: 34 SVPKAASHNLNGENASSVMTDEFGAKDYRKDMPLKGDFTARPLWVAPDGHIFLESFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
+HA DFLIAI+EPVCRP+HIHE ++ V +Q+
Sbjct: 94 KHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQT 133
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL NS VSVEQW+ QFKLWST D + RFT EAKD
Sbjct: 351 AGKTLVGVTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSG 410
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM++++ +R+ +A++ M++++ QEWG++LLD+ + AK
Sbjct: 411 ADATKPVVC---ISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAK 462
>gi|324505126|gb|ADY42208.1| TFIIH basal transcription factor complex helicase XPB subunit
[Ascaris suum]
Length = 798
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/344 (67%), Positives = 279/344 (81%), Gaps = 9/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIV++HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+ELQK
Sbjct: 456 LDEVHTIPAKMFRRVLTIVRAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELQKA 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPMS EFY YL + ++RLLL VMNPNK+R Q+LI +HERR DK I
Sbjct: 516 GHIAKVQCAEVWCPMSAEFYSYYLRAQIARRLLLAVMNPNKFRICQFLIKFHERRNDKII 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++MNKP++YG T Q+ER++ILQNF+ NPKVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKKYAIEMNKPFLYGETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+HGGSRRQEAQRLGRILRAKK + + +NAFFY+LVSQDT+EMSYSRKRQRF
Sbjct: 636 ANVLIQISAHGGSRRQEAQRLGRILRAKKNS-TDAFNAFFYSLVSQDTVEMSYSRKRQRF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV--GGV 512
L+NQGY+YKV+ +L GME+E + T++ Q LL QVLAAS+ DA+EE + E G
Sbjct: 695 LVNQGYAYKVVNRLPGMEKE-DLKLGTKEAQLNLLHQVLAASDADAEEEDIKEESFDGTR 753
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSNV----KHPLFKKFRG 552
R G+ +S SG++ Y + + S V +HPLF++FR
Sbjct: 754 ETKMMRKEGSFSSFSGSNSITYVQ-KSSKVRDEDRHPLFRRFRA 796
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 137 GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYR 196
VP AA N+E A D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFSPVY+
Sbjct: 48 SVPKAASHNLEGQTAVSRTDDFGAKDYRHEMKLKPDHASRPLWVAPDGHIFLESFSPVYK 107
Query: 197 HAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
HAHDFLIAI+EPVCRPE IHE ++ V +Q++
Sbjct: 108 HAHDFLIAISEPVCRPEFIHEYQLTAYSLYAAVSIGLQTN 147
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 80/115 (69%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL S VSVEQW+ QFKLWST D + RFT EA+D
Sbjct: 354 AGKTLVGVTAATTVNKRCLVLATSNVSVEQWRAQFKLWSTIRDDQLTRFTREARDPVPSG 413
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM+++T KR++ A++ M+++++ EWG++LLD+ + AK
Sbjct: 414 PNANKPVVC---ISTYSMVAYTGKRTYAAEEAMKYIESLEWGLLLLDEVHTIPAK 465
>gi|339233162|ref|XP_003381698.1| DNA excision repair protein haywire [Trichinella spiralis]
gi|316979455|gb|EFV62248.1| DNA excision repair protein haywire [Trichinella spiralis]
Length = 837
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 274/346 (79%), Gaps = 22/346 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIV SHCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQK+
Sbjct: 457 LDEVHTIPAKMFRRVLTIVHSHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKQ 516
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA VQCAEVWCP++ EFY YL K S +LLL VMNPNK+R Q+L+ YHERR DK I
Sbjct: 517 GYIAHVQCAEVWCPVTAEFYDYYLTSKISVKLLLAVMNPNKFRICQFLVKYHERRNDKII 576
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA+ M +P++YG TSQ+ER+QILQNF+ NP+VNTIFVSK
Sbjct: 577 VFSDNVFALKKYAIAMERPFLYGDTSQNERMQILQNFQFNPRVNTIFVSK---------- 626
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKK-GAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
ANVLIQIS+HGGSRRQEAQRLGRILRAK+ G+ ++++NAFFY+LVSQDT+EMSY R+RQR
Sbjct: 627 ANVLIQISAHGGSRRQEAQRLGRILRAKRGGSCSDQFNAFFYSLVSQDTLEMSYGRRRQR 686
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE-VGGV 512
FLINQGYSYKVIT L GME+E + YST++EQ LL QVL+AS+ DA+EE V + V V
Sbjct: 687 FLINQGYSYKVITNLVGMEQE-TLLYSTKEEQLGLLHQVLSASDADAEEEHVPEDGVDAV 745
Query: 513 S----GGFKRSGGTMASLSGADDAVYHES----RFSN-VKHPLFKK 549
+ F R G+M+S+SGA + Y S R SN +HPLFK
Sbjct: 746 AKPANSKFARKQGSMSSISGAQNQAYLHSDTSARTSNKERHPLFKN 791
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 85/112 (75%), Gaps = 6/112 (5%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGKSLVGVTACCTV KR L LCNS VSV+QW++QFK+WSTADDS I RFT E+ D P G
Sbjct: 355 AGKSLVGVTACCTVNKRCLCLCNSNVSVQQWRNQFKMWSTADDSKIVRFTRESGDHVPSG 414
Query: 97 CG-----ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSMI++ +RS+EA+Q MQ+++ QEWG++LLD+ + AK
Sbjct: 415 NRANAPVICISTYSMIAYQGRRSFEAEQMMQYIRQQEWGLILLDEVHTIPAK 466
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 75/109 (68%), Gaps = 6/109 (5%)
Query: 131 IMLLDD---GVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIF 187
I L++D VP A K + + V DEFGAKDYR QM LK DH+ RPLW+AP+GH+F
Sbjct: 38 IALVEDELAAVPDVASKKISE---TVHSDEFGAKDYRNQMPLKADHQFRPLWIAPDGHVF 94
Query: 188 LESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
LESFSPVY+HAHDFLIAIAEPVCRPE IHE ++ V +Q+
Sbjct: 95 LESFSPVYKHAHDFLIAIAEPVCRPEFIHEYQLTAYSLYAAVSVGLQTQ 143
>gi|4150989|emb|CAA76655.1| XPB protein [Geodia cydonium]
Length = 810
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/350 (63%), Positives = 272/350 (77%), Gaps = 19/350 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV TIPA FRR L +VQ+H KLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 460 LDEVQTIPADKFRRTLAVVQAHTKLGLTATLVREDDKIQDLNFLIGPKLYEANWMELQNN 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIA+VQCAEVWCPM+PEFY EYL KT ++ LLYVMNPNK+RA Q+L+ +HE+R DK I
Sbjct: 520 GFIAKVQCAEVWCPMTPEFYSEYLKIKTRRKKLLYVMNPNKFRACQFLMKHHEQRNDKII 579
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
+FSD VF+L+ YA ++NKP+I G T+Q ER+++LQNFK NP VNTI +SKV D SFDLP+
Sbjct: 580 IFSDVVFSLRTYAKRLNKPFIDGQTNQQERMKVLQNFKHNPLVNTILISKVGDNSFDLPD 639
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVL +IS+HGGSRRQEAQRLG ILRAKK +++EEYNAFFY+LVSQDT EM +S KRQRF
Sbjct: 640 ANVLWKISAHGGSRRQEAQRLGGILRAKKDSVSEEYNAFFYSLVSQDTEEMHFSTKRQRF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L+NQGYS+KV++KL G+E+E + +T+ EQ +LLQ+VL+AS+ DA+EE +G G G
Sbjct: 700 LVNQGYSFKVVSKL-GIEDEPSLSLATKKEQAELLQEVLSASDADAEEEGSSG--AGKQG 756
Query: 515 G----------------FKRSGGTMASLSGADDAVYHESRFSNVKHPLFK 548
G R G+MAS+SG DD VY E R S +HPLFK
Sbjct: 757 GSGMAGALLSSSSSGGGVSRRAGSMASMSGGDDMVYMEYRTSRPQHPLFK 806
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 86/108 (79%), Gaps = 1/108 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
AGK+LVGVTA CTVRKR LVLC S V+VEQW+ QFKLWST D+ ++CRFTS+AKDKP
Sbjct: 363 AGKTLVGVTAACTVRKRCLVLCTSAVAVEQWRSQFKLWSTIDERLVCRFTSDAKDKPSPN 422
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
+ ++TY+M+++TQKR+W++ Q M +LQ QEWG+M+LD+ + A K
Sbjct: 423 TAVAISTYAMVAYTQKRAWDSQQMMNFLQQQEWGLMILDEVQTIPADK 470
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 72/100 (72%), Gaps = 5/100 (5%)
Query: 138 VPVAAKKNVEKDDAAV--PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+P AA K+ D+AV P D+FGAKDY + LK DH SRP+WVAP+GHIFLE+FSPVY
Sbjct: 48 IPNAASKS---GDSAVIAPTDDFGAKDYTKILTLKVDHISRPIWVAPDGHIFLEAFSPVY 104
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
+HA DFLIAIAEP+CRP+HIHE ++ V +Q+
Sbjct: 105 KHARDFLIAIAEPICRPQHIHEFKLTAYSLYAAVSVGLQT 144
>gi|341890534|gb|EGT46469.1| hypothetical protein CAEBREN_17583 [Caenorhabditis brenneri]
Length = 797
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/354 (65%), Positives = 279/354 (78%), Gaps = 19/354 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+ELQK
Sbjct: 445 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELQKA 504
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ FY YL + +++LLL VMNPNK+R Q+LI +HERR DK I
Sbjct: 505 GHIAKVQCAEVWCPMTSAFYSYYLRSQIARKLLLAVMNPNKFRICQFLIKFHERRNDKII 564
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++M+KP++YG TSQ+ER++ILQNF+ NP+VNTIFVSKVADTSFDLPE
Sbjct: 565 VFSDNVFALKKYAIEMSKPFLYGETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPE 624
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+HGGSRRQEAQRLGRILRAKK + +++NAFFY+LVSQDT+EM YSRKRQRF
Sbjct: 625 ANVLIQISAHGGSRRQEAQRLGRILRAKKHS-TDQFNAFFYSLVSQDTVEMGYSRKRQRF 683
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV--------- 505
L+NQGY+YKV+ KL GME E + T++ Q QLL QVLA S+ DA+EE +
Sbjct: 684 LVNQGYAYKVVNKLPGMESE-DLKLGTKELQLQLLSQVLATSDADAEEEDIKVLLVVLYY 742
Query: 506 -------AGEVGGVSGGFKRSGGTMASLSGADDAVYH-ESRFSNVKHPLFKKFR 551
E+ + R TMAS+SG A YH +++ +HPLFK+FR
Sbjct: 743 ADYHYNFQEELADGTIRIARREATMASMSGGQGAQYHAKAKAITERHPLFKRFR 796
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 135 DDGVPVAAKKNVEKDDAAVPE-DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 193
D VP AA N+ ++A DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSP
Sbjct: 32 DAAVPKAASHNLNGENAPPATFDEFGAKDYRKDMPLKADFSARPLWVAPDGHIFLESFSP 91
Query: 194 VYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
VY+HA DFLIAI+EPVCRP+HIHE ++ V +Q+
Sbjct: 92 VYKHARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQT 133
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL NS VSVEQW+ QFKLWST D + RFT EAKD
Sbjct: 343 AGKTLVGVTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSG 402
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM++++ +R+ +A++ M++++ QEWG++LLD+ + AK
Sbjct: 403 ADASKPVVC---ISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAK 454
>gi|320167881|gb|EFW44780.1| DNA repair helicase RAD25 [Capsaspora owczarzaki ATCC 30864]
Length = 739
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 265/347 (76%), Gaps = 15/347 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VL V +HCKLGLTATL+REDDKI DLNFLIGPKLYEANW++LQKR
Sbjct: 380 LDEVHVVPADMFRKVLMTVSAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKR 439
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARV CAEVWCPMSPEFY+ YL +T KR LL MNP K++ Q+LI YHE+RGDK I
Sbjct: 440 GFIARVSCAEVWCPMSPEFYKVYLETRTRKRQLLECMNPLKFQTCQFLIRYHEKRGDKII 499
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA KM KP+IYG T Q+ER+++LQ+F+ N ++TIF+SKV D SFDLPE
Sbjct: 500 VFSDNVFALKVYATKMGKPFIYGQTGQTERMRVLQHFQHNAGLSTIFISKVGDNSFDLPE 559
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+H GSRRQEAQRLGRILRAKKG++AEEYNAFFY+LVSQDT EM YS KRQ+F
Sbjct: 560 ANVLIQISAHYGSRRQEAQRLGRILRAKKGSLAEEYNAFFYSLVSQDTSEMYYSGKRQQF 619
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE------ 508
L++QGY++KVITKL GME+ + Y ++ +Q LL V+ A++ DA++E++ G+
Sbjct: 620 LVDQGYTFKVITKLEGMEDIPDLAYRSKTDQLDLLTTVIQANDADAEDEKLGGDDLLTGG 679
Query: 509 ----VGGVSGGFKRSG-----GTMASLSGADDAVYHESRFSNVKHPL 546
G SG R G+M SLSGAD Y E+ + K L
Sbjct: 680 EARSAAGASGKKSRKAATRRIGSMQSLSGADGMAYMETSVAKKKPRL 726
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 79/99 (79%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTV+KR LVLC SGV+VEQW Q+++WST I RFTS++KD P C
Sbjct: 284 AGKTLVGVTATCTVKKRTLVLCTSGVAVEQWARQYQMWSTIHPDRIARFTSDSKDPPQDC 343
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSM++ + KRS E++ MQ++QN EWG+++LD+
Sbjct: 344 GIVISTYSMVAFSGKRSAESEVIMQFMQNTEWGLVVLDE 382
>gi|320164128|gb|EFW41027.1| transcription factor IIH subunit [Capsaspora owczarzaki ATCC 30864]
Length = 892
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/344 (62%), Positives = 264/344 (76%), Gaps = 15/344 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VL V +HCKLGLTATL+REDDKI DLNFLIGPKLYEANW++LQKR
Sbjct: 533 LDEVHVVPADMFRKVLMTVSAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKR 592
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARV CAEVWCPMSPEFY+ YL +T KR LL MNP K++ Q+LI YHE+RGDK I
Sbjct: 593 GFIARVSCAEVWCPMSPEFYKVYLETRTRKRQLLECMNPLKFQTCQFLIRYHEKRGDKII 652
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA KM KP+IYG T Q+ER+++LQ+F+ N ++TIF+SKV D SFDLPE
Sbjct: 653 VFSDNVFALKVYATKMGKPFIYGQTGQTERMRVLQHFQHNAGLSTIFISKVGDNSFDLPE 712
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+H GSRRQEAQRLGRILRAKKG++AEEYNAFFY+LVSQDT EM YS KRQ+F
Sbjct: 713 ANVLIQISAHYGSRRQEAQRLGRILRAKKGSLAEEYNAFFYSLVSQDTSEMYYSGKRQQF 772
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE------ 508
L++QGY++KVITKL GME+ + Y ++ +Q LL V+ A++ DA++E++ G+
Sbjct: 773 LVDQGYTFKVITKLEGMEDIPDLAYRSKTDQLDLLTTVIQANDADAEDEKLGGDDLLTGG 832
Query: 509 ----VGGVSGGFKRSG-----GTMASLSGADDAVYHESRFSNVK 543
G SG R G+M SLSGAD Y E+ + K
Sbjct: 833 EARSAAGASGKKSRKAATRRIGSMQSLSGADGMAYMETSVAKKK 876
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 79/99 (79%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTV+KR LVLC SGV+VEQW Q+++WST I RFTS++KD P C
Sbjct: 437 AGKTLVGVTATCTVKKRTLVLCTSGVAVEQWARQYQMWSTIHPDRIARFTSDSKDPPQDC 496
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSM++ + KRS E++ MQ++QN EWG+++LD+
Sbjct: 497 GIVISTYSMVAFSGKRSAESEVIMQFMQNTEWGLVVLDE 535
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 65/107 (60%), Gaps = 15/107 (14%)
Query: 137 GVPVAAKK--NVEKDDAAVPE------DEFG------AKDYRAQMVLKPDHKSRPLWVAP 182
+P AA+K E DD A E D G A D+ + LKPDH SRPLWV+P
Sbjct: 54 ALPRAARKLDAAEVDDGANDELLHDKPDMHGTGGLTIAHDF-GTLPLKPDHMSRPLWVSP 112
Query: 183 NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
+GH+FLE+FSP+Y+ A DFLIAI+EPVCRP IHE P ++ V
Sbjct: 113 DGHLFLETFSPIYKLATDFLIAISEPVCRPHLIHEYRLTPYSLYAAV 159
>gi|444302187|pdb|4ERN|A Chain A, Crystal Structure Of The C-terminal Domain Of Human
Xpb/ercc-3 Excision Repair Protein At 1.80 A
Length = 289
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/289 (73%), Positives = 244/289 (84%), Gaps = 7/289 (2%)
Query: 269 LELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHER 328
+ELQ G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HER
Sbjct: 1 MELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHER 60
Query: 329 RGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADT 388
R DK IVF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DT
Sbjct: 61 RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDT 120
Query: 389 SFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS 448
SFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS
Sbjct: 121 SFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYS 180
Query: 449 RKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE 508
KRQRFL++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 181 TKRQRFLVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGE 239
Query: 509 VGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
G S R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 240 FGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 288
>gi|312066345|ref|XP_003136226.1| helicase [Loa loa]
gi|307768612|gb|EFO27846.1| helicase [Loa loa]
Length = 798
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/343 (66%), Positives = 274/343 (79%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIV++HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+EL+K
Sbjct: 456 LDEVHTIPAKMFRRVLTIVRAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELEKA 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPMS EFY YL + +RLLL VMNPNK+R Q+LI YHERR DK I
Sbjct: 516 GQIAKVQCAEVWCPMSAEFYSYYLRAQIGRRLLLAVMNPNKFRICQFLIMYHERRNDKII 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++M+KP++YG T Q+ER++ILQNF+ NPKVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKKYAIEMDKPFLYGETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+ GGSRRQEAQRLGRILRAKK + + +NAFFY+LVSQDT+EMSYSRKRQRF
Sbjct: 636 ANVLIQISAQGGSRRQEAQRLGRILRAKKNS-GDGFNAFFYSLVSQDTVEMSYSRKRQRF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE-VGGVS 513
L+NQGY+YKV+ +L GME+E + +T++ Q QLLQQVLAAS+ DA+EE + E V G
Sbjct: 695 LVNQGYAYKVVNRLPGMEKE-TLKLATKESQLQLLQQVLAASDADAEEEDIKEESVDGSR 753
Query: 514 GGFKRSGGTMASLSGADDAVYHESRFSNVK----HPLFKKFRG 552
S +++ + + VK HPLF++FR
Sbjct: 754 EAKAMRKEGSFSSFSGSNSISYTQKTRTVKDEDRHPLFRRFRA 796
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 72/101 (71%)
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
D VP AA N+E D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFSPV
Sbjct: 42 DATVPKAASHNLEGQTMITRTDDFGAKDYRHEMKLKPDHVSRPLWVAPDGHIFLESFSPV 101
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
Y+HAHDFLIAIAEPVCRPE IHE ++ V +Q+
Sbjct: 102 YKHAHDFLIAIAEPVCRPEFIHEYQLTAYSLYAAVSIGLQT 142
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL S VSVEQW+ QFKLWST D + RFT EA+D
Sbjct: 354 AGKTLVGVTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSG 413
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM+++T KR++ A++ M++++++EWG++LLD+ + AK
Sbjct: 414 SNANKPIVC---ISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAK 465
>gi|402594523|gb|EJW88449.1| DNA excision repair protein haywire [Wuchereria bancrofti]
Length = 781
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/343 (66%), Positives = 274/343 (79%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIV++HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+EL+K
Sbjct: 439 LDEVHTIPAKMFRRVLTIVRAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELEKA 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPMS EFY YL + +RLLL VMNPNK+R Q+LI YHE+R DK I
Sbjct: 499 GQIAKVQCAEVWCPMSAEFYSYYLRAQIGRRLLLAVMNPNKFRICQFLIKYHEQRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++M+KP++YG T Q+ER++ILQNF+ NPKVNTIFVSKVADTSFDLPE
Sbjct: 559 VFSDNVFALKKYAIEMDKPFLYGETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+ GGSRRQEAQRLGRILRAKK + + +NAFFY+LVSQDT+EMSYSRKRQRF
Sbjct: 619 ANVLIQISAQGGSRRQEAQRLGRILRAKKNS-GDGFNAFFYSLVSQDTVEMSYSRKRQRF 677
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE-VGGVS 513
L+NQGY+YKV+ +L GME+E + +T++ Q QLLQQVLAAS+ DA+EE + E V G
Sbjct: 678 LVNQGYAYKVVNRLPGMEKE-TLKLATKESQLQLLQQVLAASDADAEEEDIKEENVDGSK 736
Query: 514 GGFKRSGGTMASLSGADDAVYHESRFSNVK----HPLFKKFRG 552
S +++ + + VK HPLF++FR
Sbjct: 737 ETKTTRKEGSFSSFSGSNSISYAQKTRTVKDEDRHPLFRRFRA 779
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 72/101 (71%)
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
D VP AA N+E D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFSPV
Sbjct: 42 DATVPKAASHNLEGQTMVTRTDDFGAKDYRHEMKLKPDHASRPLWVAPDGHIFLESFSPV 101
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
Y+HAHDFLIAI+EPVCRPE IHE ++ V +Q+
Sbjct: 102 YKHAHDFLIAISEPVCRPEFIHEYQLTAYSLYAAVSIGLQT 142
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL S VSVEQW+ QFKLWST D + RFT EA+D
Sbjct: 337 AGKTLVGVTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSG 396
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM+++T KR++ A++ M++++++EWG++LLD+ + AK
Sbjct: 397 SNANKPIVC---ISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAK 448
>gi|170581278|ref|XP_001895614.1| helicase [Brugia malayi]
gi|158597374|gb|EDP35540.1| helicase, putative [Brugia malayi]
Length = 798
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/343 (66%), Positives = 273/343 (79%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIV++HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+EL+K
Sbjct: 456 LDEVHTIPAKMFRRVLTIVRAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELEKA 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPMS EFY YL + +RLLL VMNPNK+R Q+LI YHE R DK I
Sbjct: 516 GQIAKVQCAEVWCPMSAEFYSYYLRAQIGRRLLLAVMNPNKFRICQFLIKYHEXRNDKII 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++M+KP++YG T Q+ER++ILQNF+ NPKVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKKYAIEMDKPFLYGETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+ GGSRRQEAQRLGRILRAKK + + +NAFFY+LVSQDT+EMSYSRKRQRF
Sbjct: 636 ANVLIQISAQGGSRRQEAQRLGRILRAKKNS-GDGFNAFFYSLVSQDTVEMSYSRKRQRF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE-VGGVS 513
L+NQGY+YKV+ +L GME+E + +T++ Q QLLQQVLAAS+ DA+EE + E V G
Sbjct: 695 LVNQGYAYKVVNRLPGMEKE-TLKLATKESQLQLLQQVLAASDADAEEEDIKEENVDGSK 753
Query: 514 GGFKRSGGTMASLSGADDAVYHESRFSNVK----HPLFKKFRG 552
S +++ + + VK HPLF++FR
Sbjct: 754 EMKTTRKEGSFSSFSGSNSISYTQKTRTVKDEDRHPLFRRFRA 796
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 72/101 (71%)
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
D VP AA N+E D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFSPV
Sbjct: 42 DTTVPKAASHNLEGQTTVTRTDDFGAKDYRHEMKLKPDHASRPLWVAPDGHIFLESFSPV 101
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
Y+HAHDFLIAI+EPVCRPE IHE ++ V +Q+
Sbjct: 102 YKHAHDFLIAISEPVCRPEFIHEYQLTAYSLYAAVSIGLQT 142
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL S VSVEQW+ QFKLWST D + RFT EA+D
Sbjct: 354 AGKTLVGVTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSG 413
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM+++T KR++ A++ M++++++EWG++LLD+ + AK
Sbjct: 414 SNANKPIVC---ISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAK 465
>gi|332814347|ref|XP_525907.3| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Pan troglodytes]
Length = 768
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/292 (71%), Positives = 244/292 (83%), Gaps = 8/292 (2%)
Query: 267 NWL-ELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAY 325
+WL + Q G+IA+VQC EVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +
Sbjct: 477 DWLSDEQNNGYIAKVQCVEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKF 536
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
HERR DK IVF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV
Sbjct: 537 HERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKV 596
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
DTSFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM
Sbjct: 597 GDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEM 656
Query: 446 SYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV 505
+YS KRQRFL++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE V
Sbjct: 657 AYSTKRQRFLVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVV 715
Query: 506 AGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
AGE G S R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 716 AGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 767
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 86/99 (86%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 359 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 418
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+
Sbjct: 419 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDE 457
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 51 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 108
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 109 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 148
>gi|256085925|ref|XP_002579160.1| rad25/xp-B DNA repair helicase [Schistosoma mansoni]
Length = 722
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/251 (80%), Positives = 225/251 (89%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLT+VQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANWLELQ+R
Sbjct: 468 LDEVHTIPAKMFRRVLTLVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWLELQQR 527
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCP++PEFYREYL K+ K+LLL MNPNK+R +YLI YHERR DK I
Sbjct: 528 GFIARVQCAEVWCPVTPEFYREYLNMKSMKKLLLTAMNPNKFRVCEYLIRYHERRNDKII 587
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
+FSDNVFALK+YA KM +P++YGPT Q+ER+QILQNF+ NP V IFVSKVAD SFDLPE
Sbjct: 588 IFSDNVFALKYYATKMGRPFLYGPTGQAERMQILQNFQHNPNVPAIFVSKVADNSFDLPE 647
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A VLIQIS+HGGSRRQEAQRLGRILRAK+G AE YNAFFY+LVSQDTMEM Y+ KRQRF
Sbjct: 648 ATVLIQISAHGGSRRQEAQRLGRILRAKRGMDAEAYNAFFYSLVSQDTMEMQYALKRQRF 707
Query: 455 LINQGYSYKVI 465
L+NQGYSYKVI
Sbjct: 708 LVNQGYSYKVI 718
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP-MG 96
AGK+LVGVTA CT+RK VLC SGV+VEQW+ QFKLWST +D I RFTS+AKD+P +
Sbjct: 371 AGKTLVGVTAACTIRKPTFVLCTSGVAVEQWRAQFKLWSTIEDGQILRFTSDAKDRPNIN 430
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSMI+H+ KRS+EAD+ M W+++QEWG+M+LD+ + AK
Sbjct: 431 SHICISTYSMIAHSAKRSYEADRMMNWIRSQEWGLMILDEVHTIPAK 477
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 57/83 (68%)
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
D + K E P+DEFGAKD R + L+ DH SRPLW+ P+GHIFLE+F+P+
Sbjct: 60 DSNIKKIMNKPTETTVVCTPKDEFGAKDMRNILKLRLDHPSRPLWIGPDGHIFLETFNPL 119
Query: 195 YRHAHDFLIAIAEPVCRPEHIHE 217
R A DFLIAI+EPVCRP HIHE
Sbjct: 120 ARQAQDFLIAISEPVCRPLHIHE 142
>gi|360044168|emb|CCD81715.1| putative rad25/xp-B DNA repair helicase [Schistosoma mansoni]
Length = 769
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/251 (80%), Positives = 225/251 (89%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLT+VQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANWLELQ+R
Sbjct: 468 LDEVHTIPAKMFRRVLTLVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWLELQQR 527
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCP++PEFYREYL K+ K+LLL MNPNK+R +YLI YHERR DK I
Sbjct: 528 GFIARVQCAEVWCPVTPEFYREYLNMKSMKKLLLTAMNPNKFRVCEYLIRYHERRNDKII 587
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
+FSDNVFALK+YA KM +P++YGPT Q+ER+QILQNF+ NP V IFVSKVAD SFDLPE
Sbjct: 588 IFSDNVFALKYYATKMGRPFLYGPTGQAERMQILQNFQHNPNVPAIFVSKVADNSFDLPE 647
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A VLIQIS+HGGSRRQEAQRLGRILRAK+G AE YNAFFY+LVSQDTMEM Y+ KRQRF
Sbjct: 648 ATVLIQISAHGGSRRQEAQRLGRILRAKRGMDAEAYNAFFYSLVSQDTMEMQYALKRQRF 707
Query: 455 LINQGYSYKVI 465
L+NQGYSYKVI
Sbjct: 708 LVNQGYSYKVI 718
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP-MG 96
AGK+LVGVTA CT+RK VLC SGV+VEQW+ QFKLWST +D I RFTS+AKD+P +
Sbjct: 371 AGKTLVGVTAACTIRKPTFVLCTSGVAVEQWRAQFKLWSTIEDGQILRFTSDAKDRPNIN 430
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSMI+H+ KRS+EAD+ M W+++QEWG+M+LD+ + AK
Sbjct: 431 SHICISTYSMIAHSAKRSYEADRMMNWIRSQEWGLMILDEVHTIPAK 477
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 57/83 (68%)
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
D + K E P+DEFGAKD R + L+ DH SRPLW+ P+GHIFLE+F+P+
Sbjct: 60 DSNIKKIMNKPTETTVVCTPKDEFGAKDMRNILKLRLDHPSRPLWIGPDGHIFLETFNPL 119
Query: 195 YRHAHDFLIAIAEPVCRPEHIHE 217
R A DFLIAI+EPVCRP HIHE
Sbjct: 120 ARQAQDFLIAISEPVCRPLHIHE 142
>gi|119498889|ref|XP_001266202.1| TFIIH complex helicase Ssl2, putative [Neosartorya fischeri NRRL
181]
gi|119414366|gb|EAW24305.1| TFIIH complex helicase Ssl2, putative [Neosartorya fischeri NRRL
181]
Length = 829
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/353 (59%), Positives = 262/353 (74%), Gaps = 18/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 462 LDEVHVVPASMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 521
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 522 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 581
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 582 VFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 641
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 642 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 700
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD---------EERV 505
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ ER
Sbjct: 701 LVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLFSERS 760
Query: 506 AGEVGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
G G GG KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 761 GGPKGRAKGGVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKAGHHPLFRKL 813
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 365 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAIFTSDNKEKFRRS 424
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 425 TGIIVSTYSMVSQTRARSHDAQKMMDWMQSREWGLMILDE 464
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLALKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 137
Query: 217 E 217
E
Sbjct: 138 E 138
>gi|384494451|gb|EIE84942.1| hypothetical protein RO3G_09652 [Rhizopus delemar RA 99-880]
Length = 831
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/368 (58%), Positives = 257/368 (69%), Gaps = 31/368 (8%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V+T + +H KLGLTATL+RED+KI DLNFLIGPKLYEANW++L R
Sbjct: 463 LDEVHVVPANMFRTVVTTIAAHAKLGLTATLVREDEKIDDLNFLIGPKLYEANWMDLASR 522
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFY+EYL + KR LLYVMNP K++A QYLI YHERRGDK I
Sbjct: 523 GHIANVQCAEVWCPMTPEFYKEYLYENSRKRTLLYVMNPKKFQACQYLIGYHERRGDKII 582
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL YA K+ KPYIYG T Q ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 583 VFSDNVYALIEYAKKLGKPYIYGGTGQQERMRILQNFQYNPAVNTIFLSKVGDTSIDLPE 642
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 643 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSRDTQEMFYSTKRQQF 701
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV--AGEVGGV 512
LI+QGY++KVIT L GM+ + + + T EQ LL+ VL ++TD EE + +VG +
Sbjct: 702 LIDQGYAFKVITNLEGMDSDPNIVFRTHQEQMDLLKAVLLTNDTDLGEEELINVDDVGRI 761
Query: 513 -----------SGGFKRSGGTMASLSGADDAVYHE-----------------SRFSNVKH 544
SG KR T +L+G D+ Y E S S H
Sbjct: 762 TDRKVAAKNRTSGLVKRQVTTSKTLAGGDNMAYIEYNRNAGGQFTSRGRGNSSAPSREHH 821
Query: 545 PLFKKFRG 552
PLFKK G
Sbjct: 822 PLFKKHMG 829
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 77/100 (77%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS+ ++ + FTS+ K+K G
Sbjct: 366 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFLQWSSVKENQVAVFTSDCKEKFSGA 425
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSM+++ +KRS++A + M++L+++EWG +LLD+
Sbjct: 426 SGIVISTYSMVANKRKRSYDAQKMMEFLESREWGFLLLDE 465
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +DY + LK D+ SRPLW++P +GHI LE FSP+ A DFL+AI+EPV RP HIH
Sbjct: 62 FGREDY-TNLPLKKDNASRPLWISPEDGHIILEGFSPIAEQAQDFLVAISEPVSRPAHIH 120
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 121 EYKLTPYSLYAAV 133
>gi|403218334|emb|CCK72825.1| hypothetical protein KNAG_0L02070 [Kazachstania naganishii CBS
8797]
Length = 851
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/351 (59%), Positives = 258/351 (73%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 495 LDEVHVVPAAMFRRVVSAIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 554
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 555 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 614
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 615 VFSDNVYALQQYALKLGKPFIYGSTPQQERMNILQNFQFNDQINTIFLSKVGDTSIDLPE 674
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 675 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQAF 733
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL------AASETDADEERVAGE 508
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL AA E D + G
Sbjct: 734 LVDQGYAFKVITHLHGMENLLNLAYASARERRELLQEVLLKNEEAAALEEGDDADNFVGR 793
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHES---RFSNVK--HPLFKKF 550
GG FK R +MA L+G +D Y E+ R +K HPL +K
Sbjct: 794 SGGALKRFKSKAVRGQASMAGLAGGEDMAYAETGPNRNKEIKEHHPLIRKI 844
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 398 AGKTLVGITAACTIKKSVIVLCTSAVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 457
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V
Sbjct: 458 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRV 509
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 115 FKSHDF-SYLRLRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 173
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 174 EYRITAYSLYAAV 186
>gi|70985010|ref|XP_748011.1| TFIIH complex helicase Ssl2 [Aspergillus fumigatus Af293]
gi|66845639|gb|EAL85973.1| TFIIH complex helicase Ssl2, putative [Aspergillus fumigatus Af293]
gi|159126065|gb|EDP51181.1| TFIIH complex helicase Ssl2, putative [Aspergillus fumigatus A1163]
Length = 830
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/353 (59%), Positives = 262/353 (74%), Gaps = 18/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 463 LDEVHVVPASMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 522
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 523 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 582
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 583 VFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 642
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 643 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 701
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD---------EERV 505
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ ER
Sbjct: 702 LVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLFSERS 761
Query: 506 AGEVGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
G G GG KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 762 GGPKGRAKGGVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKAGHHPLFRKL 814
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D I FTS+ K++
Sbjct: 366 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRS 425
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 426 TGIIVSTYSMVSQTRARSHDAQKMMDWMQSREWGLMILDE 465
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 80 FGYKDF-SSLALKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 138
Query: 217 E 217
E
Sbjct: 139 E 139
>gi|403412105|emb|CCL98805.1| predicted protein [Fibroporia radiculosa]
Length = 860
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/359 (59%), Positives = 264/359 (73%), Gaps = 25/359 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 489 LDEVHVVPAAMFRKVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 548
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 549 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPRKFQACQFLIKYHEDRGDKII 608
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ KPYI+G T Q ER++ILQ F+ +P V TIF+SKV DTS DLPE
Sbjct: 609 VFSDNVFALEAYAKKLKKPYIHGGTGQVERMRILQWFQHSPDVQTIFLSKVGDTSIDLPE 668
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 669 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 727
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+E G+ Y TRDEQ +LL VL ASE +AD E +A
Sbjct: 728 LIDQGYAFKVITHLDGLETLGGLVYKTRDEQIELLSSVLLASEHEADPGTDVRAGEGDLA 787
Query: 507 GEVG----GVSG---GFKRSGGTMASLSGADDAVYHE---------SRFSNVKHPLFKK 549
G + GV G G +R+GG++ +LSG Y E +R + +H LF K
Sbjct: 788 GTITSKDFGVPGKMPGVQRTGGSLTALSGGQHMSYVEQNKSANKKLAREAAPRHKLFAK 846
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D + FT++ K+K G
Sbjct: 392 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNITDRQVAVFTADQKEKFAGD 451
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+++TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 452 SGIVISTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRKV 503
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHE ++
Sbjct: 104 LKPDHSSRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 163
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 164 AVSVGLQT 171
>gi|169776451|ref|XP_001822692.1| DNA repair helicase ercc3 [Aspergillus oryzae RIB40]
gi|83771427|dbj|BAE61559.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 824
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/352 (59%), Positives = 263/352 (74%), Gaps = 17/352 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 457 LDEVHVVPASMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 516
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 517 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 576
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 577 VFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 636
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 637 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET AD E V ++
Sbjct: 696 LVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSADVEAVTDDLFSERS 755
Query: 510 GGV---SGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG G KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 756 GGPRAKKGAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKVGHHPLFRKI 807
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 360 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 419
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 420 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 459
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 130
Query: 217 E 217
E
Sbjct: 131 E 131
>gi|238503147|ref|XP_002382807.1| TFIIH complex helicase Ssl2, putative [Aspergillus flavus NRRL3357]
gi|220691617|gb|EED47965.1| TFIIH complex helicase Ssl2, putative [Aspergillus flavus NRRL3357]
gi|391870679|gb|EIT79856.1| RNA polymerase II transcription initiation [Aspergillus oryzae
3.042]
Length = 824
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/352 (59%), Positives = 263/352 (74%), Gaps = 17/352 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 457 LDEVHVVPASMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 516
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 517 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 576
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 577 VFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 636
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 637 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET AD E V ++
Sbjct: 696 LVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSADVEAVTDDLFSERS 755
Query: 510 GGV---SGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG G KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 756 GGPRAKKGAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKVGHHPLFRKI 807
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 360 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 419
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 420 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 459
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 130
Query: 217 E 217
E
Sbjct: 131 E 131
>gi|353237278|emb|CCA69255.1| probable SSL2-DNA helicase [Piriformospora indica DSM 11827]
Length = 837
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/335 (60%), Positives = 256/335 (76%), Gaps = 13/335 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+T +++H KLGLTATL+REDDK+ DLN++IGPKLYEANW++L K+
Sbjct: 465 LDEVHVVPANMFRKVVTTIKAHSKLGLTATLVREDDKVVDLNYMIGPKLYEANWMDLAKK 524
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY EYL T KR+LLY MNP K++A Q+LI YHERRGDK I
Sbjct: 525 GHIANVQCAEVWCPMTSEFYAEYLKQDTRKRMLLYCMNPEKFQACQFLIDYHERRGDKII 584
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA ++NK YI+G T Q ER+++LQ+F+ NP NTIF+SKV DTS DLPE
Sbjct: 585 VFSDNVYALQAYAKRLNKMYIHGGTPQVERMRVLQHFQNNPLTNTIFLSKVGDTSIDLPE 644
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 645 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQQF 703
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGYS+KVIT+L GM+ + Y T+DEQ +L+Q+VL A ++DAD E+ +A
Sbjct: 704 LIDQGYSFKVITELDGMKSMPNLVYKTKDEQIELMQEVLTAKDSDADLGADVHGGEDDLA 763
Query: 507 GEVG----GVSGGFKRSGGTMASLSGADDAVYHES 537
G V G GG KR+ ++A +SG Y E+
Sbjct: 764 GTVTSKHFGFPGGAKRTTASLAGVSGGSHMSYRET 798
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 14/104 (13%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSM----ICRFTSEAKDK 93
AGK+LVG+TA CT++K LVLC S + +ST + I FT++ K+K
Sbjct: 373 AGKTLVGITAACTIKKSCLVLCTSS---------YVFFSTRSRVLTRIQISVFTADQKEK 423
Query: 94 PMG-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G GI+++TY MI++T RS E+ + M +L QEWG +LLD+
Sbjct: 424 FSGDSGIVISTYHMIANTHNRSHESKKMMDFLTGQEWGFLLLDE 467
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 155 EDEFGAKDYR-----AQMVLKPDHKSRPLWVAPNGH-IFLESFSPVYRHAHDFLIAIAEP 208
+D A+ +R + + LK DH +RPLW+ P+ + LE+FSP+ A DFL+AI+EP
Sbjct: 93 QDHLVARMFRERQDWSNLKLKNDHAARPLWINPDDRTLILEAFSPIAEQAQDFLVAISEP 152
Query: 209 VCRPEHIHE 217
V RPE IHE
Sbjct: 153 VSRPEFIHE 161
>gi|448508504|ref|XP_003865944.1| hypothetical protein CORT_0A01110 [Candida orthopsilosis Co 90-125]
gi|380350282|emb|CCG20503.1| hypothetical protein CORT_0A01110 [Candida orthopsilosis Co 90-125]
Length = 848
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/355 (59%), Positives = 264/355 (74%), Gaps = 21/355 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 478 LDEVHVVPANMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 537
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 538 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 597
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 598 VFSDNVYALQEYALKLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 657
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 658 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 716
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + Y++ E+ +LLQQVL +E DAD
Sbjct: 717 LVDQGYAFKVITHLSGMEQLPDLAYASARERRELLQQVLLKNEDAAGLEIGDDADTNFIP 776
Query: 502 -EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE-SRFSNVK----HPLFKKF 550
E+R E G SG RS G++A L+G +D Y E SR N + HPL +K
Sbjct: 777 REQRQRMENGKQSGA-TRSAGSLAGLAGGEDMAYIEYSRNKNKELDSHHPLIQKM 830
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 381 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASE 440
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+
Sbjct: 441 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDE 480
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 11/99 (11%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG+ D+ + + LKPDH +RPLW++PN I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 98 FGSSDF-SYLKLKPDHFTRPLWISPNDMRIILESFSPLAEQAQDFLITIAEPISRPSHIH 156
Query: 217 EVHTIPAKMF---------RRVLTIVQSHCKLGLTATLL 246
E P ++ +++++ K+ +T T++
Sbjct: 157 EYKITPFSLYAAVSVGLETNDIISVLNRLSKVPVTDTIV 195
>gi|350640166|gb|EHA28519.1| TFIIH basal transcription factor complex, subunit SSL2/RAD25
[Aspergillus niger ATCC 1015]
Length = 825
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/350 (59%), Positives = 263/350 (75%), Gaps = 15/350 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 461 LDEVHVVPASMFRKVTSAIACQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 520
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 521 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 580
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 581 VFSDNVYALQRYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 640
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 641 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 699
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ E V ++ G S
Sbjct: 700 LVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSAEVEHVTDDLFSGRS 759
Query: 514 GG-----FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 760 GGQRKGAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKVGHHPLFRKL 809
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 364 AGKTLVGITAGCTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 423
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 424 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 463
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
+FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+
Sbjct: 77 DFGYKDF-SSLSLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHL 135
Query: 216 HE 217
HE
Sbjct: 136 HE 137
>gi|358371648|dbj|GAA88255.1| TFIIH complex helicase Ssl2 [Aspergillus kawachii IFO 4308]
Length = 814
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/350 (59%), Positives = 263/350 (75%), Gaps = 15/350 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 450 LDEVHVVPASMFRKVTSAIACQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 509
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 510 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 569
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 570 VFSDNVYALQRYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 629
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 630 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 688
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ E V ++ G S
Sbjct: 689 LVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSAEVEHVTDDLFSGRS 748
Query: 514 GG-----FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 749 GGQRKGAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKVGHHPLFRKL 798
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 353 AGKTLVGITAGCTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 412
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 413 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 452
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 140 VAAKKNVEKDDAAVP--EDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYR 196
V K ++E AAV + +FG KD+ + + LKPDH +RPLW+ P G I LESFSP+
Sbjct: 47 VLEKFSLESKSAAVQRQDPDFGYKDF-SSLSLKPDHANRPLWIDPLKGTITLESFSPLAP 105
Query: 197 HAHDFLIAIAEPVCRPEHIHE 217
A DFL IAEP+ RP H+HE
Sbjct: 106 QAQDFLTTIAEPLSRPTHLHE 126
>gi|145242602|ref|XP_001393874.1| DNA repair helicase ercc3 [Aspergillus niger CBS 513.88]
gi|134078426|emb|CAL00841.1| unnamed protein product [Aspergillus niger]
Length = 818
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/350 (59%), Positives = 263/350 (75%), Gaps = 15/350 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 454 LDEVHVVPASMFRKVTSAIACQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 513
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 514 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 573
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 574 VFSDNVYALQRYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 633
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 634 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 692
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ E V ++ G S
Sbjct: 693 LVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSAEVEHVTDDLFSGRS 752
Query: 514 GG-----FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 753 GGQRKGAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKVGHHPLFRKL 802
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 357 AGKTLVGITAGCTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 416
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 417 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 456
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
+FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+
Sbjct: 70 DFGYKDF-SSLSLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHL 128
Query: 216 HE 217
HE
Sbjct: 129 HE 130
>gi|425772494|gb|EKV10895.1| hypothetical protein PDIG_53830 [Penicillium digitatum PHI26]
gi|425774926|gb|EKV13217.1| hypothetical protein PDIP_49050 [Penicillium digitatum Pd1]
Length = 822
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/353 (58%), Positives = 263/353 (74%), Gaps = 18/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL +
Sbjct: 456 LDEVHVVPASMFRKVTSAIAAQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAAQ 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EYL + K+ LLY+MNP K++A Q+LI +HE+RGDK I
Sbjct: 516 GHIAKVQCAEVWCPMTTEFYSEYLRESSRKQALLYIMNPRKFQACQFLIDFHEKRGDKII 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 576 VFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 636 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTNEMVYSAKRQAF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-- 512
LI+QGY++KVIT L G++ G+ Y+T E+ +LLQ+V+ +E+ AD E+V ++ +
Sbjct: 695 LIDQGYAFKVITHLQGIDNYEGLSYATPAERRELLQEVMLQNESSADVEQVNDDLFSMRS 754
Query: 513 -------SGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G DD Y E SR +K HPLFKK
Sbjct: 755 GKRVTTKKGGAKRSAATLSGLAGGDDMAYIEYNKSRNKQLKDKAGHHPLFKKM 807
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA T++K +VLC S +SV QW+++F W+T D I FTS+ K+K
Sbjct: 359 AGKTLVGITAAATIKKGTIVLCTSSMSVVQWRNEFLRWTTIDPGDIAIFTSDHKEKFKRS 418
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS++A + M WLQ++EWG+M+LD+
Sbjct: 419 TGIIVSTYSMVSQTRARSYDAQKMMDWLQSREWGMMILDE 458
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 142 AKKN-VEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAH 199
+KKN VEK D FG KD + + LK DH +RPLW+ P G I LESFSP+ A
Sbjct: 59 SKKNQVEKTDP-----RFGYKDL-SSLPLKRDHYNRPLWIEPLKGTITLESFSPLAPQAQ 112
Query: 200 DFLIAIAEPVCRPEHIHE 217
DFL IAEP+ RP H+HE
Sbjct: 113 DFLTTIAEPLSRPTHLHE 130
>gi|409048592|gb|EKM58070.1| hypothetical protein PHACADRAFT_252066 [Phanerochaete carnosa
HHB-10118-sp]
Length = 835
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/359 (59%), Positives = 267/359 (74%), Gaps = 25/359 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 462 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 521
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 522 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPKKFQACQFLIKYHEDRGDKII 581
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ K YI+G T Q ER++ILQ+F+ +P+VNTIF+SKV DTS DLPE
Sbjct: 582 VFSDNVYALEAYAKKLGKLYIHGGTGQVERMRILQHFQHSPEVNTIFLSKVGDTSIDLPE 641
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 642 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 700
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L GME+ + Y TRDEQ +LL VL A+E++AD E +A
Sbjct: 701 LIDQGYAFKVITHLDGMEDMSDLVYKTRDEQIELLSSVLMANESEADLGTDVRANEGDLA 760
Query: 507 GEVG----GVSGGF---KRSGGTMASLSGADDAVYHE---------SRFSNVKHPLFKK 549
G + G+ G F +R+ G++A+LSG Y E +R + +H LF K
Sbjct: 761 GTITSKDFGMPGKFPAVQRTTGSLAALSGGQHMSYVEQNKSANKKLAREAAPRHKLFAK 819
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D I FT++ K+K G
Sbjct: 365 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFMQWSNITDRQIAVFTADQKEKFAGE 424
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M +L ++EWG +LLD+ VP A + V
Sbjct: 425 SGIVVSTYSMVANTHNRSHESKKMMDFLTSREWGFILLDEVHVVPAAMFRRV 476
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LK DH SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHE ++
Sbjct: 80 LKSDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 139
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 140 AVSVGLQT 147
>gi|254566415|ref|XP_002490318.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Komagataella pastoris GS115]
gi|238030114|emb|CAY68037.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Komagataella pastoris GS115]
gi|328350713|emb|CCA37113.1| DNA excision repair protein ERCC-3 [Komagataella pastoris CBS 7435]
Length = 820
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/354 (59%), Positives = 259/354 (73%), Gaps = 19/354 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 462 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMDLAQK 521
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL + KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 522 GHIANVQCAEVWCPMTSEFYQEYLRETSRKRMLLYIMNPTKFQACQFLIHYHEQRGDKII 581
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N +VNTIF+SKV DTS DLPE
Sbjct: 582 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQVNTIFLSKVGDTSIDLPE 641
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 642 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 700
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA-------DEERVAG 507
L++QGY++KVIT L GME + YS+ E+ +LLQ VL +E A E + G
Sbjct: 701 LVDQGYAFKVITHLHGMESLPNLAYSSARERRELLQDVLLKNEDAAGIEAGEDSENMIGG 760
Query: 508 EV------GGVSGGFKRSGGTMASLSGADDAVYHE-SRFSNVK----HPLFKKF 550
V GG S R+ G++A L+G +D Y E SR N + HPL +K
Sbjct: 761 GVSKRVRSGGQSSSATRTTGSLAGLAGGEDMAYVEYSRNKNKELKEHHPLIQKM 814
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T + FTSE K+ G
Sbjct: 365 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTGD 424
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L ++EWG ++LD+ VP A + V AA
Sbjct: 425 AGLVVSTYSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAA 482
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 15/102 (14%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG+ D+ + + LKPDH SRP+W++PN G I LESFSP+ A DFL+ IAEP+ RP IH
Sbjct: 77 FGSSDF-SYLKLKPDHASRPIWISPNDGRIILESFSPLSEQAQDFLVTIAEPISRPSFIH 135
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
E ++ V + L DD I+ LN L
Sbjct: 136 EYRITAYSLYAAV-------------SVGLETDDIISVLNRL 164
>gi|149246257|ref|XP_001527598.1| DNA repair helicase RAD25 [Lodderomyces elongisporus NRRL YB-4239]
gi|146447552|gb|EDK41940.1| DNA repair helicase RAD25 [Lodderomyces elongisporus NRRL YB-4239]
Length = 890
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/356 (57%), Positives = 260/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 501 LDEVHVVPANMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 560
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 561 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 620
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+I+G T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 621 VFSDNVYALQEYALKLGKPFIFGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 680
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 681 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 739
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + Y++ E+ +LLQQVL +E D D
Sbjct: 740 LVDQGYAFKVITHLSGMEQLPDLAYASARERRELLQQVLLKNEDAAGLEIGDDVDTNFIS 799
Query: 502 -EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFKKF 550
E+R E +GG R+ G++A L+G +D Y E N HPL +K
Sbjct: 800 REQRQRYENSKQNGGASRTSGSLAGLAGGEDMAYIEYSKNKNKELRNSHHPLIQKM 855
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CTVRK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 404 AGKTLVGITAACTVRKSVIVLCTSSVSVMQWRQQFLQWCTIQPDNVAVFTSENKEMFASE 463
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+
Sbjct: 464 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDE 503
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LKPDH SRP+W++P+ I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 110 FGRADF-SYLKLKPDHFSRPIWISPSDLRIILESFSPLAEQAQDFLITIAEPISRPSHIH 168
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 169 EYRITAYSLYAAV 181
>gi|426337101|ref|XP_004032562.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Gorilla gorilla gorilla]
Length = 741
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/274 (72%), Positives = 231/274 (84%), Gaps = 7/274 (2%)
Query: 284 EVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFAL 343
+VWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK IVF+DNVFAL
Sbjct: 468 QVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFAL 527
Query: 344 KHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISS 403
K YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPEANVLIQISS
Sbjct: 528 KEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISS 587
Query: 404 HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYK 463
HGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRFL++QGYS+K
Sbjct: 588 HGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFK 647
Query: 464 VITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSGGFKRSGGTM 523
VITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S R GTM
Sbjct: 648 VITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTM 706
Query: 524 ASLSGADDAVYHESRFSNVK------HPLFKKFR 551
+S+SGADD VY E S K HPLFK+FR
Sbjct: 707 SSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 740
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 86/99 (86%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDE 442
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>gi|449543176|gb|EMD34153.1| hypothetical protein CERSUDRAFT_117644 [Ceriporiopsis subvermispora
B]
Length = 862
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/359 (59%), Positives = 266/359 (74%), Gaps = 25/359 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 487 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 547 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPRKFQACQFLIKYHEDRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+NK YI+G T Q ER++ILQ F+ +P VNTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVFALEAYAKKLNKLYIHGGTGQVERMRILQWFQHSPDVNTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 667 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+E R + Y +RDEQ +LL VL A+E++AD E +A
Sbjct: 726 LIDQGYAFKVITHLDGLEGLRDLVYQSRDEQIELLSSVLLANESEADLGTDVRAGEGDLA 785
Query: 507 GEVG----GVSG---GFKRSGGTMASLSGADDAVYHE---------SRFSNVKHPLFKK 549
G + G+ G G +R+ G++ +LSGA Y E +R + +H LF K
Sbjct: 786 GTITSKDFGLPGRFPGAQRTTGSLTALSGAQHMSYVEQNKSANKKLAREAAPRHKLFAK 844
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS + I FT++ K+K G
Sbjct: 390 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTERQIAVFTADQKEKFAGD 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 450 SGIVVSTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 501
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LK DH SRPLW++P+ GHI LE+FSP+ A DFLIAI+EPV RP IHE ++
Sbjct: 108 LKNDHGSRPLWISPDDGHIILENFSPIAEQAQDFLIAISEPVSRPTFIHEYKLTSYSLYA 167
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 168 AVSVGLQT 175
>gi|410078858|ref|XP_003957010.1| hypothetical protein KAFR_0D02280 [Kazachstania africana CBS 2517]
gi|372463595|emb|CCF57875.1| hypothetical protein KAFR_0D02280 [Kazachstania africana CBS 2517]
Length = 833
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 256/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 477 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 536
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 537 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIQYHEKRGDKII 596
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 597 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 656
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 657 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 715
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL------AASETDADEERVAGE 508
L++QGY++KVIT L GME + YS+ E+ +LLQ+VL A E D + G
Sbjct: 716 LVDQGYAFKVITHLHGMENLPNLAYSSARERRELLQEVLLKNEEAAGIEVGDDADNTIGR 775
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
V+ FK R G++A L+G +D Y E + K HPL +K
Sbjct: 776 GNNVNRRFKNKAVRGEGSLAGLAGGEDMAYMEYSTNKNKDLKEHHPLIRKM 826
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 380 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 439
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 440 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 497
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 13/94 (13%)
Query: 136 DGVPVAAKKN---VEKDDAAVPED--------EFGAKDYRAQMVLKPDHKSRPLWVAP-N 183
D V A K+ ++ ++ +PED F + D+ + + L+PDH SRP+W++P +
Sbjct: 71 DAVSKLAAKDQSFLQSGNSDIPEDFKPDTVSGMFRSHDF-SYLRLRPDHASRPIWISPSD 129
Query: 184 GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G I LESFSP+ A DFL+ IAEP+ RP HIHE
Sbjct: 130 GRIILESFSPLAEQAQDFLVTIAEPISRPSHIHE 163
>gi|225683607|gb|EEH21891.1| TFIIH basal transcription factor complex helicase XPB subunit
[Paracoccidioides brasiliensis Pb03]
Length = 787
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/356 (58%), Positives = 263/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 417 LDEVHVVPASMFRKVTSAIATQAKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELSEQ 476
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 477 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 536
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 537 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 596
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 597 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 655
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ G S
Sbjct: 656 LVDQGYAFKVITHLEGIENLEGLAYATPGERRELLQEVMLQNETSAVVEEVVDDLFSGRS 715
Query: 514 GG-----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 716 GGPKSRAAMNKAAVKRSAATLSGLAGGEDMAYVEHNKSRNKQLKEKVGHHPLFKKI 771
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 320 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFKRS 379
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M WLQ++EWG+MLLD+
Sbjct: 380 TGIIVSTYSMVSQTRARSHDAQKMMDWLQSREWGLMLLDE 419
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 34 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 92
Query: 217 E 217
E
Sbjct: 93 E 93
>gi|409078300|gb|EKM78663.1| hypothetical protein AGABI1DRAFT_121098 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 848
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/355 (59%), Positives = 265/355 (74%), Gaps = 21/355 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 478 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 537
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFY +YL ++ KR+LLY MNPNK++A Q+LI YHE RGDK I
Sbjct: 538 GHIANVQCAEVWCPMTPEFYGQYLREQSRKRMLLYCMNPNKFQACQFLIRYHEERGDKVI 597
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA ++NK YI+G T Q ER++IL +F+ +PKVNTIF+SKV DTS DLPE
Sbjct: 598 VFSDNVYALEAYARRLNKLYIHGGTGQVERMRILSHFQHSPKVNTIFLSKVGDTSIDLPE 657
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 658 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQQF 716
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+ E + Y TRDEQ +LLQ VL A+E++A+ E +A
Sbjct: 717 LIDQGYAFKVITHLDGLTEMPDLVYKTRDEQIELLQSVLLANESEAELGSDIRASEGDLA 776
Query: 507 GEVGGVSGG---FKRSGGTMASLSGADDAVYHE---------SRFSNVKHPLFKK 549
G V G F+R+ G++ +LSGA Y E +R + +H LF K
Sbjct: 777 GTVTSKDFGPTKFQRTTGSLNALSGAQHMSYIEQNKSANKKLAREAAPRHKLFAK 831
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D I FT++ K+K G
Sbjct: 381 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNITDRQIAVFTADQKEKFAGD 440
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 441 SGIVVSTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 492
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F +D+ + + LK DH SRP+W++P+ GHI LE+FSP+ A DFL AI+EPV RP IH
Sbjct: 94 FNEQDF-SWLHLKADHTSRPIWISPDDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIH 152
Query: 217 E 217
E
Sbjct: 153 E 153
>gi|401838864|gb|EJT42288.1| SSL2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 872
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/351 (59%), Positives = 256/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 516 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 575
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 576 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 635
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG TSQ ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 636 VFSDNVYALQEYALKMGKPFIYGSTSQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 695
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ + +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 696 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DQGFNAFFYSLVSKDTQEMYYSTKRQAF 754
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 755 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDAENSVGR 814
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G++A L+G +D Y E + K HPL +K
Sbjct: 815 GSNGHKRFKSKAVRGEGSLAGLAGGEDMAYMEYTTNKNKELKEHHPLIRKM 865
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 419 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 478
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 479 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 536
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++PN G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 142 FRSHDF-SYLRLRPDHASRPLWISPNDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 200
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKL 263
E ++ V +++ + + L + + +NF+ G +
Sbjct: 201 EYKITAYSLYAAVSVGLETEDIISVLDRLSKVPVAESIINFIKGATI 247
>gi|226287233|gb|EEH42746.1| DNA repair helicase RAD25 [Paracoccidioides brasiliensis Pb18]
Length = 833
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/356 (58%), Positives = 263/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 463 LDEVHVVPASMFRKVTSAIATQAKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELSEQ 522
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 523 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 582
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 583 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 642
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 643 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 701
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ G S
Sbjct: 702 LVDQGYAFKVITHLEGIENLEGLAYATPGERRELLQEVMLQNETSAVVEEVVDDLFSGRS 761
Query: 514 GG-----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 762 GGPKSRAAMNKAAVKRSAATLSGLAGGEDMAYVEHNKSRNKQLKEKVGHHPLFKKI 817
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 366 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFKRS 425
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M WLQ++EWG+MLLD+
Sbjct: 426 TGIIVSTYSMVSQTRARSHDAQKMMDWLQSREWGLMLLDE 465
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 80 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 138
Query: 217 E 217
E
Sbjct: 139 E 139
>gi|295667028|ref|XP_002794064.1| DNA repair helicase RAD25 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277717|gb|EEH33283.1| DNA repair helicase RAD25 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 832
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 263/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 462 LDEVHVVPASMFRKVTSAIATQAKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELSEQ 521
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 522 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 581
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 582 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 641
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 642 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 700
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ G S
Sbjct: 701 LVDQGYAFKVITHLEGIENLEGLAYATPGERRELLQEVMLQNETSAAVEEVVDDLFSGRS 760
Query: 514 GG-----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG +RS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 761 GGPKSRAATNKAAVRRSAATLSGLAGGEDMAYIEHNKSRNKQLKEKVGHHPLFKKI 816
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 365 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFKRS 424
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M WLQ++EWG+MLLD+
Sbjct: 425 TGIIVSTYSMVSQTRARSHDAQKMMDWLQSREWGLMLLDE 464
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 137
Query: 217 E 217
E
Sbjct: 138 E 138
>gi|354544829|emb|CCE41554.1| hypothetical protein CPAR2_801060 [Candida parapsilosis]
Length = 857
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/354 (58%), Positives = 259/354 (73%), Gaps = 19/354 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 478 LDEVHVVPANMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 537
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 538 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 597
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 598 VFSDNVYALQEYALKLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 657
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 658 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 716
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDADEERVA 506
L++QGY++KVIT L+GME+ + Y++ E+ +LLQQVL +E D D ++
Sbjct: 717 LVDQGYAFKVITHLSGMEQLPDLAYASARERRELLQQVLLKNEDAAGLEIGDDVDTNFIS 776
Query: 507 GEV-----GGVSGGFKRSGGTMASLSGADDAVYHE-SRFSN----VKHPLFKKF 550
E G RS G++A L+G +D Y E SR N HPL +K
Sbjct: 777 REQRQRMDNSKQSGATRSAGSLAGLAGGEDMAYIEYSRNKNKELGAHHPLIQKM 830
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 381 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPEKVAVFTSENKEMFASE 440
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+
Sbjct: 441 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDE 480
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 11/99 (11%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FGA D+ + + LKPDH +RPLW++PN I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 97 FGASDF-SYLKLKPDHFTRPLWISPNDMRIILESFSPLAEQAQDFLITIAEPISRPSHIH 155
Query: 217 EVHTIPAKMF---------RRVLTIVQSHCKLGLTATLL 246
E P ++ +++++ K+ +T T++
Sbjct: 156 EYKITPFSLYAAVSVGLETNDIISVLNRLSKVPVTDTIV 194
>gi|320583620|gb|EFW97833.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Ogataea parapolymorpha DL-1]
Length = 511
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/350 (59%), Positives = 256/350 (73%), Gaps = 19/350 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+RED+KI+DLNFLIGPKLYEANW+EL ++
Sbjct: 151 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDEKISDLNFLIGPKLYEANWMELSQK 210
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 211 GHIANVQCAEVWCPMTSEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 270
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N +VNTIF+SKV DTS DLPE
Sbjct: 271 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQVNTIFLSKVGDTSIDLPE 330
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 331 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 389
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL------AASETDADEERVAGE 508
L++QGY++K+IT L GME + YST E+ +LLQ+VL A E D E + G
Sbjct: 390 LVDQGYAFKIITHLHGMENLPNLAYSTAKERRELLQEVLLKNEDVAGIELGEDSENLVG- 448
Query: 509 VGGVSGGFKRSG------GTMASLSGADDAVYHESRFSNVK----HPLFK 548
GVS K + G++A L+G +D Y E S K HP F+
Sbjct: 449 -NGVSKKLKNTSKAVKNQGSLAGLAGGEDMAYVEYSKSKAKEVAHHPFFQ 497
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+ G
Sbjct: 54 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFSGD 113
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS++A + M +L ++EWG ++LD+ VP A + V AA
Sbjct: 114 AGLVVSTYSMVANTRNRSYDAQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAA 171
>gi|238879758|gb|EEQ43396.1| DNA repair helicase RAD25 [Candida albicans WO-1]
Length = 843
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/356 (58%), Positives = 260/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 480 LDEVHVVPAQMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 539
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 540 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 599
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+++ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 600 VFSDNVYALQEYALRLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 659
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 660 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 718
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + YS+ E+ +LLQQVL +E DAD
Sbjct: 719 LVDQGYAFKVITHLSGMEQLPDLAYSSARERRELLQQVLLKNEDAAGLEIGDDADTNFIS 778
Query: 502 -EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFKKF 550
E+R+ E GG S G++A L+G +D Y E HPL +K
Sbjct: 779 KEKRMRLEQERNGGGATYSSGSLAGLAGGEDMAYIEYGKNKNKELRESHHPLIQKM 834
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 383 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASE 442
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+ V A+
Sbjct: 443 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQ 489
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 63/124 (50%), Gaps = 27/124 (21%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPV 194
D +P A KN FG D+ + + LKPDH SRP+W++PN G I LESFSP+
Sbjct: 91 DYIPDAVSKN------------FGKGDF-SYLKLKPDHFSRPIWISPNDGRIILESFSPL 137
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIAD 254
A DFLI IAEP+ RP HIHE ++ V + L DD I+
Sbjct: 138 AEQAQDFLITIAEPISRPSHIHEYRITAYSLYAAV-------------SVGLETDDIISV 184
Query: 255 LNFL 258
LN L
Sbjct: 185 LNRL 188
>gi|68480483|ref|XP_715839.1| hypothetical protein CaO19.10376 [Candida albicans SC5314]
gi|68480588|ref|XP_715788.1| hypothetical protein CaO19.2857 [Candida albicans SC5314]
gi|46437427|gb|EAK96774.1| hypothetical protein CaO19.2857 [Candida albicans SC5314]
gi|46437480|gb|EAK96826.1| hypothetical protein CaO19.10376 [Candida albicans SC5314]
Length = 843
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/356 (58%), Positives = 260/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 480 LDEVHVVPAQMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 539
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 540 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 599
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+++ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 600 VFSDNVYALQEYALRLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 659
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 660 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 718
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + YS+ E+ +LLQQVL +E DAD
Sbjct: 719 LVDQGYAFKVITHLSGMEQLPDLAYSSARERRELLQQVLLKNEDAAGLEIGDDADTNFIS 778
Query: 502 -EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFKKF 550
E+R+ E GG S G++A L+G +D Y E HPL +K
Sbjct: 779 KEKRMRLEQERNGGGATYSSGSLAGLAGGEDMAYIEYGKNKNKELRESHHPLIQKM 834
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 383 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASE 442
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+ V A+
Sbjct: 443 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQ 489
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 14/83 (16%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPV 194
D +P A KN FG D+ + + LKPDH SRP+W++PN G I LESFSP+
Sbjct: 91 DYIPDAVSKN------------FGKGDF-SYLKLKPDHFSRPIWISPNDGRIILESFSPL 137
Query: 195 YRHAHDFLIAIAEPVCRPEHIHE 217
A DFLI IAEP+ RP HIHE
Sbjct: 138 AEQAQDFLITIAEPISRPSHIHE 160
>gi|255955729|ref|XP_002568617.1| Pc21g16090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590328|emb|CAP96506.1| Pc21g16090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 822
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/353 (58%), Positives = 261/353 (73%), Gaps = 18/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL +
Sbjct: 456 LDEVHVVPASMFRKVTSAIAAQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAAQ 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EYL + K+ LLY+MNP K++A Q+LI +HE+RGDK I
Sbjct: 516 GHIAKVQCAEVWCPMTTEFYSEYLRESSRKQALLYIMNPRKFQACQFLIDFHEKRGDKII 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 576 VFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 636 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTNEMVYSAKRQAF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE------ 508
LI+QGY++KVIT L G++ G+ Y+T E+ +LLQ+V+ +E+ AD E+V +
Sbjct: 695 LIDQGYAFKVITHLQGIDNYEGLSYATPAERRELLQEVMLQNESSADVEQVNDDLFSMRS 754
Query: 509 ---VGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
V G KRS T++ L+G DD Y E SR +K HPLFKK
Sbjct: 755 GKRVTAKKAGPKRSAATLSGLAGGDDMAYIEYNKSRNKQLKDKAGHHPLFKKM 807
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA T++K +VLC S +SV QW+++F W+T D I FTS+ K+K
Sbjct: 359 AGKTLVGITAAATIKKGTIVLCTSSMSVVQWRNEFLRWTTIDPGDIAIFTSDHKEKFKRS 418
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS++A + M WLQ++EWG+M+LD+
Sbjct: 419 TGIIVSTYSMVSQTRARSYDAQKMMDWLQSREWGMMILDE 458
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 143 KKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDF 201
K VEK D FG KD + + LK DH +RPLW+ P G I LESFSP+ A DF
Sbjct: 61 KNQVEKTDP-----RFGYKDL-SSLPLKRDHYNRPLWIEPLKGTITLESFSPLAPQAQDF 114
Query: 202 LIAIAEPVCRPEHIHE 217
L IAEP+ RP H+HE
Sbjct: 115 LTTIAEPLSRPTHLHE 130
>gi|294657393|ref|XP_459707.2| DEHA2E09174p [Debaryomyces hansenii CBS767]
gi|199432659|emb|CAG87943.2| DEHA2E09174p [Debaryomyces hansenii CBS767]
Length = 852
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/358 (58%), Positives = 262/358 (73%), Gaps = 25/358 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 490 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 549
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 550 GHIANVQCAEVWCPMTSEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 609
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG TSQ ER++ILQNF+ N +VNTIF+SKV DTS DLPE
Sbjct: 610 VFSDNVYALQGYALKLGKPFIYGSTSQQERMKILQNFQHNDQVNTIFLSKVGDTSIDLPE 669
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 670 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 728
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + YS+ E+ +LLQ+VL +E DAD
Sbjct: 729 LVDQGYAFKVITHLSGMEQLPDLAYSSARERRELLQEVLLKNEDAAGLEIGDDADTNFIP 788
Query: 502 ----EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
E+R E G S R+ G++A L+G +D Y E + K HPL +K
Sbjct: 789 REQREKRAKLESNGSSA--TRTAGSLAGLAGGEDMAYIEYNKNKNKEIKEHHPLIQKM 844
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 393 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTSD 452
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L ++EWG ++LD+ VP A + V
Sbjct: 453 AGLVVSTYSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRV 504
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 23/115 (20%)
Query: 153 VPED--------EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLI 203
+PED FG D+ + + LKPDH SRP+W++P + I LESFSP+ A DFLI
Sbjct: 93 IPEDYVPDAVSKAFGKSDF-SYLKLKPDHFSRPIWISPIDARIILESFSPLAEQAQDFLI 151
Query: 204 AIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
IAEP+ RP H+HE ++ V + L DD I+ LN L
Sbjct: 152 TIAEPISRPSHVHEYRITAYSLYAAV-------------SVGLETDDIISVLNRL 193
>gi|169859418|ref|XP_001836349.1| DNA helicase [Coprinopsis cinerea okayama7#130]
gi|116502638|gb|EAU85533.1| DNA helicase [Coprinopsis cinerea okayama7#130]
Length = 848
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 256/337 (75%), Gaps = 16/337 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 470 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 529
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNPNK++A Q+LI YHE RGDK I
Sbjct: 530 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPNKFQACQFLIRYHEGRGDKVI 589
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA + KPYI+G T Q ER++IL +F+ +P VNTIF+SKV DTS DLPE
Sbjct: 590 VFSDNVYALEAYAKHLGKPYIHGATGQVERMRILSHFQHSPLVNTIFLSKVGDTSIDLPE 649
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 650 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 708
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGYS+KVIT L G+E+ + Y T+DEQ +LL VL A+E++AD E +A
Sbjct: 709 LIDQGYSFKVITHLDGLEDLPDLAYRTKDEQIELLSSVLLANESEADLGSDVRASEGDLA 768
Query: 507 GEVGGVS-------GGFKRSGGTMASLSGADDAVYHE 536
G V + G +R+ G++ +LSGA Y E
Sbjct: 769 GTVTSLDFGGPGRFPGVQRTTGSLTALSGAQHMSYVE 805
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D I FT++ K+K G
Sbjct: 373 AGKTLVGITAACTIKKSTLVLCTSSVSVMQWRQQFIQWSNITDRQIAVFTADQKEKFAGE 432
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS ++ + M++L ++EWG +LLD+ VP A + V
Sbjct: 433 SGIVVSTYSMVANTHNRSHDSKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 484
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LKPDH SRPLW++P +GHI LE+FSP+ A DFL AI+EPV RP IHE
Sbjct: 101 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIHE 150
>gi|393217046|gb|EJD02536.1| DNA repair helicase rad25 [Fomitiporia mediterranea MF3/22]
Length = 872
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/346 (60%), Positives = 257/346 (74%), Gaps = 25/346 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKI DLN++IGPKLYEANW++L +
Sbjct: 483 LDEVHVVPAAMFRRVVTTIKAHAKLGLTATLVREDDKITDLNYMIGPKLYEANWMDLAAK 542
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL +T KR+LLY MNPNK +A Q+LI YHE RGDK I
Sbjct: 543 GHIANVQCAEVWCPMTPEFYREYLREQTRKRMLLYCMNPNKIQACQFLIKYHEDRGDKII 602
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+HYA K+ K YI+G TSQ ER+++LQ+F+ +PKVNTIF+SKV DTS DLPE
Sbjct: 603 VFSDNVYALEHYARKLGKLYIHGGTSQVERMRVLQHFQHHPKVNTIFLSKVGDTSIDLPE 662
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 663 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 721
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGYS+KVIT L G++ + Y TRDEQ +L+ VL A+E+DA+ E +
Sbjct: 722 LIDQGYSFKVITHLDGIQSLPDLAYRTRDEQIELISSVLLANESDAELGNDVRAGEGDLP 781
Query: 507 GEV-----------GGVSG-----GFKRSGGTMASLSGADDAVYHE 536
G V GG G G KR+ G++ +LSG Y E
Sbjct: 782 GTVTAKDFGGPGQRGGAFGASNVPGAKRTTGSLGALSGGAHMSYVE 827
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVL S VSV QWK QF WS + I FT++ K++ G
Sbjct: 386 AGKTLVGITAACTIKKSCLVLATSSVSVMQWKQQFMQWSNVTEKQIAVFTADQKERFAGD 445
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M++LQ +EWG +LLD+ VP A + V
Sbjct: 446 SGIVVSTYSMVANTHNRSHESKKMMEFLQGREWGFILLDEVHVVPAAMFRRV 497
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F +D+ + + LKPDH SRPLW++P +G+I LE FSP+ A DFL+AI+EPV RP IH
Sbjct: 94 FADQDF-SWLHLKPDHSSRPLWISPEDGYIILEGFSPIAEQAQDFLVAISEPVSRPAFIH 152
Query: 217 EVHTIPAKMFRRVLTIVQS 235
E ++ V +Q+
Sbjct: 153 EYKLTAYSLYAAVSVGLQT 171
>gi|426199291|gb|EKV49216.1| hypothetical protein AGABI2DRAFT_218349 [Agaricus bisporus var.
bisporus H97]
Length = 855
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/333 (61%), Positives = 257/333 (77%), Gaps = 12/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 485 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 544
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFY +YL ++ KR+LLY MNPNK++A Q+LI YHE RGDK I
Sbjct: 545 GHIANVQCAEVWCPMTPEFYGQYLREQSRKRMLLYCMNPNKFQACQFLIRYHEERGDKVI 604
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA ++NK YI+G T Q ER++IL +F+ +PKVNTIF+SKV DTS DLPE
Sbjct: 605 VFSDNVYALEAYARRLNKLYIHGGTGQVERMRILSHFQHSPKVNTIFLSKVGDTSIDLPE 664
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 665 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQQF 723
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+ E + Y TRDEQ +LLQ VL A+E++A+ E +A
Sbjct: 724 LIDQGYAFKVITHLDGLTEMPDLVYKTRDEQIELLQSVLLANESEAELGSDIRASEGDLA 783
Query: 507 GEVGGVSGG---FKRSGGTMASLSGADDAVYHE 536
G V G F+R+ G++ +LSGA Y E
Sbjct: 784 GTVTSKDFGPTKFQRTTGSLNALSGAQHMSYIE 816
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D I FT++ K+K G
Sbjct: 388 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNITDRQIAVFTADQKEKFAGD 447
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 448 SGIVVSTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 499
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F +D+ + + LK DH SRP+W++P+ GHI LE+FSP+ A DFL AI+EPV RP IH
Sbjct: 94 FNEQDF-SWLHLKADHTSRPIWISPDDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIH 152
Query: 217 E 217
E
Sbjct: 153 E 153
>gi|241958282|ref|XP_002421860.1| DNA repair helicase, putative [Candida dubliniensis CD36]
gi|223645205|emb|CAX39804.1| DNA repair helicase, putative [Candida dubliniensis CD36]
Length = 846
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/356 (57%), Positives = 260/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 483 LDEVHVVPAQMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 542
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 543 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 602
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+++ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 603 VFSDNVYALQEYALRLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 662
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 663 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 721
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + YS+ E+ +LLQQVL +E DAD
Sbjct: 722 LVDQGYAFKVITHLSGMEQLPDLAYSSARERRELLQQVLLKNEDAAGLEIGDDADTNFIS 781
Query: 502 -EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFKKF 550
E+R+ E GG + G++A L+G +D Y E HPL +K
Sbjct: 782 KEKRMRLEQERNGGGATYTSGSLAGLAGGEDMAYIEYGKNKNKELRESHHPLIQKM 837
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 386 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASE 445
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+ V A+
Sbjct: 446 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQ 492
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 63/124 (50%), Gaps = 27/124 (21%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPV 194
D +P A KN FG D+ + + LKPDH SRP+W++PN G I LESFSP+
Sbjct: 94 DYIPDAVSKN------------FGKGDF-SYLKLKPDHFSRPIWISPNDGRIILESFSPL 140
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIAD 254
A DFLI IAEP+ RP HIHE ++ V + L DD I+
Sbjct: 141 AEQAQDFLITIAEPISRPSHIHEYRITAYSLYAAV-------------SVGLETDDIISV 187
Query: 255 LNFL 258
LN L
Sbjct: 188 LNRL 191
>gi|344235728|gb|EGV91831.1| TFIIH basal transcription factor complex helicase XPB subunit
[Cricetulus griseus]
Length = 1183
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/300 (68%), Positives = 234/300 (78%), Gaps = 41/300 (13%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 915 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 974
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAE +HERR DK I
Sbjct: 975 GYIAKVQCAE----------------------------------------FHERRNDKII 994
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 995 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 1054
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHG SRRQEAQRLG RAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 1055 ANVLIQISSHGCSRRQEAQRLGGEHRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 1114
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 1115 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 1173
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 819 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 878
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 879 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 924
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 511 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKSDHASRPLWVAPDGHIFLEAFSPVY 568
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 569 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 608
>gi|156845686|ref|XP_001645733.1| hypothetical protein Kpol_1043p66 [Vanderwaltozyma polyspora DSM
70294]
gi|156116400|gb|EDO17875.1| hypothetical protein Kpol_1043p66 [Vanderwaltozyma polyspora DSM
70294]
Length = 856
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 256/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 500 LDEVHVVPAAMFRRVVTAIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 559
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ +FY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 560 GHIANVQCAEVWCPMTVDFYQEYLRENARKRMLLYIMNPTKFQACQFLIQYHEKRGDKII 619
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 620 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 679
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 680 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 738
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA------DEERVAGE 508
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A D E G
Sbjct: 739 LVDQGYAFKVITHLHGMELLPNLAYASGRERRELLQEVLLKNEEAAGIEIGDDAENTIGR 798
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
G FK R G++A L+G +D Y E + K HPL +K
Sbjct: 799 GGNAHKRFKSKAVRGEGSLAGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 849
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 403 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 462
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V
Sbjct: 463 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRV 514
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEPV RP HIH
Sbjct: 126 FKSHDF-SYLKLRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPVSRPSHIH 184
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 185 EYRITAYSLYAAV 197
>gi|259147110|emb|CAY80363.1| Ssl2p [Saccharomyces cerevisiae EC1118]
Length = 843
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 256/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GYIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT +M YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQDMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 785
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 786 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 836
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 E 217
E
Sbjct: 172 E 172
>gi|302684387|ref|XP_003031874.1| hypothetical protein SCHCODRAFT_68127 [Schizophyllum commune H4-8]
gi|300105567|gb|EFI96971.1| hypothetical protein SCHCODRAFT_68127 [Schizophyllum commune H4-8]
Length = 849
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/334 (60%), Positives = 254/334 (76%), Gaps = 13/334 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 480 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 539
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNPNK++A Q+LI +HE RGDK I
Sbjct: 540 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPNKFQACQFLIKFHEERGDKII 599
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA ++ K YI+G T Q ER++IL F+ NPKVNTIF+SKV DTS DLPE
Sbjct: 600 VFSDNVYALEAYAKRLGKLYIHGATGQVERMRILSQFQHNPKVNTIFLSKVGDTSIDLPE 659
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 660 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 718
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADE----ERVAGEVG 510
LI+QGY++KVIT L GM+ + Y TRDEQ +LL VL A+E +AD + V G++
Sbjct: 719 LIDQGYAFKVITHLDGMDALPDLVYRTRDEQIELLSSVLLATENEADVGSDIKAVEGDLA 778
Query: 511 GVSG--------GFKRSGGTMASLSGADDAVYHE 536
G G +R+ G++++LSG Y E
Sbjct: 779 GTVTSTVRTKWPGAQRTTGSLSALSGGQHMSYVE 812
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D I FT+E+K+K
Sbjct: 383 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNTTDKQIAVFTAESKEKFATE 442
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+++TYSM+++T RS ++ + M++L ++EWG +LLD+ VP A + V
Sbjct: 443 SGIIISTYSMVANTHNRSHDSKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 494
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH SRPLW+ P+ GHI LE FSP+ A DFL AI+EPV RPE +HE
Sbjct: 99 LKSDHASRPLWICPDDGHIILEHFSPIAEQAQDFLTAISEPVSRPEFVHE 148
>gi|255714519|ref|XP_002553541.1| KLTH0E01210p [Lachancea thermotolerans]
gi|238934923|emb|CAR23104.1| KLTH0E01210p [Lachancea thermotolerans CBS 6340]
Length = 839
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 257/351 (73%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 483 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 542
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 543 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIQYHEKRGDKII 602
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 603 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQFNDQINTIFLSKVGDTSIDLPE 662
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 663 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 721
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL------AASETDADEERVAGE 508
L++QGY++KVIT L GME + YST E+ +LLQ+VL A E D E G
Sbjct: 722 LVDQGYAFKVITHLHGMESLPNLTYSTARERRELLQEVLLKNEEAAGIEVGDDAENSVGR 781
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHE---SRFSNVK--HPLFKKF 550
+ K R G+++ L+G +D Y E +R ++K HP+ +K
Sbjct: 782 GAHANKKAKSKAVRGEGSLSGLAGGEDMAYVEYSSNRNKDLKEHHPMIRKL 832
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T + FTS+ K+
Sbjct: 386 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENVAVFTSDNKEMFQTE 445
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 446 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVTTIAA 503
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LKPDH SRPLW++P +G + LESFSP+ A DFL+ IAEPV RP HIHE
Sbjct: 120 LKPDHASRPLWISPGDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIHE 169
>gi|225557061|gb|EEH05348.1| DNA repair helicase RAD25 [Ajellomyces capsulatus G186AR]
Length = 833
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 262/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 463 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 522
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 523 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 582
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 583 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 642
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 643 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 701
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ S
Sbjct: 702 LVDQGYAFKVITHLEGIENLEGLAYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERS 761
Query: 514 GG-----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 762 GGPKARGAAKRVAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKEKVGHHPLFKKI 817
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 366 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRN 425
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 426 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 465
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 69 KKADIQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTI 127
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 128 AEPLSRPTHLHE 139
>gi|366995011|ref|XP_003677269.1| hypothetical protein NCAS_0G00290 [Naumovozyma castellii CBS 4309]
gi|342303138|emb|CCC70916.1| hypothetical protein NCAS_0G00290 [Naumovozyma castellii CBS 4309]
Length = 837
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/349 (58%), Positives = 256/349 (73%), Gaps = 14/349 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 483 LDEVHVVPAAMFRRVVSAIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 542
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 543 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 602
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 603 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 662
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 663 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 721
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E +G
Sbjct: 722 LVDQGYAFKVITHLHGMETLPNLAYASARERRELLQEVLLKNEEAAGLEVGDDADNTIGR 781
Query: 512 VSGGFKRS-----GGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
FKR+ G++A L+G +D Y E + K HPL +K
Sbjct: 782 GGNAFKRAKAVRGQGSLAGLAGGEDMAYMEYSTNKNKDLKEHHPLIRKM 830
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 386 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPESCAVFTSDNKEMFQTE 445
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V
Sbjct: 446 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRV 497
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 114 FRSHDF-SYLKLRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 172
Query: 217 E 217
E
Sbjct: 173 E 173
>gi|172327|gb|AAA34942.1| DNA helicase [Saccharomyces cerevisiae]
Length = 843
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/351 (58%), Positives = 255/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 785
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 786 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 836
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 E 217
E
Sbjct: 172 E 172
>gi|50309063|ref|XP_454537.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643672|emb|CAG99624.1| KLLA0E13025p [Kluyveromyces lactis]
Length = 858
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/354 (59%), Positives = 259/354 (73%), Gaps = 21/354 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 501 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 560
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 561 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIQYHEKRGDKII 620
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 621 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 680
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 681 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 739
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV-- 512
L++QGY++KVIT L GME + YS+ E+ +LLQ+VL +E A E AGE
Sbjct: 740 LVDQGYAFKVITHLHGMENLPNLAYSSARERRELLQEVLLKNEEAAGIE--AGEDNDSYI 797
Query: 513 --SGGFKR---------SGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
+GG KR S G++A L+G +D Y E + K HPL +K
Sbjct: 798 WKNGGNKRPRNKSKAVKSEGSLAGLAGGEDMAYLEYSSNKNKDLRDHHPLIRKM 851
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T + FTS+ K+
Sbjct: 404 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENVAVFTSDNKEMFQTE 463
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS+++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 464 SGLVVSTYSMVANTRNRSYDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 521
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F D+ + + LKPDH SRPLW++PN G + LESFSP+ A DFL+ IAEPV RP HIH
Sbjct: 131 FKTNDF-SYLKLKPDHASRPLWISPNDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIH 189
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 190 EYRITAYSLYAAV 202
>gi|151943023|gb|EDN61358.1| DNA helicase [Saccharomyces cerevisiae YJM789]
gi|256270224|gb|EEU05444.1| Ssl2p [Saccharomyces cerevisiae JAY291]
gi|349578814|dbj|GAA23978.1| K7_Ssl2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298773|gb|EIW09869.1| Ssl2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 843
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/351 (58%), Positives = 255/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 785
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 786 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 836
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 E 217
E
Sbjct: 172 E 172
>gi|6322048|ref|NP_012123.1| Ssl2p [Saccharomyces cerevisiae S288c]
gi|267033|sp|Q00578.1|RAD25_YEAST RecName: Full=DNA repair helicase RAD25; AltName: Full=General
transcription and DNA repair factor IIH subunit RAD25;
Short=TFIIH subunit RAD25; AltName: Full=Suppressor of
stem-loop mutation 2
gi|172724|gb|AAA35102.1| encodes human ERCC-3 homologue [Saccharomyces cerevisiae]
gi|557780|emb|CAA86135.1| DNA repair helicase [Saccharomyces cerevisiae]
gi|51013217|gb|AAT92902.1| YIL143C [Saccharomyces cerevisiae]
gi|285812511|tpg|DAA08410.1| TPA: Ssl2p [Saccharomyces cerevisiae S288c]
Length = 843
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/351 (58%), Positives = 255/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 785
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 786 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 836
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 E 217
E
Sbjct: 172 E 172
>gi|190406354|gb|EDV09621.1| DNA repair helicase RAD25 [Saccharomyces cerevisiae RM11-1a]
gi|323354539|gb|EGA86375.1| Ssl2p [Saccharomyces cerevisiae VL3]
Length = 843
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/351 (58%), Positives = 255/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 785
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 786 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 836
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 E 217
E
Sbjct: 172 E 172
>gi|388857563|emb|CCF48919.1| probable SSL2-DNA helicase [Ustilago hordei]
Length = 938
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/287 (67%), Positives = 238/287 (82%), Gaps = 1/287 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVLT +++H KLGLTATL+RED+KI +LNFL+GPKLYEANW++L +
Sbjct: 563 LDEVHVVPASMFRRVLTKIKAHSKLGLTATLVREDEKIDELNFLVGPKLYEANWMDLAAK 622
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL K+ K++LLY MNPNK++A Q+LI YHE RGDK I
Sbjct: 623 GHIATVQCAEVWCPMTPEFYREYLREKSRKKMLLYCMNPNKFQACQFLIDYHENRGDKII 682
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ KPYI+G T+ ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 683 VFSDNVFALEAYAIKLKKPYIHGGTAHVERMRILQNFQHNPLVNTIFLSKVGDTSIDLPE 742
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 743 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTAEMFYSTKRQQF 801
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD 501
LI+QGY+++VIT L GME G+ Y ++ EQ +LLQ VL A+E+DAD
Sbjct: 802 LIDQGYAFRVITHLVGMEHMPGLVYKSQAEQIELLQSVLIANESDAD 848
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D+ I FT++ K+K G
Sbjct: 466 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGA 525
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T KRS + + M +L+++EWG +LLD+
Sbjct: 526 SGIVVSTYSMVANTGKRSHTSQKMMNFLESREWGFILLDE 565
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 141 AAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAH 199
A ++ E+D E F +D+ +M LK DH SRPLW++P+ GHI LE FSP+ A
Sbjct: 124 AMDEDDEQDQYESGELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIILEGFSPLAEQAQ 182
Query: 200 DFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ 234
DFLIAIAEPV RP +IHE P ++ V +Q
Sbjct: 183 DFLIAIAEPVSRPAYIHEYKLTPYSLYAAVSVGLQ 217
>gi|444323403|ref|XP_004182342.1| hypothetical protein TBLA_0I01650 [Tetrapisispora blattae CBS 6284]
gi|387515389|emb|CCH62823.1| hypothetical protein TBLA_0I01650 [Tetrapisispora blattae CBS 6284]
Length = 850
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/351 (58%), Positives = 255/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 494 LDEVHVVPAAMFRRVVSAIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 553
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 554 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 613
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 614 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 673
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 674 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 732
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA------DEERVAGE 508
L++QGY++KVIT L GME + YS+ E+ +LLQ+VL +E A D + G
Sbjct: 733 LVDQGYAFKVITHLHGMENLPNLAYSSARERRELLQEVLLKNEEAAGIEIGDDADNSIGR 792
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
G + R G++A L+G +D Y E + K HPL +K
Sbjct: 793 GGNAHKKMRSKAVRGEGSLAGLAGGEDMAYMEYSTNKNKDLKEHHPLIRKM 843
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 397 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 456
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V
Sbjct: 457 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRV 508
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
L+PDH SRP+W+ PN G + LESFSP+ A DFL+ IAEPV RP HIHE
Sbjct: 124 LRPDHSSRPIWICPNDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIHE 173
>gi|154285310|ref|XP_001543450.1| hypothetical protein HCAG_00496 [Ajellomyces capsulatus NAm1]
gi|150407091|gb|EDN02632.1| hypothetical protein HCAG_00496 [Ajellomyces capsulatus NAm1]
Length = 750
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 262/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 380 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 439
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 440 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 499
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 500 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 559
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 560 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 618
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ S
Sbjct: 619 LVDQGYAFKVITHLEGIENLEGLAYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERS 678
Query: 514 GG-----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 679 GGPKARGAAKKVAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKEKVGHHPLFKKI 734
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 283 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRN 342
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 343 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 382
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 45 KKADIQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTI 103
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 104 AEPLSRPTHLHE 115
>gi|358391751|gb|EHK41155.1| hypothetical protein TRIATDRAFT_249572 [Trichoderma atroviride IMI
206040]
Length = 801
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/328 (60%), Positives = 254/328 (77%), Gaps = 7/328 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 439 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY EYL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 499 GHIARVQCAEVWCPMPTEFYDEYLRAPSRKKNLLYIMNPRKFQACQYLINYHESRGDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 559 VFSDNVYALKAYALKLGKAFIYGGTGQAERLQVLENFQHNPQVNTLFLSKIGDTSLDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 619 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 677
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ ++T E+ +LLQ+VL +ET DE+ +G +
Sbjct: 678 LVDQGYAFKVITQLANIEKTPGLAFATATERRELLQKVLVENETMDDEDITDDLFHSGTM 737
Query: 510 G-GVSGGFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 738 GRKKKGAARRTAGTLGELSGGQDMAYIE 765
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K+
Sbjct: 341 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNSVFTG 400
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 401 STGIIVTTYSMVTQSRARSYDAEKMMRFLTGREWGLMLLDE 441
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG+ D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 58 FGSNDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 116
Query: 217 EVHTIPAKMFRRVLTIVQSH 236
E ++ V + H
Sbjct: 117 EYALTTHSLYAAVSVGLSPH 136
>gi|358379026|gb|EHK16707.1| hypothetical protein TRIVIDRAFT_41182 [Trichoderma virens Gv29-8]
Length = 834
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/329 (60%), Positives = 254/329 (77%), Gaps = 8/329 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 471 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 530
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY EYL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 531 GHIARVQCAEVWCPMPTEFYDEYLRAPSRKKNLLYIMNPRKFQACQYLINYHESRGDKII 590
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 591 VFSDNVYALKAYALKLGKAFIYGGTGQAERLQVLENFQHNPQVNTLFLSKIGDTSLDLPE 650
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 651 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 709
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ ++T E+ +LLQ+VL +ET DE+ +G +
Sbjct: 710 LVDQGYAFKVITQLANIEKTPGLAFATATERRELLQKVLVENETMDDEDITDDLFHSGTM 769
Query: 510 G--GVSGGFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 770 GRKKKKGAARRTAGTLGELSGGQDMAYIE 798
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K+
Sbjct: 373 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNSVFTG 432
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 433 STGIIVTTYSMVTQSRARSYDAEKMMRFLTGREWGLMLLDE 473
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG+ D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 84 FGSNDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 142
Query: 217 EVHTIPAKMFRRVLTIVQSH 236
E ++ V + H
Sbjct: 143 EYALTTHSLYAAVSVGLSPH 162
>gi|374533700|gb|AEZ53763.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Spea bombifrons]
Length = 242
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/243 (78%), Positives = 218/243 (89%), Gaps = 1/243 (0%)
Query: 258 LIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYR 317
LIGPKLYEANW+ELQ G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+R
Sbjct: 1 LIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFR 60
Query: 318 ATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKV 377
A Q+LI +HERR DK IVF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+
Sbjct: 61 ACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKI 120
Query: 378 NTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTL 437
NTIF+SKV DTSFDLPEANVLIQISSHGGSR AQRLGR+LRAKKG +AEEYNAFFY+L
Sbjct: 121 NTIFISKVGDTSFDLPEANVLIQISSHGGSRXXXAQRLGRVLRAKKGMVAEEYNAFFYSL 180
Query: 438 VSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE 497
VSQDT EM+YS KRQRFL++QGYS+KVITKLAGMEEE + +STR++Q QLLQ+VLAAS+
Sbjct: 181 VSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEE-DLAFSTREDQQQLLQKVLAASD 239
Query: 498 TDA 500
DA
Sbjct: 240 LDA 242
>gi|259480979|tpe|CBF74098.1| TPA: component of the holoenzyme form of RNA polymerase
transcription factor (Eurofung) [Aspergillus nidulans
FGSC A4]
Length = 818
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/352 (58%), Positives = 259/352 (73%), Gaps = 17/352 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 452 LDEVHVVPAIMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 511
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY MNP K++A Q+LI YHE+RGDK I
Sbjct: 512 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYTMNPRKFQACQFLIDYHEKRGDKVI 571
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 572 VFSDNVYALEKYALKLKKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 631
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 632 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 690
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD---------EERV 505
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +E+ AD ER
Sbjct: 691 LVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNESSADVENVTDDLFSERS 750
Query: 506 AGEVGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVK----HPLFKKF 550
+G G KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 751 SGNRARAKPGVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKEKQHHPLFRKL 802
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 355 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 414
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 415 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 454
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 70 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 128
Query: 217 E 217
E
Sbjct: 129 E 129
>gi|365765060|gb|EHN06574.1| Ssl2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 759
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/351 (58%), Positives = 255/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 403 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 462
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 463 GXIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 522
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 523 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 582
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 583 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 641
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 642 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 701
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 702 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 752
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 306 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 365
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 366 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 423
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 29 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 87
Query: 217 E 217
E
Sbjct: 88 E 88
>gi|340520673|gb|EGR50909.1| Rad3 protein [Trichoderma reesei QM6a]
Length = 829
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/329 (60%), Positives = 254/329 (77%), Gaps = 8/329 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 470 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 529
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY EYL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 530 GHIARVQCAEVWCPMPTEFYDEYLRAPSRKKNLLYIMNPRKFQACQYLINYHESRGDKII 589
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 590 VFSDNVYALKAYALKLGKAFIYGGTGQAERLQVLENFQHNPQVNTLFLSKIGDTSLDLPE 649
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 650 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 708
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ ++T E+ +LLQ+VL +ET DE+ +G +
Sbjct: 709 LVDQGYAFKVITQLANIEKTPGLAFATAAERRELLQKVLVENETMDDEDITDDLFHSGTM 768
Query: 510 G--GVSGGFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 769 GRKKKKGAARRTAGTLGELSGGQDMAYIE 797
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K+
Sbjct: 372 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNSVFTG 431
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 432 STGIIVTTYSMVTQSRARSYDAEKMMKFLTGREWGLMLLDE 472
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 83 FGNNDF-SYLELKKDHRNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 141
Query: 217 E 217
E
Sbjct: 142 E 142
>gi|67902428|ref|XP_681470.1| hypothetical protein AN8201.2 [Aspergillus nidulans FGSC A4]
gi|40739655|gb|EAA58845.1| hypothetical protein AN8201.2 [Aspergillus nidulans FGSC A4]
Length = 833
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/352 (58%), Positives = 259/352 (73%), Gaps = 17/352 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 467 LDEVHVVPAIMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 526
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY MNP K++A Q+LI YHE+RGDK I
Sbjct: 527 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYTMNPRKFQACQFLIDYHEKRGDKVI 586
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 587 VFSDNVYALEKYALKLKKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 646
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 647 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 705
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD---------EERV 505
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +E+ AD ER
Sbjct: 706 LVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNESSADVENVTDDLFSERS 765
Query: 506 AGEVGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVK----HPLFKKF 550
+G G KRS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 766 SGNRARAKPGVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKEKQHHPLFRKL 817
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 370 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 429
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 430 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 469
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 85 FGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 143
Query: 217 E 217
E
Sbjct: 144 E 144
>gi|429854912|gb|ELA29893.1| DNA repair helicase rad25 [Colletotrichum gloeosporioides Nara gc5]
Length = 826
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/333 (59%), Positives = 249/333 (74%), Gaps = 12/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 467 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSEQ 526
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EYL KR LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 527 GHIAKVQCAEVWCPMTAEFYDEYLKASARKRALLYIMNPRKFQAAQYLINYHESRGDKII 586
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA K+ K YIYG T Q+ER+ ILQNF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 587 VFSDNVYALKMYAEKLQKVYIYGGTGQAERMNILQNFQHNPQVNTLFLSKIGDTSLDLPE 646
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAKK E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 647 ATCLIQISSHYGSRRQEAQRLGRILRAKKRN-EEGFNAFFYSLVSKDTQEMYYSSKRQAF 705
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ Y+ E+ +LLQ+VL +E ++E + +G +
Sbjct: 706 LVDQGYAFKVITQLANIEKTPGLAYAAASERRELLQKVLIENEAGGEDEVIDDLFHSGNM 765
Query: 510 GGVS------GGFKRSGGTMASLSGADDAVYHE 536
G +R+ G + LSG D Y E
Sbjct: 766 GRAPARGKKKAAARRTAGLLGDLSGGQDMAYME 798
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+LVG+TA CTV+K +VLC S +SV QW+++F WS I FTS+ K P
Sbjct: 369 AGKTLVGITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIQAFTSDNKGAIFPG 428
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ T++RS EA + M +LQ +EWG+MLLD+
Sbjct: 429 NTGIIVTTYSMVTQTRERSHEAKKMMDFLQTREWGLMLLDE 469
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+KPD +RPL++ P G IFLESF+P+ A DFLI IAEP+ RP IHE
Sbjct: 94 MKPDSTNRPLYIDPAKGRIFLESFNPLAEQAQDFLITIAEPISRPSFIHE 143
>gi|406603748|emb|CCH44773.1| DNA excision repair protein [Wickerhamomyces ciferrii]
Length = 831
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 259/354 (73%), Gaps = 19/354 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW++L ++
Sbjct: 472 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMDLAQK 531
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 532 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIQYHEKRGDKII 591
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N +VNTIF+SKV DTS DLPE
Sbjct: 592 VFADNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQVNTIFLSKVGDTSIDLPE 651
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 652 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 710
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL------AASETDADEERVAGE 508
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL A+ E D + G
Sbjct: 711 LVDQGYAFKVITHLHGMESLPDLAYASARERRELLQEVLLKNEDAASLEVGDDADNSVGR 770
Query: 509 VGGVS-----GGFK--RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
V+ G K R+ G++ASL+G +D Y E + K HPL +K
Sbjct: 771 GNNVTKRSNNGKVKAQRTAGSLASLAGGEDMAYIEYSSNKNKELKEHHPLIQKM 824
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTS+ K+
Sbjct: 375 AGKTLVGITAACTIRKSTIVLCTSSVSVMQWRQQFLQWCTIQPESVAVFTSDNKEMFHSE 434
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L ++EWG ++LD+ VP A + V AA
Sbjct: 435 SGLVVSTYSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAA 492
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 135 DDGVPVAAKKNVEKDDAAVPE---DEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLES 190
D+ V V A N++ VP+ F D+ + + LKPDH SRP+W++P +G I LES
Sbjct: 67 DEDVLVEAGPNLDIPPDYVPDVVSKMFNKNDF-SYLKLKPDHASRPIWISPSDGRIILES 125
Query: 191 FSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDD 250
FSP+ A DFL+ IAEP+ RP HIHE ++ V + L DD
Sbjct: 126 FSPLAEQAQDFLVTIAEPISRPSHIHEYRITAYSLYAAV-------------SVGLETDD 172
Query: 251 KIADLNFL 258
I+ LN L
Sbjct: 173 IISVLNRL 180
>gi|365987532|ref|XP_003670597.1| hypothetical protein NDAI_0F00350 [Naumovozyma dairenensis CBS 421]
gi|343769368|emb|CCD25354.1| hypothetical protein NDAI_0F00350 [Naumovozyma dairenensis CBS 421]
Length = 874
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/351 (58%), Positives = 256/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 518 LDEVHVVPAAMFRRVVSAIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 577
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 578 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 637
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 638 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 697
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 698 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 756
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA------DEERVAGE 508
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A D + G
Sbjct: 757 LVDQGYAFKVITHLHGMENLPNLAYASPRERRELLQEVLLKNEEAAGLEIGDDADNSIGR 816
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
G + K R G++A L+G +D Y E + K HPL +K
Sbjct: 817 GGNLYKRGKSKAVRGEGSLAGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 867
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 421 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 480
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V
Sbjct: 481 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRV 532
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP H+H
Sbjct: 128 FRSHDF-SYLKLRPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHMH 186
Query: 217 E 217
E
Sbjct: 187 E 187
>gi|115433138|ref|XP_001216706.1| DNA repair helicase RAD25 [Aspergillus terreus NIH2624]
gi|114189558|gb|EAU31258.1| DNA repair helicase RAD25 [Aspergillus terreus NIH2624]
Length = 839
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 262/351 (74%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 468 LDEVHVVPASMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 527
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 528 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 587
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 588 VFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 647
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 648 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 706
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ E V ++
Sbjct: 707 LVDQGYAFKVITHLQGIENLEGLAYATPGERRELLQEVMLQNETSAEVEHVTDDLFSAGG 766
Query: 510 --GGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
G G +RS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 767 AKGKAKGAVRRSAATLSGLAGGEDMAYIEYNKSRNKQLKDKAGHHPLFRKI 817
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 371 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAIFTSDNKEKFRRS 430
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 431 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 470
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 148 KDDAAVPED-EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
KD A +D FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 75 KDSAVQKQDPNFGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTI 133
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 134 AEPLSRPTHLHE 145
>gi|344233375|gb|EGV65247.1| DNA repair helicase rad25 [Candida tenuis ATCC 10573]
Length = 829
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/331 (60%), Positives = 251/331 (75%), Gaps = 10/331 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 473 LDEVHVVPAVMFRRVVTTIAAHSKLGLTATLVREDDKIYDLNFLIGPKLYEANWMDLAQK 532
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL + K++LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 533 GHIANVQCAEVWCPMTSEFYQEYLRETSRKKMLLYIMNPTKFQACQFLIHYHEKRGDKII 592
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG TSQ ER++ILQNF+ N +VNTIF+SKV DTS DLPE
Sbjct: 593 VFSDNVYALQEYALKLGKPFIYGATSQQERMKILQNFQHNDQVNTIFLSKVGDTSIDLPE 652
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 653 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 711
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDADEERV- 505
L++QGY++KVIT L GME+ + YST E+ +LLQ+VL +E DAD
Sbjct: 712 LVDQGYAFKVITHLNGMEQLPNLAYSTARERRELLQEVLLKNEDAAGLEIGDDADTTFAR 771
Query: 506 AGEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
G + +S G++A L+G +D Y E
Sbjct: 772 EGRIKTEGSSSVKSAGSLAGLAGGEDMAYLE 802
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF WST + FTSE K+
Sbjct: 376 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWSTIQPESVAAFTSENKEMFSTD 435
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+++T+ RS+++ + M +L ++EWG ++LD+
Sbjct: 436 AGLVVSTYSMVANTRARSYDSQKVMDFLTSREWGFIILDE 475
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 15/102 (14%)
Query: 142 AKKNVEKDD-----AAVPED--------EFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIF 187
+ K+ ++DD +P+D FG D+ + + LKPDH SRP+W++P +G I
Sbjct: 63 SNKDFDEDDLIQLTPDIPQDYVPDAVSKTFGKSDF-SYLRLKPDHFSRPIWISPKDGRII 121
Query: 188 LESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
LESFSP+ A DFLI IAEPV RP HIHE P ++ V
Sbjct: 122 LESFSPLAEQAQDFLITIAEPVSRPSHIHEYKITPYSLYAAV 163
>gi|325093694|gb|EGC47004.1| DNA repair helicase RAD25 [Ajellomyces capsulatus H88]
Length = 1416
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 262/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 418 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 477
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 478 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 537
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 538 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 597
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 598 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 656
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ S
Sbjct: 657 LVDQGYAFKVITHLEGIENLEGLAYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERS 716
Query: 514 GG-----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 717 GGPKARGAAKKVAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKEKVGHHPLFKKI 772
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 321 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRN 380
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 381 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 420
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 24 KKADIQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTI 82
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 83 AEPLSRPTHLHE 94
>gi|344304136|gb|EGW34385.1| DNA repair helicase RAD25 [Spathaspora passalidarum NRRL Y-27907]
Length = 842
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/356 (57%), Positives = 260/356 (73%), Gaps = 22/356 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 481 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 540
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 541 GHIANVQCAEVWCPMTSEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 600
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 601 VFSDNVYALQEYALKLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 660
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 661 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 719
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + Y++ E+ +LLQQVL +E D D
Sbjct: 720 LVDQGYAFKVITHLSGMEQLPDLAYASPRERRELLQQVLLKNEDAAGLEVGDDVDTNFIS 779
Query: 502 -EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFKKF 550
E+R+ E SG R+ G++A L+G +D Y E + HPL +K
Sbjct: 780 KEKRMKLERQQGSGA-TRTAGSLAGLAGGEDMAYIEYSKNKNKELRDQHHPLIQKM 834
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 384 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTSD 443
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+ VP A + V AA
Sbjct: 444 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAAMFRRVVTTIAA 501
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 57/102 (55%), Gaps = 15/102 (14%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LKPDH SRP+W++PN G I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 100 FGKADF-SYLKLKPDHFSRPIWISPNDGRIILESFSPLAEQAQDFLITIAEPISRPSHIH 158
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
E ++ V + L DD I+ LN L
Sbjct: 159 EYRITAYSLYAAV-------------SVGLETDDIISVLNRL 187
>gi|164655445|ref|XP_001728852.1| hypothetical protein MGL_4019 [Malassezia globosa CBS 7966]
gi|159102738|gb|EDP41638.1| hypothetical protein MGL_4019 [Malassezia globosa CBS 7966]
Length = 815
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/317 (63%), Positives = 247/317 (77%), Gaps = 3/317 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVLT +++H KLGLTATL+RED+KI +LNFL+GPKLYEANW++L +
Sbjct: 417 LDEVHVVPASMFRRVLTKIKAHAKLGLTATLVREDEKIDELNFLVGPKLYEANWMDLAAK 476
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFYREYL ++ K++LLY MNP K++A QYLI YHE RGDK I
Sbjct: 477 GHIATVQCAEVWCPMTAEFYREYLRERSRKKMLLYCMNPTKFQAAQYLIHYHENRGDKII 536
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KPYI+G T Q ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 537 VFSDNVYALEAYAIKLGKPYIHGGTPQIERMRILQNFQHNPIVNTIFLSKVGDTSIDLPE 596
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 597 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSRDTAEMFYSTKRQQF 655
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--EERVAGEVGGV 512
LI+QGY+++VI L G E G+ YS++ EQ +LLQ VL ASE+ AD + GE
Sbjct: 656 LIDQGYAFRVIMNLVGQENMPGLVYSSKSEQIELLQSVLIASESAADFGSDVKPGESASA 715
Query: 513 SGGFKRSGGTMASLSGA 529
+ KR G++ +L GA
Sbjct: 716 APSAKRMMGSLNALGGA 732
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS DS I FT++ K+K G
Sbjct: 320 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNVQDSQISVFTADEKEKFSGA 379
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T KRS + + M +L+++EWG +LLD+
Sbjct: 380 SGIVVSTYSMVANTGKRSHTSQKMMNFLESREWGFILLDE 419
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 149 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAE 207
DD +D+ ++M LK DH SRPLW++P+ GHI LE F+ + A DFLIAIAE
Sbjct: 2 DDGGAGVSSILRRDF-SRMPLKLDHNSRPLWISPDDGHIILEGFNALAEQAQDFLIAIAE 60
Query: 208 PVCRPEHIHEVHTIPAKMFRRV 229
PV RP +HE P ++ V
Sbjct: 61 PVSRPNFVHEYKLTPYSLYAAV 82
>gi|401625330|gb|EJS43343.1| ssl2p [Saccharomyces arboricola H-6]
Length = 843
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 254/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ + +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DQGFNAFFYSLVSKDTQEMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEER---VAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEMGDDADNSVGR 785
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
G K R G++A L+G +D Y E + K HPL +K
Sbjct: 786 GPNGHKRFKSKAVRGEGSLAGLAGGEDMAYMEYTTNKNKELKEHHPLIRKM 836
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++PN G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPNDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKL 263
E ++ V +++ + + L + + LNF+ G +
Sbjct: 172 EYKITAYSLYAAVSVGLETDDIISVLDRLSKVPVAESILNFIRGATI 218
>gi|367001645|ref|XP_003685557.1| hypothetical protein TPHA_0E00270 [Tetrapisispora phaffii CBS 4417]
gi|357523856|emb|CCE63123.1| hypothetical protein TPHA_0E00270 [Tetrapisispora phaffii CBS 4417]
Length = 856
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/352 (58%), Positives = 255/352 (72%), Gaps = 18/352 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 500 LDEVHVVPAAMFRRVVTAIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 559
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 560 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 619
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 620 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 679
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 680 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 738
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA------DEERVAGE 508
L++QGY++KVIT L GME + Y+ E+ +LLQ+VL +E A D + G
Sbjct: 739 LVDQGYAFKVITHLHGMELLPNLAYALARERRELLQEVLLKNEEAAGLEVGDDADNTIGR 798
Query: 509 VGGVS-----GGFKRSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
GG S R G++A L+G +D Y E + K HPL +K
Sbjct: 799 -GGHSHKKGKSRIHRGEGSLAGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 849
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 403 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 462
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V
Sbjct: 463 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRV 514
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRP+W++P +G + LESFSP+ A DFL+ IAEPV RP HIH
Sbjct: 129 FRSHDF-SYLKLRPDHASRPIWISPSDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHIH 187
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 188 EYRITAYSLYAAV 200
>gi|328773269|gb|EGF83306.1| hypothetical protein BATDEDRAFT_34108 [Batrachochytrium
dendrobatidis JAM81]
Length = 823
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/336 (59%), Positives = 252/336 (75%), Gaps = 15/336 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+V TI+ +H KLGLTATL+RED+KI +LN+LIGPKLYEANW+EL +
Sbjct: 471 LDEVHVVPAEMFRKVFTIIGTHSKLGLTATLVREDNKIDNLNYLIGPKLYEANWMELARG 530
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCA+VWC M+PEF+RE+L K+ KR LLY MNP K +A QYL+ +HE GDK I
Sbjct: 531 GHIARVQCAQVWCDMTPEFFREFLREKSRKRQLLYTMNPRKVQACQYLVNFHEAMGDKII 590
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA K+++P+IYG TSQSER ++LQ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 591 VFSDNVFALKHYATKLHRPFIYGGTSQSERFRVLQQFRFNPALNTIFLSKVGDTSIDLPE 650
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A+ LIQISSH GSRRQEAQRLGRILRAK+G YNA+FYTLVS+DT EM Y+ KRQ+F
Sbjct: 651 ASCLIQISSHYGSRRQEAQRLGRILRAKRGT-DTGYNAYFYTLVSKDTEEMYYATKRQQF 709
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGYS+++IT + GM++ G+ YS+ +Q +LL VL ++E D + + E+
Sbjct: 710 LIDQGYSFRIITHIEGMDDSAGLAYSSLKDQLELLNTVLISTEADYERDVHQDELDDALQ 769
Query: 515 GFK--------------RSGGTMASLSGADDAVYHE 536
++ RS GTM SLSGAD Y E
Sbjct: 770 TYESEEEAEIEGVQWMMRSSGTMKSLSGADSMAYLE 805
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 78/100 (78%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
+GK+LVGV A CTV+K LVLC S VS EQW+ +F WST + + +FTS +K+K +G
Sbjct: 374 SGKTLVGVAAACTVKKNCLVLCTSSVSAEQWRREFCHWSTIKEGHVAKFTSGSKEKFVGP 433
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++++TY+MI+++ KR+++A + M+++Q++EWG+++LD+
Sbjct: 434 AGVMISTYTMITYSGKRAYDAQKLMEFIQSREWGLLILDE 473
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 151 AAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVC 210
A V + +K+Y A + LKPDH RPLWV G I LE+FS + A DFL AIAEPV
Sbjct: 41 ADVLQGHSTSKNY-AALGLKPDHLLRPLWVCNTGRIILEAFSVLTFQAQDFLTAIAEPVS 99
Query: 211 RPEHIHE 217
RPEHIHE
Sbjct: 100 RPEHIHE 106
>gi|392564211|gb|EIW57389.1| DNA helicase [Trametes versicolor FP-101664 SS1]
Length = 859
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 256/337 (75%), Gaps = 16/337 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 487 LDEVHVVPAAMFRRVVTTIKAHAKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 547 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPKKFQACQFLIKYHEDRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K YI+G T Q+ER++ILQ F+ +P+VNTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVFALEAYAKKLGKLYIHGGTGQTERMRILQWFQHSPEVNTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 667 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+++ + Y +RDEQ +LL VL A+E++AD E +A
Sbjct: 726 LIDQGYAFKVITHLDGLDDLPSLVYKSRDEQIELLSSVLLANESEADLGTDVRAGEGDLA 785
Query: 507 GEVGGVSGGF-------KRSGGTMASLSGADDAVYHE 536
G + G +R+ G++ +LSGA Y E
Sbjct: 786 GTITSKDFGMPTKMPAVQRTTGSLTALSGAQHMSYVE 822
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D I FT+E+K+K G
Sbjct: 390 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFMQWSNVTDKQIAVFTAESKEKFAGE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 450 SGIVVSTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 501
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LKPDH SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHE
Sbjct: 107 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHE 156
>gi|448090109|ref|XP_004196988.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|448094493|ref|XP_004198019.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|359378410|emb|CCE84669.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|359379441|emb|CCE83638.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
Length = 849
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 262/354 (74%), Gaps = 19/354 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+RED+KI DLNFLIGPKLYEANW++L ++
Sbjct: 491 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDEKIGDLNFLIGPKLYEANWMDLAQK 550
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP+K++A Q+LI YHE+RGDK I
Sbjct: 551 GHIANVQCAEVWCPMTSEFYQEYLRESARKRMLLYIMNPSKFQACQFLIHYHEKRGDKII 610
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 611 VFSDNVYALREYALKLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 670
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 671 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQVF 729
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDADEERVA 506
L++QGY++KVIT L+GME + Y++ E+ +LLQ+VL +E DAD +
Sbjct: 730 LVDQGYAFKVITHLSGMESLPDLAYASARERRELLQKVLLENEDAAGLEIGDDADTNFMP 789
Query: 507 GE-----VGGVSGGFKRSGGTMASLSGADDAVYHE-SRFSNVK----HPLFKKF 550
E + S RS G++ASL+G +D Y E S+ N + HPL +K
Sbjct: 790 REFRDKRMKTESSNATRSAGSLASLAGGEDMAYIEYSKNKNKEIKEHHPLIQKM 843
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W + + FTSE K+
Sbjct: 394 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCSIQPENVAVFTSENKEMFSSE 453
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L ++EWG ++LD+ VP A + V AA
Sbjct: 454 AGLVVSTYSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAA 511
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 55/102 (53%), Gaps = 15/102 (14%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LKPDH SRP+W+ PN I LESFSP+ A DFLI IAEPV RP HIH
Sbjct: 105 FGKADF-SYLRLKPDHFSRPIWICPNDARIILESFSPLAEQAQDFLITIAEPVSRPSHIH 163
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
E ++ V + L DD I+ LN L
Sbjct: 164 EYKITAYSLYAAV-------------SVGLETDDIISVLNRL 192
>gi|119183122|ref|XP_001242631.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392865533|gb|EJB10993.1| DNA repair helicase rad25 [Coccidioides immitis RS]
Length = 832
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/355 (58%), Positives = 263/355 (74%), Gaps = 20/355 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 464 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 523
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 524 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 583
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 584 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 643
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 644 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAF 702
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ S
Sbjct: 703 LVDQGYAFKVITHLQGIENLEGLAYATAAERRELLQEVMLQNETSAAVEEVVDDLFSERS 762
Query: 514 GG----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLF+KF
Sbjct: 763 GGPRAKAARKAAVKRSAATLSGLAGGEDMAYIEHNKSRNKQLKEKVSHHPLFRKF 817
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D + I FTS+ K++
Sbjct: 367 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRS 426
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 427 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 466
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 137
Query: 217 E 217
E
Sbjct: 138 E 138
>gi|50293447|ref|XP_449135.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528448|emb|CAG62105.1| unnamed protein product [Candida glabrata]
Length = 862
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/350 (58%), Positives = 259/350 (74%), Gaps = 15/350 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 507 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 566
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 567 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 626
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+I+G T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 627 VFSDNVYALQEYALKLGKPFIFGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 686
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 687 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 745
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA------DEERVAGE 508
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A D + G
Sbjct: 746 LVDQGYAFKVITHLHGMENLPNLAYASARERRELLQEVLLKNEEAAGIEIGDDADNSIGR 805
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHE--SRFSNVK--HPLFKKF 550
G + + R G++A L+G +D Y E ++ ++K HPL +K
Sbjct: 806 GGSLYKKARSKAMRGEGSLAGLAGGEDMAYMEYSTKAKDLKEHHPLIRKM 855
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 410 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 469
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 470 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 527
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LKPDH SRP+W++P +G I LESFSP+ A DFL+ IAEP+ RP HIHE
Sbjct: 144 LKPDHASRPIWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIHE 193
>gi|440638918|gb|ELR08837.1| DNA excision repair protein ERCC-3 [Geomyces destructans 20631-21]
Length = 869
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/358 (56%), Positives = 257/358 (71%), Gaps = 22/358 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 503 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKINDLNFLIGPKLYEANWMELAEQ 562
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EYL KR LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 563 GHIAKVQCAEVWCPMTTEFYSEYLRETHRKRGLLYIMNPRKFQACQFLIDYHEKRGDKII 622
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA K+ + YIYG T Q+ER++IL NF+ N +NT+F+SK+ DTS DLPE
Sbjct: 623 VFSDNVYALKMYAEKLGRAYIYGETPQAERMRILDNFQHNENINTLFLSKIGDTSLDLPE 682
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 683 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 741
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L G+E G+ +ST E+ +LLQ V+ +E D E++A ++ VSG
Sbjct: 742 LVDQGYAFKVITHLQGIENLPGLAFSTPAERRELLQNVMIQNEGAFDSEKIADDLFSVSG 801
Query: 515 ------------GFKRSGGTMASLSGADDAVYHESRFSNV---------KHPLFKKFR 551
G +R+ GT+A LSG D Y E S +P FKK +
Sbjct: 802 AGGNRNAAFRKKGVRRTAGTLAELSGGQDMAYIEQNRSKNKELKKDKKPSNPFFKKLQ 859
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK ++LC S +SV QW+ +F WS + + I FTS+ K+K
Sbjct: 406 AGKTLVGITAACTIRKGVIILCTSSMSVVQWRQEFLKWSNINPNDIAIFTSDHKEKFTRN 465
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM++ T++RS++A + M++LQN+EWG+M+LD+
Sbjct: 466 TGIIVSTYSMVTQTRQRSYDAGKMMEFLQNREWGLMILDE 505
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAI 205
E+D A+ FG+ D+ + + LKPDH +RPLW+ P+ I LESFSP+ A DFL I
Sbjct: 111 ERDSAS---HHFGSNDF-SYLSLKPDHDNRPLWIDPHKARIILESFSPLAAQAQDFLTTI 166
Query: 206 AEPVCRPEHIHEVHTIPAKMFRRV 229
AEP+ RPE++HE P ++ V
Sbjct: 167 AEPLSRPEYLHEYALTPHSLYAAV 190
>gi|328767381|gb|EGF77431.1| hypothetical protein BATDEDRAFT_20761 [Batrachochytrium
dendrobatidis JAM81]
Length = 777
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/336 (59%), Positives = 252/336 (75%), Gaps = 15/336 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+V TI+ +H KLGLTATL+RED+KI +LN+LIGPKLYEANW+EL +
Sbjct: 425 LDEVHVVPAEMFRKVFTIIGTHSKLGLTATLVREDNKIDNLNYLIGPKLYEANWMELARG 484
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCA+VWC M+PEF+RE+L K+ KR LLY MNP K +A QYL+ +HE GDK I
Sbjct: 485 GHIARVQCAQVWCDMTPEFFREFLREKSRKRQLLYTMNPRKVQACQYLVNFHEAMGDKII 544
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA K+++P+IYG TSQSER ++LQ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 545 VFSDNVFALKHYATKLHRPFIYGGTSQSERFRVLQQFRFNPALNTIFLSKVGDTSIDLPE 604
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A+ LIQISSH GSRRQEAQRLGRILRAK+G YNA+FYTLVS+DT EM Y+ KRQ+F
Sbjct: 605 ASCLIQISSHYGSRRQEAQRLGRILRAKRGT-DTGYNAYFYTLVSKDTEEMYYATKRQQF 663
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGYS+++IT + GM++ G+ YS+ +Q +LL VL ++E D + + E+
Sbjct: 664 LIDQGYSFRIITHIEGMDDSAGLAYSSLKDQLELLNTVLISTEADYERDVHQDELDDALQ 723
Query: 515 GFK--------------RSGGTMASLSGADDAVYHE 536
++ RS GTM SLSGAD Y E
Sbjct: 724 TYESEEEAEIEGVQWMMRSSGTMKSLSGADSMAYLE 759
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 78/100 (78%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
+GK+LVGV A CTV+K LVLC S VS EQW+ +F WST + + +FTS +K+K +G
Sbjct: 328 SGKTLVGVAAACTVKKNCLVLCTSSVSAEQWRREFCHWSTIKEGHVAKFTSGSKEKFVGP 387
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++++TY+MI+++ KR+++A + M+++Q++EWG+++LD+
Sbjct: 388 AGVMISTYTMITYSGKRAYDAQKLMEFIQSREWGLLILDE 427
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 151 AAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVC 210
A V + +K+Y A + LKPDH RPLWV G I LE+FS + A DFL AIAEPV
Sbjct: 41 ADVLQGHSTSKNY-AALGLKPDHLLRPLWVCNTGRIILEAFSVLTFQAQDFLTAIAEPVS 99
Query: 211 RPEHIHE 217
RPEHIHE
Sbjct: 100 RPEHIHE 106
>gi|303319627|ref|XP_003069813.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109499|gb|EER27668.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 832
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/355 (58%), Positives = 263/355 (74%), Gaps = 20/355 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 464 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 523
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 524 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 583
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 584 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 643
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 644 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAF 702
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ S
Sbjct: 703 LVDQGYAFKVITHLQGIENLEGLAYATAAERRELLQEVMLQNETSAAVEEVVDDLFSERS 762
Query: 514 GG----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLF+KF
Sbjct: 763 GGPRAKAARKAAVKRSAATLSGLAGGEDMAYIEHNKSRNKQLKEKVSHHPLFRKF 817
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D + I FTS+ K++
Sbjct: 367 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRS 426
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 427 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 466
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 79 FGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 137
Query: 217 E 217
E
Sbjct: 138 E 138
>gi|395332204|gb|EJF64583.1| DNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 862
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/338 (60%), Positives = 259/338 (76%), Gaps = 18/338 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ +++H KLGLTATL+REDDKIADLN++IGPKLYEANW+EL +
Sbjct: 487 LDEVHVVPAVMFRRVVSTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMELAAK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 547 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPRKFQACQFLIKYHEDRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K YI+G T Q+ER++ILQ+F+ +P+VNTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVFALEAYAKKLGKLYIHGGTGQTERMRILQHFQHSPEVNTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 667 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--EERVAGEVGGV 512
LI+QGY++KVIT L G+++ G+ Y +RDEQ +LL VL A+E++A+ + VA E G +
Sbjct: 726 LIDQGYAFKVITHLDGLDDLPGLVYKSRDEQIELLSSVLLANESEAELGTDVVASE-GDL 784
Query: 513 SG--------------GFKRSGGTMASLSGADDAVYHE 536
G +R+ G++ +LSGA Y E
Sbjct: 785 KGTVTSKDFGTPSKAPTVQRTTGSLTALSGAQHMSYVE 822
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D I FT++ K+K G
Sbjct: 390 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFMQWSNITDKQIAVFTADQKEKFAGD 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+
Sbjct: 450 SGIVVSTYSMVANTGNRSHESKKMMEFLTSREWGFILLDE 489
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 165 AQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
A + LKPDH SRPLW++P +GHI LE+FSP+ A DFL+AIAEPV RP IHE
Sbjct: 103 AWLHLKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAIAEPVSRPAFIHE 156
>gi|367010132|ref|XP_003679567.1| hypothetical protein TDEL_0B02270 [Torulaspora delbrueckii]
gi|359747225|emb|CCE90356.1| hypothetical protein TDEL_0B02270 [Torulaspora delbrueckii]
Length = 842
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/351 (58%), Positives = 257/351 (73%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 486 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 545
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 546 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 605
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+I+G T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 606 VFSDNVYALQEYALKLGKPFIFGATPQQERMNILQNFQFNDQINTIFLSKVGDTSIDLPE 665
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ + +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 666 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DDGFNAFFYSLVSKDTQEMYYSTKRQAF 724
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVG- 510
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 725 LVDQGYAFKVITHLHGMENLPNLAYASARERRELLQEVLLKNEEAAGIEIGDDADNSVGR 784
Query: 511 GVSGGFK------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
GV+ K R G++A L+G +D Y E + K HPL +K
Sbjct: 785 GVNAHKKAKSKAVRGEGSLAGLAGGEDMAYMEYSTNKNKDLKEHHPLIRKM 835
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K A+VLC S VSV QW+ QF W T + FTS+ K+
Sbjct: 389 AGKTLVGITAACTIKKSAIVLCTSSVSVMQWRQQFLQWCTLQPENVAVFTSDNKEMFQTE 448
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 449 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVTTIAA 506
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH +RP+W++P +G + LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 117 FRSHDF-SYLKLRPDHAARPIWISPSDGRVILESFSPLAEQAQDFLVTIAEPISRPSHIH 175
Query: 217 E 217
E
Sbjct: 176 E 176
>gi|254586097|ref|XP_002498616.1| ZYRO0G14630p [Zygosaccharomyces rouxii]
gi|238941510|emb|CAR29683.1| ZYRO0G14630p [Zygosaccharomyces rouxii]
Length = 857
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/352 (57%), Positives = 255/352 (72%), Gaps = 18/352 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 499 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 558
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 559 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQAAQFLIQYHEKRGDKII 618
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+I+G T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 619 VFSDNVYALQEYALKLGKPFIFGSTPQQERMNILQNFQFNDQINTIFLSKVGDTSIDLPE 678
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 679 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 737
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA------DEERVAGE 508
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A D + G
Sbjct: 738 LVDQGYAFKVITHLHGMENLPNLTYASARERRELLQEVLLKNEEAAGIEIGDDADNTIGR 797
Query: 509 VGGVSGGFK------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKK 549
G K R G++A L+G +D Y E + K HPL +K
Sbjct: 798 GGNAHKKAKMKAKAVRGEGSLAGLAGGEDMAYMEYSTNKNKDLKEHHPLIRK 849
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K A+VLC S VSV QW+ QF WST + FTS+ K+
Sbjct: 402 AGKTLVGITAACTIKKSAVVLCTSSVSVMQWRQQFLQWSTLQPENVAVFTSDNKEMFHTE 461
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V
Sbjct: 462 AGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRV 513
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + LKPDH SRPLW++P +G + LESFSP+ A DFL+ IAEPV RP H+H
Sbjct: 120 FRSHDF-SYLKLKPDHASRPLWISPSDGRVILESFSPLAEQAQDFLVTIAEPVSRPSHMH 178
Query: 217 E 217
E
Sbjct: 179 E 179
>gi|45198798|ref|NP_985827.1| AFR280Wp [Ashbya gossypii ATCC 10895]
gi|44984827|gb|AAS53651.1| AFR280Wp [Ashbya gossypii ATCC 10895]
gi|374109058|gb|AEY97964.1| FAFR280Wp [Ashbya gossypii FDAG1]
Length = 830
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/353 (58%), Positives = 258/353 (73%), Gaps = 20/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 474 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 533
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 534 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIQYHEKRGDKII 593
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N +++TIF+SKV DTS DLPE
Sbjct: 594 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQISTIFLSKVGDTSIDLPE 653
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 654 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 712
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE-----V 509
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E GE V
Sbjct: 713 LVDQGYAFKVITHLNGMESLPNLAYASARERRELLQEVLLKNEEAAGIE--IGEDSENFV 770
Query: 510 GGVSGGFKR-------SGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
G +G KR G++A L+G +D Y E + K HPL +K
Sbjct: 771 GRGAGAIKRMKSKAVKGEGSLAGLAGGEDIAYLEYSSNKNKDLKDHHPLIRKM 823
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T + FTS+ K+
Sbjct: 377 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSDNKEMFQTE 436
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG +LLD+ VP A + V AA
Sbjct: 437 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFILLDEVHVVPAAMFRRVVSTIAA 494
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + LKPDH SRPLW+APN G I LESFSP+ A DFL+ IAEPV RP H+H
Sbjct: 104 FRSSDF-SYLKLKPDHASRPLWIAPNDGRIILESFSPLAEQAQDFLVTIAEPVSRPSHVH 162
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 163 EYKITAYSLYAAV 175
>gi|452841426|gb|EME43363.1| hypothetical protein DOTSEDRAFT_72690 [Dothistroma septosporum
NZE10]
Length = 847
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/356 (58%), Positives = 255/356 (71%), Gaps = 14/356 (3%)
Query: 196 RHAHDFLIAIAEPVCRP---EHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKI 252
R AHD +A+ R + EVH +PA+MFRRV +++H KLGLTATLLREDDKI
Sbjct: 458 RRAHDSAQVMADITSREWGLMILDEVHVVPAEMFRRVTERIKTHSKLGLTATLLREDDKI 517
Query: 253 ADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVM 311
DLNFLIGPKLYEANWL+L + G IARVQCAEVWCPM+ EFY+ YL KT+ KR LL M
Sbjct: 518 KDLNFLIGPKLYEANWLQLSEEGHIARVQCAEVWCPMTTEFYKAYLEAKTTNKRSLLSTM 577
Query: 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNF 371
NP KY+A QYLI YHERRGDK IVFSDNV+ALK YA + KPYIYG TSQ ER +LQNF
Sbjct: 578 NPRKYQACQYLIDYHERRGDKIIVFSDNVYALKRYAEGLTKPYIYGDTSQRERELVLQNF 637
Query: 372 KLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYN 431
+ N V+TIF+SK+ DTS DLPEA LIQ+SSH GSRRQEAQRLGRILRAK+ E +N
Sbjct: 638 QQNDAVSTIFLSKIGDTSLDLPEATCLIQVSSHYGSRRQEAQRLGRILRAKRRN-DEGFN 696
Query: 432 AFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQ 491
AFFY+LVS+DT EM YS KRQ FL++QGY++KVIT G+ + G+HY+ + ++ LLQ
Sbjct: 697 AFFYSLVSKDTNEMYYSSKRQAFLVDQGYAFKVITHFKGLADMPGLHYNNQHDRMDLLQD 756
Query: 492 VLAASETDADEERVAGEVGG---VS------GGFKRSGGTMASLSGADDAVYHESR 538
V+ S+T D E + + G VS G +R GT+++L+G D Y E +
Sbjct: 757 VMLQSDTAGDAEDIKDSLWGDKNVSKSRKKGSGVRRQAGTLSNLAGGDSMAYIEGK 812
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+ K +VLC S +S QWK +FK WS D I FTS K +
Sbjct: 383 AGKTLVGITAACTIAKSTIVLCTSAMSAVQWKEEFKKWSNIDPDDIVIFTSGEKQRLHQK 442
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+++ TYSM++ + +R+ ++ Q M + ++EWG+M+LD+
Sbjct: 443 AGVIICTYSMVTQSTRRAHDSAQVMADITSREWGLMILDE 482
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPA 223
LKPDH RPLW+ P NG + LE+F+P+++ A DFLI IAEP R ++HE +TI A
Sbjct: 91 LKPDHHMRPLWIDPANGRVVLETFAPLFKRAQDFLINIAEPQSRTTNMHE-YTINA 145
>gi|389749796|gb|EIM90967.1| DNA repair helicase rad25 [Stereum hirsutum FP-91666 SS1]
Length = 860
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/338 (60%), Positives = 255/338 (75%), Gaps = 17/338 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 484 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 543
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL +T KR+LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 544 GHIANVQCAEVWCPMTPEFYREYLREQTRKRMLLYCMNPRKFQACQFLIKYHEDRGDKII 603
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ KPYI+G T Q ER++ILQ F+ NP+VNTIF+SKV DTS DLPE
Sbjct: 604 VFSDNVFALEAYAKKLKKPYIHGGTGQVERMRILQFFQHNPQVNTIFLSKVGDTSIDLPE 663
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 664 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 722
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+E + Y ++ EQ +L+Q VL A+E+ A+ E +A
Sbjct: 723 LIDQGYAFKVITHLDGLENLPDLVYKSQSEQIELMQSVLLANESAAELGTDIRAGEGDLA 782
Query: 507 GEV-----GGVSG---GFKRSGGTMASLSGADDAVYHE 536
G + G G +R+ G++ +LSGA Y E
Sbjct: 783 GTITSKDFGAPPGRVPAAQRTTGSLTALSGAAHMSYIE 820
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D I FT++ K+K G
Sbjct: 387 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRSQFMQWSNVTDRQIAVFTADQKEKFAGD 446
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS+E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 447 SGIVVSTYSMVANTGNRSYESRKMMEFLTSREWGFILLDEVHVVPAAMFRRV 498
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH SRPLW++P +GHI LE+FSP+ A DFLIAI+EPV RP IHE
Sbjct: 105 LKSDHASRPLWISPEDGHIILEAFSPIAEQAQDFLIAISEPVSRPSFIHE 154
>gi|342321393|gb|EGU13327.1| tRNA Guanine-N1-methyltransferase [Rhodotorula glutinis ATCC
204091]
Length = 1800
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/361 (58%), Positives = 258/361 (71%), Gaps = 27/361 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L +
Sbjct: 615 LDEVHVVPAAMFRRVVTKIKAHTKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAEN 674
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWC M+PEFYREYL + K++LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 675 GHIAKVQCAEVWCDMTPEFYREYLRESSRKKMLLYCMNPRKFQACQFLIQYHENRGDKII 734
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ K YI+G T Q ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 735 VFSDNVYALEAYAKKLGKLYIHGGTPQVERMRILQNFQHNPIVNTIFLSKVGDTSIDLPE 794
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 795 ATCLIQISSHFGSRRQEAQRLGRILRAKR-RNDEGFNAFFYSLVSKDTQEMYYSSKRQGF 853
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--EERVAGEVGGV 512
L++QGY+++VIT L G+E+ + Y T+ EQ +LLQ VL ASETDAD + V+ G
Sbjct: 854 LVDQGYAFRVITSLDGLEQLDNLVYPTKAEQIELLQSVLLASETDADVGGDEVSKAPSGA 913
Query: 513 SGGFK--------------RSGGTMASLSGADDAVYHESRFSNVK----------HPLFK 548
+ G+ R G++ +LSG Y E + S K H LFK
Sbjct: 914 ASGYNSPAPGRRDGAPQATRIAGSLQALSGGQSMAYSERQKSANKQLSKEAKSNRHNLFK 973
Query: 549 K 549
K
Sbjct: 974 K 974
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA T+RK +VLC S VSV QW+ QF WST +S I FT++ K+K G
Sbjct: 518 AGKTLVGITAATTIRKSCIVLCTSSVSVMQWRQQFLQWSTIKESAISVFTADQKEKFTGE 577
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++ QKRS ++ + M +L ++EWG +LLD+
Sbjct: 578 AGIVVSTYSMVANRQKRSHDSQKMMDFLTSREWGFILLDE 617
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVH 219
+DY + L+PD SRP ++ P+ GHI LE+F P+ ++A DFL+AIAEPV RP++IHE
Sbjct: 215 RDY-GYLPLRPDQASRPFYIVPSTGHIILENFHPLAKYATDFLVAIAEPVSRPKYIHEYK 273
Query: 220 TIPAKMFRRV 229
P ++ V
Sbjct: 274 LTPHSLYAAV 283
>gi|402224508|gb|EJU04570.1| DNA repair helicase rad25 [Dacryopinax sp. DJM-731 SS1]
Length = 762
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/358 (58%), Positives = 263/358 (73%), Gaps = 26/358 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV+T +++H KLGLTATL+RED+KI DLN++IGPKLYEANW++L +
Sbjct: 396 LDEVHVVPAQMFRRVVTTIKAHAKLGLTATLVREDNKIDDLNYMIGPKLYEANWMDLAAK 455
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM PEFYREYL K +R+LLY MNPNK++A Q+LI YHERRGDK I
Sbjct: 456 GHIANVQCAEVWCPMPPEFYREYLREKPRRRMLLYCMNPNKFQACQFLIDYHERRGDKII 515
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K++KP+I+G T+Q ER+++LQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 516 VFSDNVFALEAYAKKLSKPFIHGATAQVERMRVLQNFQHNPVVNTIFLSKVGDTSIDLPE 575
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 576 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQQF 634
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++KVIT+L G+ + Y T EQ +LLQ VL A+E+ D ++ + G
Sbjct: 635 LIDQGYAFKVITQLEGLHTMPNLVYKTPSEQIELLQSVLIANESALDFS--GSDLMNLQG 692
Query: 515 G-------------FKRSGGTMASLSGADDAVYHE---------SRFSNV-KHPLFKK 549
KR+ G++++LSGA Y E +R +N +H LFKK
Sbjct: 693 DQAQKARNRAQKYEAKRAVGSLSALSGAQHMSYIERNKTANRQLAREANANRHKLFKK 750
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D I FT+E K+K G
Sbjct: 299 AGKTLVGITAACTIKKSTLVLCTSTVSVMQWKQQFMQWSNITDRQISVFTAEQKEKFSGA 358
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T+ RS+E+ + M +L ++EWG +LLD+
Sbjct: 359 AGIVVSTYSMVANTRNRSYESQKMMDFLTSREWGFILLDE 398
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ A + LK DH SRPLW+ P +GHI LE FSP+ A DFL+AI+EPV RP IH
Sbjct: 2 FGDQDF-AYLQLKGDHMSRPLWIDPVDGHIILEGFSPIAEQAQDFLVAISEPVSRPSFIH 60
Query: 217 E 217
E
Sbjct: 61 E 61
>gi|343425159|emb|CBQ68696.1| probable SSL2-DNA helicase [Sporisorium reilianum SRZ2]
Length = 951
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/287 (66%), Positives = 238/287 (82%), Gaps = 1/287 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVLT +++H KLGLTATL+RED+KI +LNFL+GPKLYEANW++L +
Sbjct: 570 LDEVHVVPASMFRRVLTKIKAHSKLGLTATLVREDEKIDELNFLVGPKLYEANWMDLAAK 629
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL K+ K++LLY MNPNK++A Q+LI YHE RGDK I
Sbjct: 630 GHIATVQCAEVWCPMTPEFYREYLREKSRKKMLLYCMNPNKFQACQFLIDYHENRGDKII 689
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ KP+I+G T+ ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 690 VFSDNVYALEAYAFKLKKPFIHGGTAHLERMRILQNFQHNPMVNTIFLSKVGDTSIDLPE 749
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 750 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTAEMFYSTKRQQF 808
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD 501
LI+QGY+++VIT L GM++ G+ Y ++ EQ +LLQ VL A+E+DAD
Sbjct: 809 LIDQGYAFRVITHLVGMQDMPGLVYKSQAEQIELLQSVLIANESDAD 855
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D+ I FT++ K+K G
Sbjct: 473 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGA 532
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T KRS + + M +L+++EWG +LLD+
Sbjct: 533 SGIVVSTYSMVANTGKRSHTSQKMMNFLESREWGFILLDE 572
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
E F +D+ +M LK DH SRPLW++P+ GHI LE FS + A DFLIAIAEPV RP
Sbjct: 145 ELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIILEGFSALAEQAQDFLIAIAEPVSRPA 203
Query: 214 HIHEVHTIPAKMFRRVLTIVQSH 236
+IHE P ++ V +Q +
Sbjct: 204 YIHEYKLTPYSLYAAVSVGLQPN 226
>gi|380478837|emb|CCF43372.1| DNA repair helicase RAD25 [Colletotrichum higginsianum]
Length = 374
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/333 (59%), Positives = 249/333 (74%), Gaps = 12/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 15 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSEQ 74
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EYL KR LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 75 GHIAKVQCAEVWCPMTTEFYDEYLKASARKRALLYIMNPRKFQAAQYLINYHESRGDKII 134
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA K+ K YI+G T Q+ER+ ILQNF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 135 VFSDNVYALKTYAEKLEKAYIFGGTGQAERMNILQNFQHNPQVNTLFLSKIGDTSLDLPE 194
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 195 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 253
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ Y+ E+ +LLQ+VL +E ++E + +G +
Sbjct: 254 LVDQGYAFKVITQLANIEKTPGLAYAAASERRELLQKVLIENEAGGEDEVIDDLFHSGTM 313
Query: 510 GGV------SGGFKRSGGTMASLSGADDAVYHE 536
G +R+ G + LSG D Y E
Sbjct: 314 GRAPLRGKKKAAARRTAGLLGDLSGGQDMAYME 346
>gi|363751417|ref|XP_003645925.1| hypothetical protein Ecym_4025 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889560|gb|AET39108.1| hypothetical protein Ecym_4025 [Eremothecium cymbalariae
DBVPG#7215]
Length = 853
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 258/356 (72%), Gaps = 26/356 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 493 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKISDLNFLIGPKLYEANWMELSQK 552
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 553 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIQYHEKRGDKII 612
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 613 VFSDNVYALQEYALKLGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 672
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 673 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 731
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +EE E+G S
Sbjct: 732 LVDQGYAFKVITHLHGMETLPNLAYASARERRELLQEVLL-----KNEEAAGIEIGDDSE 786
Query: 515 GFKRSG---------------GTMASLSGADDAVYHE---SRFSNVK--HPLFKKF 550
F G G++A L+G +D Y E ++ ++K HPL +K
Sbjct: 787 NFVGRGSNPNKRMKSKAVKGEGSLAGLAGGEDMAYLEYVPNKNKDLKDHHPLIRKM 842
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T + FTS+ K+
Sbjct: 396 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSDNKEMFQTE 455
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG +LLD+ VP A + V AA
Sbjct: 456 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFILLDEVHVVPAAMFRRVVSTIAA 513
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + LKPDH SRPLW+APN G I LESFSP+ A DFL+ IAEPV RP H+H
Sbjct: 122 FRSSDF-SYLKLKPDHSSRPLWIAPNDGRIILESFSPLAEQAQDFLVTIAEPVSRPSHVH 180
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIG 260
E ++ V +++ + + L + + +NF+ G
Sbjct: 181 EYKITAYSLYAAVSVGLETDDIIAVLDRLSKVPVASSIINFIKG 224
>gi|449298112|gb|EMC94129.1| hypothetical protein BAUCODRAFT_221487 [Baudoinia compniacensis
UAMH 10762]
Length = 852
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/335 (60%), Positives = 248/335 (74%), Gaps = 14/335 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV +++H KLGLTATLLREDDKI DLNFLIGPKLYEANWL+L +
Sbjct: 481 LDEVHVVPAEMFRRVTERIKTHSKLGLTATLLREDDKIKDLNFLIGPKLYEANWLQLSEE 540
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G IARVQCAEVWCPM+ EFY EY+ +T+ K+ LL +MNP K++A Q+LI +HERRGDK
Sbjct: 541 GHIARVQCAEVWCPMTTEFYSEYIQAQTTNKKSLLSIMNPRKFQACQFLIDFHERRGDKI 600
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+ALK YA + KPYIYG T Q ER +LQNF+ N V+TIF+SK+ DTS DLP
Sbjct: 601 IVFSDNVYALKQYAEGLKKPYIYGDTGQRERDLVLQNFQFNDAVSTIFLSKIGDTSLDLP 660
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ
Sbjct: 661 EATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTNEMYYSSKRQA 719
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE----- 508
FL++QGY++KVIT L G++ + +ST++E+ LL VL SET DEE++ +
Sbjct: 720 FLVDQGYAFKVITHLNGIDRMPDLRFSTQEERMTLLTDVLLQSETAGDEEKIVDDLFSDR 779
Query: 509 -------VGGVSGGFKRSGGTMASLSGADDAVYHE 536
VG G KR GT+ASL+G +D Y E
Sbjct: 780 ATFRKSGVGKKGSGVKRQAGTLASLAGGEDMAYLE 814
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT +K +VLC S S QW+ +F WS + + FTS K + P
Sbjct: 384 AGKTLVGITAACTEKKSVIVLCTSATSAGQWRAEFIKWSNVNPDDVIIFTSTEKGRVPNR 443
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I+V TYSM++ +R+ ++ QTM + ++EWG+M+LD+
Sbjct: 444 ACIIVCTYSMVTQNTRRAHDSKQTMDQITSREWGLMVLDE 483
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 169 LKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPA 223
LKPDH+ RPLW+ + G + LE+FSP ++ A +FLI IAEP R ++HE +TI A
Sbjct: 94 LKPDHRLRPLWIDRHRGRVVLETFSPSFKQAQNFLINIAEPQSRTTNMHE-YTINA 148
>gi|310791605|gb|EFQ27132.1| DNA repair helicase rad25 [Glomerella graminicola M1.001]
Length = 821
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/333 (59%), Positives = 249/333 (74%), Gaps = 12/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 462 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSEQ 521
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EYL KR LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 522 GHIAKVQCAEVWCPMTTEFYDEYLKASARKRALLYIMNPRKFQAAQYLINYHESRGDKII 581
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA K+ K YI+G T Q+ER+ ILQNF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 582 VFSDNVYALKTYAEKLEKAYIFGGTGQAERMNILQNFQHNPQVNTLFLSKIGDTSLDLPE 641
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 642 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 700
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ Y+ E+ +LLQ+VL +E ++E + +G +
Sbjct: 701 LVDQGYAFKVITQLANIEKTPGLAYAAASERRELLQKVLIENEAGGEDEVIDDLFHSGTM 760
Query: 510 GGVS------GGFKRSGGTMASLSGADDAVYHE 536
G +R+ G + LSG D Y E
Sbjct: 761 GRAPPRGKKKAAARRTAGLLGDLSGGQDMAYME 793
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+LVG+TA CTV+K +VLC S +SV QW+++F WS I FTS+ K + P
Sbjct: 364 AGKTLVGITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIEAFTSDNKGRVFPG 423
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ T++RS EA + M +LQ +EWG+MLLD+
Sbjct: 424 NTGIIVTTYSMVTQTRERSHEAKKMMDFLQTREWGLMLLDE 464
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 167 MVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
+ LKPD+++RPLW+ P G IFLESF+P+ A DFLI IAEP+ RP +HE +
Sbjct: 89 LALKPDYQNRPLWIDPAKGRIFLESFNPLAEQAQDFLITIAEPISRPSFVHEYALTTHSL 148
Query: 226 FRRVLTIVQSH 236
+ V + H
Sbjct: 149 YAAVSVGLSPH 159
>gi|170099355|ref|XP_001880896.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644421|gb|EDR08671.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 769
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/339 (60%), Positives = 260/339 (76%), Gaps = 18/339 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 389 LDEVHVVPAVMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 448
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNPNK++A Q+L+ YHE RGDK I
Sbjct: 449 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPNKFQACQFLVKYHEGRGDKVI 508
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA +++K YI+G TSQ ER++ILQ F+ +P+VNTIF+SKV DTS DLPE
Sbjct: 509 VFSDNVYALEAYAKRLHKLYIHGGTSQVERMRILQWFQHSPEVNTIFLSKVGDTSIDLPE 568
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 569 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQQF 627
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+E+ + Y TRDEQ +L+ VL A+E++AD E +A
Sbjct: 628 LIDQGYAFKVITHLDGLEDLPDLVYKTRDEQIELISSVLLANESEADLGSDIRAAEGDLA 687
Query: 507 GEVG----GVSGGFK-----RSGGTMASLSGADDAVYHE 536
G V G +G + R+ G++ +LSGA Y E
Sbjct: 688 GTVTSKDFGPAGPSRFPTAHRTTGSLTALSGAQHMSYIE 726
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D I FT++ K+K G
Sbjct: 292 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTADQKEKFAGD 351
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+
Sbjct: 352 SGIVVSTYSMVANTHNRSHESKKMMEFLTSREWGFILLDE 391
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH SRPLW++P +GHI LE+FSP+ A DFL AI+EPV RP IHE ++
Sbjct: 10 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLTAISEPVSRPAFIHEYKLTSYSLYA 69
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 70 AVSVGLQT 77
>gi|336370746|gb|EGN99086.1| hypothetical protein SERLA73DRAFT_168625 [Serpula lacrymans var.
lacrymans S7.3]
Length = 858
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/336 (60%), Positives = 253/336 (75%), Gaps = 15/336 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 483 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 542
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI +HE RGDK I
Sbjct: 543 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPKKFQACQFLIKFHEDRGDKII 602
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ KPYI+G T Q ER+++LQ F+ + VNTIF+SKV DTS DLPE
Sbjct: 603 VFSDNVFALEAYAKKLGKPYIHGGTGQVERMRVLQWFQHDSNVNTIFLSKVGDTSIDLPE 662
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 663 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 721
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+E + Y T+DEQ +L+ VL A+E++AD E +A
Sbjct: 722 LIDQGYAFKVITHLDGLENLPDLVYRTKDEQIELISSVLLANESEADLGSDIRATEGDLA 781
Query: 507 GEVGGVS------GGFKRSGGTMASLSGADDAVYHE 536
G V G +R+ GT+ +LSGA Y E
Sbjct: 782 GTVTSKDFGQMKFPGAQRTTGTLTALSGAQHMSYVE 817
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D I FT+E+K++ G
Sbjct: 386 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTAESKERFAGE 445
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 446 SGIVVSTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 497
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH SRP+W++P +GHI LE+FSP+ A DFL+AI+EPV RP IHE ++
Sbjct: 100 LKPDHASRPIWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 159
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 160 AVSVGLQT 167
>gi|150864721|ref|XP_001383669.2| DNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149385977|gb|ABN65640.2| DNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 838
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/332 (59%), Positives = 251/332 (75%), Gaps = 11/332 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 481 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKIHDLNFLIGPKLYEANWMDLAQK 540
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 541 GHIANVQCAEVWCPMTSEFYQEYLKESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 600
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+QIL NF+ N ++NTIF+SKV DTS DLPE
Sbjct: 601 VFSDNVYALQEYALKLGKPFIYGSTPQQERMQILSNFQHNDQINTIFLSKVGDTSIDLPE 660
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 661 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 719
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDADEERVA 506
L++QGY++KVIT L+GME+ + YS+ E+ +LLQQVL +E D D ++
Sbjct: 720 LVDQGYAFKVITHLSGMEQLPDLAYSSPRERRELLQQVLLKNEDAAGLEIGDDVDTNFIS 779
Query: 507 GE--VGGVSGGFKRSGGTMASLSGADDAVYHE 536
+ + + R+ G++A L+G +D Y E
Sbjct: 780 NDTRMKLENANASRTTGSLAGLAGGEDMAYIE 811
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 384 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTSE 443
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS ++ + M +L+ +EWG ++LD+ VP A + V
Sbjct: 444 SGLVVSTYSMVANTRNRSHDSQKVMDFLRGREWGFIILDEVHVVPAAMFRRV 495
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
FG DY + + LKPDH SRP+W++P+G I LESFSP+ A DFLI IAEP+ RP HIHE
Sbjct: 102 FGKSDY-SYLKLKPDHFSRPIWMSPDGRIILESFSPLAEQAQDFLITIAEPISRPSHIHE 160
Query: 218 VHTIPAKMFRRV 229
P ++ V
Sbjct: 161 YRLTPYSLYAAV 172
>gi|390594292|gb|EIN03704.1| DNA helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 866
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/342 (59%), Positives = 253/342 (73%), Gaps = 21/342 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 490 LDEVHVVPAAMFRRVVTTIKAHAKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 549
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 550 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPKKFQACQFLIKYHEDRGDKII 609
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ K YI+G T Q ER++ILQ F+ +P VNTIF+SKV DTS DLPE
Sbjct: 610 VFSDNVYALEAYAKKLGKLYIHGGTGQVERMRILQYFQHSPAVNTIFLSKVGDTSIDLPE 669
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 670 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 728
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGYS+KVIT L G+E++ + Y +RDEQ +LL VL A+E++AD E +A
Sbjct: 729 LIDQGYSFKVITHLDGLEDQPDLVYKSRDEQIELLSSVLLANESEADLGSDIRAGEGDLA 788
Query: 507 GEVGGVSGGFK------------RSGGTMASLSGADDAVYHE 536
G V G R+ G++ +LSG Y E
Sbjct: 789 GTVTSKDFGVPTKSRAAAAAAPYRTSGSLTALSGGQHMSYIE 830
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K VLC S VSV QWK QF WS D I FT++ K+K G
Sbjct: 393 AGKTLVGITAACTIKKSCFVLCTSSVSVMQWKQQFMQWSNITDRQIAVFTADQKEKFAGE 452
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+++TYSM+++T RS +A + M +L ++EWG +LLD+ VP A + V
Sbjct: 453 SGIVISTYSMVANTHNRSHDAKKMMDFLTSREWGFILLDEVHVVPAAMFRRV 504
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH +RPLW++P +G I LE+FSP+ A DFL+AI+EPV RP +HE ++
Sbjct: 104 LKPDHAARPLWISPEDGSIILEAFSPIAEQAQDFLVAISEPVSRPAFLHEYKITSYSLYA 163
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 164 AVSVGLQT 171
>gi|242792361|ref|XP_002481937.1| TFIIH complex helicase Ssl2, putative [Talaromyces stipitatus ATCC
10500]
gi|218718525|gb|EED17945.1| TFIIH complex helicase Ssl2, putative [Talaromyces stipitatus ATCC
10500]
Length = 831
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/357 (57%), Positives = 258/357 (72%), Gaps = 22/357 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 457 LDEVHVVPASMFRKVTSSIACQAKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 516
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ + K LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 517 GHIAKVQCAEVWCPMTTEFYSEYMRESSRKAALLYIMNPRKFQACQFLIDYHERRGDKII 576
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 577 VFSDNVYALQRYALKLGKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 636
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 637 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ E V ++
Sbjct: 696 LVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSAEVENVVDDLFSERS 755
Query: 515 GFKRSG-------------GTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
G +R G T++ L+G +D Y E SR +K HPLFKK
Sbjct: 756 GAQRGGRAAAKKAVAKRSAATLSGLAGGEDMAYVEYNKSRNKQLKEKAQHHPLFKKI 812
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 360 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFKRS 419
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M WL +EWG+M+LD+
Sbjct: 420 TGIIVSTYSMVSQTRARSHDAQKMMDWLTQREWGLMILDE 459
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
+G KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 YGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAADFLTTIAEPLSRPVHLH 130
Query: 217 E 217
E
Sbjct: 131 E 131
>gi|345568577|gb|EGX51470.1| hypothetical protein AOL_s00054g169 [Arthrobotrys oligospora ATCC
24927]
Length = 838
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/338 (59%), Positives = 246/338 (72%), Gaps = 13/338 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V+ + +H KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 473 LDEVHVVPANIFRKVIHSIATHAKLGLTATLLREDDKIQDLNFLIGPKLYEANWMELSEQ 532
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM+ EFY+EYL KR L Y+MNP K++A Q+LI YHE+RGDK I
Sbjct: 533 GHIARVQCAEVWCPMTTEFYQEYLNETPRKRALFYIMNPRKFQACQFLIDYHEKRGDKVI 592
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL YA K+NKPYIYG T Q ER++ILQNF+ N +NT+F+SK+ DTS DLPE
Sbjct: 593 VFSDNVFALAAYARKLNKPYIYGGTPQQERLKILQNFQRNELINTVFLSKIGDTSLDLPE 652
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQ+SSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 653 ATCLIQVSSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTAEMYYSSKRQAF 711
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG--- 511
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ VL + +AD + E G
Sbjct: 712 LVDQGYAFKVITHLQGIENLPGLAYATPAERRELLQSVLLENSQNADVNSIEKETDGGFF 771
Query: 512 --VSGGFKRSG-------GTMASLSGADDAVYHESRFS 540
G +KRSG ++ LSG D Y E S
Sbjct: 772 DRTRGDYKRSGPLVKRNNAKLSGLSGGDTMAYMEQNAS 809
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WST + I FT+E K++ G
Sbjct: 376 AGKTLVGITAACTIKKSVVVLCTSSMSVVQWRNEFLKWSTINPDQIAIFTAENKERFRGD 435
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM+++++ RS ++ + M +L +EWG++LLD+
Sbjct: 436 AGIIVTTYSMVTNSRTRSHDSQKMMDFLMGREWGLLLLDE 475
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVH 219
+D + + +KPDH+SRP+W+ P NG I LESFSP+ A DFL AIAEP+ RP ++HE
Sbjct: 78 RDELSFLKMKPDHESRPMWINPRNGKIILESFSPLAPAAQDFLTAIAEPLSRPTYLHEYR 137
Query: 220 TIPAKMFRRV 229
P ++ V
Sbjct: 138 ITPHSLYAAV 147
>gi|260942042|ref|XP_002615187.1| hypothetical protein CLUG_05202 [Clavispora lusitaniae ATCC 42720]
gi|238851610|gb|EEQ41074.1| hypothetical protein CLUG_05202 [Clavispora lusitaniae ATCC 42720]
Length = 846
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/351 (58%), Positives = 256/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+RED+KI DLNFLIGPKLYEANW+EL ++
Sbjct: 491 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDEKIYDLNFLIGPKLYEANWMELAQK 550
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 551 GHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 610
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER+ ILQNF+ N +VNTIF+SKV DTS DLPE
Sbjct: 611 VFSDNVYALQEYALKLGKPFIYGSTPQQERMTILQNFQHNDQVNTIFLSKVGDTSIDLPE 670
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 671 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 729
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDADEERVA 506
L++QGY++KVIT L+GME + YS+ E+ +LLQQVL +E D D +
Sbjct: 730 LVDQGYAFKVITHLSGMESLPDLAYSSARERRELLQQVLLKNEDAAGVEVGDDEDTNFMP 789
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHE-SRFSNVK------HPLFKKF 550
+ R+ G++A L+G +D Y E S+ N + HPL +K
Sbjct: 790 KDRRHEMSSASRTAGSLAGLAGGEDMAYVEYSKNKNKELREQHHHPLIQKM 840
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 17/163 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 394 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFSSE 453
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA-- 152
G++V+TYSM+++T+ RS ++++ M +L +EWG ++LD+ VP A + V AA
Sbjct: 454 AGLVVSTYSMVANTRNRSHDSEKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHA 513
Query: 153 --------VPEDEFGAKDYRAQMVLKPD-HKSRPLWVAPNGHI 186
V EDE K Y ++ P +++ + +A GHI
Sbjct: 514 KLGLTATLVREDE---KIYDLNFLIGPKLYEANWMELAQKGHI 553
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH SRP+W++P +G I LESFSP+ A DFLI +AEP RP HIHE
Sbjct: 122 LKPDHFSRPIWISPVDGRIILESFSPLAEQAQDFLITVAEPRSRPSHIHEY--------- 172
Query: 228 RVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
+ S+ + L DD IA LN L
Sbjct: 173 ----AITSYSLYAAVSVGLETDDIIAVLNRL 199
>gi|322701630|gb|EFY93379.1| DNA repair helicase RAD25 [Metarhizium acridum CQMa 102]
Length = 827
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/328 (60%), Positives = 252/328 (76%), Gaps = 7/328 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 465 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 524
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY EYL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 525 GHIARVQCAEVWCPMPTEFYDEYLRAPSRKKNLLYIMNPRKFQACQYLINYHEARGDKII 584
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q ER+++L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 585 VFSDNVYALKAYALKLGKAFIYGGTGQPERLKVLENFQHNPLVNTLFLSKIGDTSLDLPE 644
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 645 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 703
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ ++T E+ +LLQ+VL +E+ DE+ +G +
Sbjct: 704 LVDQGYAFKVITQLANIEKTPGLAFATAGERRELLQKVLVENESMEDEDITDDLFHSGSM 763
Query: 510 G-GVSGGFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 764 GRKKKNGPRRTAGTLGELSGGQDMAYIE 791
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K
Sbjct: 367 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKGSVFTG 426
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ ++ RS++AD+ M++L +EWG+MLLD+
Sbjct: 427 STGIIVTTYSMVTQSRARSYDADKMMKFLTGREWGLMLLDE 467
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 81 FGDRDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 139
Query: 217 E 217
E
Sbjct: 140 E 140
>gi|255722173|ref|XP_002546021.1| DNA repair helicase RAD25 [Candida tropicalis MYA-3404]
gi|240136510|gb|EER36063.1| DNA repair helicase RAD25 [Candida tropicalis MYA-3404]
Length = 846
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 262/356 (73%), Gaps = 21/356 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 482 LDEVHVVPAQMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 541
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 542 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 601
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 602 VFSDNVYALQEYALKLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 661
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 662 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 720
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDAD----- 501
L++QGY++KVIT L+GME+ + YS+ E+ +LLQQVL +E DAD
Sbjct: 721 LVDQGYAFKVITHLSGMEQLPDLAYSSAREKRELLQQVLLKNEDAAGLEIGDDADTNFIS 780
Query: 502 -EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFKKF 550
E+R+ E GG RS G++A L+G +D Y E + HPL +K
Sbjct: 781 KEKRMRLEQERNGGGSSRSAGSLAGLAGGEDMAYIEYSKNKNKELKDSHHPLIQKM 836
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 385 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASE 444
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+ V A+
Sbjct: 445 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQ 491
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 54/95 (56%), Gaps = 14/95 (14%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPV 194
D +P A KN FG D+ + + LKPDH SRP+W++PN G I LESFSP+
Sbjct: 91 DYIPDAVSKN------------FGKGDF-SYLKLKPDHFSRPIWISPNDGRIILESFSPL 137
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
A DFLI IAEPV RP HIHE ++ V
Sbjct: 138 AEQAMDFLITIAEPVSRPSHIHEYRITAYSLYAAV 172
>gi|121718807|ref|XP_001276200.1| TFIIH complex helicase Ssl2, putative [Aspergillus clavatus NRRL 1]
gi|119404398|gb|EAW14774.1| TFIIH complex helicase Ssl2, putative [Aspergillus clavatus NRRL 1]
Length = 823
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/353 (58%), Positives = 262/353 (74%), Gaps = 18/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 456 LDEVHVVPASMFRKVTSAIATQAKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 516 GHIAKVQCAEVWCPMTTEFYSEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 576 VFSDNVYALERYARKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 636 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ ++T E+ +LLQ+V+ +ET A+ E V ++
Sbjct: 695 LVDQGYAFKVITHLQGIENLEGLAFATPAERRELLQEVMLQNETSAEVENVMDDLFSERS 754
Query: 510 ----GGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
G GG +RS T++ L+G +D Y E SR +K HPLF+K
Sbjct: 755 GGFKGKAKGGVRRSAATLSGLAGGEDMAYIEYNRSRNKQLKDKAGHHPLFRKM 807
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D + FTS+ K+K
Sbjct: 359 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDVAVFTSDNKEKFRRS 418
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+
Sbjct: 419 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDE 458
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 73 FGYKDF-SSLDLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLH 131
Query: 217 E 217
E
Sbjct: 132 E 132
>gi|146412918|ref|XP_001482430.1| hypothetical protein PGUG_05450 [Meyerozyma guilliermondii ATCC
6260]
Length = 840
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/334 (59%), Positives = 250/334 (74%), Gaps = 13/334 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 486 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKIYDLNFLIGPKLYEANWMDLAQK 545
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL + KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 546 GHIANVQCAEVWCPMTSEFYQEYLRETSRKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 605
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 606 VFSDNVYALQEYALKLEKPFIYGSTPQQERMKILQNFQHNDEINTIFLSKVGDTSIDLPE 665
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 666 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 724
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDADEERVA 506
L++QGY++KVIT L+GME+ + YS+ E+ +LLQ VL +E D D +
Sbjct: 725 LVDQGYAFKVITHLSGMEQLPDLAYSSPRERRELLQAVLLKNEDAAGLEVGDDLDTNFIT 784
Query: 507 GE----VGGVSGGFKRSGGTMASLSGADDAVYHE 536
E + RS G++A L+G +D Y E
Sbjct: 785 QERRNKIESEQSDAVRSTGSLAGLAGGEDMAYVE 818
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF WST + FTSE K+
Sbjct: 389 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWSTIQPENVATFTSENKEMFTSE 448
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS+++ + M +L ++EWG ++LD+ VP A + V AA
Sbjct: 449 SGLVVSTYSMVANTRNRSYDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAA 506
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGH---IFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
FG D+ + + LKPDH +RPLW++P G I LESFSP+ A DFLI IAEP+ RP H
Sbjct: 106 FGRLDF-SYLKLKPDHFTRPLWISPTGGRIIIILESFSPLAEQAQDFLITIAEPISRPSH 164
Query: 215 IHE 217
IHE
Sbjct: 165 IHE 167
>gi|190348816|gb|EDK41352.2| hypothetical protein PGUG_05450 [Meyerozyma guilliermondii ATCC
6260]
Length = 840
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/334 (59%), Positives = 250/334 (74%), Gaps = 13/334 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 486 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDDKIYDLNFLIGPKLYEANWMDLAQK 545
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL + KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 546 GHIANVQCAEVWCPMTSEFYQEYLRETSRKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 605
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 606 VFSDNVYALQEYALKLEKPFIYGSTPQQERMKILQNFQHNDEINTIFLSKVGDTSIDLPE 665
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 666 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 724
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------TDADEERVA 506
L++QGY++KVIT L+GME+ + YS+ E+ +LLQ VL +E D D +
Sbjct: 725 LVDQGYAFKVITHLSGMEQLPDLAYSSPRERRELLQAVLLKNEDAAGLEVGDDLDTNFIT 784
Query: 507 GE----VGGVSGGFKRSGGTMASLSGADDAVYHE 536
E + RS G++A L+G +D Y E
Sbjct: 785 QERRNKIESEQSDAVRSTGSLAGLAGGEDMAYVE 818
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF WST + FTSE K+
Sbjct: 389 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWSTIQPENVATFTSENKEMFTSE 448
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS+++ + M +L ++EWG ++LD+ VP A + V AA
Sbjct: 449 SGLVVSTYSMVANTRNRSYDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAA 506
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGH---IFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
FG D+ + + LKPDH +RPLW++P G I LESFSP+ A DFLI IAEP+ RP H
Sbjct: 106 FGRSDF-SYLKLKPDHFTRPLWISPTGGRIIIILESFSPLAEQAQDFLITIAEPISRPSH 164
Query: 215 IHE 217
IHE
Sbjct: 165 IHE 167
>gi|400602650|gb|EJP70252.1| DNA repair helicase rad25 [Beauveria bassiana ARSEF 2860]
Length = 816
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 250/327 (76%), Gaps = 6/327 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FRRV + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 456 LDEVHVVPANIFRRVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWC M EFY EYL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 516 GHIARVQCAEVWCAMPTEFYDEYLRAPSRKKNLLYIMNPRKFQACQYLINYHESRGDKII 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+++L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 576 VFSDNVYALKAYALKLGKAFIYGGTGQAERLKVLENFQHNPLVNTLFLSKIGDTSLDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 636 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFFSSKRQAF 694
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ ++T E+ +LLQ+VL +E DE+ +G +
Sbjct: 695 LVDQGYAFKVITQLANIEQTPGLAFATAAERRELLQKVLVENEGAEDEDITDDLFHSGTM 754
Query: 510 GGVSGGFKRSGGTMASLSGADDAVYHE 536
G +R+ GT+ LSG + Y E
Sbjct: 755 GRAQKRVRRTAGTLGELSGGQNMAYIE 781
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K
Sbjct: 358 AGKTLVGITAACTIKKGIIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKGSVFTG 417
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTYSM++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 418 STGVIVTTYSMVTQSRARSYDAEKMMKFLTGREWGLMLLDE 458
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG DY + +VLK DH++RPLW+ P G I LESFSP+ A DFLI IAEP+ RP +H
Sbjct: 81 FGDNDY-SYLVLKKDHRNRPLWIDPKKGRIILESFSPLAEQAQDFLITIAEPLSRPTFMH 139
Query: 217 E 217
E
Sbjct: 140 E 140
>gi|258571163|ref|XP_002544385.1| DNA repair helicase RAD25 [Uncinocarpus reesii 1704]
gi|237904655|gb|EEP79056.1| DNA repair helicase RAD25 [Uncinocarpus reesii 1704]
Length = 791
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/360 (57%), Positives = 260/360 (72%), Gaps = 30/360 (8%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 423 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 482
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A QYLI +HE RGDK I
Sbjct: 483 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQYLIKFHEDRGDKII 542
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 543 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNDQVNTIFLSKIGDTSLDLPE 602
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 603 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 661
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L +E+ G+ YST E+ +LLQ+V+ +ET A E V ++
Sbjct: 662 LVDQGYAFKVITHLQDIEKMDGLAYSTAAERRELLQEVMLQNETSAAVEEVVDDLFS--- 718
Query: 515 GFKRSGG----------------TMASLSGADDAVYHESRFSNVK--------HPLFKKF 550
+RSGG T++ L+G +D Y E+ S K HPLF+KF
Sbjct: 719 --ERSGGPRAKAAKKAAVKRSAATLSGLAGGEDMAYIETNKSRNKQLKEKVSHHPLFRKF 776
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D + I FTS+ K++
Sbjct: 326 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRS 385
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 386 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 425
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 172 DHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
DH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+HE
Sbjct: 50 DHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLHE 96
>gi|322707230|gb|EFY98809.1| DNA repair helicase RAD25 [Metarhizium anisopliae ARSEF 23]
Length = 827
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/328 (60%), Positives = 252/328 (76%), Gaps = 7/328 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 465 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 524
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY EYL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 525 GHIARVQCAEVWCPMPTEFYDEYLRAPSRKKNLLYIMNPRKFQACQYLINYHEARGDKII 584
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q ER+++L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 585 VFSDNVYALKAYALKLGKAFIYGGTGQPERLKVLENFQHNPLVNTLFLSKIGDTSLDLPE 644
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 645 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 703
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV-----AGEV 509
L++QGY++KVIT+LA +E+ G+ ++T E+ +LLQ+VL +E+ DE+ +G +
Sbjct: 704 LVDQGYAFKVITQLANIEKTPGLAFATAGERRELLQKVLVENESMEDEDITDDLFHSGSM 763
Query: 510 G-GVSGGFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 764 GRKKKKGPRRTAGTLGELSGGQDMAYIE 791
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K
Sbjct: 367 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKGSVFTG 426
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ ++ RS++AD+ M++L +EWG+MLLD+
Sbjct: 427 STGIIVTTYSMVTQSRARSYDADKMMKFLTGREWGLMLLDE 467
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + + LK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 81 FGDRDF-SYLDLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 139
Query: 217 E 217
E
Sbjct: 140 E 140
>gi|261202560|ref|XP_002628494.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis SLH14081]
gi|239590591|gb|EEQ73172.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis SLH14081]
gi|239612316|gb|EEQ89303.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis ER-3]
gi|327358169|gb|EGE87026.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis ATCC 18188]
Length = 833
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/361 (57%), Positives = 259/361 (71%), Gaps = 31/361 (8%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 463 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 522
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 523 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 582
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 583 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 642
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 643 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 701
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++
Sbjct: 702 LVDQGYAFKVITHLEGIENLEGLAYATPAERRELLQEVMLQNETSAAVEEVVDDLFS--- 758
Query: 515 GFKRSGG-----------------TMASLSGADDAVYHESRFSNVK--------HPLFKK 549
+RSGG T++ L+G +D Y E S K HPLFKK
Sbjct: 759 --ERSGGPKARGAAKKAAVKRSAATLSGLAGGEDMAYIEHNKSRNKQLREKAGQHPLFKK 816
Query: 550 F 550
Sbjct: 817 I 817
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 366 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRN 425
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 426 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 465
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 148 KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIA 206
K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IA
Sbjct: 70 KADVQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIA 128
Query: 207 EPVCRPEHIHE 217
EP+ RP H+HE
Sbjct: 129 EPLSRPTHLHE 139
>gi|430814591|emb|CCJ28199.1| unnamed protein product [Pneumocystis jirovecii]
Length = 801
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/359 (57%), Positives = 259/359 (72%), Gaps = 25/359 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T V +H KLGLTATL+REDDKI DLNFLIGPKLYEANWL+L ++
Sbjct: 439 LDEVHVVPAIMFRRVITTVAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWLDLAQK 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY EYL + KR+LLY+MNPNK++A Q+LI YHE+RGDK I
Sbjct: 499 GHIANVQCAEVWCPMTTEFYNEYLNETSRKRMLLYIMNPNKFQACQFLIDYHEKRGDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K +IYG TSQ ER++IL+NF+ N V TIF+SK+ DTS DLPE
Sbjct: 559 VFSDNVYALRAYALKLQKYFIYGGTSQHERMKILENFRYNDMVKTIFLSKIGDTSIDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAKK + +NAFFY+L+S+DTME+ YS KRQ F
Sbjct: 619 ATCLIQISSHYGSRRQEAQRLGRILRAKKRN-DQGFNAFFYSLISKDTMEVYYSVKRQAF 677
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L G+E + +ST EQ +LLQ+VL +E AD ++ + E
Sbjct: 678 LVDQGYAFKVITHLKGIENVPNLAFSTPAEQRELLQEVLLQNEDAADIDK-SDERENYYD 736
Query: 515 GF--------------KRSGGTMASLSGADDAVYHESRFSNVK---------HPLFKKF 550
F KRS G +++LSG +D Y E S K +P+ KKF
Sbjct: 737 NFMKKSKKELYNTTKVKRSIGNLSTLSGGNDFAYIEYNKSANKQLKDSVVSRNPIIKKF 795
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
GK+LVG+TA CT++K LVLC S VSV QWK QF WS I FTS+ K+K G
Sbjct: 342 TGKTLVGITAACTIKKSVLVLCTSSVSVIQWKQQFLQWSNIKSDDIAVFTSDNKEKFKGE 401
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++++TYSMI++T+ RS ++ + M +L ++EWG +LLD+
Sbjct: 402 SGVIISTYSMIANTRNRSHDSQKIMDFLTSREWGFLLLDE 441
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + LKPDH+SRPLW+ P +G I LE+FSP+ A DFLI IAEPV RP HIH
Sbjct: 35 FGENDFSYILTLKPDHESRPLWINPCDGKIILEAFSPLAEQAQDFLITIAEPVSRPVHIH 94
Query: 217 E 217
E
Sbjct: 95 E 95
>gi|71019971|ref|XP_760216.1| hypothetical protein UM04069.1 [Ustilago maydis 521]
gi|46099785|gb|EAK85018.1| hypothetical protein UM04069.1 [Ustilago maydis 521]
Length = 940
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/287 (66%), Positives = 236/287 (82%), Gaps = 1/287 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVLT +++H KLGLTATL+RED+KI +LNFL+GPKLYEANW++L +
Sbjct: 560 LDEVHVVPASMFRRVLTKIKAHSKLGLTATLVREDEKIDELNFLVGPKLYEANWMDLAAK 619
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL K+ K++LLY MNPNK++A Q+LI YHE RGDK I
Sbjct: 620 GHIATVQCAEVWCPMTPEFYREYLREKSRKKMLLYCMNPNKFQACQFLIDYHENRGDKII 679
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL YA K+ KP+I+G T+ ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 680 VFSDNVYALVAYAHKLKKPFIHGGTAHLERMRILQNFQHNPLVNTIFLSKVGDTSIDLPE 739
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 740 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTAEMFYSTKRQQF 798
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD 501
LI+QGY+++VIT L GM + G+ Y ++ EQ +LLQ VL A+E+DAD
Sbjct: 799 LIDQGYAFRVITHLVGMTDMPGLVYKSQAEQIELLQSVLIANESDAD 845
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D+ I FT++ K+K G
Sbjct: 463 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGA 522
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T KRS + + M +L+++EWG +LLD+
Sbjct: 523 SGIVVSTYSMVANTGKRSHTSQKMMNFLESREWGFILLDE 562
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
E F +D+ +M LK DH SRPLW++P+ GHI LE FSP+ A DFLIAIAEPV RP
Sbjct: 137 ELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIILEGFSPLAEQAQDFLIAIAEPVSRPA 195
Query: 214 HIHEVHTIPAKMFRRVLTIVQ 234
+IHE P ++ V +Q
Sbjct: 196 YIHEYKLTPYSLYAAVSVGLQ 216
>gi|212535202|ref|XP_002147757.1| TFIIH complex helicase Ssl2, putative [Talaromyces marneffei ATCC
18224]
gi|210070156|gb|EEA24246.1| TFIIH complex helicase Ssl2, putative [Talaromyces marneffei ATCC
18224]
Length = 832
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/357 (57%), Positives = 258/357 (72%), Gaps = 22/357 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 458 LDEVHVVPASMFRKVTSSIACQAKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 517
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ + K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 518 GHIAKVQCAEVWCPMTTEFYSEYMRESSRKAALLYIMNPRKFQACQFLINYHEKRGDKII 577
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 578 VFSDNVYALQRYALKLGKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 637
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 638 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAF 696
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A+ E V ++
Sbjct: 697 LVDQGYAFKVITHLQGIENLEGLAYATPSERRELLQEVMLQNETSAEVENVVDDLFAERS 756
Query: 515 GF-------------KRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
G KRS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 757 GGQRGGRAGAKKAIAKRSAATLSGLAGGEDMAYVEYNKSRNKQLKEKTQHHPLFKKI 813
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 361 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFIRWSNIDPGDIAIFTSDNKEKFKRS 420
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A + M WL +EWG+M+LD+
Sbjct: 421 TGIIVSTYSMVSQTRARSHDAQKMMDWLTQREWGLMILDE 460
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
+G KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 72 YGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLASQAADFLTTIAEPLSRPVHLH 130
Query: 217 E 217
E
Sbjct: 131 E 131
>gi|378728720|gb|EHY55179.1| DNA excision repair protein ERCC-3 [Exophiala dermatitidis
NIH/UT8656]
Length = 852
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/291 (66%), Positives = 231/291 (79%), Gaps = 1/291 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PAKMFR+V +++HCKLGLTATLLREDDKI DLNF+IGPKLYEANW+EL +
Sbjct: 466 LDEVHVVPAKMFRKVGENIRAHCKLGLTATLLREDDKITDLNFIIGPKLYEANWMELADQ 525
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPMS EFY+EY T K+ L Y+MNP KY+ QYLI YHE+RGDK I
Sbjct: 526 GHIAKVQCAEVWCPMSMEFYQEYQKETTRKQALYYIMNPVKYQVCQYLIDYHEKRGDKII 585
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDN+FAL+HYAV M KP+IYG TS ERI IL+NF+ N +NTIF+SK+ DTS DLPE
Sbjct: 586 VFSDNLFALQHYAVTMKKPFIYGDTSNQERISILENFQHNELINTIFLSKIGDTSLDLPE 645
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM+YS KRQ F
Sbjct: 646 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTTEMAYSAKRQAF 704
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV 505
L++QGY++K IT LAGM E G+ Y+T E+ +LL V+ ET AD E+V
Sbjct: 705 LVDQGYAFKTITHLAGMSEMPGLAYTTARERNELLAHVMLQQETAADVEKV 755
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA C ++K +VLC S +S QW ++FK WS + I F++ K + G
Sbjct: 369 AGKTLVGITAGCHIKKSIVVLCTSAMSSYQWANEFKKWSDVKEEDIAVFSASEKRRFTGD 428
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G+LVTTYSMI+ KR+++ Q M W+ +EWG+M+LD+ V AK
Sbjct: 429 AGVLVTTYSMITAGGKRAYDTQQMMDWVYRKEWGLMILDEVHVVPAK 475
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 9/68 (13%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN--------GHIFLESFSPVYRHAHDFLIAIAEPV 209
FG KD+ + + LKPDH++RPLW+ PN I LESFSP+ A D L IAEP
Sbjct: 78 FGDKDF-SWLSLKPDHENRPLWIDPNVSIGSKKGPKIILESFSPLAAQATDLLTTIAEPQ 136
Query: 210 CRPEHIHE 217
RP ++HE
Sbjct: 137 SRPTYLHE 144
>gi|384252657|gb|EIE26133.1| DNA repair helicase rad25 [Coccomyxa subellipsoidea C-169]
Length = 815
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/341 (60%), Positives = 256/341 (75%), Gaps = 11/341 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+V+ IV++HCKLGLTATL+RED++I+DLNFLIGPKLYEANWL+L +
Sbjct: 454 LDEVHVVPAQMFRKVIGIVKAHCKLGLTATLVREDERISDLNFLIGPKLYEANWLDLTRA 513
Query: 275 GFIARVQCAEVWCPMSPEFYREYL-VCKTSKRLLLYVMNPNKYRATQYLIAYHER-RGDK 332
G IA VQCAEVWCPM+ EFYREYL ++R LLYVMNPNK++A Q+LI YHE+ RGDK
Sbjct: 514 GHIANVQCAEVWCPMTKEFYREYLKKDNAARRQLLYVMNPNKFQACQFLIQYHEQVRGDK 573
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSDN+FAL+ YA ++ KP+IYG TS ER ++L FK + +V+T+F+SKV D S D+
Sbjct: 574 IIVFSDNIFALREYAQRLRKPFIYGGTSHQERTRVLAAFKRSAEVSTVFLSKVGDNSIDI 633
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAI----AEEYNAFFYTLVSQDTMEMSYS 448
PEANVLIQISSH GSRRQEAQRLGRILRAKKG A+E+NAFFYTLVS+DT EM YS
Sbjct: 634 PEANVLIQISSHAGSRRQEAQRLGRILRAKKGKPGSQGADEFNAFFYTLVSKDTQEMYYS 693
Query: 449 RKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE 508
KRQ+FLI+QGYS+KVIT L + STRDEQ +L +VLAA E +A E VA
Sbjct: 694 TKRQQFLIDQGYSFKVITNLLDAAGGASLQMSTRDEQLDVLAKVLAAGEDEAGVE-VADV 752
Query: 509 VGGVSGGFK----RSGGTMASLSGADDAVYHESRFSNVKHP 545
V+ K R+ G++A++SGA Y E + + P
Sbjct: 753 TDDVTRTKKALAQRTAGSLAAMSGAHGLTYMEYGTNKAQKP 793
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVG+TA ++K L L + VSV+QWKHQFKLW+ D I RFTS+ K+ G
Sbjct: 357 AGKSLVGITAAARIKKSVLCLVTNSVSVDQWKHQFKLWTNLQDHQISRFTSDQKELFAGV 416
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+ VTTY+M+S++ +RS E+ + M + ++EWG++LLD+
Sbjct: 417 SGVTVTTYTMVSYSGRRSEESARVMDEIASREWGLLLLDE 456
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%)
Query: 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
PLWV P+G IFLE+FSPVYR A+DFLIAIAEPVCRPE +HE P ++ V
Sbjct: 81 PLWVCPDGRIFLETFSPVYRQAYDFLIAIAEPVCRPECVHEYVLTPHSLYAAV 133
>gi|328858647|gb|EGG07759.1| hypothetical protein MELLADRAFT_85492 [Melampsora larici-populina
98AG31]
Length = 881
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/336 (59%), Positives = 249/336 (74%), Gaps = 15/336 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+ +++H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L +
Sbjct: 509 LDEVHVVPAAMFRRVVGTIKAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAAK 568
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL K+ KR LLY MNP K++A Q+LI +HE RGDK I
Sbjct: 569 GHIANVQCAEVWCPMTPEFYREYLREKSRKRNLLYCMNPQKFQACQFLIKFHEERGDKII 628
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ K YI+G T Q ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 629 VFSDNVYALEAYAKKLRKLYIHGGTPQVERMRILQNFQHNPLVNTIFLSKVGDTSIDLPE 688
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT E +S KRQ+F
Sbjct: 689 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSRDTQEFYFSTKRQQF 747
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD---EERVAGEV-- 509
LI+QGY++KVI+ L G+E + Y+T+DEQ +LLQ VL A+E+DAD + R+ ++
Sbjct: 748 LIDQGYAFKVISHLQGLENLPELVYATKDEQIELLQSVLLANESDADIGADVRMLDDIGG 807
Query: 510 ---------GGVSGGFKRSGGTMASLSGADDAVYHE 536
+ G +R G + LSG Y E
Sbjct: 808 KGFGGNGKGAAKNAGVRRVVGNLGGLSGGQSMSYIE 843
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA T+RK L LC SGVSV QW+ QF +WS D I FT+E K+K G
Sbjct: 412 AGKTLVGITAASTIRKSVLCLCTSGVSVMQWRQQFLMWSNIQDRQISVFTAETKEKFAGA 471
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++ KRS ++ + M +L ++EWG++LLD+ VP A + V
Sbjct: 472 SGIVVSTYSMVANRTKRSHDSQKMMDFLTSREWGLILLDEVHVVPAAMFRRV 523
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG---HIFLESFSPVYRHAHDFLI 203
E+ D P DY+ + LK DH SRPL+++PN +I LE+F P+ A DFLI
Sbjct: 105 EQSDIVFPP----GSDYK-YLNLKADHASRPLYISPNTASRNIILEAFHPLAAQAQDFLI 159
Query: 204 AIAEPVCRPEHIHE 217
++EPV RP HIHE
Sbjct: 160 TVSEPVSRPTHIHE 173
>gi|330791017|ref|XP_003283591.1| hypothetical protein DICPUDRAFT_96425 [Dictyostelium purpureum]
gi|325086451|gb|EGC39840.1| hypothetical protein DICPUDRAFT_96425 [Dictyostelium purpureum]
Length = 792
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/338 (57%), Positives = 251/338 (74%), Gaps = 17/338 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VLT+ ++HCKLGLTATLLRED+KI DLNFLIGPKLYEANWL+LQK
Sbjct: 441 LDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDEKIQDLNFLIGPKLYEANWLDLQKS 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A V C+EVWCPMS EFY+EYL+ + K+ LLY MNPNK+RA +YLI +HE+RGDK
Sbjct: 501 GFLANVSCSEVWCPMSAEFYKEYLINDSQCKKKLLYTMNPNKFRACEYLIKFHEQRGDKI 560
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA + K +IYGPTS ER+ IL F+ +PKV TIF+SKV DTS D+P
Sbjct: 561 IVFSDNVYALQKYAKGLGKYFIYGPTSGHERMSILSKFQHDPKVRTIFISKVGDTSIDIP 620
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V+IQ+SSH GSRRQEAQRLGRILR K + YNAFFY+LVS+DT EM YS KRQ+
Sbjct: 621 EATVIIQVSSHYGSRRQEAQRLGRILRPKPKSDG-LYNAFFYSLVSKDTQEMYYSTKRQQ 679
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVS 513
FLI+QGYS+KVI++L G++++ + Y+++ EQ +LL QVL E E + + ++
Sbjct: 680 FLIDQGYSFKVISELPGLDQDPTLKYTSKQEQLELLGQVLGEGEDSGKNETLEEDFDDIT 739
Query: 514 GG---------------FKRSGGTMASLSGADDAVYHE 536
G + +GG+M +LSGA+D Y E
Sbjct: 740 RGGTAKKQKPGTNPTAVSRTTGGSMKALSGANDVNYME 777
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSL G+TA CTV+K LVLC S VSVEQWK+QFKLWS ++ MI +FTS+ K+K
Sbjct: 344 AGKSLSGITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEEKMISKFTSDNKEKLCSL 403
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G+ +TTY+M++ +RS ++ + M + N+EWG++LLD+ VP A + V
Sbjct: 404 AGVTITTYTMVAFGGRRSADSLKIMNEITNREWGLVLLDEVHVVPAAMFRKV 455
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTI 221
D+ + LK D K+RPLWV P+GHIFLE+FSP+Y+ A DFL+AI+EPVCRP+ IHE
Sbjct: 63 DFSKKCGLKKDDKTRPLWVCPDGHIFLETFSPIYKQASDFLVAISEPVCRPQLIHEYQLT 122
Query: 222 PAKMFRRV 229
P ++ V
Sbjct: 123 PYSLYAAV 130
>gi|358058547|dbj|GAA95510.1| hypothetical protein E5Q_02165 [Mixia osmundae IAM 14324]
Length = 966
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/360 (58%), Positives = 259/360 (71%), Gaps = 27/360 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 590 LDEVHVVPANMFRRVVTTIKAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 649
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWC M+PEFYREYL KT KR+LLY MNPNK++A Q+LI YHE RGDK I
Sbjct: 650 GHIATVQCAEVWCNMTPEFYREYLREKTRKRMLLYCMNPNKFQACQFLIKYHEDRGDKII 709
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K YI+G T Q ER++IL +F+ NP VNTIF+SKV DTS DLPE
Sbjct: 710 VFSDNVFALEAYAKKLQKAYIHGGTPQVERMRILAHFQANPLVNTIFLSKVGDTSIDLPE 769
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ +NAFFY+LV++D EM YS KRQ+F
Sbjct: 770 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DTGFNAFFYSLVTRDCEEMYYSTKRQQF 828
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT+L G+E+ + Y ++ EQ +LLQ VL A+E++A+ E +
Sbjct: 829 LIDQGYAFKVITQLKGIEDMEDLVYKSKSEQIELLQSVLLANESEAELGTDIGFTEGDLP 888
Query: 507 GEVGG------VSGG--FKRSGGTMASLSGADDAVYHESRFS----------NVKHPLFK 548
G V GG KR G++ +LSGA Y E S + +H LFK
Sbjct: 889 GTVTSKDFKQPAKGGAVVKRVMGSLTALSGAQSMSYMEQARSKNKALAKESADSRHKLFK 948
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA CT++K LVLC SGVSV QW+ QF +WS + I FT++ K+K G
Sbjct: 493 AGKTLVGITAACTIKKSVLVLCTSGVSVMQWRQQFLMWSNIQERQISVFTADHKEKFAGA 552
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++ QKRS +A + M +L ++EWG +LLD+
Sbjct: 553 SGIVVSTYSMVANRQKRSHDAQKMMDFLTSREWGFILLDE 592
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 167 MVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
+ LKPDH RPL+V+P+ G I LE+F + A DFL+AIAEPV RP HIHE P +
Sbjct: 208 LPLKPDHAFRPLYVSPSSGAIILEAFHALASQAQDFLVAIAEPVSRPAHIHEYKLTPYSL 267
Query: 226 FRRV 229
+ V
Sbjct: 268 YAAV 271
>gi|453083736|gb|EMF11781.1| TFIIH basal transcription factor complex helicase XPB subunit
[Mycosphaerella populorum SO2202]
Length = 847
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/332 (60%), Positives = 249/332 (75%), Gaps = 11/332 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV +++H KLGLTATLLREDDKI DLNFLIGPKLYEANWL+L +
Sbjct: 476 LDEVHVVPAEMFRRVTERIKTHSKLGLTATLLREDDKIKDLNFLIGPKLYEANWLQLSEE 535
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G IARVQCAEVWCPM+ EFY+EYL KT+ KR LL MNP KY+A Q+LI +HE+RGDK
Sbjct: 536 GHIARVQCAEVWCPMTTEFYKEYLDAKTTNKRSLLSTMNPRKYQACQFLIDFHEKRGDKV 595
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA + KPYIYG TSQ ER +LQNF+ N V++IF+SK+ DTS DLP
Sbjct: 596 IVFSDNVYALQKYATGLTKPYIYGDTSQREREIVLQNFQQNDAVSSIFLSKIGDTSLDLP 655
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ
Sbjct: 656 EATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTNEMYYSSKRQA 714
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV---G 510
FL++QGY++KVIT L G+E+ + ++T+ E+ LL VL SET D E + ++
Sbjct: 715 FLVDQGYAFKVITHLNGIEKMPNLAFNTQQERMTLLTDVLLQSETAGDVEDIQDDLFSDR 774
Query: 511 GVS------GGFKRSGGTMASLSGADDAVYHE 536
VS G +R GT++SL+GAD+ Y E
Sbjct: 775 NVSRSKKKGSGVRRQAGTLSSLAGADNMAYME 806
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD---KP 94
AGK+LVG+TA CTV+K A+VLC S +S QWK +FK WS + I FTS KD
Sbjct: 377 AGKTLVGITAACTVKKSAIVLCTSAMSAVQWKEEFKKWSNINPDDIAIFTSGEKDILNLS 436
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+++ TYSM++ +R+ ++ + M ++ ++EWG+M+LD+
Sbjct: 437 KKAGVIICTYSMVTQNTRRAHDSKKVMDFITSREWGLMVLDE 478
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH RPLW+ P NG + LE+F+P ++ A +FLI IAEP R ++HE P +F
Sbjct: 90 LKPDHHLRPLWIEPKNGKVVLETFAPNFKQAQNFLINIAEPQSRTTNMHEYTISPHSLFA 149
Query: 228 RVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKL 263
V +GLT E D I DL K+
Sbjct: 150 AV--------SVGLT-----EKDIIRDLELFSKTKV 172
>gi|398393830|ref|XP_003850374.1| hypothetical protein MYCGRDRAFT_110466 [Zymoseptoria tritici
IPO323]
gi|339470252|gb|EGP85350.1| hypothetical protein MYCGRDRAFT_110466 [Zymoseptoria tritici
IPO323]
Length = 853
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/344 (58%), Positives = 248/344 (72%), Gaps = 11/344 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV +++H KLGLTATLLREDDKI DLNFLIGPKLYEANWL+L +
Sbjct: 486 LDEVHVVPADMFRRVTERIKTHSKLGLTATLLREDDKIKDLNFLIGPKLYEANWLQLSEE 545
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G IARVQCAEVWCPM+ EFY EYL KT+ KR LL MNP KY+A Q+LI +HERRGDK
Sbjct: 546 GHIARVQCAEVWCPMTTEFYSEYLQAKTTNKRSLLSTMNPRKYQACQFLIDFHERRGDKV 605
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA M KPYIYG TSQ ER +LQNF+ N V+T+F+SK+ DTS DLP
Sbjct: 606 IVFSDNVYALEKYATGMTKPYIYGDTSQREREVVLQNFQQNDAVSTVFLSKIGDTSLDLP 665
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ
Sbjct: 666 EATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTNEMYYSSKRQA 724
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG-- 511
FL++QGY++KVIT L G++ + ++T++E+ LLQ VL S+T E + ++
Sbjct: 725 FLVDQGYAFKVITHLNGIDRMPNLAFNTQNERMTLLQDVLIQSDTTGGVEDIQDDLFSDK 784
Query: 512 -------VSGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFK 548
G +R GT++SL+G +D Y E +N L K
Sbjct: 785 NQARQKKKGSGVRRQAGTLSSLAGGEDMAYMEYSKNNANKALAK 828
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CTV+K A+VLC S +S QWK +FK WS + I FTS K+K
Sbjct: 389 AGKTLVGITAACTVKKSAIVLCTSAMSAVQWKEEFKKWSNINPEDIAIFTSGEKEKLNHK 448
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+++ TYSM++ +R+ ++ Q M ++ ++EWG+M+LD+
Sbjct: 449 AGVIICTYSMVTQNTRRAHDSKQVMDFITSREWGLMVLDE 488
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LK DH RPLW+ P NG + LE+F+P ++ A +FLI IAEP R ++HE P +F
Sbjct: 101 LKADHHLRPLWIDPQNGKVVLETFAPSFKQAQNFLINIAEPQSRTTNMHEYTISPHSLFA 160
Query: 228 RVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKL 263
V +GLT E D I DL K+
Sbjct: 161 AV--------SVGLT-----EQDIIRDLELFSKTKV 183
>gi|296413360|ref|XP_002836382.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630199|emb|CAZ80573.1| unnamed protein product [Tuber melanosporum]
Length = 826
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 253/330 (76%), Gaps = 9/330 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA++FR+V+ + +H KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 460 LDEVHVVPAQIFRKVVHSIATHSKLGLTATLLREDDKITDLNFLIGPKLYEANWMELAEQ 519
Query: 275 GFIARVQCAEVWCPMSPEFYREYLV-CKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G IA+VQCAEVWCPM+PEFY EYL K++L Y+MNP K++ATQ+LI YHE+RGDK
Sbjct: 520 GHIAKVQCAEVWCPMTPEFYSEYLQEPDARKKVLHYIMNPRKFQATQFLIDYHEKRGDKI 579
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA+K+NK +IYG T Q ER++IL+NF+LN +VNTIF+SK+ DTS DLP
Sbjct: 580 IVFSDNVYALRAYALKLNKAFIYGDTPQQERLRILENFQLNDQVNTIFLSKIGDTSLDLP 639
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ
Sbjct: 640 EATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTAEMYYSSKRQA 698
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQV-LAASET------DADEERVA 506
FL++QGY++KVIT L G+E+ G+ Y+T E+ +LL +V L SE D D +++
Sbjct: 699 FLVDQGYAFKVITHLQGIEQLPGLAYATVAERKELLAEVMLQNSEAGQQEGDDFDGAKLS 758
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
G ++R+ G ++ L+G DD Y E
Sbjct: 759 YNAGRKGARYRRTTGRLSELAGGDDMAYIE 788
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VL S +SV QW+ +F W+ + I FTSE K+K G
Sbjct: 363 AGKTLVGITAACTIKKSVVVLATSSMSVVQWRQEFIKWTNINPDAIAIFTSENKEKFRGD 422
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++++ RS ++ + M +LQ++EWG+++LD+
Sbjct: 423 AGIIVSTYSMVTNSRNRSHDSQKMMDFLQSREWGLLILDE 462
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F +D+ + + +K DH+SRPLW+ P +G I LESFSP+ A DFL IAEP+ RP ++H
Sbjct: 85 FSKQDF-SYLKMKLDHESRPLWINPESGVIVLESFSPLAGQAQDFLTTIAEPLSRPTYLH 143
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 144 EYKLTPHSLYAAV 156
>gi|403173052|ref|XP_003332158.2| DNA excision repair protein ERCC-3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375170107|gb|EFP87739.2| DNA excision repair protein ERCC-3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 980
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/338 (59%), Positives = 250/338 (73%), Gaps = 17/338 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+ +++H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L +
Sbjct: 602 LDEVHVVPAAMFRRVVGTIKAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAAK 661
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL K+ K+ LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 662 GHIANVQCAEVWCPMTPEFYREYLREKSRKKNLLYCMNPQKFQACQFLIKYHEDRGDKII 721
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ K YI+G T Q ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 722 VFSDNVYALEAYAKKLRKLYIHGGTPQVERMRILQNFQHNPLVNTIFLSKVGDTSIDLPE 781
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT E +S KRQ+F
Sbjct: 782 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSRDTQEFYFSTKRQQF 840
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA----------DEER 504
LI+QGY++KVI+ L G+E + YS+++EQ +LLQ VL A+E+DA D+ R
Sbjct: 841 LIDQGYAFKVISHLQGLENLPDLVYSSKEEQIELLQSVLLANESDAEIGTDVKNFGDDLR 900
Query: 505 VAGE------VGGVSGGFKRSGGTMASLSGADDAVYHE 536
+ +G G KR G +++LSG Y E
Sbjct: 901 GPNDRQGNKRIGMAGAGVKRIVGNLSALSGGQSMSYIE 938
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA T+RK L LC SGVSV QW+ QF +WS D I FT++ K+K G
Sbjct: 505 AGKTLVGITAASTIRKSVLCLCTSGVSVMQWRQQFLMWSNIQDRQISVFTADQKEKFAGA 564
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++ KRS ++ + M +L ++EWG++LLD+ VP A + V
Sbjct: 565 SGIVVSTYSMVANRTKRSHDSQKMMDFLTSREWGLILLDEVHVVPAAMFRRV 616
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 134 LDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN---GHIFLES 190
D + N + + D DYR + LK DH SRPL+++PN I LE+
Sbjct: 178 FDQNISTEQNMNSDAQGDFIATDFPAGCDYR-YLSLKADHTSRPLYISPNMATRTIILEA 236
Query: 191 FSPVYRHAHDFLIAIAEPVCRPEHIHE 217
F P+ A DFLI IAEPV RP HIHE
Sbjct: 237 FHPLASQAQDFLITIAEPVSRPSHIHE 263
>gi|169616097|ref|XP_001801464.1| hypothetical protein SNOG_11221 [Phaeosphaeria nodorum SN15]
gi|111060600|gb|EAT81720.1| hypothetical protein SNOG_11221 [Phaeosphaeria nodorum SN15]
Length = 804
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/330 (60%), Positives = 245/330 (74%), Gaps = 11/330 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F++V + SH KLGLTATLLREDDKI DLNFLIGPKLYEANW EL ++G
Sbjct: 444 EVHVVPANIFKKVTYEIASHAKLGLTATLLREDDKIDDLNFLIGPKLYEANWQELSEQGH 503
Query: 277 IARVQCAEVWCPMSPEFYREYL-VCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IARVQCAEVWC M+PEFY E+L T KR LL +MNP K++A Q+LI YHE RGDK IV
Sbjct: 504 IARVQCAEVWCQMTPEFYTEWLKPSTTQKRALLSIMNPRKFQACQFLINYHESRGDKIIV 563
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
FSDNV+AL+ YA K+NK +IYG T Q+ER+ IL+NF+ NP VNTIF+SK+ DTS DLPEA
Sbjct: 564 FSDNVYALEKYAKKLNKVFIYGATPQAERLTILENFQHNPNVNTIFLSKIGDTSLDLPEA 623
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
LIQ+SSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ FL
Sbjct: 624 TCLIQVSSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAFL 682
Query: 456 INQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV--- 512
++QGY++KVIT+L GME+ + ++T E+ +LL VL A + D EER+ G+ G
Sbjct: 683 VDQGYAFKVITRLEGMEQSTDLAFATPSERRELLMDVLLARDEDGKEERIEGDAFGTNFA 742
Query: 513 SG------GFKRSGGTMASLSGADDAVYHE 536
SG G +R+ GT++ SG Y E
Sbjct: 743 SGKGKNKKGVRRAAGTLSEFSGGQTMAYAE 772
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA C V+K +VLC S +SV QW+ +F WS + + FT++ K+ P
Sbjct: 345 AGKTLVGITAACGVKKSVIVLCTSAMSVVQWRAEFIKWSNINPEDVAVFTADNKNSFPRN 404
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMIS+ +KRS++A++ M++++++EWG+++ D+
Sbjct: 405 AGIIISTYSMISNARKRSYDAEKVMEFIRSREWGLLIADE 444
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LKPDH +RPLWV G I LESF ++ A DFLI IAEP R +HE +F
Sbjct: 74 LKPDHYNRPLWVNDAGGIILESFHALFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAA 133
Query: 229 V 229
V
Sbjct: 134 V 134
>gi|408399632|gb|EKJ78730.1| hypothetical protein FPSE_01098 [Fusarium pseudograminearum CS3096]
Length = 825
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/328 (59%), Positives = 250/328 (76%), Gaps = 7/328 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 467 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 526
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY +YL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 527 GHIARVQCAEVWCPMPTEFYDQYLKAPSRKKGLLYIMNPRKFQACQYLINYHESRGDKII 586
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 587 VFSDNVYALKAYALKLQKAFIYGGTGQAERLQVLENFQHNPNVNTLFLSKIGDTSLDLPE 646
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 647 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 705
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET-DADEERVAGEVGGVS 513
L++QGY++KVIT+LA +E+ G+ ++ E+ +LLQ+VL +E+ + D+ G
Sbjct: 706 LVDQGYAFKVITQLANIEKTPGLAFADVSERRELLQKVLVENESMEEDDPNDDMFHQGTM 765
Query: 514 G-----GFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 766 GRRKKKGARRTAGTLGELSGGQDMAYIE 793
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K+
Sbjct: 369 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTG 428
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTY+M++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 429 STGIIVTTYAMVTQSRARSYDAEKMMKFLTGREWGLMLLDE 469
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI I+EP+ RP +H
Sbjct: 82 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITISEPLSRPTFMH 140
Query: 217 E 217
E
Sbjct: 141 E 141
>gi|342885823|gb|EGU85775.1| hypothetical protein FOXB_03623 [Fusarium oxysporum Fo5176]
Length = 825
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/328 (59%), Positives = 250/328 (76%), Gaps = 7/328 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 467 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 526
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY +YL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 527 GHIARVQCAEVWCPMPTEFYDQYLKAPSRKKGLLYIMNPRKFQACQYLINYHESRGDKII 586
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 587 VFSDNVYALKAYALKLQKAFIYGGTGQAERLQVLENFQHNPNVNTLFLSKIGDTSLDLPE 646
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 647 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 705
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET-DADEERVAGEVGGVS 513
L++QGY++KVIT+LA +E+ G+ ++ E+ +LLQ+VL +E+ + D+ G
Sbjct: 706 LVDQGYAFKVITQLANIEKTPGLAFADVSERRELLQKVLVENESMEEDDPNDDMFHQGTM 765
Query: 514 G-----GFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 766 GRKKKKGARRTAGTLGELSGGQDMAYIE 793
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K+
Sbjct: 369 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTG 428
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTY+M++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 429 STGIIVTTYAMVTQSRARSYDAEKMMKFLTGREWGLMLLDE 469
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI I+EP+ RP +H
Sbjct: 82 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITISEPLSRPTFMH 140
Query: 217 E 217
E
Sbjct: 141 E 141
>gi|66828931|ref|XP_647819.1| transcription factor IIH subunit [Dictyostelium discoideum AX4]
gi|74955815|sp|O00835.1|ERCC3_DICDI RecName: Full=TFIIH basal transcription factor complex helicase
repB subunit; AltName: Full=DNA excision repair
cross-complementing protein-3 homolog; AltName: Full=DNA
repair helicase repB; AltName: Full=DNA repair protein B
gi|2058508|gb|AAB62732.1| RepB [Dictyostelium discoideum]
gi|60469985|gb|EAL67966.1| transcription factor IIH subunit [Dictyostelium discoideum AX4]
Length = 800
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/353 (56%), Positives = 256/353 (72%), Gaps = 19/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VLT+ ++HCKLGLTATLLRED+KI DLNFLIGPKLYEANWL+LQK
Sbjct: 443 LDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDEKIQDLNFLIGPKLYEANWLDLQKA 502
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A V C+EVWCPM+ EFY+EYL+ + K+ LLY MNPNK+RA +YLI +HE+RGDK
Sbjct: 503 GFLANVSCSEVWCPMTAEFYKEYLINDSQGKKKLLYTMNPNKFRACEYLIRFHEQRGDKI 562
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA + + +IYGPTS ER+ IL F+ +P V TIF+SKV DTS D+P
Sbjct: 563 IVFSDNVYALQKYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIP 622
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V+IQ+SSH GSRRQEAQRLGRILR K + YNAFFY+LVS+DT EM YS KRQ+
Sbjct: 623 EATVIIQVSSHYGSRRQEAQRLGRILRPKPKSDG-LYNAFFYSLVSKDTQEMYYSTKRQQ 681
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVS 513
FLI+QGYS+KVI++L G+++E + YS++ +Q LL QVL E E + + ++
Sbjct: 682 FLIDQGYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDIT 741
Query: 514 GGFKRS-----------GGTMASLSGADDAVYHESRFSNV------KHPLFKK 549
G K+S GG+ +LSG +D Y E + + +H LFK+
Sbjct: 742 RGAKKSKSSAPTVSRTTGGSTRALSGGNDMNYMEYQAPAIYKSIPTQHALFKQ 794
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSL G+TA CTV+K LVLC S VSVEQWK+QFKLWS ++ I +FTS+ K+K
Sbjct: 346 AGKSLSGITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNV 405
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G+ +TTY+M++ +RS E+ + M + N+EWG++LLD+ VP A + V
Sbjct: 406 AGVTITTYTMVAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKV 457
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTI 221
DY + +LK D+KSRP+WV P+GHIFLE+FS +Y+ A DFL+AIAEPVCRP++IHE
Sbjct: 65 DYSKRCILKQDNKSRPIWVCPDGHIFLETFSAIYKQASDFLVAIAEPVCRPQNIHEYQLT 124
Query: 222 PAKMFRRV 229
P ++ V
Sbjct: 125 PYSLYAAV 132
>gi|302916051|ref|XP_003051836.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732775|gb|EEU46123.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 802
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/329 (59%), Positives = 252/329 (76%), Gaps = 8/329 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 442 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 501
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY +YL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 502 GHIARVQCAEVWCPMPTEFYDQYLKAPSRKKGLLYIMNPRKFQACQYLINYHESRGDKII 561
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 562 VFSDNVYALKAYALKLQKAFIYGGTGQAERLQVLENFQHNPNVNTLFLSKIGDTSLDLPE 621
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 622 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 680
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET----DADEERV-AGEV 509
L++QGY++KVIT+LA +E+ G+ ++ E+ +LLQ+VL +E+ D +++ G +
Sbjct: 681 LVDQGYAFKVITQLANIEKTPGLAFADVSERRELLQKVLVENESMEEDDPNDDLFHQGTM 740
Query: 510 G--GVSGGFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 741 GRKKKKKGARRTAGTLGELSGGQDMAYIE 769
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K+
Sbjct: 344 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTG 403
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTY+M++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 404 STGIIVTTYAMVTQSRARSYDAEKMMRFLTGREWGLMLLDE 444
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI IAEP+ RP +H
Sbjct: 57 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITIAEPLSRPTFMH 115
Query: 217 E 217
E
Sbjct: 116 E 116
>gi|46125805|ref|XP_387456.1| hypothetical protein FG07280.1 [Gibberella zeae PH-1]
Length = 872
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/328 (59%), Positives = 250/328 (76%), Gaps = 7/328 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKL+EANW+EL K+
Sbjct: 467 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLFEANWMELSKQ 526
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY +YL + K+ LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 527 GHIARVQCAEVWCPMPTEFYDQYLKAPSRKKGLLYIMNPRKFQACQYLINYHESRGDKII 586
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 587 VFSDNVYALKAYALKLQKAFIYGGTGQAERLQVLENFQHNPNVNTLFLSKIGDTSLDLPE 646
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 647 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSSKRQAF 705
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET-DADEERVAGEVGGVS 513
L++QGY++KVIT+LA +E+ G+ ++ E+ +LLQ+VL +E+ + D+ G
Sbjct: 706 LVDQGYAFKVITQLANIEKTPGLAFADVSERRELLQKVLVENESMEEDDPNDDMFHQGTM 765
Query: 514 G-----GFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT+ LSG D Y E
Sbjct: 766 GRRKKKGARRTAGTLGELSGGQDMAYIE 793
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS + I FTS++K+
Sbjct: 369 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTG 428
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTY+M++ ++ RS++A++ M++L +EWG+MLLD+
Sbjct: 429 STGIIVTTYAMVTQSRARSYDAEKMMKFLTGREWGLMLLDE 469
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + +VLK DH++RPLW+ P G I LESF+P+ A DFLI I+EP+ RP +H
Sbjct: 82 FGDRDF-SYLVLKKDHQNRPLWIDPQKGRIILESFNPLAEQAQDFLITISEPLSRPTFMH 140
Query: 217 E 217
E
Sbjct: 141 E 141
>gi|443918514|gb|ELU38961.1| DNA repair helicase RAD25 [Rhizoctonia solani AG-1 IA]
Length = 823
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/349 (57%), Positives = 256/349 (73%), Gaps = 23/349 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+T +++H KLGLTATL+REDDKI+DLN++IGPKLYEANW++L +
Sbjct: 439 LDEVHVVPANMFRKVITTIKAHSKLGLTATLVREDDKISDLNYMIGPKLYEANWMDLSAK 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFY EYL K+ KR+LLY MNP K+++ Q+LI +HE RGDK I
Sbjct: 499 GHIANVQCAEVWCPMTPEFYHEYLREKSRKRMLLYCMNPRKFQSCQFLIKFHEGRGDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+NKP+I G TSQ ER+++L +F+ +PKVNTIF+SKV DTS DLPE
Sbjct: 559 VFSDNVYALEAYAKKLNKPFICGSTSQQERMRVLNHFQHSPKVNTIFLSKVGDTSIDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 619 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQQF 677
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--EERVAGEVGGV 512
L++QGY++KVIT LAGM+E+ + Y +R EQ +L+ VL SE AD ++ G++ V
Sbjct: 678 LVDQGYAFKVITHLAGMDEDPELVYKSRAEQLELMSAVLLESEDKADLGDKMAKGDLDSV 737
Query: 513 -------------------SGGFKRSGGTMASLSGADDAVYHE-SRFSN 541
R G++ +LSGA Y E SR +N
Sbjct: 738 MRRGVGGGRGGRFGGGGGAGPSVVRQSGSLGALSGAQQMAYMERSRGAN 786
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVL SGVSV QWK +F WS D IC FT++ K+K G
Sbjct: 342 AGKTLVGITAACTIKKSTLVLATSGVSVMQWKREFMQWSNITDKQICVFTADQKEKFAGE 401
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSMI++T RS E+ + M +L ++EWG +LLD+
Sbjct: 402 SGIVVSTYSMIANTTNRSHESKKMMDFLTSREWGFILLDE 441
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCR 211
LKPDH SRPLW++P + HI LE FSP+ A DFL+AI+EP+ R
Sbjct: 116 LKPDHASRPLWISPEDNHIILEGFSPIAEQAQDFLVAISEPISR 159
>gi|302793029|ref|XP_002978280.1| hypothetical protein SELMODRAFT_418040 [Selaginella moellendorffii]
gi|300154301|gb|EFJ20937.1| hypothetical protein SELMODRAFT_418040 [Selaginella moellendorffii]
Length = 747
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/357 (56%), Positives = 254/357 (71%), Gaps = 24/357 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 388 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKN 447
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE-RRGDKT 333
G+IA VQCAEVWCPM+ EFY EYL + K+ LYVMNPNK+RA ++L+ +HE +RGDK
Sbjct: 448 GYIANVQCAEVWCPMTKEFYAEYLKKENKKQQALYVMNPNKFRACEFLVRFHEQQRGDKI 507
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDN+FAL+ YA K+ KP+IYGPTS ER +IL FK +P VNTIF+SKV D S D+P
Sbjct: 508 IVFSDNLFALREYATKLKKPFIYGPTSHHERTKILYAFKHSPDVNTIFLSKVGDNSIDIP 567
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAK-------KGAIAEEYNAFFYTLVSQDTMEMS 446
EANV+IQISSH GSRRQEAQRLGRILRAK +G +EEYNAFFY+LVS DT EM
Sbjct: 568 EANVIIQISSHAGSRRQEAQRLGRILRAKGKPSDRVRGG-SEEYNAFFYSLVSTDTQEMY 626
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KV+T L + + YS +Q LL +VL A E E++
Sbjct: 627 YSSKRQQFLIDQGYSFKVLTNLPPPDSGEDLGYSKLQDQMDLLSKVLNAGEDAVGVEKLE 686
Query: 507 GEVGGVSG-GFKRSGGTMASLSGADDAVYHE--------------SRFSNVKHPLFK 548
+ ++ RS G+M+++SG +Y E SR N +H LFK
Sbjct: 687 HDADDITNLKIHRSAGSMSAMSGGKGRLYTEFSTGGGGGGGSRGKSRDPNKRHNLFK 743
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGV+A C +R+ L L + VSV+QW QFKLWST D ICRFTS++KDK G
Sbjct: 291 AGKSLVGVSAACRIRRSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKDKFKGN 350
Query: 98 G-ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
++VTTY+M++ KRS E+++ ++ ++++EWG++L+D+
Sbjct: 351 ACVIVTTYNMVAFKGKRSEESEKVIELIRSREWGLLLMDE 390
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 10/95 (10%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHT 220
KD+ A + LK DH RP+ V +G IFLE+FSP+Y+ A+DFLIA+AEPVCRPEH+HE +
Sbjct: 43 KDFSA-LELKSDHDRRPILVGCDGRIFLETFSPLYKQAYDFLIAVAEPVCRPEHMHEYNL 101
Query: 221 IPAKMF---------RRVLTIVQSHCKLGLTATLL 246
P ++ V+T+++ K L +T+L
Sbjct: 102 TPHSLYAAVSFGLETSAVITVLERLSKAKLPSTVL 136
>gi|392594902|gb|EIW84226.1| DNA helicase [Coniophora puteana RWD-64-598 SS2]
Length = 861
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/359 (57%), Positives = 260/359 (72%), Gaps = 25/359 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 486 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 545
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI +HE RGDK I
Sbjct: 546 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPKKFQACQFLIKFHEDRGDKII 605
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA K+ KPYI+G T Q ER+++LQ F+ + VNTIF+SKV DTS DLPE
Sbjct: 606 VFSDNVYALKAYAEKLGKPYIHGGTGQVERMRVLQWFQHDSNVNTIFLSKVGDTSIDLPE 665
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 666 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 724
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETD--------ADEERVA 506
LI+QGY++KVIT L G++ + Y T+DEQ +L+ VL A+E++ ADE +A
Sbjct: 725 LIDQGYAFKVITHLDGLDNLPNLVYKTKDEQIELISSVLLANESEADLGSDIRADEGDLA 784
Query: 507 GEVGGVSGG-------FKRSGGTMASLSGADDAVYHE-SRFSNVK--------HPLFKK 549
G V G R+ G++ +LSG Y E S+ +N K H LF K
Sbjct: 785 GTVTSKDFGDPSKFPTTYRTTGSITALSGGQYMSYAEQSKSANKKLAREIAPRHKLFAK 843
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K L LC S VSV QWK QF WS D I FT++ K++ G
Sbjct: 389 AGKTLVGITAACTIKKSCLCLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTADQKERFAGE 448
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+++TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 449 SGIVISTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 500
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH SRPLW++P +GHI LE+FSP+ A DFL+AI+EPV RP IHE ++
Sbjct: 103 LKPDHASRPLWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 162
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 163 AVSVGLQT 170
>gi|443897666|dbj|GAC75006.1| RNA pRNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, 3'-5' helicase subunit
SSL2olymerase II transcription initiation [Pseudozyma
antarctica T-34]
Length = 925
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/287 (66%), Positives = 235/287 (81%), Gaps = 1/287 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVLT +++H KLGLTATL+RED+KI +LNFL+GPKLYEANW++L +
Sbjct: 553 LDEVHVVPASMFRRVLTKIKAHSKLGLTATLVREDEKIDELNFLVGPKLYEANWMDLAAK 612
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL K+ K++LLY MNP K++A Q+LI YHE RGDK I
Sbjct: 613 GHIATVQCAEVWCPMTPEFYREYLREKSRKKMLLYCMNPKKFQACQFLIDYHENRGDKII 672
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ KP+I+G T+ ER++ILQNF+ NP VNTIF+SKV DTS DLPE
Sbjct: 673 VFSDNVFALEAYAMKLKKPFIHGGTAHVERMRILQNFQHNPIVNTIFLSKVGDTSIDLPE 732
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 733 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTAEMFYSTKRQQF 791
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD 501
LI+QGY+++VIT L GME+ + Y + +Q +LLQ VL A+E DAD
Sbjct: 792 LIDQGYAFRVITHLVGMEDMPELVYKKQSDQIELLQSVLIANEADAD 838
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+TA CT++K LVLC S VSV QW+ QF WS D+ I FT++ K+K G
Sbjct: 456 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGA 515
Query: 98 -GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+++T KRS + + M +L+++EWG +LLD+
Sbjct: 516 SGIVVSTYSMVANTGKRSHTSQKMMNFLESREWGFILLDE 555
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
E F +D+ +M LK DH SRPLW++P+ GHI LE FSP+ A DFLIAIAEPV RP
Sbjct: 134 ELRFHTRDF-TKMPLKLDHASRPLWISPDDGHIILEGFSPLAEQAQDFLIAIAEPVSRPA 192
Query: 214 HIHEVHTIPAKMFRRVLTIVQSH 236
+IHE P ++ V +Q +
Sbjct: 193 YIHEYKLTPYSLYAAVSVGLQPN 215
>gi|50546603|ref|XP_500771.1| YALI0B11726p [Yarrowia lipolytica]
gi|49646637|emb|CAG83021.1| YALI0B11726p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/330 (60%), Positives = 249/330 (75%), Gaps = 8/330 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 473 LDEVHVVPAAMFRKVVTNIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 532
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP+K++A Q+LI YHE+RGDK I
Sbjct: 533 GHIANVQCAEVWCPMTSEFYQEYLKENARKRMLLYIMNPSKFQAAQFLINYHEKRGDKII 592
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV ALK YA+K+ K +I+G T Q ER++IL+NF+ N +VNTIF+SKV DTS DLPE
Sbjct: 593 VFSDNVHALKAYALKLGKFFIFGGTPQQERMKILKNFQYNDQVNTIFLSKVGDTSIDLPE 652
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 653 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 711
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEER-------VAG 507
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E V
Sbjct: 712 LVDQGYAFKVITHLHGMENLPDLAYASARERRELLQEVLLQNEDAATLEEGDNADSFVGR 771
Query: 508 EVGGVSGGFKRSGGTMASLSGADDAVYHES 537
G KR+ G++ASL+G +D Y E+
Sbjct: 772 GSSNKRGSAKRTTGSLASLAGGEDMAYIET 801
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE+K+K G
Sbjct: 376 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSESKEKFSGD 435
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +LQ++EWG ++LD+ VP A + V + AA
Sbjct: 436 AGLVVSTYSMVANTRNRSHDSQKMMDFLQSREWGFIILDEVHVVPAAMFRKVVTNIAA 493
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 147 EKDDAAVPE---DEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFL 202
E D VP+ + FG D+ + + LKPDH +RPLW+ P +G I LESFSP+ A DFL
Sbjct: 70 EIPDDYVPDSVSNIFGKHDF-SYLKLKPDHAARPLWINPEDGRIILESFSPLAEQAQDFL 128
Query: 203 IAIAEPVCRPEHIHEVHTIPAKMFRRV 229
+ IAEP+ RP HIHE ++ V
Sbjct: 129 VTIAEPISRPSHIHEYRITTYSLYAAV 155
>gi|168044023|ref|XP_001774482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674194|gb|EDQ60706.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 734
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/331 (60%), Positives = 254/331 (76%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I+DLNFLIGPKLYEANWL+L K
Sbjct: 374 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERISDLNFLIGPKLYEANWLDLVKG 433
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
G+IA VQCAEVWCPM+ EFYREYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 434 GYIANVQCAEVWCPMTKEFYREYLKKENSRKKQGLYVMNPNKFRACEFLIRFHEEQRGDK 493
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSDN+FAL+ YA K+ KP+IYGPTS ER +IL FK +P+VNT+F+SKV D S D+
Sbjct: 494 IIVFSDNLFALREYATKLRKPFIYGPTSHHERTRILYAFKHSPQVNTVFLSKVGDNSIDI 553
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK---KGAIA---EEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK K +A EE+NAFFY+LVS DT EM
Sbjct: 554 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHKDRMAGGTEEFNAFFYSLVSTDTQEMY 613
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y + D+Q LL +VL A E E++
Sbjct: 614 YSTKRQQFLIDQGYSFKVITSLPPADSGPELSYHSLDDQMNLLTKVLHAGEDSIGIEQLD 673
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+V ++ F R G M+++SGA+ +Y+E
Sbjct: 674 EDVDDITRNRFTRRYGNMSNISGAEGRLYYE 704
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C + K L L + VSV+QW QFKLWST D I RFTS++K++ G
Sbjct: 277 AGKSLVGVSAACRISKSVLCLATNAVSVDQWAFQFKLWSTVGDHQISRFTSDSKERFRGS 336
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+ + ++ +QN+EWG++L+D+
Sbjct: 337 VGVVVTTYNMVAFGGKRSEESQKIIEEIQNREWGLLLMDE 376
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAK 224
++ LKPDH +RPLWV +G IFLE+FS +Y+ A+DFLIAIAEPVCRPE +HE + P
Sbjct: 18 TKLELKPDHSNRPLWVCADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYNLTPHS 77
Query: 225 MFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGP-KLYEANWLELQKRGFIARVQCA 283
++ V +++ + + L + L+F+ G + Y L LQK +
Sbjct: 78 LYAAVSVGLETETIITVLDRLSKTKLPKEILDFIRGSTQNYGKVKLVLQKNRYFVESPFP 137
Query: 284 EV 285
EV
Sbjct: 138 EV 139
>gi|393241520|gb|EJD49042.1| DNA repair helicase rad25 [Auricularia delicata TFB-10046 SS5]
Length = 873
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/362 (56%), Positives = 257/362 (70%), Gaps = 28/362 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKI+DLN++IGPKLYEANW++L +
Sbjct: 494 LDEVHVVPAAMFRRVVTTIKAHAKLGLTATLVREDDKISDLNYMIGPKLYEANWMDLAAK 553
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + ++ LLY NP K++A Q+L+ YHE RGDK I
Sbjct: 554 GHIANVQCAEVWCPMTPEFYREYLRAEARRKTLLYCTNPGKFQACQFLVKYHEDRGDKII 613
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVF L+ YA K+ K YI+G T ER++ILQ+F+ +P VNTIF+SKV DTS DLPE
Sbjct: 614 VFSDNVFTLEQYARKLGKLYIHGGTPHVERMRILQHFQHHPNVNTIFLSKVGDTSIDLPE 673
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ+F
Sbjct: 674 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYFSTKRQQF 732
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGYS+KVIT+L G+E + Y TRDEQ +LLQ VL A+E D E +A
Sbjct: 733 LIDQGYSFKVITQLDGLESMPDLVYRTRDEQIELLQAVLQANENAGDLGTDLKASEGDLA 792
Query: 507 GEVG-------GVSG--GFKRSGGTMASLSGADDAVYHESRFS----------NVKHPLF 547
G V G +G KR+ G++ +LSG Y E S + +H LF
Sbjct: 793 GTVTSNHFGRPGKAGYRAPKRTTGSLTALSGGQHMSYVEQNRSANKQLAKDAASSRHKLF 852
Query: 548 KK 549
KK
Sbjct: 853 KK 854
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 74/112 (66%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K LVLC S VS QW+ QF WS D I FTS+ K+K
Sbjct: 397 AGKTLVGITAACTIKKSCLVLCTSAVSGMQWRQQFLQWSNVTDKQIAVFTSDQKEKFATE 456
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M +L ++EWG +LLD+ VP A + V
Sbjct: 457 SGIIVSTYSMVANTHNRSHESQKMMDFLTSREWGFILLDEVHVVPAAMFRRV 508
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 14/93 (15%)
Query: 167 MVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
+ LKPDH +RPLW+ P +GHI LE+FSP+ A DFL+AI+EPV RP +HE
Sbjct: 107 LSLKPDHAARPLWINPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFMHEYK------ 160
Query: 226 FRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
V S+ + L DD I LN L
Sbjct: 161 -------VTSYSLYAAVSVGLETDDIIEVLNRL 186
>gi|340905279|gb|EGS17647.1| DNA repair helicase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 867
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/331 (58%), Positives = 248/331 (74%), Gaps = 10/331 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV++ ++SH KLGLTATLLREDD+I+ LNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAEMFRRVISSIKSHAKLGLTATLLREDDRISHLNFLIGPKLYEANWMELSQQ 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM EFY EYL + LY MNP K++A QYLI YHE RGDK I
Sbjct: 547 GHIAKVQCAEVWCPMPTEFYDEYLRANARMKRTLYAMNPRKFQACQYLINYHEARGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA+K+ K +IYG TSQ+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 607 VFSDELYSLKQYALKLKKVFIYGGTSQAERMQVLENFQHNPEVNTLFLSKIGDTSLDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT LA +E+ + +ST E +LLQ+ L +E A+E+ ++ G +G
Sbjct: 726 LVDQGYAFKVITHLANIEQTPDLAFSTPQEVRELLQRTLVDNEKGAEEDVETDDLFGRTG 785
Query: 515 ---------GFKRSGGTMASLSGADDAVYHE 536
G +R+ G ++ LSG D Y E
Sbjct: 786 RKKKAGALSGVRRTAGMLSELSGGQDMAYIE 816
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + I FT+E+K++ G
Sbjct: 390 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAIFTAESKNRFQGS 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++++++RS ++ + M +L+ +EWG+MLLD+
Sbjct: 450 TGIIVTTYSMVTNSRERSHDSKKMMDFLRGREWGLMLLDE 489
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 150 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGH-IFLESFSPVYRHAHDFLIAIAEP 208
DAA P F KD+ + + LKPDH +RPLW+ PN I LE F+P+ A DFLI IAEP
Sbjct: 94 DAATPY--FKKKDF-SYLPLKPDHYNRPLWIDPNTQTIVLERFNPLSEQATDFLITIAEP 150
Query: 209 VCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLN-FLIGP 261
RP +HE ++ +H + LR D I L+ FL P
Sbjct: 151 RSRPTFLHEY-------------VMTTHSLYAAVSVGLRPKDIINTLDRFLKTP 191
>gi|302765739|ref|XP_002966290.1| hypothetical protein SELMODRAFT_230853 [Selaginella moellendorffii]
gi|300165710|gb|EFJ32317.1| hypothetical protein SELMODRAFT_230853 [Selaginella moellendorffii]
Length = 711
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/349 (57%), Positives = 255/349 (73%), Gaps = 16/349 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 360 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKN 419
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE-RRGDKT 333
G+IA VQCAEVWCPM+ EFY EYL + K+ LYVMNPNK+RA ++L+ +HE +RGDK
Sbjct: 420 GYIANVQCAEVWCPMTKEFYAEYLKKENKKQQALYVMNPNKFRACEFLVRFHEQQRGDKI 479
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDN+FAL+ YA K+ KP+IYGPTS ER +IL FK + VNT+F+SKV D S D+P
Sbjct: 480 IVFSDNLFALREYATKLKKPFIYGPTSHQERTKILYAFKHSLDVNTVFLSKVGDNSIDIP 539
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAK-------KGAIAEEYNAFFYTLVSQDTMEMS 446
EANV+IQISSH GSRRQEAQRLGRILRAK +G +EEYNAFFY+LVS DT EM
Sbjct: 540 EANVIIQISSHAGSRRQEAQRLGRILRAKGKPCDRVRGG-SEEYNAFFYSLVSTDTQEMY 598
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KV+T L + + YS +Q LL +VL A E A E++
Sbjct: 599 YSSKRQQFLIDQGYSFKVLTNLPPSDSGTDLSYSNLQDQMDLLLKVLNAGEDAAGVEKLE 658
Query: 507 GEVGGVSG-GFKRSGGTMASLSGADDAVYHE------SRFSNVKHPLFK 548
+ ++ +R+ G+M+++SGA +Y E R N +H LFK
Sbjct: 659 HDADDIANLKIRRTAGSMSAMSGAKGRLYTEFSGRGKPRDPNKRHNLFK 707
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGV+A C +R+ L L + VSV+QW QFKLWST D ICRFTS++KDK G
Sbjct: 263 AGKSLVGVSAACRIRRSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKDKFKGN 322
Query: 98 G-ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
++VTTY+M++ KRS E+++ ++ ++++EWG++L+D+
Sbjct: 323 ACVIVTTYNMVAFKGKRSEESEKVIELIRSREWGLLLMDE 362
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 15/100 (15%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
D+F A + LK DH RP+ V +G IFLE+FSP+Y+ A+DFLIA+AEPVCRPEH+
Sbjct: 12 DDFSA------LELKSDHDRRPILVGCDGRIFLETFSPLYKQAYDFLIAVAEPVCRPEHM 65
Query: 216 HEVHTIPAKMF---------RRVLTIVQSHCKLGLTATLL 246
HE P ++ V+T+++ K L +T+L
Sbjct: 66 HEYSLTPHSLYAAVSFGLETSAVITVLERLSKAKLPSTVL 105
>gi|396492464|ref|XP_003843805.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Leptosphaeria maculans JN3]
gi|312220385|emb|CBY00326.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Leptosphaeria maculans JN3]
Length = 806
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 246/330 (74%), Gaps = 11/330 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F++V + SH KLGLTATLLREDDKI DLNFLIGPKLYEANW EL ++G
Sbjct: 449 EVHVVPANIFKKVTYEIASHAKLGLTATLLREDDKIDDLNFLIGPKLYEANWQELSEQGH 508
Query: 277 IARVQCAEVWCPMSPEFYREYL-VCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IARVQCAEVWC M+PEFY E+L KR LL +MNP K++A +YLI YHE RGDK IV
Sbjct: 509 IARVQCAEVWCQMTPEFYTEWLKPSSLQKRALLSIMNPKKFQACEYLINYHESRGDKIIV 568
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
FSDNV+AL+ YAVK+NK YI+G T Q+ERIQIL+NF+ N +NTIF+SK+ DTS DLPEA
Sbjct: 569 FSDNVYALQAYAVKLNKAYIFGGTPQAERIQILENFQHNNIINTIFLSKIGDTSLDLPEA 628
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ FL
Sbjct: 629 TCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAFL 687
Query: 456 INQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV--- 512
++QGY++KVIT+L G+E+ +H+ST E+ +LL ++L A + + E +AG+ G
Sbjct: 688 VDQGYAFKVITRLEGLEKYEKLHFSTPQERRELLLEILIARDDAGNTETIAGDAFGTQYA 747
Query: 513 ------SGGFKRSGGTMASLSGADDAVYHE 536
+ G +R+ GT++ LSG Y E
Sbjct: 748 ASRGKKNTGVRRAAGTLSELSGGQTMAYIE 777
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF-- 226
LKPDH+ RPLWV G I LESF P++ A DFLI IAEP R +HE +F
Sbjct: 74 LKPDHQDRPLWVNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAA 133
Query: 227 -------RRVLTIVQSHCKLGLTATLL 246
+ ++ + ++ K L+ T++
Sbjct: 134 VSVGHSSKEIIDRLDTYSKTALSDTIV 160
>gi|315049307|ref|XP_003174028.1| DNA repair helicase RAD25 [Arthroderma gypseum CBS 118893]
gi|311341995|gb|EFR01198.1| DNA repair helicase RAD25 [Arthroderma gypseum CBS 118893]
Length = 803
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/332 (59%), Positives = 250/332 (75%), Gaps = 11/332 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 441 LDEVHVVPAFMFRTVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 501 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKII 560
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 561 VFSDNVFALERYALKLKKAYIYGGTPQNERLRILENFQHNDQVNTIFLSKIGDTSLDLPE 620
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 621 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL------AASETDADE---ERV 505
L++QGY++KVIT L G+E G+ Y+T +E+ LL V AA E +AD+ +R
Sbjct: 680 LVDQGYAFKVITHLQGIENLEGLAYATAEERLALLADVTLQNETSAAVEENADDLFNDRT 739
Query: 506 A-GEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
A G+ G G +R+ T++ L+G +D Y E
Sbjct: 740 AGGKSRGSKKGVRRNAATLSGLAGGEDMAYIE 771
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 344 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRS 403
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+S T+ RS +A++ M+WLQ++EWG+MLLD+
Sbjct: 404 TGVIVSTYSMVSQTRARSHDAEKMMEWLQSREWGLMLLDE 443
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K AA + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 47 QKSQAAKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 105
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 106 AEPLSRPTHLHE 117
>gi|388582732|gb|EIM23036.1| DNA repair helicase rad25 [Wallemia sebi CBS 633.66]
Length = 772
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 255/350 (72%), Gaps = 19/350 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L +
Sbjct: 407 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAAK 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM P FYREYL K+ KR+LLY MNP+K++A Q+LI +HE RGDK I
Sbjct: 467 GHIANVQCAEVWCPMVPCFYREYLREKSRKRMLLYSMNPHKFQACQFLIDFHEDRGDKII 526
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD V++L+ YA K+ KPYI+G TSQ ER+++LQ F+ + VNTIF+SKV DTS DLPE
Sbjct: 527 VFSDCVYSLEQYARKLKKPYIHGGTSQVERMRVLQRFQYDSNVNTIFLSKVGDTSIDLPE 586
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS DT EM YS KRQ F
Sbjct: 587 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSTDTQEMFYSTKRQGF 645
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
L++QGY++KVIT L G+E + Y + EQ +LL+ VL A+E+ AD E+ +A
Sbjct: 646 LVDQGYAFKVITHLFGIERLPDLVYRSEKEQIELLESVLLANESAADIGSDIKASEDDLA 705
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHESRFS-------NVKHPLFKK 549
G + GV+ KR G ++L+G Y E S + +H LFKK
Sbjct: 706 GTIHGVT---KRMTGNTSALAGGQAMSYIEKNKSANKQITNDSRHSLFKK 752
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS +DS I FT++ K+K G
Sbjct: 310 AGKTLVGITAACTIKKSVLVLCTSSVSVMQWKQQFMQWSNVNDSQISVFTADQKEKFGGE 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T+ RS E+ + M +L ++EWG +LLD+ VP A + V
Sbjct: 370 SGIVVSTYSMVANTRNRSHESQKMMDFLTSREWGFILLDEVHVVPAAMFRRV 421
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +Y + LK DH +RPLWV+P +GHI LE FSP+ A DFL+AIAEPV R +
Sbjct: 12 FGNHNY-GDLPLKADHANRPLWVSPEDGHIILEGFSPIAEQAQDFLVAIAEPVSRTSLME 70
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 71 EYKVTPYSLYAAV 83
>gi|326468955|gb|EGD92964.1| hypothetical protein TESG_00524 [Trichophyton tonsurans CBS 112818]
gi|326480066|gb|EGE04076.1| DEAD/DEAH box helicase [Trichophyton equinum CBS 127.97]
Length = 809
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/332 (59%), Positives = 248/332 (74%), Gaps = 11/332 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 447 LDEVHVVPAFMFRTVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 506
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 507 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKII 566
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 567 VFSDNVFALERYALKLKKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 626
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 627 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 685
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ Y+T +E+ LL V +ET A E A ++
Sbjct: 686 LVDQGYAFKVITHLQGIENLEGLAYATAEERLALLADVTLQNETSAAVEENADDLFNDRS 745
Query: 510 -GGVSGGFK----RSGGTMASLSGADDAVYHE 536
GG S G K R+ T++ L+G +D Y E
Sbjct: 746 AGGKSRGNKKAVRRNAATLSGLAGGEDMAYIE 777
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 350 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRS 409
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+S T+ RS +A++ M+WLQ++EWG+MLLD+
Sbjct: 410 TGVIVSTYSMVSQTRARSHDAEKMMEWLQSREWGLMLLDE 449
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K A + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 53 QKSQAIKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 111
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 112 AEPLSRPTHLHE 123
>gi|302506306|ref|XP_003015110.1| hypothetical protein ARB_06870 [Arthroderma benhamiae CBS 112371]
gi|291178681|gb|EFE34470.1| hypothetical protein ARB_06870 [Arthroderma benhamiae CBS 112371]
Length = 830
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/332 (59%), Positives = 248/332 (74%), Gaps = 11/332 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 468 LDEVHVVPAFMFRTVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 527
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 528 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKII 587
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 588 VFSDNVFALERYALKLKKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 647
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 648 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 706
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ Y+T +E+ LL V +ET A E A ++
Sbjct: 707 LVDQGYAFKVITHLQGIENLEGLAYATAEERLALLADVTLQNETSAAVEENADDLFNDRS 766
Query: 510 -GGVSGGFK----RSGGTMASLSGADDAVYHE 536
GG S G K R+ T++ L+G +D Y E
Sbjct: 767 AGGKSRGNKKAVRRNAATLSGLAGGEDMAYIE 798
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 371 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRS 430
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+S T+ RS +A++ M+WLQ++EWG+MLLD+
Sbjct: 431 TGVIVSTYSMVSQTRARSHDAEKMMEWLQSREWGLMLLDE 470
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Query: 130 GIMLLDDGVPVAAKKNVEK--------DDAAVPED-EFGAKDYRAQMVLKPDHKSRPLWV 180
G++ LD + K VEK AV +D FG KD+ + + LKPDH +RPLW+
Sbjct: 48 GMLRLDTTLHFTGKNVVEKFTLQSYSQKSQAVKQDPHFGYKDF-SSLALKPDHANRPLWI 106
Query: 181 AP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
P G I LESFSP+ A DFL IAEP+ RP H+HE
Sbjct: 107 EPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLHE 144
>gi|302656492|ref|XP_003019999.1| hypothetical protein TRV_05968 [Trichophyton verrucosum HKI 0517]
gi|291183777|gb|EFE39375.1| hypothetical protein TRV_05968 [Trichophyton verrucosum HKI 0517]
Length = 819
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/332 (59%), Positives = 248/332 (74%), Gaps = 11/332 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 457 LDEVHVVPAFMFRTVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 516
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 517 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKII 576
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 577 VFSDNVFALERYALKLKKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 636
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 637 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ Y+T +E+ LL V +ET A E A ++
Sbjct: 696 LVDQGYAFKVITHLQGIENLEGLAYATAEERLALLADVTLQNETSAAVEENADDLFNDRS 755
Query: 510 -GGVSGGFK----RSGGTMASLSGADDAVYHE 536
GG S G K R+ T++ L+G +D Y E
Sbjct: 756 AGGKSRGNKKSVRRNAATLSGLAGGEDMAYIE 787
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 360 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRS 419
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+S T+ RS +A++ M+WLQ++EWG+MLLD+
Sbjct: 420 TGVIVSTYSMVSQTRARSHDAEKMMEWLQSREWGLMLLDE 459
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K A + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 63 QKSQAVKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 121
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 122 AEPLSRPTHLHE 133
>gi|327301565|ref|XP_003235475.1| TFIIH complex helicase Ssl2 [Trichophyton rubrum CBS 118892]
gi|326462827|gb|EGD88280.1| TFIIH complex helicase Ssl2 [Trichophyton rubrum CBS 118892]
Length = 819
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/332 (59%), Positives = 248/332 (74%), Gaps = 11/332 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 457 LDEVHVVPAFMFRTVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 516
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 517 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKII 576
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 577 VFSDNVFALERYALKLKKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 636
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 637 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT L G+E G+ Y+T +E+ LL V +ET A E A ++
Sbjct: 696 LVDQGYAFKVITHLQGIENLEGLAYATAEERLALLADVTLQNETSAAVEENADDLFNDRS 755
Query: 510 -GGVSGGFK----RSGGTMASLSGADDAVYHE 536
GG S G K R+ T++ L+G +D Y E
Sbjct: 756 AGGKSRGNKKAVRRNAATLSGLAGGEDMAYIE 787
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 360 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRS 419
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+S T+ RS +A++ M+WLQ++EWG+MLLD+
Sbjct: 420 TGVIVSTYSMVSQTRARSHDAEKMMEWLQSREWGLMLLDE 459
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K A + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 63 QKSQAVKQDPHFGYKDF-SSLALKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTI 121
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 122 AEPLSRPTHLHE 133
>gi|296817193|ref|XP_002848933.1| DNA repair helicase RAD25 [Arthroderma otae CBS 113480]
gi|238839386|gb|EEQ29048.1| DNA repair helicase RAD25 [Arthroderma otae CBS 113480]
Length = 813
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/334 (59%), Positives = 251/334 (75%), Gaps = 15/334 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 451 LDEVHVVPASMFRTVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 510
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 511 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKII 570
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 571 VFSDNVFALERYALKLKKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 630
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 631 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 689
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL------AASETDADE---ERV 505
L++QGY++KVIT L G+E G+ Y+T +E+ LL V AA E +AD+ +R+
Sbjct: 690 LVDQGYAFKVITHLQGIENLEGLAYATAEERLALLADVTLQNETSAAVEENADDLFNDRM 749
Query: 506 AGEVGGVSGG---FKRSGGTMASLSGADDAVYHE 536
AG G GG +R+ T++ L+G +D Y E
Sbjct: 750 AG--GKPRGGKKPVRRNAATLSGLAGGEDMAYIE 781
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 354 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRN 413
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+S T+ RS +A++ M+WLQ++EWG+MLLD+
Sbjct: 414 TGVIVSTYSMVSQTRARSHDAEKMMEWLQSREWGLMLLDE 453
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG KD+ A + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP H+H
Sbjct: 67 FGYKDFSA-LSLKPDHANRPLWIEPLKGTITLESFSPLASQAQDFLTTIAEPLSRPTHLH 125
Query: 217 E 217
E
Sbjct: 126 E 126
>gi|406861685|gb|EKD14738.1| DNA repair helicase rad25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 839
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/333 (58%), Positives = 249/333 (74%), Gaps = 12/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA MFRRV +I+++H KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 472 LDEVHVAPAHMFRRVTSIIKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELAEQ 531
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM+ EFY EYL + + L+++MNP K++A QYLI YHE+RGDK I
Sbjct: 532 GHIARVQCAEVWCPMTTEFYTEYLNQSSRNKSLIWIMNPRKFQACQYLINYHEKRGDKII 591
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA K+NK +IYG T +ER++IL+NF+ N +NT+F+SK+ DTS DLPE
Sbjct: 592 VFSDNVYALKMYAQKLNKVFIYGETGNTERLRILENFQHNSNINTLFLSKIGDTSLDLPE 651
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT+EM YS KRQ F
Sbjct: 652 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTLEMVYSSKRQAF 710
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADE--------ERVA 506
L++QGY++KVIT L G+E + ++T E+ +LLQ V+ +E D+ RV
Sbjct: 711 LVDQGYAFKVITHLQGIENLPDLAFTTPAERRELLQNVMIHNEAGGDDYEDGDDLFHRVD 770
Query: 507 GEVG---GVSGGFKRSGGTMASLSGADDAVYHE 536
GE+G G +R+ G ++ L+G D Y E
Sbjct: 771 GEMGRKKKKKKGARRTAGNLSELAGGSDMAYVE 803
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K ++LC S +SV QW+ +F W + + I FTS+ KD+ G
Sbjct: 375 AGKTLVGITAACTIKKGVIILCTSSMSVVQWRQEFLKWCNINPNDIAVFTSDNKDRFTGN 434
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTY+M++ KRS+++ + M +L ++EWG+M+LD+
Sbjct: 435 TGIIVTTYNMVAQQGKRSYDSQKMMDFLTSREWGLMILDE 474
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 150 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEP 208
D+A E G D+ + + LKPDH +RPLW+ P G I +ESFSP+ A DFL +AEP
Sbjct: 78 DSASHHFEGGNHDF-SYLSLKPDHHNRPLWIDPLKGKIIMESFSPLATEAQDFLTTVAEP 136
Query: 209 VCRPEHIHEVHTIPAKMFRRV 229
RP+ +HE P ++ V
Sbjct: 137 QSRPQFLHEYSLTPHSLYAAV 157
>gi|452823742|gb|EME30750.1| DNA excision repair protein ERCC-3 [Galdieria sulphuraria]
Length = 807
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/360 (56%), Positives = 259/360 (71%), Gaps = 28/360 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VL ++++HCKLGLTATL+RED+KI D+NFLIGPKLYEANWL+LQ+
Sbjct: 446 LDEVHVVPANMFRKVLGVIKAHCKLGLTATLVREDEKIEDVNFLIGPKLYEANWLDLQQN 505
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G++A VQCAEVWCPM+ EFYREYL+ ++KR LLY MNPNK++ T +LI +HE RGDK I
Sbjct: 506 GYLATVQCAEVWCPMTAEFYREYLIQNSAKRKLLYTMNPNKFQTTDFLIRFHENRGDKII 565
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDN+FAL+ YA ++ +P+IYGPTSQ+ER++I F+ NP + TIF+SKV DTS DLPE
Sbjct: 566 VFSDNIFALRTYARRLARPFIYGPTSQAERMRIFYQFQNNPALGTIFISKVGDTSIDLPE 625
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANV+IQISSH GSRRQEAQRLGRILR K + + +NA+FY+LVS DT EM YS KRQ+F
Sbjct: 626 ANVIIQISSHYGSRRQEAQRLGRILRPKPRS-GQHFNAYFYSLVSTDTQEMYYSSKRQQF 684
Query: 455 LINQGYSYKVITKLAGMEEER-GMHYSTRDEQGQLLQQVLAA------------SETDAD 501
LI QGYS++VIT L GM+EER + Y ++EQ LL VLAA S+ D
Sbjct: 685 LIEQGYSFQVITHLEGMQEERHHLAYYRKEEQLSLLAAVLAADEKETEEEFVEDSDPSGD 744
Query: 502 EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK------------HPLFKK 549
R+ + G KR+ ++ LSGAD VY E + K HPLF+K
Sbjct: 745 VARILSKDG--RQLTKRTNRSLRKLSGADGLVYREYDTAQTKNVSSIFERKVIHHPLFRK 802
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 73/102 (71%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA---KDKP 94
AGK+LVGV A CT++K LVLC S VSVEQW+HQF LWST DD I RFT++ KD
Sbjct: 347 AGKTLVGVVAACTIKKPTLVLCTSAVSVEQWRHQFLLWSTIDDKNISRFTADIKVKKDSG 406
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTY+M++ KRS E+ + ++ ++++EWG++LLD+
Sbjct: 407 WLGSVTITTYTMVAFGGKRSRESQEILEEMRSREWGLILLDE 448
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAK 224
+Q+ LK DH+ RPLWV P+G IFLE+FSP+Y+ A+DFL+A++EP RPE IHE P
Sbjct: 77 SQLKLKVDHERRPLWVCPSGKIFLETFSPLYKQAYDFLVAVSEPASRPEFIHEYMITPYS 136
Query: 225 MFRRV 229
++ V
Sbjct: 137 LYAAV 141
>gi|242054073|ref|XP_002456182.1| hypothetical protein SORBIDRAFT_03g031750 [Sorghum bicolor]
gi|241928157|gb|EES01302.1| hypothetical protein SORBIDRAFT_03g031750 [Sorghum bicolor]
Length = 767
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/331 (60%), Positives = 249/331 (75%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 409 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 468
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 469 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDK 528
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP I+G TS +ER +IL FK +P+VNTIF+SKV D S D+
Sbjct: 529 IIVFADNLFALTAYAMKLRKPMIFGATSHAERTRILYQFKNSPEVNTIFLSKVGDNSIDI 588
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 589 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 648
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L EE + + T DEQ +LL +VL A + ER+
Sbjct: 649 YSTKRQQFLIDQGYSFKVITSLPPPEEGPNLSFYTLDEQLELLSKVLNAGDDMIGVERLE 708
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G+M++ SGA VY E
Sbjct: 709 EDSDGKALLRARRSAGSMSAFSGAGGMVYME 739
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 312 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFTGM 371
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 372 ASVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 411
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
E +D+ ++ LK DH SRPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 48 EVKKRDF-TKLELKVDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 106
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
E + P ++ V +++ + + + L
Sbjct: 107 EYNLTPHSLYAAVSVGLETSTIISVLSKL 135
>gi|414880902|tpg|DAA58033.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
Length = 767
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/331 (60%), Positives = 247/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 409 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 468
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 469 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDK 528
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP I+G TS +ER +IL FK +P+VNTIF+SKV D S D+
Sbjct: 529 IIVFADNLFALTTYAMKLRKPMIFGATSHAERTRILYQFKNSPEVNTIFLSKVGDNSIDI 588
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 589 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 648
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L EE + Y T DEQ +LL L A + ER+
Sbjct: 649 YSTKRQQFLIDQGYSFKVITSLPPAEEGPNLSYYTLDEQLELLSMALNAGDDMIGVERLE 708
Query: 507 GEVGGVSG-GFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G+M++ SGA VY E
Sbjct: 709 EDSDGKALIRARRSAGSMSAFSGAGGMVYME 739
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 312 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDENISRFTSDNKEKFTGM 371
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 372 AGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 411
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++ LK DH SRPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HE + P +
Sbjct: 56 KLELKVDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSL 115
Query: 226 FRRVLTIVQSHCKLGLTATL 245
+ V +++ + + + L
Sbjct: 116 YAAVSVGLETSTIISVLSKL 135
>gi|452981911|gb|EME81670.1| hypothetical protein MYCFIDRAFT_154357 [Pseudocercospora fijiensis
CIRAD86]
Length = 807
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/348 (57%), Positives = 252/348 (72%), Gaps = 11/348 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV +++H KLGLTATLLREDDKI DLNFLIGPKLYEANWL+L +
Sbjct: 439 LDEVHVVPAEMFRRVTERIKTHSKLGLTATLLREDDKIKDLNFLIGPKLYEANWLQLSEE 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G IARVQCAEVWCPM+ EFY EYL +T+ KR LL MNP K++A Q+LI +HE RGDK
Sbjct: 499 GHIARVQCAEVWCPMTTEFYSEYLSAQTTNKRGLLSTMNPRKFQACQFLINFHESRGDKI 558
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA + KP+I+G TSQ ER +L NF++N V+TIF+SK+ DTS DLP
Sbjct: 559 IVFSDNVYALRKYAEALQKPFIFGDTSQKEREMVLANFQMNDAVSTIFLSKIGDTSLDLP 618
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA LIQ+SSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ
Sbjct: 619 EATCLIQVSSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTNEMFYSSKRQA 677
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV---- 509
FL++QGY++KVIT L G+E+ + ++T+ E+ LQ VL SET D E + ++
Sbjct: 678 FLVDQGYAFKVITHLNGIEKMPNLKFTTQQERMTALQDVLLQSETAGDVEDIKDDLFSDR 737
Query: 510 ----GGVSG-GFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFRG 552
G G G +R GT++SL+G ++ Y+E +N L K R
Sbjct: 738 NVSRGKAKGKGVRRQAGTLSSLAGGENMAYYEYSKNNPNKALAAKPRN 785
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CTV+K A+VLC S +S QWK +FK WS + I FTS K K
Sbjct: 342 AGKTLVGITAACTVKKSAIVLCTSAMSAVQWKDEFKKWSNINPDDIVIFTSGEKQKLRDK 401
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+++ TYSM++ +R+ ++ M ++ ++EWG+M+LD+
Sbjct: 402 AGVIICTYSMVTQNTRRAHDSKVVMDFIMSREWGLMVLDE 441
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH RPLW+ P NG + LE+F+P ++ A +FLI IAEP R ++HE P +F
Sbjct: 53 LKPDHHLRPLWIDPQNGKVVLETFAPSFKQAQNFLINIAEPQSRTTNMHEYTISPHSLFA 112
Query: 228 RVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYE 265
V +GLT E D + DL K+ E
Sbjct: 113 AV--------SVGLT-----EQDIVRDLELFSKTKVPE 137
>gi|367050828|ref|XP_003655793.1| hypothetical protein THITE_2119890 [Thielavia terrestris NRRL 8126]
gi|347003057|gb|AEO69457.1| hypothetical protein THITE_2119890 [Thielavia terrestris NRRL 8126]
Length = 861
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/335 (57%), Positives = 248/335 (74%), Gaps = 14/335 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV++ ++SH KLGLTATLLREDD+I+ LNFLIGPKLYEANW+EL ++
Sbjct: 485 LDEVHVVPAEMFRRVISSIKSHSKLGLTATLLREDDRISHLNFLIGPKLYEANWMELSQQ 544
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM EFY EYL + LY MNP K++A QYLI YHE RGDK I
Sbjct: 545 GHIAKVQCAEVWCPMPTEFYDEYLRASARMKRTLYAMNPRKFQACQYLINYHEARGDKII 604
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA+K+ K +IYG TSQ+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 605 VFSDELYSLKQYALKLKKVFIYGGTSQAERMQVLENFQHNPEVNTLFLSKIGDTSLDLPE 664
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 665 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 723
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLA----ASETDADEERVAGEVG 510
L++QGY++KVIT+LA +E+ + ++T E +LLQ+ L E D + + + G+
Sbjct: 724 LVDQGYAFKVITQLANIEQTPDLAFATPQECRELLQRTLVDNEKGGEDDIETDDLFGKSR 783
Query: 511 GVSG---------GFKRSGGTMASLSGADDAVYHE 536
G +G G +R+ G +A LSG D Y E
Sbjct: 784 GGNGRNKKLLPGNGVRRTAGMLAELSGGQDMAYIE 818
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + I FT+E+K+K G
Sbjct: 388 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAIFTAESKNKFSGS 447
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++++++RS ++ + M +L+ +EWG+MLLD+
Sbjct: 448 TGIIVTTYSMVTNSRERSHDSKKMMDFLRGREWGLMLLDE 487
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 150 DAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEP 208
DAA P F +D+ + + LKPDH++RPLW+ P+ I LE F+P+ A DFLI IAEP
Sbjct: 94 DAATPF--FRKRDF-SHLPLKPDHQNRPLWIDPDSCTIVLERFNPLAEQATDFLITIAEP 150
Query: 209 VCRPEHIHEVHTIPAKMF---------RRVLTIVQSHCKLGLTATLLRE 248
RP +HE P ++ R ++ + K L A++ RE
Sbjct: 151 KSRPTFLHEYALTPHSLYAAVSVGLRPRDIINTLDRFLKTALPASVRRE 199
>gi|320040710|gb|EFW22643.1| TFIIH complex helicase Ssl2 [Coccidioides posadasii str. Silveira]
Length = 485
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/307 (62%), Positives = 240/307 (78%), Gaps = 6/307 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 155 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 214
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 215 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRGDKVI 274
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+NK YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 275 VFSDNVYALERYALKLNKAYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 334
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 335 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAF 393
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++
Sbjct: 394 LVDQGYAFKVITHLQGIENLEGLAYATAAERRELLQEVMLQNETSAAVEEVVDDLFS--- 450
Query: 515 GFKRSGG 521
RSGG
Sbjct: 451 --DRSGG 455
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+++F WS D + I FTS+ K++
Sbjct: 58 AGKTLVGITAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRS 117
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPED 156
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+ V A + A +
Sbjct: 118 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQT 177
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVC 210
+ G +L+ D K + L ++ ++ + H + AE C
Sbjct: 178 KLGL----TATLLREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWC 227
>gi|326521180|dbj|BAJ96793.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 762
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/352 (58%), Positives = 254/352 (72%), Gaps = 17/352 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 408 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 467
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 468 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDK 527
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS +ER +IL FK +P+VNT+F+SKV D S D+
Sbjct: 528 IIVFADNLFALTAYAMKLRKPMIYGATSHAERTRILYQFKNSPEVNTVFLSKVGDNSIDI 587
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 588 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 647
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L EE + + T DEQ LL +VL+A + E +
Sbjct: 648 YSTKRQQFLIDQGYSFKVITSLPPPEEGPNLSFHTLDEQLDLLGKVLSAGDDMIGVEHLE 707
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE--------SRFSNVKHPLFKK 549
+ G + +RS G M++ SGA VY E + +H LFKK
Sbjct: 708 EDSDGKALLKARRSAGLMSAFSGAGGMVYMEYNKGKGAKKKDPAKRHTLFKK 759
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 311 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHISRFTSDNKEKFRGM 370
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 371 AGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 410
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
+E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +
Sbjct: 47 NEVKKRDF-TKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESM 105
Query: 216 HEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
HE + P ++ V ++++ + + + L
Sbjct: 106 HEYNLTPHSLYAAVSVGLETNTIISVLSKL 135
>gi|367027018|ref|XP_003662793.1| hypothetical protein MYCTH_2303821 [Myceliophthora thermophila ATCC
42464]
gi|347010062|gb|AEO57548.1| hypothetical protein MYCTH_2303821 [Myceliophthora thermophila ATCC
42464]
Length = 863
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/338 (57%), Positives = 248/338 (73%), Gaps = 17/338 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV++ ++SH KLGLTATLLREDDKI+ LNFLIGPKLYEANW+EL ++
Sbjct: 485 LDEVHVVPAEMFRRVISSIKSHSKLGLTATLLREDDKISHLNFLIGPKLYEANWMELSQQ 544
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM EFY EYL + LY MNP K++A QYLI YHE RGDK I
Sbjct: 545 GHIAKVQCAEVWCPMPTEFYDEYLRANARMKRTLYAMNPRKFQACQYLINYHEARGDKII 604
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA+K+ K +IYG TSQ+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 605 VFSDELYSLKQYALKLKKVFIYGGTSQAERMQVLENFQHNPEVNTLFLSKIGDTSLDLPE 664
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 665 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 723
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE----------- 503
L++QGY++KVIT+LA +E+ + ++T E +LLQ+ L +E +++
Sbjct: 724 LVDQGYAFKVITQLANIEKTPDLAFATPQECRELLQRTLVDNERGVEDDVETDDLFGKTG 783
Query: 504 --RVAGEVGGV---SGGFKRSGGTMASLSGADDAVYHE 536
R AG GV G +R+ G ++ L+G D Y E
Sbjct: 784 RSRGAGSGNGVKKPGNGVRRTAGMLSELAGGQDMAYIE 821
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + I FT+E+K K G
Sbjct: 388 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAIFTAESKQKFSGS 447
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++++++RS ++ + M +L+ +EWG+MLLD+
Sbjct: 448 TGIIVTTYSMVTNSRERSHDSKKMMDFLRGREWGLMLLDE 487
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 144 KNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFL 202
+ V + DAA P F +D+ + + LKPDH++RPLW+ P+ I LE F+P+ A DFL
Sbjct: 88 REVRRYDAASPF--FRKRDF-SHLPLKPDHQNRPLWIDPDSCTIVLERFNPLAEQATDFL 144
Query: 203 IAIAEPVCRPEHIHEVHTIPAKMFRRV 229
I IAEP RP +HE P ++ V
Sbjct: 145 ITIAEPKSRPTFLHEYALTPHSLYAAV 171
>gi|19114386|ref|NP_593474.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces pombe 972h-]
gi|46395601|sp|O13768.1|ERCC3_SCHPO RecName: Full=Probable DNA repair helicase ercc3
gi|2370478|emb|CAB11506.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces pombe]
Length = 804
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 258/350 (73%), Gaps = 16/350 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPK+YEANW++L ++
Sbjct: 449 LDEVHVVPAAMFRRVVTTIAAHTKLGLTATLVREDDKIDDLNFLIGPKMYEANWMDLAQK 508
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWC M+ EFY EYL + KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 509 GHIAKVQCAEVWCAMTTEFYNEYLRENSRKRMLLYIMNPKKFQACQFLIDYHEKRGDKII 568
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K +IYG T Q ER++IL+NF+ N VNTIF+SKV DTS DLPE
Sbjct: 569 VFSDNVYALRAYAIKLGKYFIYGGTPQQERMRILENFQYNELVNTIFLSKVGDTSIDLPE 628
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 629 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 687
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD----EERVAG--E 508
LI+QGY++KVIT L GME + Y+++ E+ +LLQ+VL +E AD E+ G
Sbjct: 688 LIDQGYAFKVITNLKGMENLPNLAYASKAERLELLQEVLLQNEEAADLDDGEDTSFGSRS 747
Query: 509 VGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK---------HPLFKK 549
+ KRS G++++L+GAD+ Y E S K H LF+K
Sbjct: 748 LSRAPAKAKRSSGSLSTLAGADNMAYVEYNKSANKQLKKDSKEHHALFRK 797
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF WS I FT++ K++
Sbjct: 352 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKPDHIAVFTADHKERFHSE 411
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS+++ + M +L +EWG +LLD+ VP A + V
Sbjct: 412 AGVVVSTYSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRV 463
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + LK DH +RPLW+ P +G I LE+FSP+ A DFL+ I+EPV RP IH
Sbjct: 71 FGQNDFSNLLGLKLDHTARPLWINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIH 130
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 131 EYRITAYSLYAAV 143
>gi|320586174|gb|EFW98853.1| tfiih complex helicase [Grosmannia clavigera kw1407]
Length = 850
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/330 (59%), Positives = 244/330 (73%), Gaps = 9/330 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 482 LDEVHVVPANIFRKVTSNLKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSQQ 541
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM+ EFY EYL + + LYVMNP K++A QYLI YHE RGDK I
Sbjct: 542 GHIARVQCAEVWCPMTTEFYEEYLKSSSRTKQALYVMNPRKFQACQYLINYHESRGDKII 601
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+VFAL YA K+ K IYG TSQSER++IL+NF+ N +NT+F+SK+ DTS DLPE
Sbjct: 602 VFSDDVFALTKYATKLGKACIYGATSQSERLRILENFQHNASINTLFLSKIGDTSLDLPE 661
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 662 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSSKRQAF 720
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE------TDADE--ERVA 506
L++QGY++KVIT+L +E+ G+ ++T E+ +LLQ+VL E D D+ E+
Sbjct: 721 LVDQGYAFKVITQLQDIEKTPGLAFATARERRELLQEVLVEREKLMEDKVDDDDLWEKTK 780
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
G +R+ GT+ LSG D Y E
Sbjct: 781 GRSMKRMPVARRTAGTLGELSGGQDMAYIE 810
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + I FTS+ K G
Sbjct: 385 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTSDNKSMFTGN 444
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ T++RS +A + M +L+ +EWG+MLLD+
Sbjct: 445 TGIIVTTYSMVTQTRERSHDAKKMMDFLEGREWGMMLLDE 484
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + + LKPDH +RPLW+ P G I LESF P+ A DFLI IAEP+ RP +H
Sbjct: 83 FGNRDF-SFLQLKPDHHNRPLWMDPELGFIILESFHPLAPPAQDFLITIAEPISRPTFLH 141
Query: 217 E 217
E
Sbjct: 142 E 142
>gi|9758045|dbj|BAB08508.1| DNA excision repair cross-complementing protein [Arabidopsis
thaliana]
Length = 754
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 247/330 (74%), Gaps = 8/330 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED+KI DLNFLIGPKLYEANWL+L K
Sbjct: 395 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKG 454
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 455 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 514
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 515 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDI 574
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 575 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 634
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +VL A + E++
Sbjct: 635 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVGLEQLE 694
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G+M+++SGA+ VY E
Sbjct: 695 EDTDGKALKTRRSMGSMSAMSGANGRVYME 724
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW +QFKLWST D ICRFTS++K++ G
Sbjct: 298 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGN 357
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+MI+ KRS EA++ ++ ++N+EWG++L+D+
Sbjct: 358 AGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDE 397
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HE + P ++
Sbjct: 45 LKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 104
Query: 229 V 229
V
Sbjct: 105 V 105
>gi|18422089|ref|NP_568591.1| DNA repair helicase XPB2 [Arabidopsis thaliana]
gi|57013267|sp|Q9FUG4.1|XPB2_ARATH RecName: Full=DNA repair helicase XPB2; AltName: Full=ERCC3 homolog
2; AltName: Full=RAD25 homolog 2; Short=AtXPB2; AltName:
Full=XPB homolog 2
gi|11037022|gb|AAG27465.1|AF308595_1 putative DNA repair protein and transcription factor [Arabidopsis
thaliana]
gi|47606402|gb|AAT36214.1| putative DNA repair and transcription factor XBP2 [Arabidopsis
thaliana]
gi|332007286|gb|AED94669.1| DNA repair helicase XPB2 [Arabidopsis thaliana]
Length = 766
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 247/330 (74%), Gaps = 8/330 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED+KI DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 527 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +VL A + E++
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVGLEQLE 706
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G+M+++SGA+ VY E
Sbjct: 707 EDTDGKALKTRRSMGSMSAMSGANGRVYME 736
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW +QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+MI+ KRS EA++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDE 409
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HE + P ++
Sbjct: 57 LKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 116
Query: 229 V 229
V
Sbjct: 117 V 117
>gi|451853872|gb|EMD67165.1| hypothetical protein COCSADRAFT_285430 [Cochliobolus sativus
ND90Pr]
gi|451999787|gb|EMD92249.1| hypothetical protein COCHEDRAFT_1224108 [Cochliobolus
heterostrophus C5]
Length = 804
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/331 (59%), Positives = 242/331 (73%), Gaps = 12/331 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F++V + SH KLGLTATLLREDDKI DLNFLIGPKLYEANW EL ++G
Sbjct: 445 EVHVVPANIFKKVTYEIASHAKLGLTATLLREDDKIDDLNFLIGPKLYEANWQELSEQGH 504
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA+VQCAEVWC M+PEFY E+L + KR LL +MNP K++A Q+LI YHE RGDK IV
Sbjct: 505 IAKVQCAEVWCQMTPEFYTEWLKPSSLQKRALLSIMNPKKFQACQFLINYHESRGDKIIV 564
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
FSDNV+AL+ Y+ K+ K YIYG T Q ER++IL+NF+ N VNTIF+SK+ DTS DLPEA
Sbjct: 565 FSDNVYALEKYSRKLGKAYIYGATPQQERLRILENFQHNELVNTIFLSKIGDTSLDLPEA 624
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ FL
Sbjct: 625 TCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAFL 683
Query: 456 INQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV--- 512
++QGY++KVIT+L G+E + ++T E+ +LL VL A E DA EER+ G+ G
Sbjct: 684 VDQGYAFKVITRLEGLENFSQLAFATPQERRELLMDVLLAREEDAKEERIEGDAFGTKYA 743
Query: 513 -------SGGFKRSGGTMASLSGADDAVYHE 536
G +R+ GT++ LSG Y E
Sbjct: 744 SNKGNKKKFGVRRAAGTLSELSGGQTMAYME 774
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA C V+K +VLC S +SV QW+ +F WS + + FT++ K + P
Sbjct: 346 AGKTLVGITAACGVKKSVIVLCTSAMSVVQWRAEFIKWSNINPEDVAVFTADNKTRFPRQ 405
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMIS+ +KRS +A++ MQ+++ QEWG+++ D+
Sbjct: 406 AGIIISTYSMISNARKRSHDAEKVMQFIRGQEWGLLIADE 445
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LK DH +RPLWV G I LESF P++ A DFLI IAEP R +HE +F
Sbjct: 73 LKSDHYNRPLWVNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAA 132
Query: 229 V 229
V
Sbjct: 133 V 133
>gi|302793364|ref|XP_002978447.1| hypothetical protein SELMODRAFT_109026 [Selaginella moellendorffii]
gi|300153796|gb|EFJ20433.1| hypothetical protein SELMODRAFT_109026 [Selaginella moellendorffii]
Length = 733
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/356 (56%), Positives = 252/356 (70%), Gaps = 23/356 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 375 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 434
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE-RRGDKT 333
G+IA VQCAEVWCPM+ EFY EYL + K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 435 GYIANVQCAEVWCPMTKEFYAEYLKKENRKQQALYVMNPNKFRACEFLIRFHEQQRGDKI 494
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDN+FAL+ YA K+ +P+IYGPTS ER +IL FK +P VNT+F+SKV D S D+P
Sbjct: 495 IVFSDNLFALREYATKLKRPFIYGPTSHHERTKILYAFKHSPDVNTVFLSKVGDNSIDIP 554
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAK-------KGAIAEEYNAFFYTLVSQDTMEMS 446
EANV+IQISSH GSRRQEAQRLGRILRAK KG EE+NAFFY+LVS DT EM
Sbjct: 555 EANVIIQISSHAGSRRQEAQRLGRILRAKGKPKDRVKGG-TEEFNAFFYSLVSTDTQEMY 613
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KV+T L + + + ++Q LL +VL A E A E++
Sbjct: 614 YSSKRQQFLIDQGYSFKVLTSLPPADSGADLSFHRLEDQLDLLSKVLNAGEDAAGVEQLE 673
Query: 507 GEVGGVSG-GFKRSGGTMASLSGADDAVYHE-------------SRFSNVKHPLFK 548
+ ++ +R G+M++LSG Y E R N +H LFK
Sbjct: 674 HDADDITNLRARRIAGSMSALSGGKGRSYMEFSIGGRGRGQQAKPRDPNKRHNLFK 729
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGKSLVGV+A C +RK L L + VSV+QW QFKLWST D I RFTS++KDK
Sbjct: 278 AGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQISRFTSDSKDKFKSN 337
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++++EWG++L+D+
Sbjct: 338 VGVVVTTYNMVAFKGKRSEESEKVIELIKSREWGLLLMDE 377
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 58/78 (74%)
Query: 152 AVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCR 211
V E E K +++ LKPDH+ RPLWV P+GHIFLE+FSP+Y+ A+DFLIAIAEPVCR
Sbjct: 7 VVDEHETAGKMDFSKLELKPDHEKRPLWVGPDGHIFLETFSPLYKQAYDFLIAIAEPVCR 66
Query: 212 PEHIHEVHTIPAKMFRRV 229
PEH+HE + P ++ V
Sbjct: 67 PEHMHEYNLTPHSLYAAV 84
>gi|302773734|ref|XP_002970284.1| hypothetical protein SELMODRAFT_147068 [Selaginella moellendorffii]
gi|300161800|gb|EFJ28414.1| hypothetical protein SELMODRAFT_147068 [Selaginella moellendorffii]
Length = 713
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/356 (56%), Positives = 252/356 (70%), Gaps = 23/356 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 355 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 414
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE-RRGDKT 333
G+IA VQCAEVWCPM+ EFY EYL + K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 415 GYIANVQCAEVWCPMTKEFYAEYLKKENRKQQALYVMNPNKFRACEFLIRFHEQQRGDKI 474
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDN+FAL+ YA K+ +P+IYGPTS ER +IL FK +P VNT+F+SKV D S D+P
Sbjct: 475 IVFSDNLFALREYATKLKRPFIYGPTSHHERTKILYAFKHSPDVNTVFLSKVGDNSIDIP 534
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAK-------KGAIAEEYNAFFYTLVSQDTMEMS 446
EANV+IQISSH GSRRQEAQRLGRILRAK KG EE+NAFFY+LVS DT EM
Sbjct: 535 EANVIIQISSHAGSRRQEAQRLGRILRAKGKPKDRVKGG-TEEFNAFFYSLVSTDTQEMY 593
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KV+T L + + + ++Q LL +VL A E A E++
Sbjct: 594 YSSKRQQFLIDQGYSFKVLTSLPPADSGADLSFHRLEDQLDLLSKVLNAGEDAAGVEQLE 653
Query: 507 GEVGGVSG-GFKRSGGTMASLSGADDAVYHE-------------SRFSNVKHPLFK 548
+ ++ +R G+M++LSG Y E R N +H LFK
Sbjct: 654 HDADDITNLRARRIAGSMSALSGGKGRSYMEFSIGGRGRGQQAKPRDPNKRHNLFK 709
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGKSLVGV+A C +RK L L + VSV+QW QFKLWST D I RFTS++KDK
Sbjct: 258 AGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQISRFTSDSKDKFKSN 317
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++++EWG++L+D+
Sbjct: 318 VGVVVTTYNMVAFKGKRSEESEKVIELIKSREWGLLLMDE 357
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAK 224
+++ LKPDH+ RPLWV P+GHIFLE+FSP+Y+ A+DFLIAIAEPVCRPEH+HE + P
Sbjct: 4 SKLELKPDHEKRPLWVGPDGHIFLETFSPLYKQAYDFLIAIAEPVCRPEHMHEYNLTPHS 63
Query: 225 MFRRV 229
++ V
Sbjct: 64 LYAAV 68
>gi|357136004|ref|XP_003569596.1| PREDICTED: DNA repair helicase XPB2-like [Brachypodium distachyon]
Length = 766
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/331 (60%), Positives = 246/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 409 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 468
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 469 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDK 528
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS +ER +IL FK +P+VNT+F+SKV D S D+
Sbjct: 529 IIVFADNLFALTAYAMKLRKPMIYGATSHAERTRILYQFKNSPEVNTVFLSKVGDNSIDI 588
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 589 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 648
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L +E + + T DEQ LL +VL A + E +
Sbjct: 649 YSTKRQQFLIDQGYSFKVITSLPPPDEGPNLSFHTLDEQLDLLGKVLNAGDDMIGVEHLE 708
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G M++ SGA VY E
Sbjct: 709 EDSDGKALLKARRSAGLMSAFSGAGGMVYME 739
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 312 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHISRFTSDNKEKFRGM 371
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 372 AGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 411
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HE + P +
Sbjct: 56 KLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSL 115
Query: 226 FRRV------LTIVQSHCKLGLT 242
+ V TI+ KL T
Sbjct: 116 YAAVSVGLETTTIISVLSKLSKT 138
>gi|281201244|gb|EFA75456.1| transcription factor IIH subunit [Polysphondylium pallidum PN500]
Length = 690
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/349 (57%), Positives = 252/349 (72%), Gaps = 16/349 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVLT+ ++HCKLGLTATLLRED+KI DLNFLIGPKLYEANWL+LQK
Sbjct: 344 LDEVHVVPAAMFRRVLTVTRAHCKLGLTATLLREDEKIQDLNFLIGPKLYEANWLDLQKS 403
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A V C+EVWCPM+ EFY EYL ++ K+ LLY MNPNK+R +YLI YHE+RGDK
Sbjct: 404 GFLANVSCSEVWCPMTAEFYHEYLTNESQGKKKLLYTMNPNKFRVCEYLINYHEQRGDKI 463
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+ALK YA ++ + YIYG TS ER+ IL F+ +P V TIF+SKV DTS D+P
Sbjct: 464 IVFSDNVYALKMYATQLKRFYIYGATSGQERMSILSKFQHDPSVRTIFISKVGDTSIDIP 523
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V+IQ+SSH GSRRQE QRLGRILR K + YNAFFY+LVS+DT EM YS KRQ+
Sbjct: 524 EATVIIQVSSHYGSRRQETQRLGRILRPKPKSDG-LYNAFFYSLVSKDTQEMYYSTKRQQ 582
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET---------DADEER 504
FLI+QGYS+KVI++ G++EE+ + +ST++ Q +LLQ+VL + D D+
Sbjct: 583 FLIDQGYSFKVISEFPGLDEEQ-LQFSTKESQLKLLQEVLREGDDSGKIEMLDEDFDDIT 641
Query: 505 VAGEVGGVSGGFKRSGGTMASLS-GADDAVYHE---SRFSNVKHPLFKK 549
V+ + + R+ G + +LS GA D Y E + N K P KK
Sbjct: 642 VSKKKQKPNTTITRTTGNIRALSGGAGDTTYMEYKTPKIFNSKRPAGKK 690
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSL G+TA CTV+K LVLC S VSVEQWK+QFKLWS ++ MI +FTS++K+K
Sbjct: 247 AGKSLSGITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEEKMISKFTSDSKEKMYTL 306
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G+ +TTY+MI+ KRS E+ + M L +EWG++LLD+ VP A + V
Sbjct: 307 AGVTITTYTMIAFGGKRSAESLKIMNDLTKREWGLVLLDEVHVVPAAMFRRV 358
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 38/47 (80%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 208
DY LK D+K+RP+WV P+GHIFLE+FSP+Y+ A DFL+AIAEP
Sbjct: 112 DYSKICQLKTDNKTRPIWVCPDGHIFLETFSPIYKQASDFLVAIAEP 158
>gi|213407190|ref|XP_002174366.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces japonicus yFS275]
gi|212002413|gb|EEB08073.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces japonicus yFS275]
Length = 800
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/348 (58%), Positives = 257/348 (73%), Gaps = 14/348 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPK+YEANW++L ++
Sbjct: 447 LDEVHVVPAAMFRRVVTTIAAHTKLGLTATLVREDDKIDDLNFLIGPKMYEANWMDLAQK 506
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY EYL + KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 507 GHIANVQCAEVWCPMTAEFYNEYLREDSRKRMLLYIMNPKKFQACQFLIDYHEKRGDKII 566
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K +IYG T Q ER++IL+NF+ N VNTIF+SKV DTS DLPE
Sbjct: 567 VFSDNVYALRAYALKLGKYFIYGGTPQQERMRILENFQYNELVNTIFLSKVGDTSIDLPE 626
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 627 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 685
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD----EERVAGEVG 510
LI+QGY++KV+T L GME + Y+T+ E+ +LLQ+VL +E AD EE
Sbjct: 686 LIDQGYAFKVVTNLKGMENLPNLAYATKAERLELLQEVLLQNEDAADLDEGEEYSGFGRA 745
Query: 511 GVSGGFKRSGGTMASLSGADDAVYHE---------SRFSNVKHPLFKK 549
+ KR+ G++++L+GAD+ Y E R S H LF+K
Sbjct: 746 RAAARAKRANGSLSTLAGADNMAYVEYNKSANKQLKRESKEHHALFRK 793
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF WS + FT++ K+
Sbjct: 350 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKSDHVAVFTADHKEAFRSE 409
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
GI+V+TYSM+++T+ RS+++ + M +L +EWG +LLD+ VP A + V AA
Sbjct: 410 AGIVVSTYSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAA 467
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + LK DH +RPLW+ P +G + LE+FSP+ A DFL+ IAEP+ RP IH
Sbjct: 74 FGQSDFSGLLGLKADHAARPLWINPVDGRVILEAFSPLAEQAIDFLVTIAEPISRPAFIH 133
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 134 EYRITAYSLYAAV 146
>gi|356513365|ref|XP_003525384.1| PREDICTED: DNA repair helicase XPB1-like [Glycine max]
Length = 768
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/333 (60%), Positives = 247/333 (74%), Gaps = 13/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 405 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 464
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHER-RGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S KR LYVMNPNK+RA ++LI +HER RGDK
Sbjct: 465 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINFHERTRGDK 524
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +ILQ FK + +NTIF+SKV D S D+
Sbjct: 525 IIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDINTIFLSKVGDNSIDI 584
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 585 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSIDTQEMY 644
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV- 505
YS KRQ+FLI+QGYS+KVIT L +E + Y ++Q LL +VL+A + E++
Sbjct: 645 YSTKRQQFLIDQGYSFKVITSLPPPDEGPNLSYHRLEDQLALLGKVLSAGDDQVGLEQLD 704
Query: 506 --AGEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
A E+ S +RS G+M+++SGA VY E
Sbjct: 705 EDADEIALQSA--RRSQGSMSAMSGAKGMVYME 735
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST + ICRFTS++K++ G
Sbjct: 308 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGN 367
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 368 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 407
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 10/106 (9%)
Query: 124 LQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN 183
++ + GI DDG + A +D+ KD+ +++ LKPDH +RPLW N
Sbjct: 21 FEDPQKGIAYDDDGY---------GGEDAYDDDDGKTKDF-SKLELKPDHPNRPLWACGN 70
Query: 184 GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
G IFLE+FSP+Y+HA+DFLIAIAEPVCRPE +HE + P ++ V
Sbjct: 71 GRIFLETFSPLYKHAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV 116
>gi|85084541|ref|XP_957329.1| DNA repair helicase RAD25 [Neurospora crassa OR74A]
gi|28918419|gb|EAA28093.1| DNA repair helicase RAD25 [Neurospora crassa OR74A]
Length = 862
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/333 (56%), Positives = 245/333 (73%), Gaps = 12/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FRRV++ ++SH KLGLTATLLREDDKI+ LNFLIGPKLYEANW+EL ++
Sbjct: 491 LDEVHVVPADVFRRVISSIKSHSKLGLTATLLREDDKISHLNFLIGPKLYEANWMELSEK 550
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM EFY EYL + + LY MNP K++A QYLI YHE RGDK I
Sbjct: 551 GHIAKVQCAEVWCPMPTEFYDEYLRANSRMKRTLYAMNPRKFQACQYLINYHEARGDKII 610
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA+K+NK +IYG T Q+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 611 VFSDELYSLKQYALKLNKVFIYGGTGQAERMQVLENFQHNPQVNTLFLSKIGDTSLDLPE 670
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 671 ATCLIQISSHFGSRRQEAQRLGRILRAKRRNDV-GFNAFFYSLVSKDTQEMYYSSKRQAF 729
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG--- 511
L++QGY++KVIT+LA +E + ++T E+ +LLQ+ L +E A+++ ++ G
Sbjct: 730 LVDQGYAFKVITQLANIENTPDLAFATAQERRELLQRTLVDNEKGAEDDVETDDLFGKVG 789
Query: 512 --------VSGGFKRSGGTMASLSGADDAVYHE 536
+ +R GT+ LSG D Y E
Sbjct: 790 RGRGGAKGRAAAVRRMAGTLGELSGGQDMAYIE 822
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + I FT+E+K+K G
Sbjct: 394 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTAESKNKFSGN 453
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM+++ ++RS ++ + M +L+++EWG+MLLD+
Sbjct: 454 TGIIVTTYSMVTNNRERSHDSKKMMDFLKSREWGLMLLDE 493
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G +D+ + + LKPDH +PLW+ P G I LE FSP DFL+ IAEP RP +HE
Sbjct: 102 GKRDF-SYLNLKPDHDQKPLWIDPEKGTIILEKFSPDADRVTDFLVTIAEPKSRPHFLHE 160
Query: 218 VHTIPAKMFRRVLTIVQS 235
++ V +QS
Sbjct: 161 YQLTAHSLYAGVSIGLQS 178
>gi|361127562|gb|EHK99526.1| putative DNA repair helicase RAD25 [Glarea lozoyensis 74030]
Length = 773
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/341 (55%), Positives = 249/341 (73%), Gaps = 13/341 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL +
Sbjct: 410 LDEVHVAPANVFRKVTSTIKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELAED 469
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM+ EFY EYL + K+ L++ MNP K++A Q+LI YHE+RGDK I
Sbjct: 470 GHIARVQCAEVWCPMTTEFYSEYLKLPSKKKPLMWTMNPRKFQAAQFLIDYHEKRGDKII 529
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DN+FALK YA K+NK +IYG T +ER++IL+NF+ N K+NT+F+SK+ DTS DLPE
Sbjct: 530 VFADNIFALKAYATKLNKAFIYGDTGNAERMRILENFQHNDKINTLFLSKIGDTSLDLPE 589
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 590 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSSKRQAF 648
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT L G+++ + ++T E+ +LLQ +L A++ D + + ++ +
Sbjct: 649 LVDQGYAFKVITHLQGIDDLPDLAFNTPAERRELLQTILLANDADLELDDRGDDLFHTND 708
Query: 515 G------------FKRSGGTMASLSGADDAVYHESRFSNVK 543
G +R+ G ++ L+G D Y E S K
Sbjct: 709 GKSQAMKKKKKANARRTAGALSDLAGGQDMAYVEQNKSKSK 749
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K ++LC S +SV QW+ +F WS + + I FTS+ K K G
Sbjct: 313 AGKTLVGITAACTIKKGVIILCTSSMSVHQWRSEFLKWSNINPNDIAVFTSDNKGKFSGS 372
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VT+YSM++ T KRS+EA++ M+++ +EWG+M+LD+
Sbjct: 373 TGIIVTSYSMVAQTGKRSYEANKMMEFITKREWGLMILDE 412
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ M LKPDH +RP+W+ P G I +ESF+ A DFL +AEP+ RP+HI
Sbjct: 23 FGNNDF-TWMNLKPDHANRPMWIDPKKGRIIVESFAKYKEQALDFLTTVAEPLSRPKHIF 81
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 82 EFALTPHSLYAAV 94
>gi|336271467|ref|XP_003350492.1| hypothetical protein SMAC_02205 [Sordaria macrospora k-hell]
gi|380090156|emb|CCC11983.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 867
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/333 (57%), Positives = 245/333 (73%), Gaps = 12/333 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FRRV++ ++SH KLGLTATLLREDDKI+ LNFLIGPKLYEANW+EL ++
Sbjct: 494 LDEVHVVPADVFRRVISSIKSHSKLGLTATLLREDDKISHLNFLIGPKLYEANWMELSEK 553
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM EFY EYL + + LY MNP K++A QYLI YHE RGDK I
Sbjct: 554 GHIAKVQCAEVWCPMPTEFYDEYLRANSRMKRTLYAMNPRKFQACQYLINYHEARGDKII 613
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA+K+NK +IYG T Q+ER+Q+L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 614 VFSDELYSLKQYALKLNKVFIYGGTGQAERMQVLENFQHNPAVNTLFLSKIGDTSLDLPE 673
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 674 ATCLIQISSHFGSRRQEAQRLGRILRAKRRNDV-GFNAFFYSLVSKDTQEMYYSSKRQAF 732
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLA----ASETDADEERVAGEV- 509
L++QGY++KVIT+LA +E + ++T E+ +LLQ+ L +E D + + + G+V
Sbjct: 733 LVDQGYAFKVITQLANIENTPDLAFATAQERRELLQRTLVDNEKGTEDDVETDDLFGKVG 792
Query: 510 ------GGVSGGFKRSGGTMASLSGADDAVYHE 536
G + +R GT+ LSG D Y E
Sbjct: 793 RGRGGAKGRAAAVRRMAGTLGELSGGQDMAYIE 825
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + I FT+E+K+K G
Sbjct: 397 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTAESKNKFSGN 456
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM+++ ++RS ++ + M +L+++EWG+MLLD+
Sbjct: 457 TGIIVTTYSMVTNNRERSHDSKKMMDFLKSREWGLMLLDE 496
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G +D+ + + LKPDH +PLW+ P G I LE FSP DFL+ IAEP RP +HE
Sbjct: 102 GKRDF-SYLNLKPDHDQKPLWIDPEKGTIILEKFSPDADRVTDFLVTIAEPKSRPHFLHE 160
Query: 218 VHTIPAKMFRRVLTIVQS 235
++ V +QS
Sbjct: 161 YQLTAHSLYAGVSIGLQS 178
>gi|148905942|gb|ABR16132.1| unknown [Picea sitchensis]
Length = 772
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/331 (59%), Positives = 247/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 409 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 468
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 469 GFIANVQCAEVWCPMTREFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 528
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS SER +IL FK +P VNT+F+SKV D S D+
Sbjct: 529 IIVFADNLFALTEYAMKLRKPMIYGATSHSERTRILYAFKHSPDVNTVFLSKVGDNSIDI 588
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 589 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSNDTQEMY 648
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + ++Y T ++Q LL +VL A + E++
Sbjct: 649 YSTKRQQFLIDQGYSFKVITSLPPPDTGADLNYHTLEDQLALLTKVLNAGDDAVGLEQLE 708
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ ++ +RS G+M+++SGA VY E
Sbjct: 709 EDADDITLLKARRSVGSMSAMSGASGMVYME 739
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C +RK L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 312 AGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 371
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 372 VGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 411
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
D +D+ ++M LKPDH +RPLWV +G IFLE+FS +Y+ A+DFLIAIAEPVCRPE +
Sbjct: 44 DGLQKRDF-SKMELKPDHFNRPLWVCSDGRIFLETFSALYKQAYDFLIAIAEPVCRPESM 102
Query: 216 HEVHTIPAKMFRRV 229
HE + P ++ V
Sbjct: 103 HEYNLTPHSLYAAV 116
>gi|171686848|ref|XP_001908365.1| hypothetical protein [Podospora anserina S mat+]
gi|170943385|emb|CAP69038.1| unnamed protein product [Podospora anserina S mat+]
Length = 859
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/337 (55%), Positives = 244/337 (72%), Gaps = 16/337 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FRRV++ ++SH KLGLTATLLREDDKI+ LNFLIGPKLYEANW+EL ++
Sbjct: 483 LDEVHVVPADVFRRVISSIKSHSKLGLTATLLREDDKISHLNFLIGPKLYEANWMELSQQ 542
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWC M PEFY EYL + + LY MNP K++A QYLI YHE RGDK I
Sbjct: 543 GHIAKVQCAEVWCSMPPEFYDEYLRANSHMKRTLYAMNPRKFQACQYLINYHEARGDKII 602
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP VNT+F+SK+ DTS DLPE
Sbjct: 603 VFSDELYSLKQYALKLKKVFIYGGTGQAERMQVLENFQHNPDVNTLFLSKIGDTSLDLPE 662
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 663 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 721
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG--- 511
L++QGY++KVIT+LA + + + ++T E+ +LLQ+ L +E +++ ++ G
Sbjct: 722 LVDQGYAFKVITQLANINDTPDLAFATPQERRELLQRTLVDNEKGFEQDAETDDLFGKPS 781
Query: 512 ------------VSGGFKRSGGTMASLSGADDAVYHE 536
G +R+ GT+ LSG D Y E
Sbjct: 782 GRRGAGGARGRKAGNGVRRTAGTLGELSGGQDMAYIE 818
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC S +SV QW+ +F WS + I FT+++K+K G
Sbjct: 386 AGKTLVGITAACTIRKGVIVLCTSSMSVVQWRQEFLKWSNINPEDIAVFTADSKNKFSGS 445
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++++++RS ++ + M +L+ +EWG+MLLD+
Sbjct: 446 TGIIVTTYSMVTNSRERSHDSKKMMDFLRGREWGLMLLDE 485
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
F +DY + LKPDH++RPLW+ P+G I LE FSP+ A DFLI IAEP RP +HE
Sbjct: 99 FKKRDY-SHYQLKPDHQNRPLWIEPDGTIVLERFSPLSEQATDFLITIAEPKSRPSLLHE 157
Query: 218 VHTIPAKMFRRV 229
++ V
Sbjct: 158 YRITTHSLYAAV 169
>gi|255537537|ref|XP_002509835.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
gi|223549734|gb|EEF51222.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
Length = 768
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/331 (59%), Positives = 246/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+++ +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 405 MDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 464
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 465 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 524
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS +ER +ILQ FK + VNT+F+SKV D S D+
Sbjct: 525 IIVFADNLFALTEYAMKLRKPMIYGATSHAERTKILQAFKTSKDVNTVFLSKVGDNSIDI 584
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 585 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 644
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L ++ + Y DEQ LL +VL A + E++
Sbjct: 645 YSTKRQQFLIDQGYSFKVITSLPPLDSGPDLSYYHLDEQLALLAKVLNAGDDAVGLEQLE 704
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ ++ +RS G+M+++SGA VY E
Sbjct: 705 EDADDIALHKARRSMGSMSAMSGAKGMVYME 735
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QF+LWST + ICRFTS++K++ G
Sbjct: 308 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFQLWSTIREEQICRFTSDSKERFQGN 367
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 368 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 407
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 154 PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
P+D G K +++ LK DH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 41 PDDGEGKKKDFSKLELKLDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPE 100
Query: 214 HIHEVHTIPAKMFRRV 229
+HE + P ++ V
Sbjct: 101 SMHEYNLTPHSLYAAV 116
>gi|389638922|ref|XP_003717094.1| DNA repair helicase RAD25 [Magnaporthe oryzae 70-15]
gi|351642913|gb|EHA50775.1| DNA repair helicase RAD25 [Magnaporthe oryzae 70-15]
gi|440473086|gb|ELQ41908.1| DNA repair helicase RAD25 [Magnaporthe oryzae Y34]
gi|440478289|gb|ELQ59131.1| DNA repair helicase RAD25 [Magnaporthe oryzae P131]
Length = 835
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/325 (60%), Positives = 241/325 (74%), Gaps = 13/325 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PAKMFRRV + ++SH KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL
Sbjct: 472 LDEVHVAPAKMFRRVTSALKSHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSLG 531
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFYREYL + + LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 532 GHIARVQCAEVWCPMPTEFYREYLRSTSHHKALLYIMNPMKFQACQYLINYHEARGDKII 591
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA ++K IYG TS SER IL+NF+ NP++NT+F+SK+ DTS DLPE
Sbjct: 592 VFSDNVYALKKYASVLSKCMIYGGTSNSERQLILKNFQHNPEINTLFLSKIGDTSLDLPE 651
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 652 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTTEMYYSAKRQAF 710
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--TDADEE--------R 504
L++QGY++KVIT+LA ME + Y+T + + +LL+++ +E T+ DEE +
Sbjct: 711 LVDQGYAFKVITQLANMENIPDLKYNTAESRLELLREIQIENEKQTEGDEEIDDLFHSGK 770
Query: 505 VAGEVGGVSGGFKRSGGTMASLSGA 529
+AG+ G +R G M SG
Sbjct: 771 IAGK--GRKSNVRRMAGRMDEYSGG 793
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 75/109 (68%), Gaps = 3/109 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+++ +VLC S +SV QW+ +F WS + I FTS+ K K
Sbjct: 374 AGKTLVGITAACTIKRGVIVLCTSTMSVVQWRDEFLKWSNIAPADIVAFTSDDKQKFNSE 433
Query: 97 CGILVTTYSMISHT-QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
GI+V TY+MI+H +KRS E + ++WLQ++EWG+M+LD+ V VA K
Sbjct: 434 TGIVVATYNMITHDKKKRSHETLKILEWLQSREWGLMILDE-VHVAPAK 481
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G +DY + + LKPDH +RPLW+ P+ G I LESF+P+ A DFLI IAEP RP +HE
Sbjct: 88 GKRDY-SYLKLKPDHANRPLWINPDKGIIILESFNPLAEQAQDFLITIAEPQSRPTFLHE 146
>gi|407925762|gb|EKG18743.1| Xeroderma pigmentosum group B protein (XP-B) [Macrophomina
phaseolina MS6]
Length = 763
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/328 (60%), Positives = 240/328 (73%), Gaps = 7/328 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MF RV V SH KLGLTATLLREDDKI DLNFLIGPKLYEANW EL +
Sbjct: 403 LDEVHVVPAEMFSRVTHAVPSHAKLGLTATLLREDDKINDLNFLIGPKLYEANWQELSEN 462
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GFIA+V C+EVWC M+ EFY EYL KT +K+ LLY MNP K++A Q+LI YHE+RGDKT
Sbjct: 463 GFIAKVICSEVWCQMTTEFYAEYLKAKTVNKKSLLYTMNPRKFQACQFLIDYHEKRGDKT 522
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+ALK YA + K +IYG TS ER Q+LQNF N KV TIF+SK+ DTS DLP
Sbjct: 523 IVFSDNVYALKIYAKTLGKAFIYGGTSNQERQQVLQNFMYNEKVKTIFLSKIGDTSLDLP 582
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ
Sbjct: 583 EATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTTEMFYSSKRQA 641
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVS 513
FL++QGYS++VIT+L G+E G+ ++T E+ +LL V+ ++ + E+ G
Sbjct: 642 FLVDQGYSFRVITRLQGIENLPGLVHATPQERRELLTDVMLQNDVAGEVEKNDDLFGRRQ 701
Query: 514 G-----GFKRSGGTMASLSGADDAVYHE 536
G G +R+ GT++ LSG D Y E
Sbjct: 702 GNRFKKGVRRTAGTLSELSGGQDMAYME 729
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CTVRK +VLC S +SV QW+ +F WS + S I FT+E KD G
Sbjct: 306 AGKTLVGITAACTVRKGCIVLCTSTMSVLQWRDEFIKWSNINPSDIAVFTAEQKDFFSGN 365
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVP 154
G+L++TY+MI+ + RS+++ + M ++ +EWG+M+LD+ V V + + AVP
Sbjct: 366 TGVLISTYNMIAMNRTRSYDSQKVMDFITQREWGLMVLDE-VHVVPAEMFSRVTHAVP 422
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
F DY + + LK +H RPLWV P G I LESFSP ++ A FLI IAEP R +HE
Sbjct: 27 FQGNDY-SSLDLKKEHADRPLWVTPEGKIILESFSPYFKTAERFLINIAEPQSRVSLMHE 85
Query: 218 VHTIPAKMFRRV 229
+F V
Sbjct: 86 YSLTANSLFAAV 97
>gi|356528573|ref|XP_003532875.1| PREDICTED: DNA repair helicase XPB1-like [Glycine max]
Length = 768
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/340 (59%), Positives = 250/340 (73%), Gaps = 15/340 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 405 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 464
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S KR LYVMNPNK+RA ++LI +HE RGDK
Sbjct: 465 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINFHEGTRGDK 524
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +ILQ FK + +NTIF+SKV D S D+
Sbjct: 525 IIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDINTIFLSKVGDNSIDI 584
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 585 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSIDTQEMY 644
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV- 505
YS KRQ+FLI+QGYS+KVIT L +E + Y ++Q LL +VL+A + E++
Sbjct: 645 YSTKRQQFLIDQGYSFKVITSLPPPDEGPNLSYHRLEDQLALLGKVLSAGDDQVGLEQLD 704
Query: 506 --AGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK 543
A E+ S +RS G+M+++SGA VY E +S V+
Sbjct: 705 EDADEIALQSA--RRSQGSMSAMSGAKGMVYME--YSTVR 740
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST + ICRFTS++K++ G
Sbjct: 308 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGN 367
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 368 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 407
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 10/106 (9%)
Query: 124 LQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN 183
++ + GI DDG + A +D+ KD+ +++ LKPDH +RPLW N
Sbjct: 21 FEDPQKGIAYDDDGY---------GGEDAYDDDDGKTKDF-SKLELKPDHTNRPLWACGN 70
Query: 184 GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
G IFLE+FSP+Y+HA+DFLIAIAEPVCRPE +HE + P ++ V
Sbjct: 71 GRIFLETFSPLYKHAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV 116
>gi|222619087|gb|EEE55219.1| hypothetical protein OsJ_03086 [Oryza sativa Japonica Group]
Length = 766
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/331 (59%), Positives = 245/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LY MNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL FK + VNTIF+SKV D S D+
Sbjct: 527 IIVFADNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L EE + Y T ++Q +LL Q+L+A + E +
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPEELPNLKYYTLNDQLELLAQLLSARDDMIGIEHLE 706
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G+M++ SG+ VY E
Sbjct: 707 EDSDGKALMKARRSAGSMSAFSGSGGMVYME 737
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 310 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFRGM 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 409
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 46 EVKKRDF-TKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 104
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
E + P ++ V +++ + + + L
Sbjct: 105 EYNLTPHSLYAAVSVGLETSTIISVMSKL 133
>gi|297805512|ref|XP_002870640.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
lyrata]
gi|297316476|gb|EFH46899.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
lyrata]
Length = 767
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/331 (59%), Positives = 247/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED+KI DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 527 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +VL A + E++
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDLVGLEQLE 706
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ G++ +RS G+M+++SGA VY E
Sbjct: 707 EDTDGMALQKARRSMGSMSAMSGAKGRVYME 737
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW +QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIRDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+MI+ KRS EA++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDE 409
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 149 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 208
+D+ E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEP
Sbjct: 38 EDSRDGEGEEKKRDF-TELELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEP 96
Query: 209 VCRPEHIHEVHTIPAKMFRRV 229
VCRPE +HE P ++ V
Sbjct: 97 VCRPESMHEYSLTPHSLYAAV 117
>gi|225426192|ref|XP_002273444.1| PREDICTED: DNA repair helicase XPB1-like [Vitis vinifera]
Length = 771
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/339 (58%), Positives = 247/339 (72%), Gaps = 9/339 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 408 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 467
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 468 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 527
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNTIF+SKV D S D+
Sbjct: 528 IIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILEAFKTHKDVNTIFLSKVGDNSIDI 587
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 588 PEANVIIQISSHAGSRRQEAQRLGRILRAKGRLQDRLAGGKEEYNAFFYSLVSTDTQEMY 647
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+K+IT L + + Y DEQ LL +VL+A + E++
Sbjct: 648 YSTKRQQFLIDQGYSFKIITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLD 707
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHESRFSNVKH 544
+ ++ +RS G+M+++SGA VY E KH
Sbjct: 708 EDADDIALQKARRSVGSMSAMSGASGMVYMEYNTGRNKH 746
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C +RK L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 311 AGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGN 370
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 371 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 410
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 148 KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAE 207
+DD E E +D+ ++ LK DH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAE
Sbjct: 38 EDDYRDGEKEGKKRDF-TKLELKVDHSNRPLWACADGRIFLETFSPLYKQAYDFLIAIAE 96
Query: 208 PVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
PVCRPE +HE + P ++ V +++ + + + L
Sbjct: 97 PVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKL 134
>gi|308802017|ref|XP_003078322.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri]
gi|116056774|emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri]
Length = 812
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/354 (53%), Positives = 256/354 (72%), Gaps = 16/354 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+ I ++HCKLGLTATL+REDDK+ LNFLIGPKLYEANWL+LQ+
Sbjct: 436 LDEVHVVPAAMFRKVIGITKAHCKLGLTATLVREDDKVDHLNFLIGPKLYEANWLDLQRD 495
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK-TSKRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
G IA VQC EVWCPM+ EF+R+Y ++K+ +LY MNPNK+ A Q+L+ +HE +R DK
Sbjct: 496 GHIANVQCVEVWCPMTAEFFRKYCDSNYSNKKQVLYCMNPNKFMACQFLMQFHEQQRKDK 555
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSDN+FAL+ YA + +P IYG TS +ER ++L FK + ++NTIF+SKV D S D+
Sbjct: 556 VIVFSDNIFALREYATALRRPLIYGDTSHAERTRVLHAFKYSNEINTIFLSKVGDNSIDI 615
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAI------AEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILR K + A+E+NAFFY+LVS DT EM
Sbjct: 616 PEANVIIQISSHAGSRRQEAQRLGRILRPKAAQLSGKKTNADEHNAFFYSLVSTDTAEMY 675
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI QGY++KV+T L G ++++ + YST+++Q LL +VL+A E +A EE +
Sbjct: 676 YSTKRQQFLIQQGYAFKVVTDLIGPQDKQQLMYSTQEKQLDLLAKVLSAGEAEAGEEVLP 735
Query: 507 GEVGGV------SGGFKRSGGTMASLSGADDAV--YHESRFSNVKHPLFKKFRG 552
+ + +G +R+ G+M +LSGAD A + R K P F++ G
Sbjct: 736 DDEDAIRKAQKPAGAARRTAGSMTALSGADGAYMEFDAQRGGVKKKPSFQRASG 789
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 5/114 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---P 94
AGKSL G+ A +RK L LC S VSV+QW QFKLW+ D I RFTS+ KD+ P
Sbjct: 337 AGKSLTGIAAAARIRKSCLCLCTSSVSVDQWSAQFKLWTNLTDLNIVRFTSQNKDEFPPP 396
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
+ VTTY+M+S KRS +++ ++ ++++EWG MLLD+ VP A + V
Sbjct: 397 GEACVCVTTYNMVSAGGKRSEGSERILEAIRSREWGCMLLDEVHVVPAAMFRKV 450
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LKPDH +RPLWV +G IFLESFSPVY+ A+DFLI++AEPVCRP ++HE P ++
Sbjct: 64 LKPDHANRPLWVCDDGRIFLESFSPVYKAAYDFLISVAEPVCRPANMHEYVLTPHSLYAA 123
Query: 229 VLTIVQSHCKLGL-TATLLREDDKIA 253
V +GL T+T+L D+++
Sbjct: 124 V--------SVGLETSTILSVLDRLS 141
>gi|218188886|gb|EEC71313.1| hypothetical protein OsI_03346 [Oryza sativa Indica Group]
Length = 766
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/331 (59%), Positives = 244/331 (73%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LY MNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL FK + VNTIF+SKV D S D+
Sbjct: 527 IIVFADNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L EE + Y T ++Q +LL Q L+A + E +
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPEELPNLKYYTLNDQLELLAQSLSARDDMIGIEHLE 706
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G+M++ SG+ VY E
Sbjct: 707 EDSDGKALMKARRSAGSMSAFSGSGGMVYME 737
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 310 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFRGM 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 409
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 46 EVKKRDF-TKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 104
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
E + P ++ V +++ + + + L
Sbjct: 105 EYNLTPHSLYAAVSVGLETSTIISVMSKL 133
>gi|297805510|ref|XP_002870639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316475|gb|EFH46898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 779
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/346 (57%), Positives = 255/346 (73%), Gaps = 11/346 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 419 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 478
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 479 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 538
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 539 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDI 598
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 599 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 658
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +VL A + E++
Sbjct: 659 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVLNAGDDLVGLEQLE 718
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
+ G++ +RS G+M+ +SGA VY E +++ +H ++F+
Sbjct: 719 EDTDGMALQKARRSMGSMSLMSGAKGMVYME--YNSGRHKSGQQFK 762
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 322 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 381
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ + KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 382 AGVVVTTYNMVAFSGKRSEESEKIIEEMRNREWGLLLMDE 421
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 56 EGEEKKRDF-TKLELKPDHVNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 114
Query: 215 IHEVHTIPAKMFRRV 229
+HE + P ++ V
Sbjct: 115 MHEYNLTPHSLYAAV 129
>gi|156050235|ref|XP_001591079.1| hypothetical protein SS1G_07704 [Sclerotinia sclerotiorum 1980]
gi|154692105|gb|EDN91843.1| hypothetical protein SS1G_07704 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 847
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/351 (55%), Positives = 250/351 (71%), Gaps = 19/351 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL +
Sbjct: 483 LDEVHVVPAAIFRKVTSSIKTHSKLGLTATLLREDDKIEDLNFLIGPKLYEANWMELAAQ 542
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM+ EF+ EYL + K+ L+ MNP K++A Q+LI YHE+RGDK I
Sbjct: 543 GHIARVQCAEVWCPMTTEFHSEYLKAPSRKQGLISTMNPRKFQACQFLIDYHEKRGDKII 602
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL YA K+NK +IYG T+Q+ERI+IL+NF+ NP +NT+F+SK+ DTS DLPE
Sbjct: 603 VFSDNVFALHVYASKLNKVFIYGGTAQAERIRILENFQHNPDINTLFLSKIGDTSLDLPE 662
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 663 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTKEMYYSSKRQAF 721
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG--- 511
L++QGY++K IT L G+E+ G+ ++T ++ +LLQ V+ + DEER ++
Sbjct: 722 LVDQGYAFKAITHLQGIEDLPGLAFNTPQDRRELLQNVMLH---NMDEERFQEDLRDDLF 778
Query: 512 ----------VSGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFRG 552
+R+ G +A L+G D Y E S K KK +G
Sbjct: 779 HRNDGKPRPKKKSNVRRTAGKLADLAGGQDMAYIEQNRSRNKD--LKKNKG 827
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + + I FTS+ K+K
Sbjct: 386 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPADIAVFTSDHKEKFTRS 445
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+VTTYSM++ T+ R+++A + M +L ++EWG+MLLD+ VP A + V
Sbjct: 446 TGIIVTTYSMVTQTRARAFDAQKMMDFLTSREWGLMLLDEVHVVPAAIFRKV 497
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LKPDH +RPLW+ P I LESFSP+ HA DFL IAEP RP +H
Sbjct: 96 FGNNDF-SYLSLKPDHANRPLWIDPQKARIILESFSPLASHAQDFLTTIAEPKSRPSFLH 154
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 155 EYALTPHSLYAAV 167
>gi|297742218|emb|CBI34367.3| unnamed protein product [Vitis vinifera]
Length = 850
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/339 (58%), Positives = 247/339 (72%), Gaps = 9/339 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 487 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 547 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 606
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNTIF+SKV D S D+
Sbjct: 607 IIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILEAFKTHKDVNTIFLSKVGDNSIDI 666
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 667 PEANVIIQISSHAGSRRQEAQRLGRILRAKGRLQDRLAGGKEEYNAFFYSLVSTDTQEMY 726
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+K+IT L + + Y DEQ LL +VL+A + E++
Sbjct: 727 YSTKRQQFLIDQGYSFKIITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLD 786
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHESRFSNVKH 544
+ ++ +RS G+M+++SGA VY E KH
Sbjct: 787 EDADDIALQKARRSVGSMSAMSGASGMVYMEYNTGRNKH 825
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C +RK L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 390 AGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGN 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 450 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 489
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 148 KDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAE 207
+DD E E +D+ ++ LK DH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAE
Sbjct: 38 EDDYRDGEKEGKKRDF-TKLELKVDHSNRPLWACADGRIFLETFSPLYKQAYDFLIAIAE 96
Query: 208 PVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
PVCRPE +HE + P ++ V +++ + + + L
Sbjct: 97 PVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKL 134
>gi|336469324|gb|EGO57486.1| DNA repair helicase RAD25 [Neurospora tetrasperma FGSC 2508]
gi|350291041|gb|EGZ72255.1| DNA repair helicase RAD25 [Neurospora tetrasperma FGSC 2509]
Length = 864
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/335 (56%), Positives = 245/335 (73%), Gaps = 14/335 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FRRV++ ++SH KLGLTATLLREDDKI+ LNFLIGPKLYEANW+EL ++
Sbjct: 491 LDEVHVVPADVFRRVISSIKSHSKLGLTATLLREDDKISHLNFLIGPKLYEANWMELSEK 550
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM EFY EYL + + LY MNP K++A QYLI YHE RGDK I
Sbjct: 551 GHIAKVQCAEVWCPMPTEFYDEYLRANSRMKRTLYAMNPRKFQACQYLINYHEARGDKII 610
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA+K+NK +IYG T Q+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 611 VFSDELYSLKQYALKLNKVFIYGGTGQAERMQVLENFQHNPQVNTLFLSKIGDTSLDLPE 670
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 671 ATCLIQISSHFGSRRQEAQRLGRILRAKRRNDV-GFNAFFYSLVSKDTQEMYYSSKRQAF 729
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV----- 509
L++QGY++KVIT+LA +E + ++T E+ +LLQ+ L +E A+++ ++
Sbjct: 730 LVDQGYAFKVITQLANIENTPDLAFATAQERRELLQRTLVDNEKGAEDDVETDDLFGKVG 789
Query: 510 --------GGVSGGFKRSGGTMASLSGADDAVYHE 536
G + +R GT+ LSG D Y E
Sbjct: 790 RGRGGGGAKGRAAAVRRMAGTLGELSGGQDMAYIE 824
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + I FT+E+K+K G
Sbjct: 394 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTAESKNKFSGN 453
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM+++ ++RS ++ + M +L+++EWG+MLLD+
Sbjct: 454 TGIIVTTYSMVTNNRERSHDSKKMMDFLKSREWGLMLLDE 493
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G +D+ + + LKPDH +PLW+ P G I LE FSP DFL+ IAEP RP +HE
Sbjct: 102 GKRDF-SYLNLKPDHDQKPLWIDPEKGTIILEKFSPDADRVTDFLVTIAEPKSRPHFLHE 160
Query: 218 VHTIPAKMFRRVLTIVQS 235
++ V +QS
Sbjct: 161 YQLTAHSLYAGVSIGLQS 178
>gi|47606403|gb|AAT36215.1| DNA repair and transcription factor XPB1 [Arabidopsis thaliana]
Length = 767
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/346 (56%), Positives = 255/346 (73%), Gaps = 11/346 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 527 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +V+ A + E++
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLE 706
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
+ G++ +RS G+M+ +SG+ VY E +++ +H ++F+
Sbjct: 707 EDTDGMALQKARRSMGSMSVMSGSKGMVYME--YNSGRHKSGQQFK 750
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDE 409
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 44 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 102
Query: 215 IHEVHTIPAKMFRRV 229
+HE + P ++ V
Sbjct: 103 MHEYNLTPHSLYAAV 117
>gi|449530460|ref|XP_004172213.1| PREDICTED: DNA repair helicase XPB1-like, partial [Cucumis sativus]
Length = 725
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/331 (58%), Positives = 245/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+++ +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 363 MDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 422
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 423 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 482
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 483 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDI 542
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 543 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 602
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y D+Q LL +VL A + E++
Sbjct: 603 YSTKRQQFLIDQGYSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLE 662
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ ++ +RS G+M+++SGA+ VY E
Sbjct: 663 DDADQIALDAARRSKGSMSAMSGANGMVYME 693
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A +RK L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 266 AGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 325
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 326 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 365
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
+ E G +D+ +++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 1 DKEGGKRDF-SKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 59
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
+HE + P ++ V +++ + + + L
Sbjct: 60 MHEYNLTPHSLYAAVSVGLETETIIAVLSKL 90
>gi|449452290|ref|XP_004143892.1| PREDICTED: DNA repair helicase XPB1-like [Cucumis sativus]
Length = 768
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/331 (58%), Positives = 245/331 (74%), Gaps = 9/331 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+++ +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 406 MDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 465
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 466 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 525
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 526 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDI 585
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 586 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 645
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y D+Q LL +VL A + E++
Sbjct: 646 YSTKRQQFLIDQGYSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLE 705
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
+ ++ +RS G+M+++SGA+ VY E
Sbjct: 706 DDADQIALDAARRSKGSMSAMSGANGMVYME 736
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A +RK L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 309 AGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 368
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 369 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 408
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
+ E G +D+ +++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 44 DKEGGKRDF-SKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 102
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
+HE + P ++ V +++ + + + L
Sbjct: 103 MHEYNLTPHSLYAAVSVGLETETIIAVLSKL 133
>gi|9758046|dbj|BAB08509.1| DNA excision repair cross-complementing protein; similar to human
Xeroderma pigmentosum group B DNA repair protein
[Arabidopsis thaliana]
Length = 755
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/346 (56%), Positives = 255/346 (73%), Gaps = 11/346 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 395 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 454
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 455 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 514
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 515 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDI 574
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 575 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 634
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +V+ A + E++
Sbjct: 635 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLE 694
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
+ G++ +RS G+M+ +SG+ VY E +++ +H ++F+
Sbjct: 695 EDTDGMALQKARRSMGSMSVMSGSKGMVYME--YNSGRHKSGQQFK 738
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 298 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 357
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 358 AGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDE 397
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 32 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 90
Query: 215 IHEVHTIPAKMFRRV 229
+HE + P ++ V
Sbjct: 91 MHEYNLTPHSLYAAV 105
>gi|18422091|ref|NP_568592.1| DNA repair helicase XPB1 [Arabidopsis thaliana]
gi|57013137|sp|Q38861.3|XPB1_ARATH RecName: Full=DNA repair helicase XPB1; AltName: Full=ERCC3 homolog
1; AltName: Full=Protein araXPB; AltName: Full=RAD25
homolog 1; Short=AtXPB1; AltName: Full=XPB homolog 1
gi|11771735|gb|AAC49987.2| putative DNA repair protein and transcription factor [Arabidopsis
thaliana]
gi|14517424|gb|AAK62602.1| AT5g41370/MYC6_8 [Arabidopsis thaliana]
gi|21360401|gb|AAM47316.1| AT5g41370/MYC6_8 [Arabidopsis thaliana]
gi|332007287|gb|AED94670.1| DNA repair helicase XPB1 [Arabidopsis thaliana]
Length = 767
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/346 (56%), Positives = 255/346 (73%), Gaps = 11/346 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 527 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +V+ A + E++
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLE 706
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
+ G++ +RS G+M+ +SG+ VY E +++ +H ++F+
Sbjct: 707 EDTDGMALQKARRSMGSMSVMSGSKGMVYME--YNSGRHKSGQQFK 750
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDE 409
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 44 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 102
Query: 215 IHEVHTIPAKMFRRV 229
+HE + P ++ V
Sbjct: 103 MHEYNLTPHSLYAAV 117
>gi|189210050|ref|XP_001941357.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187977450|gb|EDU44076.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 803
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/331 (57%), Positives = 240/331 (72%), Gaps = 12/331 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F++V + SH KLGLTATLLREDDKI DLNFLIGPKLYEANW EL ++G
Sbjct: 444 EVHVVPANIFKKVTYEIASHAKLGLTATLLREDDKIDDLNFLIGPKLYEANWQELSEQGH 503
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA+VQCAEVWC M+PEFY E+L + KR LL +MNP K++A Q+LI YHE RGDK IV
Sbjct: 504 IAKVQCAEVWCQMTPEFYTEWLKPSSLQKRALLSIMNPKKFQACQFLINYHESRGDKIIV 563
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
FSDNV+AL+ Y+ K+ K YIYG T Q ER++IL+NF+ N ++NTIF+SK+ DTS DLPEA
Sbjct: 564 FSDNVYALEKYSRKLGKAYIYGATPQQERLRILENFQHNDQINTIFLSKIGDTSLDLPEA 623
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ FL
Sbjct: 624 TCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAFL 682
Query: 456 INQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV--- 512
++QGY++KVIT+L G++ + ++T E+ +LL V+ A E DA ER+ + G
Sbjct: 683 VDQGYAFKVITRLEGLDSFPQLAFATPQERRELLTDVVLAKEEDAKAERIEDDAFGTKYA 742
Query: 513 -------SGGFKRSGGTMASLSGADDAVYHE 536
G +R+ GT++ SG Y E
Sbjct: 743 SQKGNRKKNGVRRAAGTLSEFSGGQTMAYME 773
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA C V+K +VLC S +SV QW+ +F WS + I FT++ K + P
Sbjct: 345 AGKTLVGITAACGVKKSVMVLCTSAMSVVQWRAEFIKWSNINPEDIAVFTADNKTRFPRQ 404
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMIS+ +KRS +A++ MQ+++ +EWG+++ D+
Sbjct: 405 AGIIISTYSMISNARKRSHDAEKVMQFIREREWGLLIADE 444
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 36/61 (59%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LKPDH +RPLWV G I LESF P++ A DFLI IAEP R +HE +F
Sbjct: 72 LKPDHFNRPLWVNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAA 131
Query: 229 V 229
V
Sbjct: 132 V 132
>gi|325189336|emb|CCA23856.1| DNA excision repair crosscomplementing protein similar to human
Xeroderma pigmentosum group B DNA repair protein
putative [Albugo laibachii Nc14]
Length = 811
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/355 (54%), Positives = 256/355 (72%), Gaps = 19/355 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PAKMFR+V+ + HCKLGLTATL+REDD I DLNFLIGPKLYEANW++L +
Sbjct: 459 LDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQS 518
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS--KRLLLYVMNPNKYRATQYLIAYHERRGDK 332
GF+A V C EVWCPM+ EFYREYL + KR LLYV NPNK+ A ++LI YHE+RGDK
Sbjct: 519 GFLANVSCVEVWCPMTGEFYREYLKENKNARKRALLYVANPNKFTAAEFLIQYHEKRGDK 578
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
+VFSD+VFAL+ YA K+NK YIYG T + ER+++LQ+F+ +P VN I +SKV DTS DL
Sbjct: 579 ILVFSDDVFALRLYATKLNKGYIYGGTGERERMRLLQSFRNSPLVNVICISKVGDTSIDL 638
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
PEANV+IQ+SSH GSRRQEAQRLGRILR K A +NAFFYTL+S DT EM YS KRQ
Sbjct: 639 PEANVIIQVSSHFGSRRQEAQRLGRILRPKANATG-GFNAFFYTLISTDTHEMFYSNKRQ 697
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS-ETDADEERVAGE--- 508
++L++QGY++KV+T+L + +G+ ++ ++ Q +LL++VL+A E+ A +E A
Sbjct: 698 QYLVDQGYTFKVVTELYDTKSFKGV-FTRKEAQRELLEEVLSADVESAARDENAAIRDDE 756
Query: 509 -------VGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVKHPLFK-KFRG 552
GG GG K+ ++ +LSGAD Y E + +H LF+ ++RG
Sbjct: 757 DLSRLELAGGADGGRKKKKMSLGALSGADGTKYMEYSAGSGARQRHNLFRDRYRG 811
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 73/108 (67%), Gaps = 3/108 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--KPM 95
AGK+L GVTA T++K L LC S VSVEQW QFK+W+ +S I RFTS AKD P
Sbjct: 362 AGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTSQFKMWTNIPESKIARFTSVAKDYIDP- 420
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++VTTY+MI+ KR+ +++ MQ +Q +EWG +LLD+ V AK
Sbjct: 421 NSGVIVTTYTMIAFGGKRARASEEVMQLIQGREWGSLLLDEVHVVPAK 468
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 144 KNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLI 203
KN + DDA P +F A + +KPDH SRP+WV PNG IFLE+FSP+Y+ A+DFL+
Sbjct: 70 KNDQTDDATAPYFDF------ANLQMKPDHASRPVWVCPNGRIFLEAFSPIYKQAYDFLV 123
Query: 204 AIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
AIAEPV RPE +HE P ++ V +++ L + L
Sbjct: 124 AIAEPVSRPEFLHEYKLTPYSLYAAVSVSIETESVLNVLERL 165
>gi|402086817|gb|EJT81715.1| DNA repair helicase RAD25 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 818
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/334 (56%), Positives = 242/334 (72%), Gaps = 13/334 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+ +++H KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 450 LDEVHVVPANMFRRVVGTIKAHSKLGLTATLLREDDKIEDLNFLIGPKLYEANWMELSEQ 509
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPMSPEFY +YL +RLL NP K++A QYLI YHE RGDK I
Sbjct: 510 GFIARVQCAEVWCPMSPEFYEQYLAAPPKQRLLFCATNPTKFQACQYLIKYHEARGDKII 569
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V ALK YA K+ +P++YG TS+SER QIL+ F+ +P+ NT+F+SK+ DTS DLPE
Sbjct: 570 VFSDDVAALKMYAFKLERPFLYGDTSESERQQILELFRSHPETNTLFLSKIGDTSLDLPE 629
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISS GSRRQEAQRLGRILRAK+ A +NAFFYTLVS+DT EM+++ KRQ F
Sbjct: 630 ATCLIQISSQYGSRRQEAQRLGRILRAKRRNEA-GFNAFFYTLVSKDTAEMNFASKRQAF 688
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA--DEERVAGEVGG- 511
L +QGY++KVIT+L +E+ G+ ++T E+ +LL +VL E A + E+ A E G
Sbjct: 689 LADQGYAFKVITQLKDLEKTPGLAFATAQERRELLLKVLNDKEHKALVEAEKAALEADGN 748
Query: 512 ---------VSGGFKRSGGTMASLSGADDAVYHE 536
+ +R+ G ++ G + Y E
Sbjct: 749 MFYGTDGRPMRRAARRTAGMLSDYGGGQNMAYVE 782
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVGVTA CT++K ++L S +SV QW+ +F WS + + F+S+ K+ G
Sbjct: 353 AGKTLVGVTAACTIKKGVVILATSTMSVIQWRAEFLKWSNINPDSVAVFSSDQKNTFDGN 412
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTY+M+++ +KRS ++ + M +L+N+EWG+MLLD+
Sbjct: 413 TGIIVTTYAMVTNARKRSHDSAKMMDFLKNREWGLMLLDE 452
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+D+ A + LKPDH+ RPL + G ++LE+F P+ DFLI +AEPV RP IHE
Sbjct: 74 RDFTA-LALKPDHQDRPLRIDGWGKLYLENFHPLAPRVQDFLITVAEPVSRPTFIHE 129
>gi|330948023|ref|XP_003307038.1| hypothetical protein PTT_20359 [Pyrenophora teres f. teres 0-1]
gi|311315156|gb|EFQ84865.1| hypothetical protein PTT_20359 [Pyrenophora teres f. teres 0-1]
Length = 803
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/331 (57%), Positives = 239/331 (72%), Gaps = 12/331 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F++V + SH KLGLTATLLREDDKI DLNFLIGPKLYEANW EL ++G
Sbjct: 444 EVHVVPANIFKKVTYEIASHAKLGLTATLLREDDKIDDLNFLIGPKLYEANWQELSEQGH 503
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA+VQCAEVWC M+PEFY E+L + KR LL +MNP K++A Q+LI YHE RGDK IV
Sbjct: 504 IAKVQCAEVWCQMTPEFYTEWLKPSSLQKRALLSIMNPKKFQACQFLINYHESRGDKIIV 563
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
FSDNV+AL+ Y+ K+ K YIYG T Q ER++IL+NF+ N ++NTIF+SK+ DTS DLPEA
Sbjct: 564 FSDNVYALEKYSRKLGKAYIYGATPQQERLRILENFQHNDEINTIFLSKIGDTSLDLPEA 623
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ FL
Sbjct: 624 TCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMYYSSKRQAFL 682
Query: 456 INQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV--- 512
++QGY++KVIT+L G++ + ++T E+ +LL V+ A E D ER+ + G
Sbjct: 683 VDQGYAFKVITRLEGLDSFPQLAFATPQERRELLTDVVLAKEEDGKTERIEDDAFGTKYA 742
Query: 513 -------SGGFKRSGGTMASLSGADDAVYHE 536
G +R+ GT++ SG Y E
Sbjct: 743 SQKGNRKKNGVRRAAGTLSEFSGGQTMAYME 773
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA C V+K +VLC S +SV QW+ +F WS + I FT++ K + P
Sbjct: 345 AGKTLVGITAACGVKKSVMVLCTSAMSVVQWRAEFIKWSNINPEDIAVFTADNKTRFPRS 404
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMIS+ +KRS +A++ MQ+++ +EWG+++ D+
Sbjct: 405 AGIIISTYSMISNARKRSHDAEKVMQFIREREWGLLIADE 444
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 36/61 (59%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LKPDH +RPLWV G I LESF P++ A DFLI IAEP R +HE +F
Sbjct: 72 LKPDHFNRPLWVNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMHEYQLTTHSLFAA 131
Query: 229 V 229
V
Sbjct: 132 V 132
>gi|328865979|gb|EGG14365.1| transcription factor IIH subunit [Dictyostelium fasciculatum]
Length = 810
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/280 (64%), Positives = 225/280 (80%), Gaps = 2/280 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VLT+ ++HCKLGLTATLLRED+KI DL+FLIGPKLYEANWL+LQK
Sbjct: 453 LDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDEKIQDLSFLIGPKLYEANWLDLQKA 512
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A V C+E+WC M+ EFYREYL + K+ LLY MNPNK RA +YLI YHE+RGDK
Sbjct: 513 GFLANVSCSEIWCEMTAEFYREYLTNDSQGKKKLLYTMNPNKCRACEYLIRYHEQRGDKI 572
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+ALK YA++ + +IYG TS ER+ IL+ F+ +P V TIF+SKV DTS D+P
Sbjct: 573 IVFSDNVYALKKYAIEFKRYFIYGETSGQERLSILRKFQFDPSVRTIFISKVGDTSIDIP 632
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V+IQISSH GSRRQEAQRLGRILR K + YNAFFY+LVS+DT EM YS KRQ+
Sbjct: 633 EATVIIQISSHYGSRRQEAQRLGRILRPKPKSDG-NYNAFFYSLVSKDTQEMYYSTKRQQ 691
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL 493
FLI+QGYS+KVI++L G++ E +H+S+++ Q LL +VL
Sbjct: 692 FLIDQGYSFKVISELPGLDLETDLHFSSKEAQLGLLNEVL 731
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSL G+TA CTV+K LVLC S VSVEQWK QF+LWS ++ MI +FTS+ K+K
Sbjct: 356 AGKSLSGITAACTVKKSILVLCTSAVSVEQWKFQFRLWSNIEEKMISKFTSDNKEKMYSM 415
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G+ +TTY+MI+ KRS E+ + M L +EWG++LLD+ VP A + V
Sbjct: 416 AGVTITTYTMIAFGGKRSPESLKIMNELTTREWGLVLLDEVHVVPAAMFRKV 467
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 145 NVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIA 204
N+ + P+ F KDY + +K + S+P+WV P+G IFLE+FSP+Y+ A DFL+A
Sbjct: 51 NIPQIGVGEPKGAF--KDYSKRCQIKDNIASKPIWVCPDGRIFLETFSPIYKEASDFLVA 108
Query: 205 IAEPVCRPEHIHEVHTIPAKMFRRV 229
IAEPVCRP+ IHE P ++ V
Sbjct: 109 IAEPVCRPQLIHEYQMTPFSLYAAV 133
>gi|19353930|gb|AAH24446.1| Ercc3 protein, partial [Mus musculus]
Length = 252
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/252 (73%), Positives = 213/252 (84%), Gaps = 7/252 (2%)
Query: 306 LLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERI 365
+LLY MNPNK+RA Q+LI +HERR DK IVF+DNVFALK YA+++NKPYIYGPTSQ ER+
Sbjct: 1 ILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERM 60
Query: 366 QILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425
QILQNFK NPK+NTIF+SKV DTSFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG
Sbjct: 61 QILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGM 120
Query: 426 IAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQ 485
+AEEYNAFFY+LVSQDT EM+YS KRQRFL++QGYS+KVITKLAGMEEE + +ST++EQ
Sbjct: 121 VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEE-LAFSTKEEQ 179
Query: 486 GQLLQQVLAASETDADEERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK-- 543
QLLQ+VLAA++ DA+EE VAGE G SG R GTM+SLSGADD VY E S K
Sbjct: 180 QQLLQKVLAATDLDAEEEVVAGEFGSRSGQASRRCGTMSSLSGADDTVYMEYHSSRSKAS 239
Query: 544 ----HPLFKKFR 551
HPLFK+FR
Sbjct: 240 SKHVHPLFKRFR 251
>gi|145344427|ref|XP_001416734.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576960|gb|ABO95027.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 781
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/334 (55%), Positives = 246/334 (73%), Gaps = 18/334 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+ I ++HCKLGLTATL+REDDK+ LNFLIGPKLYEANWL+LQ+
Sbjct: 402 LDEVHVVPAAMFRKVIGITKAHCKLGLTATLVREDDKVDHLNFLIGPKLYEANWLDLQRD 461
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK---TSKRLLLYVMNPNKYRATQYLIAYHE-RRG 330
G IA VQC EVWCPM+ EF+R+Y C +K+ +LY MNPNK+ A Q+L+ +HE +R
Sbjct: 462 GHIANVQCVEVWCPMTAEFFRKY--CDPNFNNKKQVLYCMNPNKFMACQFLMQFHEQQRK 519
Query: 331 DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSF 390
DK IVFSDN+FAL+ YA + +P IYG TS +ER ++L FK + ++NTIF+SKV D S
Sbjct: 520 DKVIVFSDNIFALREYATALRRPLIYGDTSHAERTRVLHAFKYSNEINTIFLSKVGDNSI 579
Query: 391 DLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAI------AEEYNAFFYTLVSQDTME 444
D+PEANV+IQISSH GSRRQEAQRLGRILR K + A+E+NAFFY+LVS DT E
Sbjct: 580 DIPEANVIIQISSHAGSRRQEAQRLGRILRPKAAQLSGKKTNADEHNAFFYSLVSTDTAE 639
Query: 445 MSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEER 504
M YS KRQ+FLI QGY++KV+T L G +++ + YST+++Q LL +VL+A E +A EE
Sbjct: 640 MYYSTKRQQFLIQQGYAFKVVTDLIGPQDKPQLMYSTQEKQLDLLAKVLSAGEAEAGEEV 699
Query: 505 VAGEVGGVS------GGFKRSGGTMASLSGADDA 532
+ + + G +R+ G++ +LSGAD A
Sbjct: 700 LPEDEDAIRQAHKPVGAARRTAGSITALSGADGA 733
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 5/114 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---P 94
AGKSL G+ A +RK L LC S VSV+QW QFKLW+ D+ I RFTS+ KD P
Sbjct: 303 AGKSLTGIAAAARIRKSCLCLCTSSVSVDQWAAQFKLWTNLTDAHIVRFTSQNKDDFPPP 362
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
+ VTTY+M+S KRS +++ ++ ++++EWG MLLD+ VP A + V
Sbjct: 363 DEACVCVTTYNMVSAGGKRSEGSERILEAIRSREWGCMLLDEVHVVPAAMFRKV 416
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
D FG D+ +++ LKPDH +RPLWV +G IFLESFSPVY+ A+DFLI++AEPVCRP ++
Sbjct: 41 DGFGENDF-SELELKPDHANRPLWVCDDGRIFLESFSPVYKAAYDFLISVAEPVCRPANM 99
Query: 216 HEVHTIPAKMFRRVLTIVQSHCKLGLTATL--LREDDKIADL 255
HE P ++ V +++ L + L R D+I D
Sbjct: 100 HEYVLTPHSLYAAVSVGLETSTILSVLDRLSKTRLSDEIHDF 141
>gi|414880901|tpg|DAA58032.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
Length = 702
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/286 (65%), Positives = 225/286 (78%), Gaps = 8/286 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 409 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 468
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 469 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYVMNPNKFRACEFLIRFHEQQRGDK 528
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP I+G TS +ER +IL FK +P+VNTIF+SKV D S D+
Sbjct: 529 IIVFADNLFALTTYAMKLRKPMIFGATSHAERTRILYQFKNSPEVNTIFLSKVGDNSIDI 588
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 589 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMY 648
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQV 492
YS KRQ+FLI+QGYS+KVIT L EE + Y T DEQ +LL V
Sbjct: 649 YSTKRQQFLIDQGYSFKVITSLPPAEEGPNLSYYTLDEQLELLSMV 694
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 312 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDENISRFTSDNKEKFTGM 371
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 372 AGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 411
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
E +D+ ++ LK DH SRPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 48 EVKKRDF-TKLELKVDHASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 106
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
E + P ++ V +++ + + + L
Sbjct: 107 EYNLTPHSLYAAVSVGLETSTIISVLSKL 135
>gi|347831594|emb|CCD47291.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Botryotinia fuckeliana]
Length = 845
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/351 (54%), Positives = 249/351 (70%), Gaps = 19/351 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA++FR+V + +++H KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL +
Sbjct: 481 LDEVHVVPAQIFRKVTSSIKTHSKLGLTATLLREDDKIEDLNFLIGPKLYEANWMELAAQ 540
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM+ EF+ EYL + K+ L+ MNP K++A Q+LI YHE+RGDK I
Sbjct: 541 GHIARVQCAEVWCPMTTEFHSEYLKAPSRKQGLISTMNPRKFQACQFLIDYHEKRGDKII 600
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL YA K+ K +IYG T Q+ER++IL+NF+ NP +NT+F+SK+ DTS DLPE
Sbjct: 601 VFSDNVYALHVYAQKLGKVFIYGGTVQTERLRILENFQHNPNINTLFLSKIGDTSLDLPE 660
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 661 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTKEMYYSSKRQAF 719
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG--- 511
L++QGY++K IT L G+E+ G+ ++T ++ +LLQ V+ + DEE+ ++
Sbjct: 720 LVDQGYAFKAITHLQGIEDLPGLAFNTPQDRRELLQNVMLH---NMDEEKFQEDLRDDLF 776
Query: 512 ----------VSGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFRG 552
+R+ G +A L+G D Y E S K KK +G
Sbjct: 777 HRNDGKARPKKKSNVRRTAGKLADLAGGQDMAYVEQNRSRNKD--LKKNKG 825
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + + I FTS+ K+K
Sbjct: 384 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPADIAVFTSDHKEKFTRS 443
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ T+ R+++A + M +L ++EWG+MLLD+
Sbjct: 444 TGIIVTTYSMVTQTRARAFDAQKMMDFLTSREWGLMLLDE 483
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LKPDH +RPLW+ P I LESFSP+ HA DFL IAEP RP +H
Sbjct: 96 FGNNDF-SYLSLKPDHANRPLWIDPEKARIILESFSPLAAHAQDFLTTIAEPKSRPSFLH 154
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 155 EYALTPHSLYAAV 167
>gi|154317790|ref|XP_001558214.1| hypothetical protein BC1G_02878 [Botryotinia fuckeliana B05.10]
Length = 845
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/351 (54%), Positives = 249/351 (70%), Gaps = 19/351 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA++FR+V + +++H KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL +
Sbjct: 481 LDEVHVVPAQIFRKVTSSIKTHSKLGLTATLLREDDKIEDLNFLIGPKLYEANWMELAAQ 540
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM+ EF+ EYL + K+ L+ MNP K++A Q+LI YHE+RGDK I
Sbjct: 541 GHIARVQCAEVWCPMTTEFHSEYLKAPSRKQGLISTMNPRKFQACQFLIDYHEKRGDKII 600
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL YA K+ K +IYG T Q+ER++IL+NF+ NP +NT+F+SK+ DTS DLPE
Sbjct: 601 VFSDNVYALHVYAQKLGKVFIYGGTVQTERLRILENFQHNPNINTLFLSKIGDTSLDLPE 660
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 661 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTKEMYYSSKRQAF 719
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG--- 511
L++QGY++K IT L G+E+ G+ ++T ++ +LLQ V+ + DEE+ ++
Sbjct: 720 LVDQGYAFKAITHLQGIEDLPGLAFNTPQDRRELLQNVMLH---NMDEEKFQEDLRDDLF 776
Query: 512 ----------VSGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFRG 552
+R+ G +A L+G D Y E S K KK +G
Sbjct: 777 HRNDGKARPKKKSNVRRTAGKLADLAGGQDMAYVEQNRSRNKD--LKKNKG 825
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + + I FTS+ K+K
Sbjct: 384 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPADIAVFTSDHKEKFTRS 443
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ T+ R+++A + M +L ++EWG+MLLD+
Sbjct: 444 TGIIVTTYSMVTQTRARAFDAQKMMDFLTSREWGLMLLDE 483
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LKPDH +RPLW+ P I LESFSP+ HA DFL IAEP RP +H
Sbjct: 96 FGNNDF-SYLSLKPDHANRPLWIDPEKARIILESFSPLAAHAQDFLTTIAEPKSRPSFLH 154
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 155 EYALTPHSLYAAV 167
>gi|349605790|gb|AEQ00905.1| TFIIH basal transcription factor complex helicase XPB subunit-like
protein, partial [Equus caballus]
Length = 372
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/207 (83%), Positives = 191/207 (92%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 166 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 225
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 226 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 285
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 286 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 345
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRA 421
ANVLIQISSHGGSRRQEAQRLGR+LRA
Sbjct: 346 ANVLIQISSHGGSRRQEAQRLGRVLRA 372
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 87/108 (80%)
Query: 36 PSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM 95
P SLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+
Sbjct: 68 PCGAGSLVGVTAACTVRKRCLVLGNSAVSVEQWKTQFKMWSTIDDSQICRFTSDAKDKPI 127
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GC I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 128 GCSIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 175
>gi|134107131|ref|XP_777878.1| hypothetical protein CNBA5750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260576|gb|EAL23231.1| hypothetical protein CNBA5750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 866
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/316 (59%), Positives = 234/316 (74%), Gaps = 6/316 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA MFR+ + + H KLGLTATL+REDD+I DL +LIGPKLYEANW++L K
Sbjct: 482 LDEVHVTPADMFRKCINNFKVHAKLGLTATLVREDDRIGDLGYLIGPKLYEANWMDLAKN 541
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A Q+LI YHE RGDK I
Sbjct: 542 GHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKIQACQFLINYHESRGDKVI 601
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K +I+G T + ER++IL F+ +P++NTIF+SKV DTS DLPE
Sbjct: 602 VFSDNVFALEAYAKKLGKSFIHGGTPEGERLRILSRFQHDPQLNTIFLSKVGDTSIDLPE 661
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 662 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSSKRQGF 720
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++KVIT+L G+ + ++++DEQ LL+ VL + A+ A ++G
Sbjct: 721 LIDQGYAFKVITELHGLHSMPNLVFASKDEQLSLLESVLNQGDAAAE---TADHYMRLNG 777
Query: 515 G--FKRSGGTMASLSG 528
G KR GT S SG
Sbjct: 778 GKHLKRIAGTQPSTSG 793
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ALVLC S VSV QWK QF +S + IC FT K+
Sbjct: 385 AGKTLVGITAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTS 444
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMI+ T KR+ +A++ MQ+L+++EWG +LLD+
Sbjct: 445 AGIVISTYSMIAKTGKRAHDAEKMMQFLRSREWGFLLLDE 484
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 168 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHE
Sbjct: 106 TLKGDHSLRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPALIHE 155
>gi|58259069|ref|XP_566947.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|57223084|gb|AAW41128.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 866
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 242/337 (71%), Gaps = 17/337 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA MFR+ + + H KLGLTATL+REDD+I DL +LIGPKLYEANW++L K
Sbjct: 482 LDEVHVTPADMFRKCINNFKVHAKLGLTATLVREDDRIGDLGYLIGPKLYEANWMDLAKN 541
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A Q+LI YHE RGDK I
Sbjct: 542 GHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKIQACQFLINYHESRGDKVI 601
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K +I+G T + ER++IL F+ +P++NTIF+SKV DTS DLPE
Sbjct: 602 VFSDNVFALEAYAKKLGKSFIHGGTPEGERLRILSRFQHDPQLNTIFLSKVGDTSIDLPE 661
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 662 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSSKRQGF 720
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL----AASETDADE-------- 502
LI+QGY++KVIT+L G+ + ++++DEQ LL+ VL AA+ET AD
Sbjct: 721 LIDQGYAFKVITELHGLHSMPNLVFASKDEQLSLLESVLNQGDAAAET-ADHYMRLNGGK 779
Query: 503 --ERVAGEVGGVSG-GFKRSGGTMASLSGADDAVYHE 536
+R+AG SG +R + LSG + Y E
Sbjct: 780 HLKRIAGAQPSTSGTTVQRFMAPLEHLSGGQNISYRE 816
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ALVLC S VSV QWK QF +S + IC FT K+
Sbjct: 385 AGKTLVGITAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTS 444
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMI+ T KR+ +A++ MQ+L+++EWG +LLD+
Sbjct: 445 AGIVISTYSMIAKTGKRAHDAEKMMQFLRSREWGFLLLDE 484
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 168 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHE
Sbjct: 106 TLKGDHSLRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPALIHE 155
>gi|321249760|ref|XP_003191564.1| general RNA polymerase II transcription factor [Cryptococcus gattii
WM276]
gi|317458031|gb|ADV19777.1| General RNA polymerase II transcription factor, putative
[Cryptococcus gattii WM276]
Length = 866
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 241/337 (71%), Gaps = 17/337 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA MFR+ + + H KLGLTATL+REDD+I DL +LIGPKLYEANW++L K
Sbjct: 482 LDEVHVTPADMFRKCINNFKVHAKLGLTATLVREDDRIGDLGYLIGPKLYEANWMDLAKN 541
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A Q+LI YHE RGDK I
Sbjct: 542 GHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKIQACQFLINYHESRGDKVI 601
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K +I+G T + ER++IL F+ +P++NTIF+SKV DTS DLPE
Sbjct: 602 VFSDNVFALEAYAKKLGKSFIHGGTPEGERLRILSRFQHDPQLNTIFLSKVGDTSIDLPE 661
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 662 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSSKRQGF 720
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL----AASETDADE-------- 502
LI+QGY++KVIT+L G+ + + ++DEQ LL+ VL AA+ET AD
Sbjct: 721 LIDQGYAFKVITELHGLHSMPNLVFPSKDEQLSLLESVLNQGDAAAET-ADHYMRLNGGK 779
Query: 503 --ERVAGEVGGVSGG-FKRSGGTMASLSGADDAVYHE 536
+R+AG SG +R + LSG + Y E
Sbjct: 780 HLKRIAGAQPSTSGSTVQRFMAPLEHLSGGQNISYRE 816
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ALVLC S VSV QWK QF +S + IC FT K+
Sbjct: 385 AGKTLVGITAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTS 444
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMI+ T KR+ +A++ MQ+L+++EWG +LLD+
Sbjct: 445 AGIVISTYSMIAKTGKRAHDAEKMMQFLRSREWGFLLLDE 484
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 168 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHE
Sbjct: 106 TLKGDHGLRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPSLIHE 155
>gi|303271055|ref|XP_003054889.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462863|gb|EEH60141.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/338 (56%), Positives = 246/338 (72%), Gaps = 21/338 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+ I ++HCKLGLTATL+RED+K+ LNFLIGPKLYEANWL+LQ+
Sbjct: 456 LDEVHVVPAAMFRKVIGITKAHCKLGLTATLVREDEKVEHLNFLIGPKLYEANWLDLQRD 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLV--CKTSKRLLLYVMNPNKYRATQYLIAYHER-RGD 331
G IA VQC EVWCPM+ EF+ +YL CK K+ L Y MNPNK+ A QYL+ +HE+ R D
Sbjct: 516 GHIANVQCVEVWCPMTAEFFTKYLEPECKPKKQAL-YCMNPNKFMACQYLMQFHEQQRKD 574
Query: 332 KTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFD 391
K IVFSDN+FAL+ YA + +P IYG TS +ER ++L FK + ++NTIF+SKV D S D
Sbjct: 575 KIIVFSDNIFALREYATALRRPLIYGETSHAERTRVLHAFKFSNEINTIFLSKVGDNSID 634
Query: 392 LPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAI------------AEEYNAFFYTLVS 439
+PEANV+IQISSH GSRRQEAQRLGRILR K A+ A E+NAFFY+LVS
Sbjct: 635 IPEANVIIQISSHAGSRRQEAQRLGRILRPKAAALAAMAAGKEVKVGAGEHNAFFYSLVS 694
Query: 440 QDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETD 499
+DT EM YS+KRQ+FLI QGY++KV+T L G + +HYSTR++Q +LL++VL E +
Sbjct: 695 KDTDEMYYSQKRQQFLIQQGYAFKVVTDLIGDGDRPQLHYSTREKQIELLERVLRLGEAE 754
Query: 500 ADEERVAGEV-----GGVSGGFKRSGGTMASLSGADDA 532
A EE + + GG + +R+ G+M +LSGA A
Sbjct: 755 AGEELLPADEDDIRRGGKAAAARRTQGSMLALSGAKGA 792
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 74/115 (64%), Gaps = 7/115 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGKSL G+ A VRK L LC S VSV+QW QFKLW+ D I RFTS+ K++ P+
Sbjct: 357 AGKSLTGIAAASRVRKSCLCLCTSSVSVDQWAAQFKLWTNLTDREIVRFTSQTKEEFPPV 416
Query: 96 --GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
C + VTTY+M+S KRS E+ + ++ ++ +EWGIMLLD+ VP A + V
Sbjct: 417 DQAC-VCVTTYNMVSAGGKRSEESRRVLEQMRGREWGIMLLDEVHVVPAAMFRKV 470
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
D FG D+ + +VLKPDH +RPLW+ +G IFLESFSPVY+ A+DFLI++AEPVCRP ++
Sbjct: 54 DGFGDHDF-SDLVLKPDHANRPLWICGDGRIFLESFSPVYKAAYDFLISVAEPVCRPANM 112
Query: 216 HEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
HE P ++ V +++ L + L
Sbjct: 113 HEYLLTPHSLYAAVSVGLETATILSVLGRL 142
>gi|405117967|gb|AFR92742.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 866
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 241/337 (71%), Gaps = 17/337 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA MFR+ + + H KLGLTATL+REDD+I DL +LIGPKLYEANW++L K
Sbjct: 482 LDEVHVTPADMFRKCINNFKVHAKLGLTATLVREDDRIGDLGYLIGPKLYEANWMDLAKN 541
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A Q+LI YHE RGDK I
Sbjct: 542 GHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKIQACQFLINYHESRGDKVI 601
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K +I+G T + ER++IL F+ +P++NTIF+SKV DTS DLPE
Sbjct: 602 VFSDNVFALEAYAKKLGKSFIHGGTPEGERLRILSRFQHDPQLNTIFLSKVGDTSIDLPE 661
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 662 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSSKRQGF 720
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL----AASETDADE-------- 502
LI+QGY++KVIT+L G+ + + ++DEQ LL+ VL AA+ET AD
Sbjct: 721 LIDQGYAFKVITELHGLHSMPNLVFPSKDEQLSLLESVLNQGDAAAET-ADHYMRLNGGK 779
Query: 503 --ERVAGEVGGVSG-GFKRSGGTMASLSGADDAVYHE 536
+R+AG SG +R + LSG + Y E
Sbjct: 780 HLKRIAGAQPSTSGMTVQRFMAPLEHLSGGQNISYRE 816
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ALVLC S VSV QWK QF +S + IC FT K+
Sbjct: 385 AGKTLVGITAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTS 444
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMI+ T KR+ +A++ MQ+L+++EWG +LLD+
Sbjct: 445 AGIVISTYSMIAKTGKRAHDAEKMMQFLRSREWGFLLLDE 484
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 168 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH RPLWV G+I +E+F+P + A DFL+AI+EPV RP IHE
Sbjct: 106 TLKGDHALRPLWVDDRGNIIVEAFAPFAKQAQDFLVAISEPVSRPSLIHE 155
>gi|340379126|ref|XP_003388078.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Amphimedon queenslandica]
Length = 794
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/349 (56%), Positives = 249/349 (71%), Gaps = 17/349 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV TIPA FRRVL+ VQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 445 LDEVQTIPADKFRRVLSAVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWMELQNL 504
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFY EYL KT KR LLYVMNPNK+R Q+L+ YHERR DK +
Sbjct: 505 GFIARVQCAEVWCPMTPEFYAEYLRIKTRKRKLLYVMNPNKFRICQFLMRYHERRNDKIM 564
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
+FSD VF L+ YA+K+++P+I G T Q ER++IL+NF+ NP+VNTIF+SKV D SFDLP+
Sbjct: 565 IFSDMVFPLRTYAMKLDRPFIDGQTPQKERMKILKNFRHNPQVNTIFISKVGDNSFDLPD 624
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAI----AEEYNA---FFYTLVSQDTMEMSY 447
ANVLIQ+S+HGGSRRQEAQRLGRILRAKKG I A + +A T +
Sbjct: 625 ANVLIQVSAHGGSRRQEAQRLGRILRAKKGTIYVLAASDSDADEEVLPTSGGGQGKGHGF 684
Query: 448 SRKRQRFLINQGYSYKVI-----TKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADE 502
RK G + +I T L +E R + +D+ L+++VLAAS++DADE
Sbjct: 685 ERKAGSMATMSGGNDMIIDLKPTTILRPYQEGRCLVMEEQDQ--DLMKKVLAASDSDADE 742
Query: 503 ERV--AGEVGGVSGGFKRSGGTMASLSGADDAVYHE-SRFSNVKHPLFK 548
E + +G G GF+R G+MA++SG +D +Y E S + +HPLF+
Sbjct: 743 EVLPTSGGGQGKGHGFERKAGSMATMSGGNDMMYMEYSARARPQHPLFR 791
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 85/108 (78%), Gaps = 1/108 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
AGK+LVGVTA CTVRKR +VLC S V+VEQW QFKLWS D S++CRFTS+AKDKP
Sbjct: 348 AGKTLVGVTAACTVRKRCMVLCTSAVAVEQWWSQFKLWSNIDMSVVCRFTSDAKDKPSPN 407
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I ++TYSM+S+TQKR+W++ Q M +LQN+EWG+M+LD+ + A K
Sbjct: 408 TSIAISTYSMVSYTQKRAWDSQQVMDFLQNREWGLMILDEVQTIPADK 455
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 138 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 197
VP +A N+ AA P DE+GAKDY + LK DH +RPLWVAP+GHIFLESFSPVYRH
Sbjct: 35 VPNSASANISTSGAA-PCDEYGAKDYSVLLTLKLDHSTRPLWVAPDGHIFLESFSPVYRH 93
Query: 198 AHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
A DFLIAIAEPVCRPEHIHE ++ V +Q+
Sbjct: 94 ARDFLIAIAEPVCRPEHIHEFQLTSYSLYAAVSVGLQTE 132
>gi|224058459|ref|XP_002299520.1| predicted protein [Populus trichocarpa]
gi|222846778|gb|EEE84325.1| predicted protein [Populus trichocarpa]
Length = 803
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/351 (54%), Positives = 248/351 (70%), Gaps = 29/351 (8%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 422 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 481
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYH-ERRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +H E+R DK
Sbjct: 482 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEEQRRDK 541
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K++KP IYG TS +ER +IL FK + +VNT+F+SKV D S D+
Sbjct: 542 IIVFADNLFALTEYAMKLHKPMIYGATSHAERTKILHAFKTSSEVNTVFLSKVGDNSIDI 601
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDT---- 442
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT
Sbjct: 602 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQMID 661
Query: 443 ----------------MEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQG 486
+EM YS KRQ+FLI+QGYS+KVIT L + + Y++ D+Q
Sbjct: 662 ADSSWRSISYLRCFFFLEMYYSTKRQQFLIDQGYSFKVITSLPPADSGADLSYNSLDDQL 721
Query: 487 QLLQQVLAASETDADEERVAGEVGGVS-GGFKRSGGTMASLSGADDAVYHE 536
LL +VL+A + E++ + ++ +R G+M+ +SGA+ VY E
Sbjct: 722 GLLAKVLSAGDDAVGLEQLDEDADDIALHKARRYMGSMSVMSGANGMVYME 772
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QF LWS ICRFTS++K++ G
Sbjct: 325 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFSLWSDISQDQICRFTSDSKERFKGN 384
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 385 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 424
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 63/96 (65%), Gaps = 9/96 (9%)
Query: 143 KKNVEKDDAAVPE---DEF------GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSP 193
+ +V +DDA PE D+F G K +++ LKPDH +RPLW +G IFLE+FS
Sbjct: 23 RSSVAEDDAFYPEEAGDDFRDGETEGKKRDFSKLELKPDHANRPLWACADGRIFLETFSS 82
Query: 194 VYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
+Y+ A+DFLIAIAEPVCRPE +HE + P ++ V
Sbjct: 83 LYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV 118
>gi|299115227|emb|CBN74062.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 884
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/347 (53%), Positives = 242/347 (69%), Gaps = 15/347 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+VL++ +HCKLGLTATL+REDD I+DLNFLIGPKLYEANW++L +
Sbjct: 534 LDEVHVVPARMFRKVLSVCNAHCKLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTQS 593
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRL--LLYVMNPNKYRATQYLIAYHERRGDK 332
G++A VQC E WCPM+ EFY EYL + R LLY+MNPNK+R +YL+ H R DK
Sbjct: 594 GYLANVQCVEAWCPMTAEFYSEYLKPGVTARQKQLLYIMNPNKFRTCEYLVRTHMERNDK 653
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
I+F DNVF+LK +A + P+IYG T +SER +IL F++NP VN I +SKV DTS D+
Sbjct: 654 VIIFGDNVFSLKKFATILQIPFIYGATPESERSRILGTFRVNPLVNCIGLSKVGDTSIDI 713
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
PEANV+IQISSH GSRRQEAQRLGRILR K + +NAFFYTLVS DT EM YS KRQ
Sbjct: 714 PEANVIIQISSHFGSRRQEAQRLGRILRPKSN-VDGGFNAFFYTLVSTDTSEMYYSSKRQ 772
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAA--SETDADEERV----- 505
++L++QGY++KV+T LA + R + ++LQ+ L A + + DE+++
Sbjct: 773 QYLVDQGYTFKVVTDLANASDRSQSKLPDRKSELRVLQETLMAKTDQEEKDEKKMLDRDM 832
Query: 506 --AGEVGGVSGGFKRSGGTMASLSGADDAVY--HESRFSNVKHPLFK 548
GE G G R G + +LSGAD + Y ++SR KHPLFK
Sbjct: 833 DDIGE-GSARGTVMRRKGNLGALSGADGSRYMEYDSRPPPKKHPLFK 878
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+L GVTA T++K LVLC SGVSV QWK+QF+LW+ + I FTS+ K+
Sbjct: 437 AGKTLTGVTAASTIKKSCLVLCTSGVSVLQWKYQFQLWTDIAEKDISCFTSDIKEAINEE 496
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G+L+TTYSMIS +RS A + + + +EWG MLLD+ V A+
Sbjct: 497 AGVLITTYSMISFAGQRSEIAKKIIDTITKREWGFMLLDEVHVVPAR 543
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHT 220
KD R M LKP H RP+WV P+GHI+LE+ SP Y A+DFL+AIAEPV RPE +HE
Sbjct: 117 KDCR-DMQLKPQHTDRPIWVLPDGHIYLEASSPYYHQAYDFLVAIAEPVSRPEFVHEYKL 175
Query: 221 IPAKMFRRVLTIVQS 235
P ++ V + +
Sbjct: 176 TPYSLYAAVAVSIDT 190
>gi|424513709|emb|CCO66331.1| predicted protein [Bathycoccus prasinos]
Length = 962
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/346 (53%), Positives = 239/346 (69%), Gaps = 24/346 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+ I ++HCKLGLTATL+REDDK+ LNFLIGPKLYEANWL+LQ+
Sbjct: 566 LDEVHVVPAAMFRKVIGITKAHCKLGLTATLVREDDKVEHLNFLIGPKLYEANWLDLQRD 625
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHER-RGDK 332
G IA VQC EVWC M+PEF+ +YL K S K+ +LY MNPNK+ A QYL+ YHE R DK
Sbjct: 626 GHIANVQCVEVWCEMTPEFFAKYLDPKFSMKKQVLYCMNPNKFMACQYLMTYHENFRKDK 685
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSDN+FAL+ YA + +P IYG TS +ER ++L FK + ++NTIF+SKV D S D+
Sbjct: 686 VIVFSDNIFALREYATALKRPLIYGDTSHAERTRVLHAFKYSNEINTIFLSKVGDNSIDI 745
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAI-----AEEYNAFFYTLVSQDTMEMSY 447
PEANV+IQISSH GSRRQEAQRLGRILR K + ++++NAFFY+LVS+DT EM +
Sbjct: 746 PEANVIIQISSHAGSRRQEAQRLGRILRPKAATVGKKNDSDDHNAFFYSLVSRDTSEMYF 805
Query: 448 SRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAG 507
S KRQ+FLI QGY++K++ L G ++ + YST+ Q LL + L A E +A EE +
Sbjct: 806 STKRQQFLIQQGYAFKIVPDLIGENDKVQLMYSTKATQLDLLAKTLNAGEAEAGEEVLDV 865
Query: 508 EVGGVSGGFKRS-----------------GGTMASLSGADDAVYHE 536
+ + G + GG++A LSGA Y E
Sbjct: 866 DEDDLEGNLMKQKKAKLSALAAARRTRTVGGSLAKLSGAQGLTYQE 911
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
FG D+ + + LK DH +RPLWV +G IFLESFSP+Y+ A+DFLIA+AEPVCRPEHIHE
Sbjct: 168 FGENDF-SDLSLKVDHPNRPLWVCSDGRIFLESFSPLYKAAYDFLIAVAEPVCRPEHIHE 226
Query: 218 VHTIPAKMFRRV 229
P ++ V
Sbjct: 227 YVLTPHSLYAAV 238
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGKSL G+ A V K L LC S VSV+QW QFKLW+ D I RFTS+ K+ P
Sbjct: 467 AGKSLTGIAAAVRVGKSCLCLCTSSVSVDQWAGQFKLWTNLTDREIVRFTSQNKETFPPN 526
Query: 96 GCG-ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
C + VTTY+MIS KRS +++ + ++ +EWG MLLD+ VP A + V
Sbjct: 527 NCPCVCVTTYNMISAGGKRSEASEKILNAIRGREWGTMLLDEVHVVPAAMFRKV 580
>gi|300707502|ref|XP_002995956.1| hypothetical protein NCER_101030 [Nosema ceranae BRL01]
gi|263505385|sp|C4V922.1|RAD25_NOSCE RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|239605203|gb|EEQ82285.1| hypothetical protein NCER_101030 [Nosema ceranae BRL01]
Length = 659
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/329 (55%), Positives = 241/329 (73%), Gaps = 10/329 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 329 LDEVHVVPAMMFRKVISLVTHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 388
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V+C EVWC M+ EFY+EYL+ + K+ LL +MNP K++A +YLI+ HE +GDK I
Sbjct: 389 GHIAKVECFEVWCGMTGEFYKEYLIQTSRKKRLLSIMNPTKFQACEYLISRHEAKGDKII 448
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 449 VFSDSVAALKSYALKLGKPFIYGPTGQTERMRILKQFQTNPLINTIFLSKVGDTSIDLPE 508
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ FFY+LVS+DT EM YS KRQ+F
Sbjct: 509 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVFFYSLVSKDTDEMFYSSKRQQF 567
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS--ETDADEERVAGEVGGV 512
L++QGYS+ +IT++ + + Y ++ +Q +LL VL +S E ++D E E+G
Sbjct: 568 LVDQGYSFNIITEIPEIYKNENRVYKSKSQQKELLVSVLLSSDKELESDTEADNEEIGVY 627
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSN 541
SG K S +G D Y E+ N
Sbjct: 628 SGILKGS-------TGVDGMAYMETNERN 649
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 7/103 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSE----AKDK 93
+GK+LVG+TA T++K L+LC S VSVEQW+ Q L++ ICRFTSE KDK
Sbjct: 232 SGKTLVGITALTTIKKSCLILCTSAVSVEQWRQQTMLFTNISGDNICRFTSEYKEWYKDK 291
Query: 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
CGI++TTY+M+++ KRS EA + M +Q+ EWG++LLD+
Sbjct: 292 ---CGIIITTYTMLAYNGKRSPEAQKIMDLIQSTEWGLLLLDE 331
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
+++LK DH++ LW+ + I LE+F + A DFLIAIAEPV RP++IHE +
Sbjct: 19 EIILKDDHENFSLWINYDALIILETFKQNSKQASDFLIAIAEPVSRPKYIHEYQITAYSL 78
Query: 226 FRRV 229
+ V
Sbjct: 79 YAAV 82
>gi|302928024|ref|XP_003054618.1| hypothetical protein NECHADRAFT_90467 [Nectria haematococca mpVI
77-13-4]
gi|256735559|gb|EEU48905.1| hypothetical protein NECHADRAFT_90467 [Nectria haematococca mpVI
77-13-4]
Length = 807
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/310 (59%), Positives = 230/310 (74%), Gaps = 4/310 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V++ ++SH KLGLTATLLREDDKI+ LNFLIGPKLYEANW+EL ++
Sbjct: 476 LDEVHVVPANIFRQVISSIKSHSKLGLTATLLREDDKISHLNFLIGPKLYEANWMELSQQ 535
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM EFY YL + L +NP K++A QYLI YHE RGDK I
Sbjct: 536 GHIAKVQCAEVWCPMPVEFYETYLKVSIRMKRTLGAVNPFKFQACQYLINYHESRGDKII 595
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD++++LK YAVK+ K +IYG TSQ ER+ IL+NF+ NP +NT+F+SK+ DTS DLPE
Sbjct: 596 VFSDDLYSLKLYAVKLGKAFIYGETSQEERMMILENFQRNPLINTLFLSKIGDTSLDLPE 655
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFYTLVS+DT EM YS KRQ F
Sbjct: 656 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYTLVSKDTQEMFYSSKRQAF 714
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGY++KVIT+L GM + +S E+ +LL++ L +E EE GE + G
Sbjct: 715 LVDQGYAFKVITQLDGMHSLPDLAFSKASERQELLKRTLIDNEKAISEE---GETDYLFG 771
Query: 515 GFKRSGGTMA 524
K GT A
Sbjct: 772 EGKSKSGTAA 781
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S VS QW+++F WS + + I FT+E+K G
Sbjct: 379 AGKTLVGITAACTIKKSVIVLCTSSVSAVQWRNEFLKWSNINPASITTFTAESKTIFRGR 438
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++++++RS E+ + M +L +EWG+MLLD+
Sbjct: 439 AGIIVTTYSMVTNSRERSRESKEVMNFLAGREWGLMLLDE 478
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +D+ + + LKPDHK+RP+W+ P G I +E FSP+ R A DFLI IAEP RP +H
Sbjct: 94 FGERDF-SYLTLKPDHKNRPMWIDPEKGVIIMEKFSPMARPATDFLITIAEPRSRPAFLH 152
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 153 EYIMTPHSLYAAV 165
>gi|406700028|gb|EKD03215.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 8904]
Length = 874
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/279 (62%), Positives = 224/279 (80%), Gaps = 1/279 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA +FR+ ++ + H KLGLTATL+REDDKI DL++LIGPKLYEANW++L K
Sbjct: 472 LDEVHVAPAALFRKCVSSFKVHTKLGLTATLVREDDKIGDLSYLIGPKLYEANWMDLAKN 531
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A Q+LI YHE RGDK I
Sbjct: 532 GHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKMQACQFLIKYHEDRGDKII 591
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDN++AL+ YA ++ KP+I+G T + ER++IL F+ NPK+NTIF+S V DTS DLPE
Sbjct: 592 VFSDNIYALEAYATRLGKPFIHGGTPEGERLRILSWFQHNPKLNTIFLSSVGDTSIDLPE 651
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQ+SSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 652 ATCLIQVSSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQGF 710
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL 493
LI+QGY++KVIT+L G+++ G+ ++ +++Q LL+++L
Sbjct: 711 LIDQGYAFKVITELHGIDKMDGLLFANKNDQIGLLEEIL 749
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK ALVLC S VSV QWK QF +S + IC FT K+ G
Sbjct: 375 AGKTLVGITAACTIRKSALVLCTSAVSVAQWKQQFLQFSNISERQICAFTQGEKEIFQGP 434
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMI+ T KR+ +A++ M WL+++EWG +LLD+
Sbjct: 435 SGIVISTYSMIAKTGKRAHDAEKVMNWLRSREWGFLLLDE 474
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH +RPLW+ G+I LE+F+ + A DFL+AIAEPV RP IHE
Sbjct: 95 LKADHANRPLWIDEGGNIILEAFAHLAPQAQDFLVAIAEPVSRPSLIHE 143
>gi|401883704|gb|EJT47899.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 2479]
Length = 874
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/279 (62%), Positives = 224/279 (80%), Gaps = 1/279 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA +FR+ ++ + H KLGLTATL+REDDKI DL++LIGPKLYEANW++L K
Sbjct: 472 LDEVHVAPAALFRKCVSSFKVHTKLGLTATLVREDDKIGDLSYLIGPKLYEANWMDLAKN 531
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A Q+LI YHE RGDK I
Sbjct: 532 GHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKMQACQFLIKYHEDRGDKII 591
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDN++AL+ YA ++ KP+I+G T + ER++IL F+ NPK+NTIF+S V DTS DLPE
Sbjct: 592 VFSDNIYALEAYATRLGKPFIHGGTPEGERLRILSWFQHNPKLNTIFLSSVGDTSIDLPE 651
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQ+SSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 652 ATCLIQVSSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQGF 710
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL 493
LI+QGY++KVIT+L G+++ G+ ++ +++Q LL+++L
Sbjct: 711 LIDQGYAFKVITELHGIDKMDGLLFANKNDQIGLLEEIL 749
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK ALVLC S VSV QWK QF +S + IC FT K+ G
Sbjct: 375 AGKTLVGITAACTIRKSALVLCTSAVSVAQWKQQFLQFSNISERQICAFTQGEKEIFQGP 434
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMI+ T KR+ +A++ M WL+++EWG +LLD+
Sbjct: 435 SGIVISTYSMIAKTGKRAHDAEKVMNWLRSREWGFLLLDE 474
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LK DH +RPLW+ G+I LE+F+ + A DFL+AIAEPV RP IHE
Sbjct: 95 LKADHANRPLWIDEGGNIILEAFAHLAPQAQDFLVAIAEPVSRPSLIHE 143
>gi|336383510|gb|EGO24659.1| hypothetical protein SERLADRAFT_438280 [Serpula lacrymans var.
lacrymans S7.9]
Length = 845
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/336 (56%), Positives = 235/336 (69%), Gaps = 38/336 (11%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T +++H KLGLTATL+REDDKIADLN++IGPKLYEANW++L +
Sbjct: 493 LDEVHVVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIADLNYMIGPKLYEANWMDLAAK 552
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL ++ KR+LLY MNP K++A Q+LI +HE RGDK I
Sbjct: 553 GHIANVQCAEVWCPMTPEFYREYLREQSRKRMLLYCMNPKKFQACQFLIKFHEDRGDKII 612
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ KPYI+G T Q V DTS DLPE
Sbjct: 613 VFSDNVFALEAYAKKLGKPYIHGGTGQ-----------------------VGDTSIDLPE 649
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ+F
Sbjct: 650 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMFYSTKRQQF 708
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD--------EERVA 506
LI+QGY++KVIT L G+E + Y T+DEQ +L+ VL A+E++AD E +A
Sbjct: 709 LIDQGYAFKVITHLDGLENLPDLVYRTKDEQIELISSVLLANESEADLGSDIRATEGDLA 768
Query: 507 GEVGGVS------GGFKRSGGTMASLSGADDAVYHE 536
G V G +R+ GT+ +LSGA Y E
Sbjct: 769 GTVTSKDFGQMKFPGAQRTTGTLTALSGAQHMSYVE 804
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF WS D I FT+E+K++ G
Sbjct: 396 AGKTLVGITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTAESKERFAGE 455
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GI+V+TYSM+++T RS E+ + M++L ++EWG +LLD+ VP A + V
Sbjct: 456 SGIVVSTYSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRV 507
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 169 LKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFR 227
LKPDH SRP+W++P +GHI LE+FSP+ A DFL+AI+EPV RP IHE ++
Sbjct: 104 LKPDHASRPIWISPEDGHIILEAFSPIAEQAQDFLVAISEPVSRPAFIHEYKLTSYSLYA 163
Query: 228 RVLTIVQS 235
V +Q+
Sbjct: 164 AVSVGLQT 171
>gi|348671252|gb|EGZ11073.1| hypothetical protein PHYSODRAFT_563851 [Phytophthora sojae]
Length = 818
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 246/349 (70%), Gaps = 18/349 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PAKMFR+V+ + HCKLGLTATL+REDD I DLNFLIGPKLYEANW++L +
Sbjct: 469 LDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQS 528
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS--KRLLLYVMNPNKYRATQYLIAYHERRGDK 332
GF+A V C EVWCPM+ EFYREYL S KR LLYV NPNK+ A ++LI YHE RGDK
Sbjct: 529 GFLANVSCVEVWCPMTGEFYREYLRETKSARKRALLYVANPNKFTAAEFLIQYHEERGDK 588
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
++FSD+VFAL+ YA K+NK YIYG T + ER+++LQ+F+ +P VN I +SKV DTS DL
Sbjct: 589 ILLFSDDVFALRLYATKLNKGYIYGGTGERERMRLLQSFRSSPLVNVICISKVGDTSIDL 648
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
PEANV+IQ+SSH GSRRQEAQRLGRILR K A +NAFFYTL+S DT EM YS KRQ
Sbjct: 649 PEANVIIQVSSHFGSRRQEAQRLGRILRPKANATG-GFNAFFYTLISTDTHEMFYSNKRQ 707
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA----------DE 502
++L++QGY++KV+T L +G+ ++ +++Q LL +VL+A A DE
Sbjct: 708 QYLVDQGYTFKVVTDLFEPGSFQGV-FTRKEDQRALLNEVLSADVESAAKDENAAIRDDE 766
Query: 503 ERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVKHPLFK 548
+ E+ G G K+ ++ +LSGAD Y E + +H LF+
Sbjct: 767 DLSRLELSG-HGRKKKKLASLGALSGADGTKYMEYSAGHGAKQRHNLFR 814
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--KPM 95
AGK+L GVTA T++K L LC S VSVEQW QFK+W+ + I RFTS AKD P
Sbjct: 372 AGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTNIPEKKIARFTSVAKDYIDP- 430
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++VTTY+M++ +R+ +++ MQ +Q +EWG +LLD+ V AK
Sbjct: 431 DSGVIVTTYTMVAFGGRRARASEEVMQLIQGREWGCILLDEVHVVPAK 478
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
D G D+ + + +KPDH++RP+WV PNG IFLE+FSP+Y+ A+DFL+AI+EPV RPE +
Sbjct: 77 DASGYYDF-STLDMKPDHEARPVWVCPNGRIFLEAFSPIYKQAYDFLVAISEPVSRPEFL 135
Query: 216 HEVHTIPAKMFRRVLTIVQSHCKL 239
HE P ++ V +++ L
Sbjct: 136 HEYKLTPYSLYAAVSVAIETESIL 159
>gi|392576784|gb|EIW69914.1| hypothetical protein TREMEDRAFT_68365 [Tremella mesenterica DSM
1558]
Length = 867
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/279 (62%), Positives = 220/279 (78%), Gaps = 1/279 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+ L + H KLGLTATL+REDDK+ DL +L+GPKLYEANW++L K
Sbjct: 478 LDEVHVVPAEMFRKCLNNFKVHAKLGLTATLVREDDKVKDLGYLVGPKLYEANWMDLAKN 537
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A Q+LI YHE RGDK I
Sbjct: 538 GHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKIQACQFLINYHESRGDKNI 597
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ K +I+G T + ER++IL F+ +P +NTIF+SKV DTS DLPE
Sbjct: 598 VFSDNVYALEAYAKKLGKSFIHGGTPEGERLRILARFQHDPNLNTIFLSKVGDTSIDLPE 657
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS DT EM YS KRQ F
Sbjct: 658 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSTDTQEMYYSSKRQGF 716
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL 493
LI+QGY++KVIT+L G+++ + + T+ +Q LL++VL
Sbjct: 717 LIDQGYAFKVITELHGLDQLPNLVFPTKQQQISLLEEVL 755
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K LVLC S VSV QWK QF +S + I FT K+ G
Sbjct: 381 AGKTLVGITAACTIKKSTLVLCTSAVSVAQWKQQFIHFSNISERQISTFTQGEKEMFAGP 440
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+++TYSMI+ T KR+ +A++ MQ+L+++EWG +LLD+
Sbjct: 441 AGIVISTYSMIAKTGKRAHDAEKMMQFLRSREWGFLLLDE 480
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
+ G D+ Q LK DH +RPLWV G+I LE+F+P+ + A DFLIAI+EPV RP I
Sbjct: 85 NTLGGADFSNQD-LKKDHAARPLWVDEYGNIILEAFAPLAQAAQDFLIAISEPVSRPVLI 143
Query: 216 HE 217
HE
Sbjct: 144 HE 145
>gi|342877523|gb|EGU78974.1| hypothetical protein FOXB_10508 [Fusarium oxysporum Fo5176]
Length = 756
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/337 (55%), Positives = 241/337 (71%), Gaps = 9/337 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ +++H KLGLTATLLREDDKI LNFLIGPKLYEANW+EL ++
Sbjct: 395 LDEVHVVPANMFRRVISSIKTHSKLGLTATLLREDDKIDHLNFLIGPKLYEANWMELSQQ 454
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWC M FY +YL + + L +NP+K++A Q+LI YHE RGDK I
Sbjct: 455 GHIAKVQCAEVWCSMPTVFYEQYLQVSSRMKRTLAAINPSKFQACQFLINYHEARGDKII 514
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD +++LK YA K+ + IYG TSQ ER+++L +F+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 515 VFSDELYSLKLYAYKLKRYLIYGGTSQEERLRVLDHFRHNPEVNTLFLSKIGDTSLDLPE 574
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISS GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM ++ KRQ F
Sbjct: 575 ATCLIQISSQFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTSEMHFASKRQAF 633
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV--GGV 512
LI+QGY++KVIT+L G+E+ + + T EQ +LLQ L +ET D+E A ++ G
Sbjct: 634 LIDQGYAFKVITRLVGIEKTPDLAFRTAAEQQELLQGALVDNETAVDDEFAADDLWGGER 693
Query: 513 SGGFKRS------GGTMASLSGADDAVYHESRFSNVK 543
SGG R G + LSG D Y E S+ K
Sbjct: 694 SGGKGRKNTVRHVAGYLDQLSGVHDMAYIERNTSSNK 730
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK +VLC+S VS QW+++F WS + I FTS++K++ G
Sbjct: 298 AGKTLVGITAACTIRKGVIVLCSSSVSAVQWRNEFLKWSNINPEDITTFTSDSKEEFSGS 357
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTYSM++++++R+ ++ + M +L +EWG+MLLD+
Sbjct: 358 TGVIVTTYSMVTNSRERAHDSKKMMDFLAGREWGLMLLDE 397
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 171 PDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
PD +RPLW+ P+ G+I LE F P+ A DFL+ IAEP RP +HE
Sbjct: 29 PDSDNRPLWIDPDKGYIILERFHPLADLATDFLVTIAEPQSRPAFLHE 76
>gi|401825205|ref|XP_003886698.1| Rad25-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
gi|337263116|gb|AEI69269.1| DNA repair helicase Rad25 [Encephalitozoon hellem]
gi|395459843|gb|AFM97717.1| Rad25-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
Length = 672
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/324 (57%), Positives = 236/324 (72%), Gaps = 6/324 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVL++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 334 LDEVHVVPAMMFRRVLSLVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 393
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V C EVWC M+ +FYREYL T +R LL +MNP K++ +YLI HE RGDK I
Sbjct: 394 GHIAKVSCVEVWCGMTGDFYREYLSQPTRRRRLLSIMNPTKFQVCEYLINKHESRGDKII 453
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V+ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 454 VFSDSVYALKAYALKLGKPFIYGPTGQTERMRILKQFQTNPVINTIFLSKVGDTSIDLPE 513
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ +FY+LVS+DT EM YS KRQ+F
Sbjct: 514 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVYFYSLVSKDTDEMFYSNKRQQF 572
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++ ++T + + E Y T+ +Q +LL VL ASE + + E +
Sbjct: 573 LIDQGYTFTILTDIPEVHENEHCVYRTKGQQRELLAGVLLASEKELESEESDN-----AE 627
Query: 515 GFKRSGGTMASLSGADDAVYHESR 538
G S + SLSGAD+ Y E +
Sbjct: 628 GIVYSTAKLKSLSGADEMAYIERK 651
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
+GK++VG+TA T++K LVLC S VSVEQW+ Q + ++ + RFTS+ K+ P
Sbjct: 237 SGKTIVGITAISTIKKSCLVLCTSAVSVEQWRQQTQQFTNISPDNVGRFTSDHKEWPKDD 296
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
CGI+VTTY+M+++T KRS+EA + M ++ EWG+++LD+
Sbjct: 297 CGIVVTTYTMLAYTGKRSYEAQKIMDLIRKTEWGLLVLDE 336
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++VLK + +S P+WV +G I LE+F R A DFLIAIAEP+ RP IHE +
Sbjct: 19 ELVLKENSESYPMWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLKIHEFQITAYSL 78
Query: 226 FRRV 229
+ V
Sbjct: 79 YAAV 82
>gi|301094774|ref|XP_002896491.1| TFIIH basal transcription factor complex helicase XPB subunit
[Phytophthora infestans T30-4]
gi|262109466|gb|EEY67518.1| TFIIH basal transcription factor complex helicase XPB subunit
[Phytophthora infestans T30-4]
Length = 820
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 246/349 (70%), Gaps = 18/349 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PAKMFR+V+ + HCKLGLTATL+REDD I DLNFLIGPKLYEANW++L +
Sbjct: 471 LDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQS 530
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS--KRLLLYVMNPNKYRATQYLIAYHERRGDK 332
GF+A V C EVWCPM+ EFYREYL S KR LLYV NPNK+ A ++LI YHE RGDK
Sbjct: 531 GFLANVSCVEVWCPMAGEFYREYLREAKSARKRALLYVANPNKFTAAEFLIQYHEERGDK 590
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
++FSD+VFAL+ YA K+NK YIYG T + ER+++LQ+F+ +P VN I +SKV DTS DL
Sbjct: 591 ILLFSDDVFALRLYATKLNKGYIYGGTGERERMRLLQSFRSSPLVNVICISKVGDTSIDL 650
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
PEANV+IQ+SSH GSRRQEAQRLGRILR K A +NAFFYTL+S DT EM YS KRQ
Sbjct: 651 PEANVIIQVSSHFGSRRQEAQRLGRILRPKANATG-GFNAFFYTLISTDTHEMFYSNKRQ 709
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDA----------DE 502
++L++QGY++KV+T L +G+ ++ +++Q LL +VL+A A DE
Sbjct: 710 QYLVDQGYTFKVVTDLFEPGSFQGV-FTRKEDQRALLNEVLSADVESAAKDENAAIRDDE 768
Query: 503 ERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVKHPLFK 548
+ E+ G G K+ ++ +LSGAD Y E + +H LF+
Sbjct: 769 DLSRLELSG-HGRKKKKLSSLGALSGADGTKYMEYSAGHGAKQRHNLFR 816
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--KPM 95
AGK+L GVTA T++K L LC S VSVEQW QFK+W+ + I RFTS AKD P
Sbjct: 374 AGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTSQFKMWTNIPEKKIARFTSVAKDYINP- 432
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++VTTY+M++ +R+ +++ MQ +Q +EWG +LLD+ V AK
Sbjct: 433 DSGVIVTTYTMVAFGGRRARASEEVMQLIQGREWGCILLDEVHVVPAK 480
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
+KPDH++RP+WV PNG IFLE+FSP+Y+ A+DFL+AI+EPV RPE +HE P ++
Sbjct: 89 MKPDHEARPVWVCPNGRIFLEAFSPIYKQAYDFLVAISEPVSRPEFLHEYKLTPYSLYAA 148
Query: 229 VLTIVQSHCKL 239
V +++ L
Sbjct: 149 VSVAIETESIL 159
>gi|429962851|gb|ELA42395.1| DNA repair helicase rad25 [Vittaforma corneae ATCC 50505]
Length = 659
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/324 (55%), Positives = 235/324 (72%), Gaps = 6/324 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+ ++ + HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 332 LDEVHVVPAQMFRKTVSAIPHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSVQ 391
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V+ AEVWC M+ EFYREYL+ + KR +L +MNP K + +YLI HE+RGDK I
Sbjct: 392 GHIAKVEGAEVWCNMTAEFYREYLIQSSRKRRILSIMNPTKIQICEYLIEKHEKRGDKII 451
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V AL YA KM KP+IYGPTSQ+ER++IL+ F+ NP++NTIF+SKV DTS DLPE
Sbjct: 452 VFSDSVLALMEYAKKMGKPFIYGPTSQTERMRILKQFQTNPQINTIFLSKVGDTSIDLPE 511
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGR+LRAKK + +FY+LVS+DT EM YS KRQ+F
Sbjct: 512 ATCLIQISSHFGSRRQEAQRLGRVLRAKKRN-DPNFRVYFYSLVSKDTEEMVYSAKRQQF 570
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+ +IT++ + Y T+ +Q +LL +L ASE D E ++ +
Sbjct: 571 LVDQGYSFNIITEMPEVMNRENRLYKTKSQQKELLAIILMASEEDLTSEELSEDEMA--- 627
Query: 515 GFKRSGGTMASLSGADDAVYHESR 538
+ G M+ LSGA+ Y E +
Sbjct: 628 --DYNIGKMSVLSGAEGMAYVERK 649
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA T++K ALVLC S VSVEQW+ ++T + I RFTS+ K+ G
Sbjct: 235 AGKTLVGITAISTIKKSALVLCTSAVSVEQWRQSTLNFTTIAANKIARFTSDRKEWFEGN 294
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVP 154
G+L+TTYSM++++ KRS+EA + M +Q+ EWG+M+LD+ V V + K +A+P
Sbjct: 295 VGVLITTYSMMAYSGKRSYEAQKLMNLIQSHEWGLMILDE-VHVVPAQMFRKTVSAIP 351
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++V+K + P+WV + I LE F P + A DFLIAI+EPV RP +HE +
Sbjct: 19 ELVMKENCDELPIWVNYDALIVLEVFRPTSKIAIDFLIAISEPVSRPAKMHEYQITAYSL 78
Query: 226 F 226
+
Sbjct: 79 Y 79
>gi|392513052|emb|CAD24977.2| DNA REPAIR HELICASE RAD25 [Encephalitozoon cuniculi GB-M1]
Length = 672
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 235/324 (72%), Gaps = 6/324 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVL++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 334 LDEVHVVPAMMFRRVLSLVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 393
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARV C EVWC M+ +FYREYL T +R LL +MNP K++ +YLI HE RGDK I
Sbjct: 394 GHIARVSCIEVWCGMTGDFYREYLSQPTRRRRLLSIMNPTKFQVCEYLINKHESRGDKII 453
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V+ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 454 VFSDSVYALKAYALKLGKPFIYGPTGQTERMRILKQFQTNPVINTIFLSKVGDTSIDLPE 513
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ +FY+LVS+DT EM YS KRQ+F
Sbjct: 514 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVYFYSLVSKDTDEMFYSSKRQQF 572
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++ ++T + + E Y T+ +Q +LL VL ASE + + E G V
Sbjct: 573 LIDQGYTFTILTDIPEVHENEHCVYKTKGQQRELLAGVLLASEKELESEESEDSEGIVYS 632
Query: 515 GFKRSGGTMASLSGADDAVYHESR 538
K + SLSG D+ Y E +
Sbjct: 633 TTK-----LKSLSGGDEMAYIERK 651
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
+GK++VG+TA T++K LVLC S VSVEQWK Q ++ + RFTS+ K+ P
Sbjct: 237 SGKTIVGITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDD 296
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI++TTY+M+++T KRS EA + M ++ EWG+++LD+
Sbjct: 297 SGIVITTYTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDE 336
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++VLK D +S P+WV +G I LE+F R A DFLIAIAEP+ RP IHE +
Sbjct: 19 ELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIAEPMSRPLQIHEFQITAYSL 78
Query: 226 FRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
+ V +GLT + + E NFL
Sbjct: 79 YAAV--------SVGLTTSDIIETLDRFSKNFL 103
>gi|337263086|gb|AEI69254.1| DNA repair helicase [Encephalitozoon romaleae]
gi|396080809|gb|AFN82430.1| DNA repair helicase Rad25 [Encephalitozoon romaleae SJ-2008]
Length = 672
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 243/337 (72%), Gaps = 7/337 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVL++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 334 LDEVHVVPAMMFRRVLSLVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 393
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V C EVWC M+ +FYREYL T +R LL +MNP K++ +YLI HE RGDK I
Sbjct: 394 GHIAKVSCVEVWCGMTGDFYREYLSQPTRRRRLLSIMNPTKFQVCEYLINKHESRGDKII 453
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V+ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 454 VFSDSVYALKAYALKLGKPFIYGPTGQTERMRILKQFQTNPVINTIFLSKVGDTSIDLPE 513
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ +FY+LVS+DT EM YS KRQ+F
Sbjct: 514 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFRVYFYSLVSKDTDEMFYSSKRQQF 572
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++ ++T + + E Y T+ +Q +LL VL ASE + + E E G V
Sbjct: 573 LIDQGYTFTILTDIPEVHENEHCVYKTKGQQRELLAGVLLASEKELESEESGSEEGVVYN 632
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
K + +LSGAD+ Y E R + +H L K R
Sbjct: 633 TAK-----LKNLSGADEMAYIE-RKAPQRHTLTKNGR 663
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
+GK++VG+TA T++K LVLC S VSVEQW+ Q + ++ + RFTS+ K+ P
Sbjct: 237 SGKTIVGITAISTIKKSCLVLCTSAVSVEQWRQQTQQFTNISPDNVGRFTSDHKEWPRDD 296
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
CGI+VTTY+M+++T KRS+EA + M ++ EWG+++LD+
Sbjct: 297 CGIVVTTYTMLAYTGKRSYEAQKIMDLIRKTEWGLLVLDE 336
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 149 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 208
++ A+P+ + ++VLK + P+WV +G I LE+F R A DFLIAIAEP
Sbjct: 2 NELAIPKKATKHQFPYEEVVLKEKSERYPMWVNYDGLIILETFRESSRQASDFLIAIAEP 61
Query: 209 VCRPEHIHEVHTIPAKMFRRV 229
+ RP +HE ++ V
Sbjct: 62 MSRPLRVHEFQITAYSLYAAV 82
>gi|85691085|ref|XP_965942.1| DNA repair helicase [Encephalitozoon cuniculi GB-M1]
gi|74697619|sp|Q8SSK1.1|RAD25_ENCCU RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
Length = 696
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 235/324 (72%), Gaps = 6/324 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVL++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 358 LDEVHVVPAMMFRRVLSLVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 417
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARV C EVWC M+ +FYREYL T +R LL +MNP K++ +YLI HE RGDK I
Sbjct: 418 GHIARVSCIEVWCGMTGDFYREYLSQPTRRRRLLSIMNPTKFQVCEYLINKHESRGDKII 477
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V+ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 478 VFSDSVYALKAYALKLGKPFIYGPTGQTERMRILKQFQTNPVINTIFLSKVGDTSIDLPE 537
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ +FY+LVS+DT EM YS KRQ+F
Sbjct: 538 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVYFYSLVSKDTDEMFYSSKRQQF 596
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++ ++T + + E Y T+ +Q +LL VL ASE + + E G V
Sbjct: 597 LIDQGYTFTILTDIPEVHENEHCVYKTKGQQRELLAGVLLASEKELESEESEDSEGIVYS 656
Query: 515 GFKRSGGTMASLSGADDAVYHESR 538
K + SLSG D+ Y E +
Sbjct: 657 TTK-----LKSLSGGDEMAYIERK 675
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
+GK++VG+TA T++K LVLC S VSVEQWK Q ++ + RFTS+ K+ P
Sbjct: 261 SGKTIVGITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDD 320
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI++TTY+M+++T KRS EA + M ++ EWG+++LD+
Sbjct: 321 SGIVITTYTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDE 360
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIA 206
E ++ +P+ + ++VLK D +S P+WV +G I LE+F R A DFLIAIA
Sbjct: 24 EMNEVVIPKKATKHQFPYEELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIA 83
Query: 207 EPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
EP+ RP IHE ++ V +GLT + + E NFL
Sbjct: 84 EPMSRPLQIHEFQITAYSLYAAV--------SVGLTTSDIIETLDRFSKNFL 127
>gi|449329742|gb|AGE96011.1| DNA repair helicase rad25 [Encephalitozoon cuniculi]
Length = 696
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 235/324 (72%), Gaps = 6/324 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVL++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 358 LDEVHVVPAMMFRRVLSLVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 417
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARV C EVWC M+ +FYREYL T +R LL +MNP K++ +YLI HE RGDK I
Sbjct: 418 GHIARVSCIEVWCGMTGDFYREYLSQPTRRRRLLSIMNPTKFQVCEYLINKHESRGDKII 477
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V+ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 478 VFSDSVYALKAYALKLGKPFIYGPTGQTERMRILKQFQTNPVINTIFLSKVGDTSIDLPE 537
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ +FY+LVS+DT EM YS KRQ+F
Sbjct: 538 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVYFYSLVSKDTDEMFYSSKRQQF 596
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++ ++T + + E Y T+ +Q +LL VL ASE + + E G V
Sbjct: 597 LIDQGYTFTILTDIPEVHENEHCVYKTKGQQRELLAGVLLASEKELESEESEDSEGIVYS 656
Query: 515 GFKRSGGTMASLSGADDAVYHESR 538
K + SLSG D+ Y E +
Sbjct: 657 TTK-----LKSLSGGDEMAYIERK 675
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
+GK++VG+TA T++K LVLC S VSVEQWK Q ++ + RFTS+ K+ P
Sbjct: 261 SGKTIVGITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDD 320
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI++TTY+M+++T KRS EA + M ++ EWG+++LD+
Sbjct: 321 SGIVITTYTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDE 360
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIA 206
E ++ +P+ + ++VLK D +S P+WV +G I LE+F R A DFLIAIA
Sbjct: 24 EMNEVVIPKKATKHQFPYEELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIA 83
Query: 207 EPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
EP+ RP IHE ++ V +GLT + + E NFL
Sbjct: 84 EPMSRPLQIHEFQITAYSLYAAV--------SVGLTTSDIIETLDRFSKNFL 127
>gi|367055690|ref|XP_003658223.1| hypothetical protein THITE_2156915 [Thielavia terrestris NRRL 8126]
gi|347005489|gb|AEO71887.1| hypothetical protein THITE_2156915 [Thielavia terrestris NRRL 8126]
Length = 828
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 242/345 (70%), Gaps = 23/345 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA+ FR V+ V++H KLGLTATLLREDD++ DLNFLIGPKLYEA+WLEL ++
Sbjct: 447 LDEVHVAPAQTFRTVVGCVKAHAKLGLTATLLREDDRVDDLNFLIGPKLYEASWLELSQQ 506
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWCPM EFY +YL R L MNP K++A QYLI YHE RGDK I
Sbjct: 507 GHIARVQCAEVWCPMPSEFYEQYLRAGARSRPLFCAMNPTKFQACQYLIRYHESRGDKII 566
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA K+ KP++YG TS +ER ++L F+ +P +T+F+SK+ DTS DLPE
Sbjct: 567 VFSDNVYALEVYAKKLMKPFLYGGTSNAERQEVLDYFRNSPDCSTLFLSKIGDTSLDLPE 626
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A VLIQIS+ GSRRQEAQRLGR+LRAK+ E +NAFFY+LVS+DT+EM YS KRQ F
Sbjct: 627 ATVLIQISAQYGSRRQEAQRLGRVLRAKRRN-EEGFNAFFYSLVSKDTVEMVYSAKRQVF 685
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETD---ADEE-------- 503
L++QGY+++VIT+L +E+ G+ Y+T + +LL+QVLA +E+ A+EE
Sbjct: 686 LVDQGYAFRVITQLKNIEDMPGLAYATPQARRELLRQVLAEAESSSWRAEEEKEAAGLLA 745
Query: 504 ----------RVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESR 538
R A GG G +G +++SG D YH+ +
Sbjct: 746 DGNMFYSREGRPAARQGGSKAG-PTAGRISSAVSGGRDMTYHDQK 789
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+ A CT++K +VL ++ QW+ +F W+ D + I F S K G
Sbjct: 350 AGKTLVGIAAACTIKKGVVVLATGSIAAVQWRDEFLKWTNVDPASIALFVSGEKSPFAGS 409
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L+TTY+M+++T+ R+ E+ + ++ L +EWG+M+LD+
Sbjct: 410 TGVLITTYAMVTNTRARAGESARMIELLTTREWGLMVLDE 449
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 160 AKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE-- 217
++D+ A + L+P ++RP+W+A +G + LE+F P+ HA D L+AIAEP+ RP +HE
Sbjct: 79 SRDFTA-LALEPGQQTRPVWIAGSGSLILEAFHPLAAHARDLLVAIAEPMSRPALVHEYR 137
Query: 218 --VHTI 221
VH++
Sbjct: 138 LTVHSL 143
>gi|169806188|ref|XP_001827839.1| DNA repair helicase [Enterocytozoon bieneusi H348]
gi|263505381|sp|A9CRJ7.1|RAD25_ENTBH RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|161779287|gb|EDQ31310.1| DNA repair helicase [Enterocytozoon bieneusi H348]
Length = 609
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 178/289 (61%), Positives = 222/289 (76%), Gaps = 5/289 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+V++ V CKLGLTATL+REDDKI DLNFLIGPKLYEANW +L +
Sbjct: 321 LDEVHVVPAQMFRKVVSSVLHQCKLGLTATLVREDDKIEDLNFLIGPKLYEANWQDLSDK 380
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V+C+EVWC M+ EFYREYL+ TSK+ LL +MNP K + +YLI HE +GDK I
Sbjct: 381 GHIAKVECSEVWCEMTAEFYREYLIQDTSKKRLLSIMNPVKIQMCEYLIQKHEAQGDKII 440
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+VFALK YA+KM KP+IYGPTSQ+ER++IL+ F++N K+NT+F+SKV DTS DLPE
Sbjct: 441 VFSDSVFALKEYAIKMKKPFIYGPTSQTERMKILKQFQINSKINTLFLSKVGDTSIDLPE 500
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGR+LRAKK + A+FY+LVS+DT EM YS KRQ+F
Sbjct: 501 ATCLIQISSHFGSRRQEAQRLGRVLRAKKRN-NPNFKAYFYSLVSKDTEEMHYSAKRQQF 559
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQV----LAASETD 499
LI+QGYS+K I M Y T+ EQ +LL + L++ ETD
Sbjct: 560 LIDQGYSFKTIIGFNDMYYNETRLYKTKQEQKELLFNLLSKNLSSDETD 608
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK------ 91
+GK+LVG+TA T++K A++LC S VSVEQWK L++T + + RFTS+ K
Sbjct: 217 SGKTLVGITAISTIKKSAIILCTSAVSVEQWKQSILLFTTINPYSVSRFTSDCKEWFENY 276
Query: 92 --DKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ GIL+TTYSM+S + KRS++ + + + WGIM+LD+ V A+
Sbjct: 277 NVENTSQGGILITTYSMLSFSGKRSYDVQRIINKIFAYNWGIMILDEVHVVPAQ 330
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
+K + + PLW+ +G I LE F + A +FLIAIAEP+ RPE+IHE P +F
Sbjct: 1 MKENSEDCPLWINYDGLIILEMFRENSQQATNFLIAIAEPISRPENIHEYQITPYSLF 58
>gi|387594649|gb|EIJ89673.1| DNA repair helicase rad25 [Nematocida parisii ERTm3]
Length = 653
Score = 367 bits (942), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 173/296 (58%), Positives = 218/296 (73%), Gaps = 1/296 (0%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA MFRRV++ + SHCKLGLTATL+RED+KI DLNFLIGPKLYEA+WL L +G
Sbjct: 336 EVHVVPANMFRRVVSTIISHCKLGLTATLVREDEKIEDLNFLIGPKLYEADWLNLSAQGH 395
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
I++V C EVWC M+ EFY++YLV K+ +L MNP K + +Y+I+ HE GDK IVF
Sbjct: 396 ISKVCCTEVWCKMTGEFYKQYLVADIRKKRILATMNPTKIQMCEYIISKHEALGDKIIVF 455
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDNVF LK YA+K KP+IYGPT Q+ER+ IL F+ NPK+NTIF+SKV DTS DLPEA
Sbjct: 456 SDNVFTLKAYALKFGKPFIYGPTGQAERMHILNQFRTNPKINTIFLSKVGDTSIDLPEAT 515
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
LIQIS H GSRRQE QRLGRILRAK+ E + A+FYTLVS DT E+ YS +R++FLI
Sbjct: 516 CLIQISGHFGSRRQETQRLGRILRAKRRT-DEGFTAYFYTLVSMDTEEVPYSTRRRQFLI 574
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV 512
+QGYS+K++ ++ MEE Y T+ EQ +LL +L AS+ D E E+ +
Sbjct: 575 DQGYSFKIVEEIKEMEENPPTVYRTKTEQNELLASILLASDRDIQTESEDDEIDRI 630
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+ A CT+++ L+LC + VSVEQWK Q K ++ D I TS+ K+K G
Sbjct: 237 AGKTLVGIVALCTMKRSCLILCTTSVSVEQWKQQIKHFTNVKDEAIAILTSDTKEKFSGQ 296
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TY+M+S++ KRS+E + M +L N EWG+++ D+
Sbjct: 297 AGIVVSTYTMVSYSGKRSYETQKIMDFLTNTEWGLIIFDE 336
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
++LK +H +RP+WV+ +G I LE S + A DFLIAIAEPV RP ++HE
Sbjct: 16 HIILKENHHTRPMWVSADGIIILEMHSEQSQQAQDFLIAIAEPVTRPSNMHE 67
>gi|387596504|gb|EIJ94125.1| DNA repair helicase rad25, partial [Nematocida parisii ERTm1]
Length = 653
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 173/296 (58%), Positives = 217/296 (73%), Gaps = 1/296 (0%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA MFRRV++ + SHCKLGLTATL+RED+KI DLNFLIGPKLYEA+WL L +G
Sbjct: 336 EVHVVPANMFRRVVSTIISHCKLGLTATLVREDEKIEDLNFLIGPKLYEADWLNLSAQGH 395
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
I++V C EVWC M+ EFY++YLV K+ +L MNP K + +Y+I HE GDK IVF
Sbjct: 396 ISKVCCTEVWCKMTGEFYKQYLVADIRKKRILATMNPTKIQMCEYIINKHEALGDKIIVF 455
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDNVF LK YA+K KP+IYGPT Q+ER+ IL F+ NPK+NTIF+SKV DTS DLPEA
Sbjct: 456 SDNVFTLKAYALKFGKPFIYGPTGQAERMHILNQFRTNPKINTIFLSKVGDTSIDLPEAT 515
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
LIQIS H GSRRQE QRLGRILRAK+ E + A+FYTLVS DT E+ YS +R++FLI
Sbjct: 516 CLIQISGHFGSRRQETQRLGRILRAKRRT-DEGFTAYFYTLVSMDTEEVPYSTRRRQFLI 574
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV 512
+QGYS+K++ ++ MEE Y T+ EQ +LL +L AS+ D E E+ +
Sbjct: 575 DQGYSFKIVEEIKEMEENPPTVYRTKTEQNELLASILLASDRDIQTESEDDEIDRI 630
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+ A CT+++ L+LC + VSVEQWK Q K ++ D I TS+ K+K G
Sbjct: 237 AGKTLVGIVALCTMKRSCLILCTTSVSVEQWKQQIKHFTNVKDEAIAILTSDTKEKFSGQ 296
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TY+M+S++ KRS+E + M +L N EWG+++ D+
Sbjct: 297 AGIVVSTYTMVSYSGKRSYETQKIMDFLTNTEWGLIIFDE 336
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
++LK +H +RP+WV+ +G I LE S + A DFLIAIAEPV RP ++HE
Sbjct: 16 HIILKENHHTRPMWVSADGIIILEMHSEQSQQAQDFLIAIAEPVTRPSNMHE 67
>gi|303388169|ref|XP_003072319.1| DNA repair helicase Rad25 [Encephalitozoon intestinalis ATCC 50506]
gi|303301458|gb|ADM10959.1| DNA repair helicase Rad25 [Encephalitozoon intestinalis ATCC 50506]
Length = 672
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 185/324 (57%), Positives = 234/324 (72%), Gaps = 6/324 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVL++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 334 LDEVHVVPAMMFRRVLSLVGHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 393
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARV C EVWC M+ +FYREYL T +R LL +MNP K++ +YLI HE RGDK I
Sbjct: 394 GHIARVSCVEVWCRMTGDFYREYLSQPTRRRRLLSIMNPTKFQMCEYLINKHESRGDKII 453
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V+ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 454 VFSDSVYALKAYALKLGKPFIYGPTGQTERMRILKQFQTNPVINTIFLSKVGDTSIDLPE 513
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ +FY+LVS+DT EM YS KRQ+F
Sbjct: 514 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVYFYSLVSKDTDEMFYSNKRQQF 572
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++ ++T + E Y T+ +Q +LL VL ASE + + E E G +
Sbjct: 573 LIDQGYTFTILTDIPEAHENEHCVYRTKGQQRELLAGVLLASEKELESEESGDEEGTI-- 630
Query: 515 GFKRSGGTMASLSGADDAVYHESR 538
S + S SG D+ Y E +
Sbjct: 631 ---YSTARLKSFSGGDEMAYIEKK 651
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
+GK++VG+TA T++K LVLC S VSVEQWK Q ++ + RFTS+ K+ P
Sbjct: 237 SGKTIVGITAISTIKKSCLVLCTSAVSVEQWKQQTLQFTNISPENVGRFTSDHKEWPKDD 296
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
CGI+VTTY+M+++T KRS+EA + M ++ EWG+++LD+
Sbjct: 297 CGIVVTTYTMLAYTGKRSYEAQKIMDLIRKTEWGLLVLDE 336
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++VLK D+ P+WV +G I LE F R A DFLIAIAEPV RP IHE +
Sbjct: 19 ELVLKEDNDGFPMWVNYDGLIILEMFRESSRQACDFLIAIAEPVSRPLKIHEFQITAYSL 78
Query: 226 FRRV 229
+ V
Sbjct: 79 YAAV 82
>gi|346978860|gb|EGY22312.1| DNA repair helicase RAD25 [Verticillium dahliae VdLs.17]
Length = 792
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 185/330 (56%), Positives = 230/330 (69%), Gaps = 35/330 (10%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPKLYEANW+EL ++
Sbjct: 464 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSQQ 523
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARVQCAEVWC M EFY EYL KR LLY+MNP K++A QYLI YHE RGDK I
Sbjct: 524 GHIARVQCAEVWCSMPTEFYDEYLKAPPRKRSLLYIMNPAKFQACQYLINYHESRGDKII 583
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+ K +IYG T Q+ER+Q+L+NF+ NP+VNT+F+SK+ DTS DLPE
Sbjct: 584 VFSDNVYALKAYAMKLKKVFIYGETGQAERLQVLENFQHNPQVNTLFLSKIGDTSLDLPE 643
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM +S KRQ F
Sbjct: 644 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTSEMFFSSKRQAF 702
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV--GGV 512
L++Q E+ +LL++VL E +EE ++ G
Sbjct: 703 LVDQA------------------------ERRELLEKVLV--ENVGNEEEFVDDLFHSGT 736
Query: 513 SG------GFKRSGGTMASLSGADDAVYHE 536
G G +R+ G + LSG D Y E
Sbjct: 737 MGRKPKKKGARRTAGMLGDLSGGQDMAYIE 766
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CTV+K +VLC S +SV QW+++F WS I FTS+ K +
Sbjct: 366 AGKTLVGITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIAAFTSDNKGQTFTG 425
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ T++RS EA + M +LQ++EWG+MLLD+
Sbjct: 426 STGIIVTTYSMVTQTRERSHEAKKMMDFLQHREWGLMLLDE 466
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWV-APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +DY + + LKPD ++RPLW+ A IFLESFSP+ + DFLI IAEP+ RP +H
Sbjct: 80 FGKRDY-SYLNLKPDFQNRPLWIDASKARIFLESFSPLAQQCQDFLITIAEPISRPSFVH 138
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 139 EYALSPHSLYAAV 151
>gi|449016491|dbj|BAM79893.1| DNA repair helicase rad25 [Cyanidioschyzon merolae strain 10D]
Length = 967
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 164/258 (63%), Positives = 208/258 (80%), Gaps = 1/258 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VL IV++H KLGLTATL+RED I D+NFLIGPKLYEANWL+LQ++
Sbjct: 595 LDEVHVVPANMFRKVLGIVKAHSKLGLTATLVREDLLITDINFLIGPKLYEANWLDLQRQ 654
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G++A VQCAEVWCPM+ EFYREYL ++KR LLY MNP KYR ++L+ +HE RGDK I
Sbjct: 655 GYLATVQCAEVWCPMTAEFYREYLQRGSAKRRLLYAMNPTKYRTCEFLMKFHEARGDKVI 714
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
+FSDN+FAL++YA + +P+IYGPTSQ+ER++IL F+ NP NTI +SKV DTS DLPE
Sbjct: 715 IFSDNIFALRYYATLLRRPFIYGPTSQTERMRILTQFQRNPVCNTIMLSKVGDTSIDLPE 774
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANV+IQIS GSRRQEAQRLGRILR K + +NAF+Y+LVS DT E+ ++ KRQ+F
Sbjct: 775 ANVIIQISGQYGSRRQEAQRLGRILRPKPRP-DQNFNAFYYSLVSTDTSEVYFAAKRQQF 833
Query: 455 LINQGYSYKVITKLAGME 472
LI+QGY++KVI + ME
Sbjct: 834 LIDQGYAFKVIAHIPEME 851
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTACCT++K L+LC S VSVEQW+HQ LWST D+ I RFT+E + +G
Sbjct: 500 AGKTLVGVTACCTIKKTCLILCTSAVSVEQWRHQLLLWSTIDEQRITRFTAEQRPNVLG- 558
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I +TTY+M++ +RS E+++ +Q ++ +EWG+M+LD+
Sbjct: 559 DITITTYTMVAFGGRRSSESERLLQQIREREWGLMILDE 597
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 47/68 (69%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTI 221
DY + LKPDH RP+WV PNG IFLE+FSP+YR A DFL+A+AEP RPE IHE
Sbjct: 141 DYARALHLKPDHVQRPIWVLPNGRIFLEAFSPLYRQASDFLVAVAEPYSRPEWIHEYLLT 200
Query: 222 PAKMFRRV 229
P ++ V
Sbjct: 201 PYSLYAAV 208
>gi|255071253|ref|XP_002507708.1| predicted protein [Micromonas sp. RCC299]
gi|226522983|gb|ACO68966.1| predicted protein [Micromonas sp. RCC299]
Length = 809
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 180/333 (54%), Positives = 236/333 (70%), Gaps = 18/333 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+ I ++HCKLGLTATL+RED+K+ LNFLIGPKLYEANWL+LQ+
Sbjct: 458 LDEVHVVPAAMFRKVIGITKAHCKLGLTATLVREDEKVEHLNFLIGPKLYEANWLDLQRD 517
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK-TSKRLLLYVMNPNKYRATQYLIAYHER-RGDK 332
G IA VQC EVWCPM+ EFY++YL +KR +LY MNPNK+ QYL+ +HE+ R DK
Sbjct: 518 GHIANVQCVEVWCPMTAEFYKKYLSNDLAAKRQILYCMNPNKFMTCQYLMQFHEKQRKDK 577
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
I+FSDN+FAL+ YA + +P IYG TS +ER ++L FK + +VNTIF+SKV D S D+
Sbjct: 578 IIIFSDNIFALREYATVLRRPLIYGETSHAERTRVLHAFKFSDEVNTIFLSKVGDNSIDI 637
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK----GAIAE------EYNAFFYTLVSQDT 442
PEANV+IQISSHGGSRRQEAQRLGRILR K+ +I E E+NAFFY+LVS DT
Sbjct: 638 PEANVIIQISSHGGSRRQEAQRLGRILRPKRIAAQASILEGAAGVGEHNAFFYSLVSTDT 697
Query: 443 MEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADE 502
EM +S KRQ+FL+ QGY++KV+ + E + + TR++Q LL++VL E A +
Sbjct: 698 EEMYFSTKRQQFLVQQGYAFKVVANIFDESVEHQLLFHTREDQMALLERVLRLDEVAAVD 757
Query: 503 ERVA------GEVGGVSGGFKRSGGTMASLSGA 529
E + + VS KR ++ +LSGA
Sbjct: 758 EALVEDDDDITRIDIVSDTVKRREESILALSGA 790
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 7/115 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----K 93
AGKSL G+ A +RK + LC S VSV+QW QFKLW+ + I RFTS+ K+ +
Sbjct: 359 AGKSLTGIAAASRIRKSCICLCTSSVSVDQWAAQFKLWTNLSELEIVRFTSQVKESFPPQ 418
Query: 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
C + +TTY+M+S KRS ++ + + L+ +EWG+MLLD+ VP A + V
Sbjct: 419 NQAC-VCITTYNMVSVGGKRSEDSQRALAELRGREWGLMLLDEVHVVPAAMFRKV 472
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LK DH +RPLW+ +G IFLESFS VY+ A+DFLI++AEPVCRP ++HE P ++
Sbjct: 101 LKEDHANRPLWICSDGRIFLESFSGVYKPAYDFLISVAEPVCRPANVHEYVLTPQSLYAA 160
Query: 229 V 229
V
Sbjct: 161 V 161
>gi|291000979|ref|XP_002683056.1| predicted protein [Naegleria gruberi]
gi|284096685|gb|EFC50312.1| predicted protein [Naegleria gruberi]
Length = 729
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 240/355 (67%), Gaps = 28/355 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR V + V+SHCKLGLTATLLRED+K DL FLIGPKLYEANWL+LQ++
Sbjct: 375 LDEVHVVPANMFRHVAS-VKSHCKLGLTATLLREDNKTDDLYFLIGPKLYEANWLDLQQK 433
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G +A VQC EVWCPM+ EF+ EYL K+ LLYVMNPNK+RA ++LI YHE++GDK I
Sbjct: 434 GHLANVQCVEVWCPMTAEFFAEYLTANAKKKTLLYVMNPNKFRACEFLIRYHEKQGDKII 493
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ PYI+G T Q ER+ L F+ NTIF+SKV DT+ D+PE
Sbjct: 494 VFSDNVFALQEYAEKLGVPYIFGNTKQQERVYYLNQFRNTNHYNTIFISKVGDTAIDIPE 553
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V+IQISSH GSRRQEAQRLGRILR K G + + A+FYTLVSQDT EM +S KRQ+F
Sbjct: 554 ATVIIQISSHFGSRRQEAQRLGRILRPKGGGLKNQ-QAYFYTLVSQDTQEMFFSTKRQQF 612
Query: 455 LINQGYSYKVITKLAGM----EEERGM---HYSTRDEQGQLLQQVLAASETDADEERVAG 507
LINQGYS++V+ + E G+ H +T+ E+ +L V A + EE++
Sbjct: 613 LINQGYSFRVLPDIQKYYRQGANEMGLTLKHMNTKKEELDMLAIVKKAEDARGQEEKI-- 670
Query: 508 EVGGVSGGFKRSGGTMASLSGADDAVYHE--------------SRFSNVKHPLFK 548
V ++S ++AS+SG ++ YH ++ + HPLFK
Sbjct: 671 ---NVDDEVEKSSSSLASISGGNEIYYHSYEASTTTSRRRGKATKVPSTVHPLFK 722
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 LLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG----HIFL 188
+L+D AKK EK + + + + + + LKPDHK RP+WV HIF+
Sbjct: 42 ILNDLDNEVAKKAQEKLVSDIFSQKKDVQFDHSNLELKPDHKLRPVWVCSGTDGKFHIFM 101
Query: 189 ESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
E+FSP+Y+ A+DFL+A+AEPV RPE++HE
Sbjct: 102 ETFSPIYQQAYDFLVAVAEPVSRPENLHE 130
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
Query: 67 QWKHQFKLWSTADDSMICRFTSEAKDK-PMGCGIL--VTTYSMISHTQKRSWEADQTMQW 123
+WK+QFKLWST D++ + FTS+ KD P L +TTY+MI+HT+KRS EA + M +
Sbjct: 305 EWKNQFKLWSTIDENRVVVFTSQEKDALPKDDDPLIIITTYTMITHTRKRSGEAKEVMDY 364
Query: 124 LQNQEWGIMLLDD 136
+Q++EWG+++LD+
Sbjct: 365 IQSREWGLLILDE 377
>gi|440492855|gb|ELQ75388.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Trachipleistophora hominis]
Length = 666
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 183/335 (54%), Positives = 231/335 (68%), Gaps = 11/335 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+VL +V HCKLGLTATLLREDDKI DLNFLIGPKLYEA+W L +
Sbjct: 340 LDEVHVVPAQMFRKVLGLVSHHCKLGLTATLLREDDKIEDLNFLIGPKLYEADWQYLSMQ 399
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA V C EVWC M+ FY YL KR ++ +MNP K++ TQYLI HE+RGDK I
Sbjct: 400 GHIATVSCFEVWCSMTNHFYAAYLRQNMRKRRVIAIMNPTKFQTTQYLINMHEKRGDKII 459
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV ALK YA+K+ KPYIYGPT Q ER++IL+ F+ NP +NT+F+SKV DTS DLPE
Sbjct: 460 VFSDNVHALKSYALKLGKPYIYGPTGQQERMKILKQFQTNPMINTLFLSKVGDTSIDLPE 519
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ + +FY+LVS+DT EM YS KRQ++
Sbjct: 520 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPGFKVYFYSLVSKDTDEMYYSTKRQQY 578
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++KV + M+ + T++EQ +LL +L ASE + + E V
Sbjct: 579 LIDQGYTFKVFDDMK-MDNFDNRVFKTKEEQKELLASILLASENELESEDAEETVV---- 633
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKK 549
S ++ S+S ++ Y E + V LF K
Sbjct: 634 ----SQKSLRSVSNVENVAYVEKK-KKVTKDLFAK 663
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
+GK+LVG+TA CT+++ LVLC S VSVEQWK Q K +++ D I FTSE KD +
Sbjct: 246 SGKTLVGITAICTIKRPTLVLCTSAVSVEQWKAQIKQFTSVKDEDIACFTSERKD--VCD 303
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
++++TY+M+ + KRS+EA + + +++N EWG+++LD+ V A+
Sbjct: 304 AVIISTYTMLCFSGKRSYEAQKAIDYIKNTEWGLLILDEVHVVPAQ 349
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
++VLK +H P WV +G I LE+FSP+++ A DFLIAI+EP+ RP+HIHE
Sbjct: 19 RIVLKENHSDYPFWVNYDGIIILETFSPLFKAATDFLIAISEPISRPKHIHE 70
>gi|429964053|gb|ELA46051.1| DNA repair helicase rad25 [Vavraia culicis 'floridensis']
Length = 667
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/295 (59%), Positives = 218/295 (73%), Gaps = 2/295 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+VL +V HCKLGLTATLLREDDKI DLNFLIGPKLYEA+W L +
Sbjct: 341 LDEVHVVPAQMFRKVLGLVSHHCKLGLTATLLREDDKIEDLNFLIGPKLYEADWQYLSMQ 400
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA V C EVWC M+ FY YL T KR ++ +MNP K++ TQYLI HE+RGDK I
Sbjct: 401 GHIATVSCFEVWCSMTNHFYSAYLRQNTRKRRVIAIMNPIKFQTTQYLINMHEKRGDKII 460
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV ALK YA+K+ KPYIYGPT Q ER++IL+ F+ NP +NT+F+SKV DTS DLPE
Sbjct: 461 VFSDNVHALKSYALKLGKPYIYGPTGQQERMKILKQFQTNPMINTLFLSKVGDTSIDLPE 520
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ + +FY+LVS+DT EM YS KRQ++
Sbjct: 521 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPGFKVYFYSLVSKDTDEMYYSTKRQQY 579
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV 509
LI+QGY++KV + M+ + T++EQ +LL +L ASE + + E V V
Sbjct: 580 LIDQGYTFKVFDDMK-MDNFDNRVFKTKEEQKELLASILLASEKELESEDVEETV 633
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
+GK+LVG+TA CT++K LVLC S VSVEQWK Q K ++ D I FTSE KD +
Sbjct: 247 SGKTLVGITAICTIKKPTLVLCTSAVSVEQWKAQIKQFTNVKDDDIACFTSERKD--VCD 304
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
++V+TY+M+ + KRS+EA + M ++N EWG+++LD+ V A+
Sbjct: 305 SVIVSTYTMLCFSGKRSYEAQKAMDHIKNTEWGLLILDEVHVVPAQ 350
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
++VLK +H P WV +G I LE+FSP+++ A DFLIAI+EP+ RP+HIHE
Sbjct: 19 RIVLKDNHLDYPFWVNYDGIIILETFSPLFKAATDFLIAISEPISRPKHIHE 70
>gi|219119406|ref|XP_002180464.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407937|gb|EEC47872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 720
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 185/356 (51%), Positives = 243/356 (68%), Gaps = 22/356 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PAKMFRRV+ V++HC+LGLTATL+REDD I+DLNFLIGPKLYEANW++L +
Sbjct: 362 MDEVHVVPAKMFRRVVGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTAQ 421
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G++A VQC EVWCPM+ F +EYL+ S+ + LLYVMNP+K RA +L+ +HE RGDK
Sbjct: 422 GYLANVQCVEVWCPMTGPFMKEYLMASNSRLKQLLYVMNPSKLRAVDFLVRFHEARGDKI 481
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSD V++LK YA + KP IYG T + ER IL F+ + V TI +SKV DTS DLP
Sbjct: 482 IVFSDLVYSLKLYAEMLKKPLIYGETPERERQAILGTFRASDAVRTICISKVGDTSIDLP 541
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKK-----GAIAEEYNAFFYTLVSQDTMEMSYS 448
EANV+IQ+SSH GSRRQEAQRLGRILR K G+ +NAFFYTLVS DT EM YS
Sbjct: 542 EANVIIQVSSHFGSRRQEAQRLGRILRPKSYTQQDGSNRSTFNAFFYTLVSSDTQEMFYS 601
Query: 449 RKRQRFLINQGYSYKVITKLAGMEE----ERGMHYSTRDEQGQLLQQVLAASETDADEER 504
KRQ++LI+QGY++K++T L + G ++T ++ +LL+ VL SETD ++E+
Sbjct: 602 AKRQQYLIDQGYTFKIVTNLCEKADAEAIANGCTFATPEDDRKLLRTVL-TSETDLEKEQ 660
Query: 505 VAGEV---------GGVSGGFKRSGGTMASLSGADDAVYHESRFSNV--KHPLFKK 549
A + ++ + +MA LSG Y E S + +HPLF+K
Sbjct: 661 RAEDTAIRKNNTDGAALADAASKKTTSMAQLSGGTGLRYKEFSSSGLPKRHPLFRK 716
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 75/106 (70%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L GVTA T++K + LC + VSV QWK+QF+LW++ D I FTS+ KDK +
Sbjct: 266 AGKTLTGVTAAQTIKKSVVCLCTNAVSVLQWKYQFQLWTSIPDEHIAVFTSDHKDKLVDP 325
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+LVTTY+MIS++ KRS ++ + M + ++EWG++L+D+ V AK
Sbjct: 326 CVLVTTYTMISYSGKRSAQSQEIMDQITSREWGLLLMDEVHVVPAK 371
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ 234
SRP W P+G+I+LE+F +Y A+DFL+AIAEPV RPE +H+ P ++ V T ++
Sbjct: 2 SRPCWTCPDGNIYLEAFHDLYVSAYDFLVAIAEPVARPEFLHQYKLTPYSLYAAVATNIE 61
Query: 235 SH 236
++
Sbjct: 62 TN 63
>gi|403352874|gb|EJY75962.1| Transcription factor IIH subunit [Oxytricha trifallax]
gi|403372236|gb|EJY86011.1| Transcription factor IIH subunit [Oxytricha trifallax]
Length = 593
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/295 (60%), Positives = 219/295 (74%), Gaps = 11/295 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV +PA+MFR+VL I +SHCKLGLTATL+RED+KI DLNFLIGPKLYEANWL+LQ++
Sbjct: 261 LDEVQVVPAEMFRKVLAICKSHCKLGLTATLVREDNKIQDLNFLIGPKLYEANWLDLQEQ 320
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRL--LLYVMNPNKYRATQYLIAYHERRGDK 332
GF+ARVQC EVWC M+ EFYREYL R+ +LYV NPNK+ A QYLI HE RGDK
Sbjct: 321 GFLARVQCIEVWCEMTTEFYREYLNHNLKPRMKQVLYVNNPNKFLACQYLINLHESRGDK 380
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSDN+FALK YA K+ KPYI G SQSER+ IL F+ ++NTIF+SKV DTS DL
Sbjct: 381 IIVFSDNLFALKMYAKKLKKPYISGDVSQSERMGILHYFQKTNEINTIFLSKVGDTSIDL 440
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGA------IAEEYNAFFYTLVSQDTMEMS 446
P ANV+IQISSH SRRQEAQRLGRILR K+ A +EE+NA+FY+LVS +T EM
Sbjct: 441 PGANVIIQISSHFASRRQEAQRLGRILRPKQSAEKQAYSNSEEFNAYFYSLVSTNTQEMY 500
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEE---RGMHYSTRDEQGQLLQQVLAASET 498
Y+ KRQ+FLI+QGY ++VI +L ++ + + +T EQ L +L ET
Sbjct: 501 YADKRQQFLIDQGYYFEVIQELPFQKDPLQLQKLQMTTIREQVDFLTSILQNDET 555
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 10/114 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+L G+ A CT +K ++LC S VSV+QW+ QF WS +CRFTS KD PM
Sbjct: 159 AGKTLAGIIAACTAKKSTMILCTSDVSVQQWRQQFYQWSNIAGK-VCRFTSRTKD-PMFE 216
Query: 96 ------GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GI++++Y+MI++ RS + + M ++N +WG+++LD+ V A+
Sbjct: 217 SKGPDSEAGIVISSYNMIAYQGSRSGQTQKIMDTIRNTDWGLLILDEVQVVPAE 270
>gi|393228723|gb|EJD36361.1| TFIIH basal transcription factor complex helicase XPB subunit
[Auricularia delicata TFB-10046 SS5]
Length = 684
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 173/287 (60%), Positives = 219/287 (76%), Gaps = 1/287 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA FR V +++H KLGLTATL+REDDKI DL+ LIGPKLYEANW +L +
Sbjct: 387 LDEVHVVPANTFRLVFGSIKAHAKLGLTATLVREDDKIVDLDHLIGPKLYEANWKDLAAQ 446
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA V CAEV CPMSPEFY +YL + K+ LL+ MNP K +A QYL+ YHERRGDK I
Sbjct: 447 GHIANVLCAEVQCPMSPEFYHQYLRATSLKKTLLHCMNPTKLQACQYLMDYHERRGDKII 506
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL++YA K+ + +I+G SQ ER IL+ FK +P + TIF+SKV DTS D+PE
Sbjct: 507 VFSDNVFALEYYARKLKRLFIHGKVSQVERELILERFKEDPDIKTIFLSKVGDTSLDIPE 566
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ + E +NA+FY+LVS+DT EM +S KRQ+F
Sbjct: 567 ATCLIQISSHFGSRRQEAQRLGRILRAKRRS-EEGFNAYFYSLVSKDTDEMVFSTKRQQF 625
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD 501
L++QGY++KVIT+L G+E G+ + T DE+ LL++V A E D +
Sbjct: 626 LVDQGYAFKVITRLDGIERFPGLAFRTIDERWALLREVYHAQEKDGE 672
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA-KDKPMG 96
AGK+LVGV A T+ K LVLC S VS QW+HQFKLW+ DS I FTSE K+
Sbjct: 290 AGKTLVGVMAAGTINKSCLVLCTSAVSAGQWRHQFKLWAQIKDSQISLFTSEEQKEFQAP 349
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TYSMI++T+KRS +A++ M+++ ++EWG+++LD+
Sbjct: 350 SGVLISTYSMIANTRKRSRDAERKMEFVSSREWGLVILDE 389
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 35/60 (58%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
+ LK H SRPLWV N I E FSP DFLIAIAEPV RPE IHE + ++
Sbjct: 33 LPLKAGHDSRPLWVCENHSIVFERFSPFAEQVQDFLIAIAEPVSRPEFIHEYQLTTSSLY 92
>gi|74690569|sp|Q6E6J3.1|RAD25_ANTLO RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|47156900|gb|AAT12293.1| DNA repair helicase RAD25 [Antonospora locustae]
Length = 687
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 167/281 (59%), Positives = 214/281 (76%), Gaps = 1/281 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++ V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 353 LDEVHVVPAAMFRKVVSAVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSMQ 412
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARV+C EVWC M+ EFYREYL +R +L +MNP K++ ++LI HE G+K I
Sbjct: 413 GHIARVECVEVWCDMTAEFYREYLGQDPRRRRVLSIMNPAKFQTCEFLIRKHEALGEKII 472
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV AL+ YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NT+F+SKV DTS DLPE
Sbjct: 473 VFSDNVLALRTYALKLGKPFIYGPTGQTERMRILRQFQTNPAINTLFLSKVGDTSIDLPE 532
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A+ LIQISSH GSRRQEAQRLGRILRAK+ + +FYTLVS+DT EM YSRKRQ+F
Sbjct: 533 ASCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPGFRVYFYTLVSKDTEEMYYSRKRQQF 591
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAA 495
L++QGY+++ +T L G + + + EQ +LL VL A
Sbjct: 592 LVDQGYTFRTVTALEGFRDTDVRVFRGKAEQRELLATVLLA 632
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC SGVSVEQW+ Q +ST + RFTSE K+
Sbjct: 256 AGKTLVGITAMCTIKKPCIVLCTSGVSVEQWRQQVLAFSTVSADAVSRFTSERKEMFEAD 315
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GIL+TTY+M++ + +RS EA + M+WL+ EWG+M+LD+ VP A + V
Sbjct: 316 AGILITTYTMLAFSGRRSAEAQRVMEWLRGTEWGLMILDEVHVVPAAMFRKV 367
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++ +K +H PL V+ NG I LE+F+ + A DFLIAIAEPV RP H+HE P +
Sbjct: 34 EIRMKQEHTECPLLVSHNGIIILETFTANAKQATDFLIAIAEPVSRPAHVHEYRITPYSL 93
Query: 226 F 226
+
Sbjct: 94 Y 94
>gi|323452822|gb|EGB08695.1| hypothetical protein AURANDRAFT_521, partial [Aureococcus
anophagefferens]
Length = 634
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 165/267 (61%), Positives = 201/267 (75%), Gaps = 13/267 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+ FRRVL + +HCKLGLTATL+REDD I DLNFLIGPKLYEANW++L K
Sbjct: 368 LDEVHVVPAQTFRRVLAVCNAHCKLGLTATLVREDDLITDLNFLIGPKLYEANWMDLTKN 427
Query: 275 GFIARVQCAEVWCPMSPEFYREYL---VCKTSK----------RLLLYVMNPNKYRATQY 321
G +A VQC EVWCPM+ FYREYL C R LLYVMNPNK+RA +Y
Sbjct: 428 GHLANVQCVEVWCPMAGPFYREYLRHGGCGQEAKPRAGGDARCRRLLYVMNPNKFRACEY 487
Query: 322 LIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
L+ YHE+RGDK IVFSD+VFAL YA + +P IYG T ++ER +L +F+ N VNTI
Sbjct: 488 LVHYHEQRGDKVIVFSDDVFALLKYATALGRPAIYGATKEAERQAVLGSFRFNSLVNTIC 547
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+SKV D + DLPEANV++Q+SSH GSRRQEAQRLGRILRAK A + +NAFFYTLVS D
Sbjct: 548 LSKVGDVAIDLPEANVIVQVSSHFGSRRQEAQRLGRILRAKPSADGDGFNAFFYTLVSTD 607
Query: 442 TMEMSYSRKRQRFLINQGYSYKVITKL 468
T EM YS KRQ++L++QGY++KV+T L
Sbjct: 608 TAEMFYSAKRQQYLVDQGYTFKVVTDL 634
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-DKPMG 96
AGK+L + A TV++ LVLC + +V QWK QF LW++ D + I FT+E K D
Sbjct: 271 AGKTLTAIVAAATVKRSTLVLCTNATAVAQWKAQFALWTSLDPARISLFTAEVKEDLHPE 330
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
CG+L+TTY M+S +RS + ++ ++ ++ +EWG+MLLD+
Sbjct: 331 CGVLITTYHMVSFGGQRSLDGERLIEAVKAREWGLMLLDE 370
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAK 224
+ + LKPDH +RPLW P+G IFLE+ S +Y A+DFL+AIAEPV RPEH+HE P
Sbjct: 3 SDLELKPDHANRPLWACPDGSIFLEARSALYGPAYDFLVAIAEPVARPEHVHEYRLTPYS 62
Query: 225 MFRRV 229
++ V
Sbjct: 63 LYAAV 67
>gi|290983477|ref|XP_002674455.1| predicted protein [Naegleria gruberi]
gi|284088045|gb|EFC41711.1| predicted protein [Naegleria gruberi]
Length = 818
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 180/349 (51%), Positives = 233/349 (66%), Gaps = 26/349 (7%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FR + +++HCKLGLTATLLRED+K DLNFLIGPKLYEANWL+LQK+G
Sbjct: 478 EVQVYPADSFR--ASHLKAHCKLGLTATLLREDNKQEDLNFLIGPKLYEANWLDLQKKGH 535
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A VQC EVWCPM+ EFY EYL +K+ L YVMNPNK+RA ++LI YHE+ GDK IVF
Sbjct: 536 LANVQCVEVWCPMTAEFYAEYLSSNYAKQSLYYVMNPNKFRACEFLIRYHEKHGDKIIVF 595
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN F L+ YA+K+ PYIYG T +SER+ +L FK + NT+F+SKV DT+ D+PEA
Sbjct: 596 SDNTFTLEQYAIKLKLPYIYGKTRESERLDVLNRFK-SGNFNTVFLSKVGDTAIDIPEAT 654
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQISSH GSRRQEAQRLGRILR K G + A+FY+LVSQDT EM ++ KRQ+FL
Sbjct: 655 VIIQISSHFGSRRQEAQRLGRILRPKNGTNKQ---AYFYSLVSQDTKEMFFATKRQQFLT 711
Query: 457 NQGYSYKVITKL-----AGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGG 511
NQGYS++V+ + + E + M T++++ + L+ V A + + E + +
Sbjct: 712 NQGYSFRVLADIQKYYSSNRVETKFM--KTKEDELEFLKLVKNAKDVNGKLEDIPND--D 767
Query: 512 VSGGFKRSGGTMASLS-GADDAVYHESRFSNVK----------HPLFKK 549
G ++A LS GA++ YH SN HPLFKK
Sbjct: 768 FQSGSHSGDTSLALLSGGANEVYYHTFEASNSSKKKKKVAKTVHPLFKK 816
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 4/103 (3%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK----DK 93
AGK+LVGVTA T++K LVLC + VSV QWK+QF+LWST DD I TS+ K
Sbjct: 376 AGKTLVGVTAASTIKKHTLVLCINTVSVFQWKNQFRLWSTIDDDSILVHTSQQKATLPKD 435
Query: 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
P +L+TTYSMIS +RS E+ Q M++++N+EWG+++ D+
Sbjct: 436 PNKAVVLITTYSMISFKGRRSEESKQMMEYIENREWGLLMFDE 478
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
Query: 165 AQMVLKPDHKSRPLWV--APNG--HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+ M LK DH+SRP+WV NG HIF+E+ +PVY+ A+DFL+AIAEP+ R E++HE
Sbjct: 77 SSMDLKSDHESRPIWVCSGDNGDYHIFMETNTPVYQQAYDFLVAIAEPISRMENLHE 133
>gi|328770595|gb|EGF80636.1| hypothetical protein BATDEDRAFT_33160 [Batrachochytrium
dendrobatidis JAM81]
Length = 769
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 222/314 (70%), Gaps = 5/314 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FRRVLT V +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L R
Sbjct: 421 LDEVHVVPANIFRRVLTTVAAHTKLGLTATLVREDDKIEDLNFLIGPKLYEANWMDLATR 480
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V+ E+WCPM+ +FY++Y+ K KR LL VMNP K+ A QYLI + E++GDK I
Sbjct: 481 GHIAKVEAVEIWCPMTGDFYQQYINSKPGKRRLLCVMNPAKFMAAQYLIKWREKQGDKII 540
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLN-PKVNTIFVSKVADTSFDLP 393
VFSDNVFAL++YA + KPYIYG TS ER +IL F+ N P TIF+SKV DTS DLP
Sbjct: 541 VFSDNVFALEYYAKALKKPYIYGGTSHEERSRILNYFRNNHPMFRTIFLSKVGDTSLDLP 600
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA LIQISS GSRRQEAQR+GRILRAK+ E + + FYTLVS+DT E+ +S +R+
Sbjct: 601 EATCLIQISSQFGSRRQEAQRMGRILRAKRRN-EEGFKSRFYTLVSKDTDEVVFSARRRT 659
Query: 454 FLINQGYSYKVITKLAGM--EEERG-MHYSTRDEQGQLLQQVLAASETDADEERVAGEVG 510
FL++QGY + V+ M EE+RG + S +Q +LLQ V +E +E V E
Sbjct: 660 FLVDQGYEFHVVPNYLSMIPEEDRGELLMSQYSDQVKLLQLVKQQTEEVGMDEVVVAEAD 719
Query: 511 GVSGGFKRSGGTMA 524
++G + G+M
Sbjct: 720 DLAGVWMSQSGSMG 733
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CTV+K LVLC + +SVEQW ++F+ WST D I +FT+++K + G
Sbjct: 324 AGKTLVGITAACTVKKSTLVLCTNALSVEQWANEFRKWSTLQDHQIAKFTADSKQRFAGN 383
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TY+MISHT KR+++ + ++++ EWG+M+LD+
Sbjct: 384 SGVVVSTYTMISHTGKRAYDTQKMIEFVNGHEWGLMILDE 423
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 34/49 (69%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LKPD RPLWV NG I LE+FSP+ A DFLI IAEPV RP IHE
Sbjct: 5 LKPDAHRRPLWVCHNGRIILEAFSPLVTQAQDFLITIAEPVTRPSRIHE 53
>gi|240277609|gb|EER41117.1| DNA repair helicase RAD25 [Ajellomyces capsulatus H143]
Length = 1379
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/356 (51%), Positives = 229/356 (64%), Gaps = 58/356 (16%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 418 LDEVHVVPASMFRKVTSAIATQTKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 477
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY+MNP K
Sbjct: 478 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRK------------------- 518
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 519 ------------------AYIYGGTPQNERLRILENFQHNEQVNTIFLSKIGDTSLDLPE 560
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 561 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 619
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV-GGVS 513
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +ET A E V ++ S
Sbjct: 620 LVDQGYAFKVITHLEGIENLEGLAYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERS 679
Query: 514 GG-----------FKRSGGTMASLSGADDAVYHE---SRFSNVK-----HPLFKKF 550
GG KRS T++ L+G +D Y E SR +K HPLFKK
Sbjct: 680 GGPKARGAAKKVAVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKEKVGHHPLFKKI 735
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D S I FTS+ K+K
Sbjct: 321 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRN 380
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+V+TYSM+S T+ RS +A++ M W+Q++EWG+M+LD+
Sbjct: 381 TGIIVSTYSMVSQTRARSHDAEKMMDWMQSREWGLMILDE 420
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAI 205
+K D + FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL I
Sbjct: 24 KKADIQRQDPHFGYKDF-SSLPLKPDHANRPLWIEPLKGTITLESFSPLAPQAQDFLTTI 82
Query: 206 AEPVCRPEHIHE 217
AEP+ RP H+HE
Sbjct: 83 AEPLSRPTHLHE 94
>gi|66359840|ref|XP_627098.1| RAD25, helicase involved in DNA repair [Cryptosporidium parvum Iowa
II]
gi|46228526|gb|EAK89396.1| RAD25, helicase involved in DNA repair [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/333 (50%), Positives = 225/333 (67%), Gaps = 19/333 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV++HCKLGLTATL+REDD I DL +LIGPKLYEANW+ELQ RG+
Sbjct: 443 EVQFAPAPAFRRINGIVKAHCKLGLTATLVREDDLIQDLQWLIGPKLYEANWMELQDRGY 502
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C+EVWCPM+ +YREYL C +K+ L+V NPNK R ++LI +HE+RGDK +VF
Sbjct: 503 LAKALCSEVWCPMTASYYREYLDCSHAKKRKLWVCNPNKLRVCEFLIHWHEQRGDKILVF 562
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SD++FAL + AV + KP++ G ERI+ILQ FK NP NTIF+SKV D + D+P AN
Sbjct: 563 SDSLFALINIAVALKKPFVCGSVDTLERIKILQQFKENPNFNTIFLSKVGDNAIDIPLAN 622
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGA----------------IAEE-YNAFFYTLVS 439
V+IQIS + SRRQEAQRLGRILR K + I+E+ YNAFFY+L+S
Sbjct: 623 VVIQISFNFASRRQEAQRLGRILRPKPYSGMKSGKVINKTSDSPNISEQPYNAFFYSLLS 682
Query: 440 QDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETD 499
+DT EM Y+ KRQ+F+I+QGYSY+VIT + +HYS + Q ++L+ + + +T
Sbjct: 683 KDTEEMEYADKRQQFIIDQGYSYRVITMDSFPLNNENLHYSDIETQEKMLELIKQSDDTL 742
Query: 500 ADEE--RVAGEVGGVSGGFKRSGGTMASLSGAD 530
D+E E+G +S T+ +S D
Sbjct: 743 DDDEFGNNIDEIGKISNNSDILSSTITKVSNID 775
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L G+TA CT+RK L+L S V+V QWK QF+ ++T D + + TS K+ P+G
Sbjct: 342 AGKTLTGITAACTMRKSVLILTTSAVAVSQWKFQFEQYTTVDPNKVHCLTSSNKE-PLGP 400
Query: 97 ---CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+LVTTY+M++ T KRS + Q + +Q +EWG+++ D+
Sbjct: 401 TSEAVVLVTTYTMMAFTGKRSASSSQIISQIQEREWGLLIFDE 443
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+DY +++ LK DH RP+WV P+G I +E+F + A +FL+ I+EP+ RPE IHE
Sbjct: 39 RDYSSELKLKSDHDKRPIWVFPDGLIIIETFHQSSKAACEFLVTISEPLSRPELIHE 95
>gi|326436958|gb|EGD82528.1| hypothetical protein PTSG_03178 [Salpingoeca sp. ATCC 50818]
Length = 804
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 177/346 (51%), Positives = 232/346 (67%), Gaps = 9/346 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV T+PAK FR +LT + +HCKLGLTATL+RED KI DL F++GPKLYEANW++LQ+
Sbjct: 457 LDEVQTVPAKTFRELLTRIPAHCKLGLTATLVREDGKINDLRFMVGPKLYEANWIDLQEA 516
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G+IARV+C EVWCPM FY +Y + ++++ L V NPNK+ A ++LI HE RGDK
Sbjct: 517 GYIARVKCFEVWCPMVQSFYEQYWRTDSHAQKMKLCVCNPNKFSACEFLIRKHEARGDKI 576
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSD++FAL A K+NK YI G T +R +IL +K TIF SK+AD +FDLP
Sbjct: 577 IVFSDDIFALHELATKLNKEYISGDTPDRQRHEILDRYKKRDDFRTIFFSKIADNAFDLP 636
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAE--EYNAFFYTLVSQDTMEMSYSRKR 451
EANVLIQ+SS GG+RRQEAQRLGRILRAK E NAFFY+LVS+DT EM+Y+ R
Sbjct: 637 EANVLIQVSSQGGARRQEAQRLGRILRAKSNTKTRPGEPNAFFYSLVSRDTKEMAYATAR 696
Query: 452 QRFLINQGYSYKVITKLAGMEEERGMH---YSTRDEQGQLLQQVLAASET--DADEERVA 506
QRFL++QGY+++V+T+L G EEE + + + EQ QLL ++ +S +A A
Sbjct: 697 QRFLVDQGYAFQVLTRLVGFEEEAKVTPFVFDSPAEQKQLLIKIAESSSMIEEARNAANA 756
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFRG 552
+ +G +M + +GA D VY E R K PL K G
Sbjct: 757 AKKAKRAGKSVVQRASMDAFAGAGDMVYEERRVRK-KKPLRKLLFG 801
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 69/106 (65%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L GVTA T+++RA+VLC S V+VEQW+ +F W D ++ +FTS K P
Sbjct: 361 AGKTLTGVTAVSTIKRRAIVLCTSNVAVEQWRREFVRWCDVDHRVVRKFTSADKHMPPDN 420
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
IL TYSM++ Q RS EA Q ++W+ + WGIM+LD+ V AK
Sbjct: 421 CILCATYSMLAAKQNRSVEAKQMIEWITGRSWGIMILDEVQTVPAK 466
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 118 DQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177
D+ + W + DDG ++ +++A P DE GA D + M LKPDH+ RP
Sbjct: 21 DEAIDWAE---------DDGEAEDFEELQRREEAVAPHDEDGAIDM-SHMQLKPDHEVRP 70
Query: 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+ V P+ IFLE+FSPVY+ A +FLIAIAEP RPE IHE
Sbjct: 71 IIVTPDKRIFLETFSPVYQQAVEFLIAIAEPERRPESIHE 110
>gi|325189553|emb|CCA24040.1| unknown putative [Albugo laibachii Nc14]
Length = 788
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 234/355 (65%), Gaps = 42/355 (11%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PAKMFR+V+ + HCKLGLTATL+REDD I DLNFLIGPKLYEANW++L +
Sbjct: 459 LDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQS 518
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS--KRLLLYVMNPNKYRATQYLIAYHERRGDK 332
GF+A V C EVWCPM+ EFYREYL + KR LLYV NPNK+ A ++LI YHE+RGDK
Sbjct: 519 GFLANVSCVEVWCPMTGEFYREYLKENKNARKRALLYVANPNKFTAAEFLIQYHEKRGDK 578
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
+VFSD+V ++ F+ +P VN I +SKV DTS DL
Sbjct: 579 ILVFSDDVCLCTAFS-----------------------FRNSPLVNVICISKVGDTSIDL 615
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
PEANV+IQ+SSH GSRRQEAQRLGRILR K A +NAFFYTL+S DT EM YS KRQ
Sbjct: 616 PEANVIIQVSSHFGSRRQEAQRLGRILRPKANATG-GFNAFFYTLISTDTHEMFYSNKRQ 674
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS-ETDADEERVAGE--- 508
++L++QGY++KV+T+L + +G+ ++ ++ Q +LL++VL+A E+ A +E A
Sbjct: 675 QYLVDQGYTFKVVTELYDTKSFKGV-FTRKEAQRELLEEVLSADVESAARDENAAIRDDE 733
Query: 509 -------VGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVKHPLFK-KFRG 552
GG GG K+ ++ +LSGAD Y E + +H LF+ ++RG
Sbjct: 734 DLSRLELAGGADGGRKKKKMSLGALSGADGTKYMEYSAGSGARQRHNLFRDRYRG 788
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 73/108 (67%), Gaps = 3/108 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--KPM 95
AGK+L GVTA T++K L LC S VSVEQW QFK+W+ +S I RFTS AKD P
Sbjct: 362 AGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTSQFKMWTNIPESKIARFTSVAKDYIDP- 420
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++VTTY+MI+ KR+ +++ MQ +Q +EWG +LLD+ V AK
Sbjct: 421 NSGVIVTTYTMIAFGGKRARASEEVMQLIQGREWGSLLLDEVHVVPAK 468
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 144 KNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLI 203
KN + DDA P +F A + +KPDH SRP+WV PNG IFLE+FSP+Y+ A+DFL+
Sbjct: 70 KNDQTDDATAPYFDF------ANLQMKPDHASRPVWVCPNGRIFLEAFSPIYKQAYDFLV 123
Query: 204 AIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRED 249
AIAEPV RPE +HE P ++ V +++ L + L + +
Sbjct: 124 AIAEPVSRPEFLHEYKLTPYSLYAAVSVSIETESVLNVLERLSKNN 169
>gi|402466417|gb|EJW01911.1| DNA repair helicase rad25, partial [Edhazardia aedis USNM 41457]
Length = 670
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 161/254 (63%), Positives = 199/254 (78%), Gaps = 2/254 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I + + KLGLTATL+REDDKI DLNFLIGPKLYEA+W L +
Sbjct: 409 LDEVHVVPANMFRKVVSI-RHYTKLGLTATLVREDDKIEDLNFLIGPKLYEADWQSLSAQ 467
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V+C E+WC M+ +FY++YL+ KR +L VMNP K+ YLI HE+ GDK I
Sbjct: 468 GHIAKVECIEIWCRMTADFYQQYLIQSVRKRRVLSVMNPGKFMICDYLIRKHEKEGDKII 527
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+ALK YA+K+NKP+IYGPT Q ER++IL+ F+ NPKVN IF+SKV DTS DLPE
Sbjct: 528 VFSDNVYALKSYALKLNKPFIYGPTGQFERMRILKQFQSNPKVNCIFLSKVGDTSIDLPE 587
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ + FFYTLVS+DT EM YS KRQ+F
Sbjct: 588 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPGFKVFFYTLVSKDTDEMFYSAKRQQF 646
Query: 455 LINQGYSYKVITKL 468
L++QGYS+ V+ L
Sbjct: 647 LVDQGYSFTVMQDL 660
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 69/99 (69%), Gaps = 2/99 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
+GK+LVG+TA CT++ L+LC S VSVEQWK Q K ++ D IC FTS+ KD
Sbjct: 315 SGKTLVGITAVCTMKHPTLILCTSSVSVEQWKAQIKHYTNISDDEICIFTSDKKDNI--S 372
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+L+TTY+M++++ KRS EA + + + N+ WG+++LD+
Sbjct: 373 NVLITTYTMLAYSGKRSREAQRIIDMINNKVWGLLILDE 411
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+VLK + P + + I LE+F P++ A DFLIAIAEP+ RPEHIHE
Sbjct: 24 IVLKANPADFPFSINFDTLIILETFHPLFPQATDFLIAIAEPISRPEHIHE 74
>gi|223999873|ref|XP_002289609.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974817|gb|EED93146.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 625
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 158/260 (60%), Positives = 201/260 (77%), Gaps = 6/260 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PAKMFRRV+ V++HC+LGLTATL+REDD I+DLNFLIGPKLYEANW++L +
Sbjct: 366 MDEVHVVPAKMFRRVIGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTTQ 425
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G++A VQC EVW PM+ F REYL+ ++ + LLYVMNP+K RA ++L+ +HE RGDK
Sbjct: 426 GYLANVQCVEVWTPMTGPFMREYLMADNARLKQLLYVMNPSKLRAAEFLMRFHEERGDKI 485
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSD V++LK YA + +P IYG TS+ ER IL F+ + + TI +SKV DTS DLP
Sbjct: 486 IVFSDLVYSLKLYAAMLKRPMIYGETSERERQAILGTFRTSDALRTICISKVGDTSIDLP 545
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKK-----GAIAEEYNAFFYTLVSQDTMEMSYS 448
EANV+IQ+SSH GSRRQEAQRLGRILR K G+ +NAFFYTLVS DT EM YS
Sbjct: 546 EANVIIQVSSHFGSRRQEAQRLGRILRPKSYTQTDGSNRSSFNAFFYTLVSTDTQEMFYS 605
Query: 449 RKRQRFLINQGYSYKVITKL 468
KRQ++LI+QGY++K++T L
Sbjct: 606 TKRQQYLIDQGYTFKIVTTL 625
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 76/108 (70%), Gaps = 3/108 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--KPM 95
AGK+L GVTA T++K + LC + VSV QWK+QFKLW+ D IC FTS+ K+ P
Sbjct: 269 AGKTLTGVTAAQTIKKSVVCLCTNAVSVLQWKYQFKLWTNIPDENICVFTSDKKEDINPG 328
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GC +L+TTY+MIS+ +RS ++ + M ++++EWG++L+D+ V AK
Sbjct: 329 GC-VLITTYTMISYGGQRSDKSAEVMNIIRSREWGLLLMDEVHVVPAK 375
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAK 224
+ + LK DH SRP W P+G I+LE+F +Y A+DFL+AI+EPV RPE++HE P
Sbjct: 3 SDLTLKSDHISRPCWTCPDGTIYLEAFHDLYTKAYDFLVAISEPVARPEYLHEYKLTPYS 62
Query: 225 MFRRVLTIVQS 235
++ V T +++
Sbjct: 63 LYAAVATNIET 73
>gi|71030142|ref|XP_764713.1| DNA helicase [Theileria parva strain Muguga]
gi|68351669|gb|EAN32430.1| DNA helicase, putative [Theileria parva]
Length = 770
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/356 (48%), Positives = 232/356 (65%), Gaps = 24/356 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV +PA FRR+ I++SHCKLGLTATL+REDD I DL +LIGPKLYEANWLELQ++G+
Sbjct: 413 EVQFVPAPAFRRINEIIRSHCKLGLTATLVREDDLIRDLQWLIGPKLYEANWLELQEKGY 472
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+V C E+WCPM+ FYREYL + K+ L+ NP K +YL+ +HE RGDK IVF
Sbjct: 473 LAKVICKEIWCPMTAPFYREYLRSSSVKKRRLWSCNPVKLITCEYLLKFHESRGDKVIVF 532
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +N+P+IYG S +ERI IL FK NTIF+SKV D + D+P AN
Sbjct: 533 SDNLFALLHAAKLLNRPFIYGKVSSAERIIILNKFKNETTFNTIFLSKVGDNALDIPCAN 592
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQIS + SRRQEAQRLGRILR K +NAFFY+LVS+DT EM ++ KRQ+F+I
Sbjct: 593 VVIQISFNFASRRQEAQRLGRILRPKSKTDEHGFNAFFYSLVSKDTQEMVFADKRQQFII 652
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV--------AGE 508
+QGY+Y V + +++ + YS Q +LLQ ++ ++E DEE V E
Sbjct: 653 DQGYAYNVTSSSTIVKDTSNLMYSKPSIQQELLQDIITSAEDVDDEEEVNPTDLFTPTNE 712
Query: 509 VG-GVSGGFKRSGGTMASLSGA-------------DDAVYHESRFSNVKHPLFKKF 550
+S K++G +ASLSG+ + +S+ S+ +HP FKK
Sbjct: 713 SSLQMSVSQKKTG--LASLSGSLKNQLQYKHLLPPSEKPAKKSKASSEQHPFFKKL 766
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L G+ A CTVRK VL S V+VEQW QF+ ++ + + TSE K
Sbjct: 312 AGKTLTGIVAACTVRKSIFVLTTSAVAVEQWIKQFQDFTNISRTNLISLTSEHKTDLWDE 371
Query: 97 --CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEK 148
G+L++TY+M+S+T+K ++ + ++ +EWG+++ D+ VP A + + +
Sbjct: 372 KEAGVLISTYTMMSYTRKHRENTERILSQIKQREWGMLIFDEVQFVPAPAFRRINE 427
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHT 220
+DY + + LK +H +RPLWV P+G+++LE F+PV + A DF++ IAEPVCRPE IHE
Sbjct: 30 RDY-SNLKLKNNHSARPLWVCPDGYLYLELFTPVSKQALDFIVTIAEPVCRPELIHEYQV 88
Query: 221 IPAKMFRRV 229
++ V
Sbjct: 89 TVFSLYTAV 97
>gi|429327267|gb|AFZ79027.1| rad25/xp-B DNA repair helicase, putative [Babesia equi]
Length = 779
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/288 (55%), Positives = 209/288 (72%), Gaps = 1/288 (0%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV +PA FRR+ I++SHCKLGLTATL+REDD I DL +LIGPKLYEANWLELQ++GF
Sbjct: 419 EVQFVPAPAFRRINEIIRSHCKLGLTATLVREDDLIKDLQWLIGPKLYEANWLELQEKGF 478
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+V C E+WCPM+ FYREYL ++K+ L+ NP K +YL+ YHE +GDK IVF
Sbjct: 479 LAKVICQEIWCPMTAAFYREYLRSDSAKKRRLWSCNPIKLLTCEYLLKYHEAKGDKVIVF 538
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +N+P+IYG S +ERI IL FK N+IF+SKV D + D+P AN
Sbjct: 539 SDNLFALLHVARTLNRPFIYGKVSSAERIIILNKFKNETTFNSIFLSKVGDNALDIPCAN 598
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQIS + SRRQEAQRLGRILR K +NAFFY+LVS+DT EM ++ KRQ+F+I
Sbjct: 599 VVIQISFNFASRRQEAQRLGRILRPKSKTDEHGFNAFFYSLVSKDTQEMIFADKRQQFII 658
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS-ETDADEE 503
+QGY+Y V + +++ R + Y+ Q LLQ+++A+S + D DEE
Sbjct: 659 DQGYAYNVSSSTNVVKDTRNLVYANPKMQQDLLQEIIASSDDVDNDEE 706
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+DY +++V+K H++RP+WV P+G+++LE F+PV + A DFL+ IAEPVCRPE IHE
Sbjct: 30 RDY-SKLVIKESHQNRPVWVCPDGYLYLELFTPVSKQALDFLVTIAEPVCRPELIHE 85
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A CTVRK VL S V+VEQW QF ++ + + TSE K
Sbjct: 318 AGKTLTGIVAACTVRKSIFVLTTSAVAVEQWIKQFLDFTNISATHLLSLTSENKADLWNI 377
Query: 98 ---GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEK 148
G+LV+TY+M+S+T+K ++ + ++ +EWG+++ D+ VP A + + +
Sbjct: 378 DESGVLVSTYTMMSYTRKHRENTERILNQIKEREWGLLIFDEVQFVPAPAFRRINE 433
>gi|302836588|ref|XP_002949854.1| hypothetical protein VOLCADRAFT_90307 [Volvox carteri f. nagariensis]
gi|300264763|gb|EFJ48957.1| hypothetical protein VOLCADRAFT_90307 [Volvox carteri f. nagariensis]
Length = 1119
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 177/331 (53%), Positives = 218/331 (65%), Gaps = 37/331 (11%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR V++ +SHCKLGLTATL+RED++IADLNFLIGPKLYEANWL+L +
Sbjct: 777 MDEVHVVPAQMFRTVISTCKSHCKLGLTATLVREDERIADLNFLIGPKLYEANWLDLTRA 836
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G IA VQCAEVWCPM+ EFYREYL + +R LLY MNPNK
Sbjct: 837 GHIANVQCAEVWCPMTGEFYREYLKKENGPRRQLLYCMNPNK-----------------I 879
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDN++AL+ YA +M KP+IYGPTS +ER ++L FK NP +NT+F+SKV D S D+P
Sbjct: 880 IVFSDNIWALREYATRMRKPFIYGPTSHAERTRVLHAFKHNPDINTVFLSKVGDNSLDIP 939
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EANVLIQISSH GSRRQEAQRLGRILRAKKG D EM YS KRQ+
Sbjct: 940 EANVLIQISSHAGSRRQEAQRLGRILRAKKGMGG-----------GPDGEEMYYSTKRQQ 988
Query: 454 FLINQGYSYKVITKLA-GMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE-VGG 511
FLI+QGYS+KV+T L G+ YS + Q LL +VL+A +A E + E G
Sbjct: 989 FLIDQGYSFKVVTNLLDAAAGSAGLMYSDKSSQLDLLSRVLSAGMEEAGVETLRDEDAEG 1048
Query: 512 VSGGFKRSG------GTMASLSGADDAVYHE 536
++ + G MA+L+GA Y E
Sbjct: 1049 LAAAAGQRPAARRRVGDMAALTGASGIRYLE 1079
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGKSLVGV A V+K L LC S VSV+QWK+QF+LW++ D I RFTSE K+ P
Sbjct: 680 AGKSLVGVAAASRVKKSCLCLCTSSVSVDQWKYQFQLWTSIGDHQIARFTSENKEMFPGE 739
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+LVTT++MI+ + KRS E+++ M ++++EWG++L+D+
Sbjct: 740 VGVLVTTFTMIAFSGKRSEESERIMNCIRSREWGLLLMDE 779
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 26/92 (28%)
Query: 186 IFLESFSPVYRH-------------------AHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
IFLE+FSP+Y+ A+DFLIAI+EPVCRPE +HE P ++
Sbjct: 371 IFLETFSPIYKQVKGGKEGLKGVEHRRGLGLAYDFLIAISEPVCRPEAMHEYQLTPHSLY 430
Query: 227 RRVL------TIVQSHCKL-GLTATLLREDDK 251
V TI+ +L GL+ L E+ K
Sbjct: 431 AAVSVGLETETIINVLNRLVGLSKVQLSEETK 462
>gi|67588048|ref|XP_665323.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54655954|gb|EAL35093.1| hypothetical protein Chro.80227, partial [Cryptosporidium hominis]
Length = 751
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 215/304 (70%), Gaps = 17/304 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV++HCKLGLTATL+REDD I DL +LIGPKLYEANW+ELQ RG+
Sbjct: 443 EVQFAPAPAFRRINGIVKAHCKLGLTATLVREDDLIQDLQWLIGPKLYEANWMELQDRGY 502
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C+EVWCPM+ +YREYL C +K+ L+V NPNK R ++LI +HE+RGDK +VF
Sbjct: 503 LAKALCSEVWCPMTASYYREYLDCSHAKKRKLWVCNPNKLRVCEFLIRWHEQRGDKILVF 562
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SD++FAL + AV + KP++ G ERI+ILQ FK NP NTIF+SKV D + D+P AN
Sbjct: 563 SDSLFALINIAVALKKPFVCGSVDTLERIKILQQFKENPNFNTIFLSKVGDNAIDIPLAN 622
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGA----------------IAEE-YNAFFYTLVS 439
V+IQIS + SRRQEAQRLGRILR K + I+E+ YNAFFY+L+S
Sbjct: 623 VVIQISFNFASRRQEAQRLGRILRPKPYSGMKSGKVINKTSDSPNISEQPYNAFFYSLLS 682
Query: 440 QDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETD 499
+DT EM Y+ KRQ+F+I+QGYSY+VIT + +HYS + Q ++L+ + + +T
Sbjct: 683 KDTEEMEYADKRQQFIIDQGYSYRVITMDSFPLNNENLHYSDIETQEKMLELIKQSDDTL 742
Query: 500 ADEE 503
D+E
Sbjct: 743 DDDE 746
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L G+TA CT+RK L+L S V+V QWK QF+ ++T D + + TS K+ P+G
Sbjct: 342 AGKTLTGITAACTMRKSILILTTSAVAVSQWKFQFEQYTTVDPNKVHCLTSSNKE-PLGP 400
Query: 97 ---CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+LVTTY+M++ T KRS + Q + +Q +EWG+++ D+
Sbjct: 401 TSEAVVLVTTYTMMAFTGKRSTSSSQIISQIQEREWGLLIFDE 443
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+DY +++ LK DH RP+WV P+G I +E+F + A +FL+ I+EP+ RPE IHE
Sbjct: 39 RDYSSELKLKSDHDKRPIWVFPDGLIIIETFHQSSKAACEFLVTISEPLSRPELIHE 95
>gi|84995690|ref|XP_952567.1| DNA repair helicase [Theileria annulata strain Ankara]
gi|65302728|emb|CAI74835.1| DNA repair helicase, putative [Theileria annulata]
Length = 770
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/322 (52%), Positives = 220/322 (68%), Gaps = 11/322 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV +PA FRR+ I++SHCKLGLTATL+REDD I DL +LIGPKLYEANWLELQ++G+
Sbjct: 413 EVQFVPAPAFRRINEIIRSHCKLGLTATLVREDDLIRDLQWLIGPKLYEANWLELQQKGY 472
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+V C E+WCPM+ FYREYL + K+ L+ NP K +YL+ +HE RGDK IVF
Sbjct: 473 LAKVICKEIWCPMTAPFYREYLRSSSVKKRRLWSCNPVKLITCEYLLRFHESRGDKVIVF 532
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +N+P+IYG S +ERI IL FK NTIF+SKV D + D+P AN
Sbjct: 533 SDNLFALLHAAKLLNRPFIYGKVSSAERIVILNKFKNETTFNTIFLSKVGDNALDIPCAN 592
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQIS + SRRQEAQRLGRILR K +NAFFY+LVS+DT EM ++ KRQ+F+I
Sbjct: 593 VVIQISFNFASRRQEAQRLGRILRPKSKTDEHGFNAFFYSLVSKDTQEMVFADKRQQFII 652
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERV--------AGE 508
+QGY+Y V + +++ + YS Q +LLQ ++ ++E DEE V E
Sbjct: 653 DQGYAYNVTSFSTIVKDTSNLLYSKPSIQQELLQDIITSAEDVDDEEEVNPTDLFTPTNE 712
Query: 509 VG-GVSGGFKRSGGTMASLSGA 529
VS K++G +ASLSG+
Sbjct: 713 SSLQVSISQKKTG--LASLSGS 732
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHT 220
+DY + + LK +H +RPLWV P+G+++LE F+PV + A DF++ IAEPVCRPE IHE
Sbjct: 30 RDY-SNLKLKTNHTARPLWVCPDGYLYLELFTPVSKQALDFIVTIAEPVCRPELIHEYQV 88
Query: 221 IPAKMFRRV 229
++ V
Sbjct: 89 TVFSLYTAV 97
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD---KP 94
AGK+L G+ A CTVRK VL S V+VEQW QF ++ + + TSE K
Sbjct: 312 AGKTLTGIVAACTVRKSIFVLTTSAVAVEQWIKQFLDFTNISRTNLISLTSEHKTDLWDE 371
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEK 148
G+L++TY+M+S+T+K ++ + ++ +EWG+++ D+ VP A + + +
Sbjct: 372 KDAGVLISTYTMMSYTRKHRENTERILNQIKQREWGMLIFDEVQFVPAPAFRRINE 427
>gi|401408975|ref|XP_003883936.1| hypothetical protein NCLIV_036860 [Neospora caninum Liverpool]
gi|325118353|emb|CBZ53904.1| hypothetical protein NCLIV_036860 [Neospora caninum Liverpool]
Length = 968
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 165/317 (52%), Positives = 215/317 (67%), Gaps = 13/317 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ +V+SHC+LGLTATL+REDD I DL +LIGPKL+EANW+ELQ +GF
Sbjct: 585 EVQFAPAPAFRRINDLVKSHCRLGLTATLVREDDLIKDLQWLIGPKLFEANWIELQDQGF 644
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+ARV C EVWCPM+ +FYREYL C +K+ L+V NP K ++L+ YHE RGDK +VF
Sbjct: 645 LARVSCQEVWCPMTADFYREYLRCSHAKQRKLWVCNPTKLMTCEWLLRYHEARGDKVLVF 704
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDNVFAL H A +N+P+IYG S ER+ IL FK N++F+SKV D + D+P AN
Sbjct: 705 SDNVFALLHTAKALNRPFIYGQVSAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCAN 764
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKK--GAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
V+IQIS + SRRQEAQRLGRILRAK G E +NAFFY+L+S+DT+EM Y+ KRQ+F
Sbjct: 765 VVIQISFNFASRRQEAQRLGRILRAKPQAGDEGENFNAFFYSLISKDTLEMVYADKRQQF 824
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE----------- 503
+I+QGY+YKVI E + Y Q ++L +LA+ + D +
Sbjct: 825 IIDQGYAYKVIHSRDLPLEPEKLIYGDAQRQREILTDILASDDNDITLDDDGDDASRPML 884
Query: 504 RVAGEVGGVSGGFKRSG 520
VAG+ + GG R+G
Sbjct: 885 SVAGDRAHLFGGSSRAG 901
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+L G+TA CT+RK +VL S V+V+QW+ QF+ ++T D S + T+E K P+
Sbjct: 484 AGKTLTGITAACTLRKSVMVLTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPV 543
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+LV+TY+M++ + +RS A++ MQ ++ +EWG+++ D+
Sbjct: 544 DEAGVLVSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDE 585
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G +DY +++ LK DH RPLWV +G I LE+FS R A++ L+ +AEP+CR + +HE
Sbjct: 102 GFRDYGSKLSLKADHAHRPLWVCQDGSILLETFSAASRQANELLLTMAEPICRGDFVHEF 161
Query: 219 H 219
Sbjct: 162 Q 162
>gi|221488103|gb|EEE26317.1| helicase, putative [Toxoplasma gondii GT1]
Length = 997
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/282 (55%), Positives = 207/282 (73%), Gaps = 4/282 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ +V+SHC+LGLTATL+REDD I DL +LIGPKL+EANW+ELQ +GF
Sbjct: 601 EVQFAPAPAFRRINDLVKSHCRLGLTATLVREDDLIKDLQWLIGPKLFEANWIELQDQGF 660
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+ARV C EVWCPM+ +FYREYL C +K+ L+V NP K ++L+ YHE RGDK +VF
Sbjct: 661 LARVSCQEVWCPMTADFYREYLRCSHAKQRKLWVCNPTKLMTCEWLLRYHEARGDKILVF 720
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDNVFAL H A +N+P+IYG S ER+ IL FK N++F+SKV D + D+P AN
Sbjct: 721 SDNVFALLHTAKALNRPFIYGQVSAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCAN 780
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKK--GAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
V+IQIS + SRRQEAQRLGRILRAK G E +NAFFY+L+S+DT+EM Y+ KRQ+F
Sbjct: 781 VVIQISFNFASRRQEAQRLGRILRAKPQAGDEGENFNAFFYSLISKDTLEMVYADKRQQF 840
Query: 455 LINQGYSYKVI-TKLAGMEEERGMHYSTRDEQGQLLQQVLAA 495
+I+QGY+YKVI ++ M+ ++ + Y Q ++L +LA+
Sbjct: 841 IIDQGYAYKVIHSRDLPMQPDK-LIYGDPQRQREILTDILAS 881
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+L G+TA CT+RK ++L S V+V+QW+ QF+ ++T D S + T+E K P+
Sbjct: 500 AGKTLTGITAACTLRKSVMILTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPV 559
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+LV+TY+M++ + +RS A++ MQ ++ +EWG+++ D+
Sbjct: 560 DEAGVLVSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDE 601
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G +D+ +++ LK DH RPLWV P+G I LE+FS R A + L+ +AEP+CR + +HE
Sbjct: 122 GFRDFGSKLALKVDHAHRPLWVCPDGTILLETFSAANRQATELLLTMAEPICRGDFVHEF 181
Query: 219 H 219
Sbjct: 182 Q 182
>gi|221508622|gb|EEE34191.1| helicase, putative [Toxoplasma gondii VEG]
Length = 997
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/282 (55%), Positives = 207/282 (73%), Gaps = 4/282 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ +V+SHC+LGLTATL+REDD I DL +LIGPKL+EANW+ELQ +GF
Sbjct: 601 EVQFAPAPAFRRINDLVKSHCRLGLTATLVREDDLIKDLQWLIGPKLFEANWIELQDQGF 660
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+ARV C EVWCPM+ +FYREYL C +K+ L+V NP K ++L+ YHE RGDK +VF
Sbjct: 661 LARVSCQEVWCPMTADFYREYLRCSHAKQRKLWVCNPTKLMTCEWLLRYHEARGDKILVF 720
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDNVFAL H A +N+P+IYG S ER+ IL FK N++F+SKV D + D+P AN
Sbjct: 721 SDNVFALLHTAKALNRPFIYGQVSAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCAN 780
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKK--GAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
V+IQIS + SRRQEAQRLGRILRAK G E +NAFFY+L+S+DT+EM Y+ KRQ+F
Sbjct: 781 VVIQISFNFASRRQEAQRLGRILRAKPQAGDEGENFNAFFYSLISKDTLEMVYADKRQQF 840
Query: 455 LINQGYSYKVI-TKLAGMEEERGMHYSTRDEQGQLLQQVLAA 495
+I+QGY+YKVI ++ M+ ++ + Y Q ++L +LA+
Sbjct: 841 IIDQGYAYKVIHSRDLPMQPDK-LIYGDPQRQREILTDILAS 881
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+L G+TA CT+RK ++L S V+V+QW+ QF+ ++T D S + T+E K P+
Sbjct: 500 AGKTLTGITAACTLRKSVMILTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPV 559
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+LV+TY+M++ + +RS A++ MQ ++ +EWG+++ D+
Sbjct: 560 DEAGVLVSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDE 601
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G +D+ +++ LK DH RPLWV P+G I LE+FS R A + L+ +AEP+CR + +HE
Sbjct: 122 GFRDFGSKLALKVDHAHRPLWVCPDGTILLETFSAANRQATELLLTMAEPICRGDFVHEF 181
Query: 219 H 219
Sbjct: 182 Q 182
>gi|237832699|ref|XP_002365647.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
gi|211963311|gb|EEA98506.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
Length = 997
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/282 (55%), Positives = 207/282 (73%), Gaps = 4/282 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ +V+SHC+LGLTATL+REDD I DL +LIGPKL+EANW+ELQ +GF
Sbjct: 601 EVQFAPAPAFRRINDLVKSHCRLGLTATLVREDDLIKDLQWLIGPKLFEANWIELQDQGF 660
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+ARV C EVWCPM+ +FYREYL C +K+ L+V NP K ++L+ YHE RGDK +VF
Sbjct: 661 LARVSCQEVWCPMTADFYREYLRCSHAKQRKLWVCNPTKLMTCEWLLRYHEARGDKILVF 720
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDNVFAL H A +N+P+IYG S ER+ IL FK N++F+SKV D + D+P AN
Sbjct: 721 SDNVFALLHTAKALNRPFIYGQVSAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCAN 780
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAK--KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
V+IQIS + SRRQEAQRLGRILRAK G E +NAFFY+L+S+DT+EM Y+ KRQ+F
Sbjct: 781 VVIQISFNFASRRQEAQRLGRILRAKPQAGDEGENFNAFFYSLISKDTLEMVYADKRQQF 840
Query: 455 LINQGYSYKVI-TKLAGMEEERGMHYSTRDEQGQLLQQVLAA 495
+I+QGY+YKVI ++ M+ ++ + Y Q ++L +LA+
Sbjct: 841 IIDQGYAYKVIHSRDLPMQPDK-LIYGDPQRQREILTDILAS 881
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+L G+TA CT+RK ++L S V+V+QW+ QF+ ++T D S + T+E K P+
Sbjct: 500 AGKTLTGITAACTLRKSVMILTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPV 559
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+LV+TY+M++ + +RS A++ MQ ++ +EWG+++ D+
Sbjct: 560 DEAGVLVSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDE 601
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G +D+ +++ LK DH RPLWV P+G I LE+FS R A + L+ +AEP+CR + +HE
Sbjct: 122 GFRDFGSKLALKVDHAHRPLWVCPDGTILLETFSAANRQATELLLTMAEPICRGDFVHEF 181
Query: 219 H 219
Sbjct: 182 Q 182
>gi|160331520|ref|XP_001712467.1| rad25 [Hemiselmis andersenii]
gi|159765915|gb|ABW98142.1| rad25 [Hemiselmis andersenii]
Length = 638
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 155/280 (55%), Positives = 205/280 (73%), Gaps = 5/280 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+VL I+++HCKLGLTATLLRED K+ D+ FLIGPKLYEANWL+L++
Sbjct: 356 LDEVHIVPANVFRKVLGIIRTHCKLGLTATLLREDRKVGDIGFLIGPKLYEANWLDLEQI 415
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GF+A CAE+ C M P+F+ YL S R +L +NPNK R +LI YHE RGD+ +
Sbjct: 416 GFLAMACCAEICCSMPPDFFEHYLCESNSTRQILCALNPNKARICDFLIRYHESRGDRIL 475
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA KM K +IYG T ERI+IL+NF+ + T+F+S++ DTS DLPE
Sbjct: 476 VFSDNVFALRSYATKMLKAFIYGATGSLERIRILKNFQ-KHEGQTLFISRIGDTSIDLPE 534
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANV++QISSH GSRRQEAQRLGRILR K ++ AFFY+LV+ +T EM Y+ KRQ+F
Sbjct: 535 ANVILQISSHYGSRRQEAQRLGRILRPK----SKSRKAFFYSLVTSNTEEMFYANKRQQF 590
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLA 494
L+ QGY +K I +G+ + + + T E+ LL+QVL+
Sbjct: 591 LVGQGYDFKTILNFSGINKIPNLIFETEKEKKLLLKQVLS 630
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTS-EAKDKPMG 96
AGK++VG+T+ ++K AL++CNS VSVEQW+ QF WS + I F + + + G
Sbjct: 258 AGKTIVGITSVTMIKKTALIVCNSTVSVEQWRRQFIKWSNINPKKIKSFIAGQYSNLENG 317
Query: 97 CG-ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I+VTTYSMIS +R+ + + ++++EWGI++LD+
Sbjct: 318 TSDIIVTTYSMISFGGQRAKLSASLLNEIKSREWGIVILDE 358
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
+PLWV P+G I E+FS DFLI I+EPV R + IHE P ++ V
Sbjct: 6 KPLWVFPDGFIMFETFSNPIEEVEDFLITISEPVSRTKLIHEYVLTPYALYAAV 59
>gi|403221729|dbj|BAM39861.1| DNA repair helicase [Theileria orientalis strain Shintoku]
Length = 771
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 225/355 (63%), Gaps = 22/355 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV +PA FRR+ ++SHCKLGLTATL+REDD I DL +LIGPKLYEANWLELQ++GF
Sbjct: 413 EVQFVPAPAFRRINETIRSHCKLGLTATLVREDDLIRDLQWLIGPKLYEANWLELQEKGF 472
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+V C E+WCPM+ FYREYL T K+ L+ NP K +YL+ +HE RGDK IVF
Sbjct: 473 LAKVICKEIWCPMTAPFYREYLRSTTVKKRRLWSCNPVKLITCEYLLKFHESRGDKVIVF 532
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +N+P+IYG S +ERI IL FK NTIF+SKV D + D+P AN
Sbjct: 533 SDNLFALLHAAKLLNRPFIYGKVSSAERIIILNKFKNENTFNTIFLSKVGDNALDIPCAN 592
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQIS + SRRQEAQRLGRILR K A +NAFFY+LVS+DT EM ++ KRQ+F+I
Sbjct: 593 VVIQISFNFASRRQEAQRLGRILRPKSKADEHGFNAFFYSLVSKDTQEMVFADKRQQFII 652
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE--------------TDADE 502
+QGY+Y V + +++ + Y+ Q +LLQ ++ +SE T DE
Sbjct: 653 DQGYAYNVTSSSDIVKDTSNLIYTRAHIQQELLQDIITSSEDVDEEEEINPTDLFTPNDE 712
Query: 503 ERVAGEV-------GGVSGGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKF 550
+ V G+SG K+ L + +++ +HP FKKF
Sbjct: 713 SSIQTSVSQKKTGLAGLSGSLKKQLQYKHLLPPPEKP-RKKAKPPTEQHPFFKKF 766
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 18/110 (16%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHT 220
+DY +++ LK +H +RPLWV P+G+I+LE F+PV + A DF++ IAEPVCRPE IHE
Sbjct: 30 RDY-SKLRLKDNHLTRPLWVCPDGYIYLELFTPVSKQALDFIVTIAEPVCRPELIHEYQV 88
Query: 221 IPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLN----FLIGPKLYEA 266
++ V +GLT D+ + +LN ++ PKL +A
Sbjct: 89 TVFSLYTAV--------SVGLTI-----DELLNNLNKFSKNVLPPKLKDA 125
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L G+ A CTVRK VL S V+VEQW QF ++ S + T+E K
Sbjct: 312 AGKTLTGIVAACTVRKSIFVLTTSAVAVEQWIKQFLDFTNISRSNLLSLTAEHKRDLWDE 371
Query: 97 --CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEK 148
G+L++TY+M+S+++K ++ + ++ +EWG+++ D+ VP A + + +
Sbjct: 372 KEAGVLISTYTMMSYSRKHREHTERILNQIKQREWGLLIFDEVQFVPAPAFRRINE 427
>gi|209876984|ref|XP_002139934.1| DNA repair helicase rad25 family protein [Cryptosporidium muris
RN66]
gi|209555540|gb|EEA05585.1| DNA repair helicase rad25 family protein [Cryptosporidium muris
RN66]
Length = 815
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 208/296 (70%), Gaps = 18/296 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ +IV++HCKLGLTATL+REDD I DL +LIGPKLYEANW+ELQ RG+
Sbjct: 418 EVQFAPAPAFRRINSIVKAHCKLGLTATLVREDDLIQDLQWLIGPKLYEANWMELQDRGY 477
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+AR C+EVWCPM+ EF++EYL C +KR L+V NPNK + ++LI +HE+RGDK +VF
Sbjct: 478 LARALCSEVWCPMTSEFFKEYLNCSHAKRRKLWVCNPNKLKVCEFLIRWHEQRGDKILVF 537
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SD++FAL AV + +P++ G ERI+ILQ FK NP NTIF+SKV D + D+P AN
Sbjct: 538 SDSLFALISVAVALKRPFVCGSVDILERIKILQQFKQNPNFNTIFLSKVGDNAIDIPLAN 597
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAK------KGAIA------------EEYNAFFYTLV 438
V+IQIS + SRRQEAQRLGRILR K K +++ YNAFFY+L+
Sbjct: 598 VVIQISFNFASRRQEAQRLGRILRPKPYSNWQKKSLSASIENTEDPVNETSYNAFFYSLL 657
Query: 439 SQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLA 494
S+DT EM Y+ KRQ+F+I+QGYSY+V+ + + +H+S Q LL ++ A
Sbjct: 658 SKDTEEMQYADKRQQFIIDQGYSYRVLPINSFPLDNENLHFSELSAQIDLLNKIKA 713
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+TA CT+RK L+L S V+V QW+ QF+ ++ D + TS KD +G
Sbjct: 317 AGKTLTGITAACTMRKSILILTTSAVAVTQWRQQFEDYTNVDSRRLHCLTSGTKDS-LGP 375
Query: 98 G----ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
IL+TTY+M++ T KRS + + +Q +EWG+++ D+
Sbjct: 376 ASEAEILITTYTMMAFTGKRSASSAHIINQIQEREWGLLIFDE 418
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+DY A + LK DH SRPLWV P+G I +E+F A +FL +AEP+ RPE IHE
Sbjct: 43 RDYSASLNLKLDHASRPLWVFPDGLIIVETFHVSSSAACEFLSTVAEPLSRPELIHE 99
>gi|195129211|ref|XP_002009052.1| GI11476 [Drosophila mojavensis]
gi|193920661|gb|EDW19528.1| GI11476 [Drosophila mojavensis]
Length = 430
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 209/433 (48%), Positives = 253/433 (58%), Gaps = 63/433 (14%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AA KN E +D + DE+GAKDYRAQM L+PDH +RPLWVAPNG
Sbjct: 45 DGVPGAASKNAETNDENINTDEYGAKDYRAQMQLRPDHANRPLWVAPNG----------- 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADL 255
H FL + + PV + H H+ ++ I + C+ + I +
Sbjct: 94 ---HVFLESFS-PVYK--HAHDF----------LIAISEPVCR----------PEHIHEY 127
Query: 256 NFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYL-VCKTSKRLLLYVMNPN 314
L LY A + LQ I ++ + PE E++ +C S + V+ N
Sbjct: 128 K-LTAYSLYAAVSVGLQTHDIIEYLK--RLSKTTIPEGILEFIRLCTLSYGKVKLVLKHN 184
Query: 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQI---LQNF 371
KY ++ + H K + D V + +I G Q L
Sbjct: 185 KY----FIESPHPEVLQK--LLKDPVIQNCRLIRNEGEGFIQGTMDSKAITQFGTKLPAT 238
Query: 372 KLNP-------KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG 424
NP VNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG
Sbjct: 239 SDNPAEDAASTSVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG 298
Query: 425 AIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDE 484
AIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL+NQGYSYKVIT L GM+ E + Y T++E
Sbjct: 299 AIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTETDLMYGTQEE 358
Query: 485 QGQLLQQVLAASETDADEERVAGEVG---GVSGGFKRSGGTMASLSGADDAVYHESRFSN 541
QGQLLQ VL+AS+ D ++E+V GE G G SG KR GG ++S+SG DDAVY+E R N
Sbjct: 359 QGQLLQLVLSASDLDCEDEKVPGEPGYRPGGSGTAKRMGG-LSSMSGGDDAVYYEHRRKN 417
Query: 542 VK--HPLFKKFRG 552
HPLFKKFRG
Sbjct: 418 NGNVHPLFKKFRG 430
>gi|156089441|ref|XP_001612127.1| DNA repair helicase rad25 family protein [Babesia bovis]
gi|154799381|gb|EDO08559.1| DNA repair helicase rad25 family protein [Babesia bovis]
Length = 770
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 154/287 (53%), Positives = 205/287 (71%), Gaps = 1/287 (0%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV +PA FRR+ IV+SHCKLGLTATL+REDD I DL +LIGPKLYEANWLELQ++GF
Sbjct: 413 EVQFVPAPAFRRINDIVRSHCKLGLTATLVREDDLIKDLQWLIGPKLYEANWLELQEKGF 472
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+V C E+WCPM+ FYREYL +K+ L+ NP K +YL+ +HE RGDK IVF
Sbjct: 473 LAKVICKEIWCPMTAPFYREYLRSDCAKKRRLWSCNPVKLATCEYLLKFHEARGDKVIVF 532
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL + A K+ +P+I G S +ERI IL FK N+I +SKV D + D+P AN
Sbjct: 533 SDNLFALHNVAKKLCRPFICGKVSSAERIIILNKFKNENTFNSIILSKVGDNALDIPCAN 592
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQIS + SRRQEAQRLGRILR K +NAFFY+LVS+DT EM ++ KRQ+F+I
Sbjct: 593 VVIQISFNFASRRQEAQRLGRILRPKSKTDENGFNAFFYSLVSKDTQEMVFADKRQQFII 652
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE 503
+QGY+Y V + +++E + Y+ + + +LL+++ + TD DEE
Sbjct: 653 DQGYAYNVTSSSEIVKDESNLIYAKPEVREELLREINVQT-TDVDEE 698
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD---KP 94
AGK+L G+ A CTVRK VL S V+VEQW QF+ ++ + TS+ K
Sbjct: 312 AGKTLTGIVAACTVRKPIFVLTTSAVAVEQWVKQFQEFTNISAERVVTLTSDHKSDLWDE 371
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G G++++TY+M++ T+K + + ++ ++WG+++ D+ VP A + +
Sbjct: 372 KGAGVVISTYTMMAFTRKHKESTENILNQIKQRDWGLLIFDEVQFVPAPAFRRI 425
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+DY + LK DH++RP+WV P+G+++L+ + R A DFL IAEP+CRPE++HE
Sbjct: 29 RDY-TDIKLKKDHENRPMWVCPDGYLYLDISAKASRQAQDFLTTIAEPICRPEYLHE 84
>gi|399216282|emb|CCF72970.1| unnamed protein product [Babesia microti strain RI]
Length = 750
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 224/355 (63%), Gaps = 37/355 (10%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ V+SHCKLGLTATL+REDD I DL ++IGPKLYEANWLELQ++G+
Sbjct: 407 EVQFAPAPAFRRINDNVRSHCKLGLTATLVREDDLIRDLQWIIGPKLYEANWLELQEQGY 466
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+V C EVWCPM+ FY+EYL + +K+ L+ NP K +YLI YHE RGDK IVF
Sbjct: 467 LAKVLCQEVWCPMTAPFYKEYLKSQHAKQRKLWSCNPVKLAVCEYLIRYHEARGDKLIVF 526
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SD VFAL H A +P+IYG S +ERI IL FK + NTIF+SKV D + D+P AN
Sbjct: 527 SDVVFALLHMARSCARPFIYGKVSATERIAILTKFKNSNDFNTIFLSKVGDNALDIPCAN 586
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQIS + SRRQEAQRLGRILR K A + +NAFFY+LVS+DT EM YS KRQ+F+I
Sbjct: 587 VVIQISFNFASRRQEAQRLGRILRPKPKADSRGFNAFFYSLVSKDTQEMVYSDKRQQFII 646
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLL----------------QQVLAASETDA 500
+QGYSY VI+ E + Y+ + + +LL Q++A +T
Sbjct: 647 DQGYSYNVISCNEFPIETMDLIYNNANVREELLLHILSSPEDLDEDDEEDQIMANEQTPV 706
Query: 501 DEERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFS-----NVKHPLFKKF 550
+R+ G V G++GG V ++ R S N HPLF++F
Sbjct: 707 IRQRMEGLV-GLTGGM---------------PVVNQERPSKQAKLNSMHPLFRRF 745
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+L G+ A CT+ K LVL S V+VEQW QF ++ + + TS+ K P+
Sbjct: 306 AGKTLTGIIAACTISKSVLVLTTSAVAVEQWIKQFLDYTNISTNKLLALTSDCKSDIWPI 365
Query: 96 -GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M+++++K S ++ M+ ++ ++WG+++ D+
Sbjct: 366 ESSGVLISTYTMMTYSRKHSEMTERIMRQIRERDWGLLVFDE 407
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 18/123 (14%)
Query: 132 MLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESF 191
M LD G+P A D + + G +DY + LKP+H+ RP+WV P+G++ LE F
Sbjct: 3 MDLDSGLPYTA------DSSDLWSR--GFRDY-SNFELKPNHRDRPVWVCPDGYLILEMF 53
Query: 192 SPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTA-TLLREDD 250
+ V + A D + IAEP+CRP+ +HE ++ V +GL A L+R D
Sbjct: 54 TNVSKQALDLISTIAEPICRPDLLHEYQITVFSLYAAV--------SVGLLADDLIRNLD 105
Query: 251 KIA 253
K +
Sbjct: 106 KFS 108
>gi|167523483|ref|XP_001746078.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775349|gb|EDQ88973.1| predicted protein [Monosiga brevicollis MX1]
Length = 835
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/342 (51%), Positives = 216/342 (63%), Gaps = 26/342 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV T+PA FR +LT + SHCKLGLTATL+RED KI DL FL+GPKLYEANW++LQ
Sbjct: 481 LDEVQTVPAAKFRALLTEIPSHCKLGLTATLVREDGKIDDLRFLVGPKLYEANWMDLQAA 540
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRL--LLYVMNPNKYRATQYLIAYHERRGDK 332
G IARVQC EVWC M+ FY EYL K L L V NP K+ +YLI HE R DK
Sbjct: 541 GHIARVQCIEVWCRMTEGFYEEYLRGKNRIHLKRQLCVCNPIKFMYCEYLIRLHEARQDK 600
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSD+ FAL+ A++M K +I G +R I+ +K P TIF SK+AD +FDL
Sbjct: 601 IIVFSDDKFALRTLAMQMGKEHIDGDVPDRQRHDIINRYKTTPSFRTIFFSKIADNAFDL 660
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAE--EYNAFFYTLVSQDTMEMSYSRK 450
PEANVLIQISSHGGSRRQEAQRLGRILR KK + EYNA+FY+LVSQDT+EM+Y+ K
Sbjct: 661 PEANVLIQISSHGGSRRQEAQRLGRILRKKKNDRTKPGEYNAYFYSLVSQDTLEMAYATK 720
Query: 451 RQRFLINQGYSYKVITKLAGMEEE---RGMHYSTRDEQGQLLQQVLAASETD------AD 501
RQRFL V+ L G E+E R + T +Q QLL ++LA D
Sbjct: 721 RQRFL--------VMKYLPGFEDEGRTRPYAFGTEHKQTQLLSRILANKMPGYGVCCAQD 772
Query: 502 EERVAGEVGG-----VSGGFKRSGGTMASLSGADDAVYHESR 538
EE VG +R +++S SGA++ VY E R
Sbjct: 773 EEGRTSIVGDDDDDLYPAAVQRRATSLSSFSGANNMVYQEIR 814
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
DE+GA D R + LKPDH +RP+ V P+G IFLE+FSP+Y+ A+DFLIAIAEP+CRPEHI
Sbjct: 76 DEYGAIDMRHALELKPDHPNRPILVTPDGQIFLETFSPIYKQAYDFLIAIAEPICRPEHI 135
Query: 216 HE 217
HE
Sbjct: 136 HE 137
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L GVTA T++KRA+VLC S V+VEQW +F+ W D S+I +FT + K+ P
Sbjct: 385 AGKTLTGVTAVSTIKKRAIVLCTSTVAVEQWCSEFRRWCNVDPSIIRKFTRDDKELPPED 444
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I+ TYSM++ + RS EA + + +L+ +EWGIM+LD+ V A K
Sbjct: 445 CIICCTYSMLAPKKNRSEEAARVINFLRKREWGIMVLDEVQTVPAAK 491
>gi|330040674|ref|XP_003239990.1| DNA repair helicase [Cryptomonas paramecium]
gi|327206916|gb|AEA39092.1| DNA repair helicase [Cryptomonas paramecium]
Length = 624
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/281 (54%), Positives = 204/281 (72%), Gaps = 5/281 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+VL I+++H KLGLTATLLRED K+ D+NFLIGPKLYE NWL+L+K
Sbjct: 339 LDEVHVVPANVFRKVLGIIKTHSKLGLTATLLREDRKVGDINFLIGPKLYETNWLDLEKF 398
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G++A CAE+ C M ++Y YL S R +L +NPNK +LI YHE+RGD +
Sbjct: 399 GYLATACCAEICCNMPSDYYSCYLSESISTRQVLCALNPNKAEICDFLIKYHEKRGDHVL 458
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ K +IYG T ER+++L+NF+ + K T+F+S++ DTS DLPE
Sbjct: 459 VFSDNVFALRSYATKLKKSFIYGATGSLERMRLLKNFQ-SRKGQTLFISRIGDTSIDLPE 517
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANV+IQISSH GSRRQEAQRLGRILR K + +AFFY+LVS T EM YS KRQ+F
Sbjct: 518 ANVIIQISSHYGSRRQEAQRLGRILRPK----IKSKHAFFYSLVSSGTEEMFYSTKRQQF 573
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAA 495
L++QGY +K +TK G+ + + ++ +E+ LL Q+L+
Sbjct: 574 LVSQGYDFKTLTKFTGINKVNKLVFNLEEEKKTLLTQILST 614
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTS---EAKDKP 94
AGK+++G+ A C ++K +LV+CNS VSVEQWK QF WS D I +F + E K
Sbjct: 241 AGKTIIGIIAVCIIKKISLVVCNSTVSVEQWKRQFLKWSNLKDKKIKKFITGSFEMKKNI 300
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAA 142
G I++TTYSMIS +R+ + ++ ++ EWG+ LLD+ V A
Sbjct: 301 TG-EIVITTYSMISFGGQRARLSASLLREIKKDEWGVTLLDEVHVVPA 347
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
+++ +W++P+G+I E F + DFL+ ++EPV R + I E P ++ V
Sbjct: 9 ETKIIWISPSGYILFELFKKKTKEIEDFLVTVSEPVSRTKKIQEFVLTPYALYAAV 64
>gi|162605680|ref|XP_001713355.1| DNA repair helicase [Guillardia theta]
gi|13794287|gb|AAK39664.1|AF083031_21 DNA repair helicase [Guillardia theta]
Length = 617
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 203/279 (72%), Gaps = 5/279 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+VL +++++CKLGLTATLLRED K+ D+ FLIGPKL+EANWL+L+K
Sbjct: 340 LDEVHVVPANIFRKVLGLLKTNCKLGLTATLLREDRKVGDIGFLIGPKLFEANWLDLEKS 399
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GF+A +CAE++C M EFY YL+ S R LL +NPNK + LI YHE RGD+ +
Sbjct: 400 GFLAYAKCAEIYCKMPSEFYMNYLIQNNSTRQLLCALNPNKAKICDLLIKYHENRGDRIL 459
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA K+ + +IYG T ER++IL+NF+ + + T+F+S++ DTS DLPE
Sbjct: 460 VFSDNVFALRSYATKIKRAFIYGATGSYERMKILKNFQ-DHEGETLFISRIGDTSIDLPE 518
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANV++QISSH GSRRQEAQRLGRILR K + NAFFY+L+S T E+ YS KRQ+F
Sbjct: 519 ANVILQISSHYGSRRQEAQRLGRILRPK----TKSKNAFFYSLISSSTEEIYYSSKRQQF 574
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVL 493
LI+QGY +K IT + ++ ++ ++L Q+L
Sbjct: 575 LISQGYDFKTITNFESFNISKKLNQHESLKKTEILSQIL 613
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSE--AKDKPM 95
+GK++VG++A ++K LV+CNS VSV+QW+ Q+ W++ + I F S A +
Sbjct: 242 SGKTIVGISATSIIKKTTLVVCNSSVSVDQWRRQYIKWTSISSTRIKNFVSGEFAFLDSI 301
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAA 142
I+VTTYSMIS +R+ + ++ ++ +EWG+++LD+ V A
Sbjct: 302 VAEIVVTTYSMISFGGQRAKLSASLLREIKEREWGMVILDEVHVVPA 348
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 173 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTI 232
H +PLW+ +G+I E+F+ DFL++I+EPV R + IHE P ++ V +
Sbjct: 4 HNIKPLWLFNDGYIIFETFNCFLIEIEDFLVSISEPVVRTKLIHEYVLTPYSLYAAVTSG 63
Query: 233 VQS 235
++S
Sbjct: 64 IKS 66
>gi|207344431|gb|EDZ71579.1| YIL143Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 297
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/290 (56%), Positives = 203/290 (70%), Gaps = 16/290 (5%)
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 1 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 60
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 61 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 120
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 121 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 179
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 180 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 239
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKK 549
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 240 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRK 289
>gi|374533704|gb|AEZ53765.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Scaphiopus couchii]
Length = 172
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 156/170 (91%)
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK IVF
Sbjct: 3 IAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVF 62
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPEAN
Sbjct: 63 ADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEAN 122
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
VLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+
Sbjct: 123 VLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMA 172
>gi|399949903|gb|AFP65559.1| DNA repair helicase [Chroomonas mesostigmatica CCMP1168]
Length = 637
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/280 (54%), Positives = 203/280 (72%), Gaps = 5/280 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA +FR+VL I++SHCKLGLTATLLRED K+ D+ FLIGPKL+E NWL+L+
Sbjct: 351 LDEVHIVPATIFRKVLGIIKSHCKLGLTATLLREDRKVGDIGFLIGPKLFETNWLDLEHI 410
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GF+A +CAE+ C M F++ YL R L +NP K R +LI YHE RGD+ +
Sbjct: 411 GFLATARCAEICCQMPSIFFKHYLSKCGQIRKNLCALNPTKARICDFLIRYHESRGDRIL 470
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFAL+ YA KM K +IYG T +ERI+IL+NF+ + T+F+S++ DTS DLPE
Sbjct: 471 VFSDNVFALRSYATKMKKAFIYGTTGSNERIKILKNFQ-EQQGKTLFISRIGDTSIDLPE 529
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANV++QISSH GSRRQEAQRLGRILR K E AFFY+L+S +T E+ Y++KRQ+F
Sbjct: 530 ANVILQISSHYGSRRQEAQRLGRILRPK----IESKKAFFYSLISSNTEEIFYAKKRQQF 585
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLA 494
LI+QGY +K I G+E+ G+ + T +E+ LL Q+L+
Sbjct: 586 LISQGYDFKTILDFDGIEKISGLIFETEEEKELLLFQILS 625
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK++VG+TA V+K AL++CNS VSVEQWK QF WS I F S K +
Sbjct: 253 AGKTIVGITAVTIVKKTALIVCNSTVSVEQWKKQFIKWSNISPKKIKGFVSGQYQKISDL 312
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I++TTYSMIS + +R+ + + ++++EWGI++LD+
Sbjct: 313 SADIIITTYSMISFSGQRAKLSASLLNEIKSREWGIVILDE 353
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ 234
++PLWV P+G+I E F DFLI+IAEP+ R + IHE P ++ + + +
Sbjct: 5 NKPLWVFPDGYILFEKFLNFSEEVGDFLISIAEPISRKKLIHEYVLTPYSLYAAITSGIS 64
Query: 235 S 235
S
Sbjct: 65 S 65
>gi|403365939|gb|EJY82760.1| hypothetical protein OXYTRI_19624 [Oxytricha trifallax]
Length = 808
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/295 (54%), Positives = 207/295 (70%), Gaps = 11/295 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV +PA+MFR+VL I +SHCKLGLTATL+RED+KI DLNFLIGPKLYEANWL+LQ++
Sbjct: 476 LDEVQVVPAEMFRKVLAICKSHCKLGLTATLVREDNKIQDLNFLIGPKLYEANWLDLQEQ 535
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRL--LLYVMNPNKYRATQYLIAYHERRGDK 332
GF+ARVQC EVWC M+ EFYREYL R+ +LYV NPNK+ A QYLI HE RGDK
Sbjct: 536 GFLARVQCIEVWCEMTTEFYREYLNHNLKPRMKQVLYVNNPNKFLACQYLINLHESRGDK 595
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVFSDN+FALK YA K+ KPYI G SQSER+ IL F+ ++NTIF+SKV DTS DL
Sbjct: 596 IIVFSDNLFALKMYAKKLKKPYISGDVSQSERMGILHYFQKTNEINTIFLSKVGDTSIDL 655
Query: 393 PEANVL---IQISSHGGSRRQEA-QRLGRILRAKKGAIAE--EYNAFFYTLVSQDTMEMS 446
P ANV+ I S R+ A + + +A+K ++ + +NA+FY+LVS +T EM
Sbjct: 656 PGANVINSNIFPFSLLVVRKPSALEEFSDLNKAEKASLLQLRRFNAYFYSLVSTNTQEMY 715
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEE---RGMHYSTRDEQGQLLQQVLAASET 498
Y+ KRQ+FLI+QGY ++VI +L ++ + + +T EQ L +L ET
Sbjct: 716 YADKRQQFLIDQGYYFEVIQELPFQKDPLQLQKLQMTTIREQVDFLTSILQNDET 770
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 10/114 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+L G+ A CTV+K ++LC S VSV+QW+ QF WS +CRFTS KD PM
Sbjct: 374 AGKTLAGIIAACTVKKSTMILCTSDVSVQQWRQQFYQWSNI-AGKVCRFTSRTKD-PMFE 431
Query: 96 ------GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GI++++Y+MI++ RS + + M ++N +WG+++LD+ V A+
Sbjct: 432 SKGPDSEAGIVISSYNMIAYLGSRSGQTQKIMDTIRNTDWGLLILDEVQVVPAE 485
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 161 KDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+DY Q+ LK DH+ RP+W+ PN ++LESFSP+Y+ A +F+IAIAEPV RP +IHE
Sbjct: 38 QDYTQQIKLKEDHEKRPIWIGPNFKLYLESFSPLYKAATEFMIAIAEPVSRPTYIHE 94
>gi|374533706|gb|AEZ53766.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Scaphiopus holbrookii]
Length = 172
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 138/170 (81%), Positives = 155/170 (91%)
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+VQCAEVWCPMSPEFY EY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK IVF
Sbjct: 1 IAKVQCAEVWCPMSPEFYXEYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVF 60
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPEAN
Sbjct: 61 ADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEAN 120
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
VLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+
Sbjct: 121 VLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTHEMA 170
>gi|374533702|gb|AEZ53764.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Spea multiplicata]
Length = 171
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 137/169 (81%), Positives = 154/169 (91%)
Query: 278 ARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFS 337
A+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK IVF+
Sbjct: 1 AKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFA 60
Query: 338 DNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANV 397
DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV TSFDLPEANV
Sbjct: 61 DNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGXTSFDLPEANV 120
Query: 398 LIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
LIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+
Sbjct: 121 LIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMA 169
>gi|68070877|ref|XP_677352.1| helicase [Plasmodium berghei strain ANKA]
gi|56497437|emb|CAI00041.1| helicase, putative [Plasmodium berghei]
Length = 876
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 194/284 (68%), Gaps = 4/284 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL ++IGPKLYEANW+ELQ +GF
Sbjct: 508 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLQWIIGPKLYEANWVELQNKGF 567
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 568 LAKALCKEIWCSMPSSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 627
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 628 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKNDSTINTILLSKVGDNAIDIPIAN 687
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAE----EYNAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A + + ++FFY+LVS+DT+EM YS KRQ
Sbjct: 688 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 747
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS 496
RFLINQGY+Y V++ + + Y + Q LL+ +LA++
Sbjct: 748 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQDNLLKCILAST 791
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G DY +M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 88 GFHDYSKEMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPEIIHEF 147
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATL 245
LTI + + + TL
Sbjct: 148 Q----------LTIFSLYAAISVGITL 164
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
GK+L G+TA T++K +L L S V+VEQWK QF+ ++ I TS+ K P+
Sbjct: 407 VGKTLTGITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPI 466
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M++++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 467 NEAGVLISTYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDE 508
>gi|70953432|ref|XP_745818.1| helicase [Plasmodium chabaudi chabaudi]
gi|56526257|emb|CAH77830.1| helicase, putative [Plasmodium chabaudi chabaudi]
Length = 872
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 194/284 (68%), Gaps = 4/284 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL ++IGPKLYEANW+ELQ +GF
Sbjct: 504 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLQWIIGPKLYEANWVELQNKGF 563
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 564 LAKALCKEIWCSMPSSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 623
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 624 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKNDSTINTILLSKVGDNAIDIPIAN 683
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAE----EYNAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A + + ++FFY+LVS+DT+EM YS KRQ
Sbjct: 684 VVIQISFNFASRRQEAQRLGRIIRPKNRANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 743
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS 496
RFLINQGY+Y V++ + + Y + Q LL+ +LA++
Sbjct: 744 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQDNLLKCILAST 787
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G DY +M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 88 GFHDYSKEMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPEIIHEF 147
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATL 245
LTI + + + TL
Sbjct: 148 Q----------LTIFSLYAAISVGITL 164
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
GK+L G+TA T++K +L L S V+VEQWK QF+ ++ I TS+ K P+
Sbjct: 403 VGKTLTGITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPI 462
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M++++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 463 NEAGVLISTYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDE 504
>gi|82539946|ref|XP_724324.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478932|gb|EAA15889.1| RepB-related [Plasmodium yoelii yoelii]
Length = 870
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 194/284 (68%), Gaps = 4/284 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL ++IGPKLYEANW+ELQ +GF
Sbjct: 502 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLQWIIGPKLYEANWVELQNKGF 561
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 562 LAKALCKEIWCSMPSSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 621
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 622 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKNDSTINTILLSKVGDNAIDIPIAN 681
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAE----EYNAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A + + ++FFY+LVS+DT+EM YS KRQ
Sbjct: 682 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 741
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS 496
RFLINQGY+Y V++ + + Y + Q LL+ +LA++
Sbjct: 742 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQDNLLKCILAST 785
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G DY +M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 87 GFHDYSKEMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPEIIHEF 146
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATL 245
LTI + + + TL
Sbjct: 147 Q----------LTIFSLYAAISVGITL 163
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
GK+L G+TA T++K +L L S V+VEQWK QF+ ++ I TS+ K P+
Sbjct: 401 VGKTLTGITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPI 460
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M++++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 461 NEAGVLISTYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDE 502
>gi|221054291|ref|XP_002261893.1| helicase [Plasmodium knowlesi strain H]
gi|193808353|emb|CAQ39057.1| helicase, putative [Plasmodium knowlesi strain H]
Length = 888
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 194/284 (68%), Gaps = 4/284 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL ++IGPKLYEANW+ELQ +GF
Sbjct: 519 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLQWIIGPKLYEANWVELQNKGF 578
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 579 LAKALCKEIWCSMPSSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 638
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 639 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKNDSNINTILLSKVGDNAIDIPIAN 698
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAE----EYNAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A + + ++FFY+LVS+DT+EM YS KRQ
Sbjct: 699 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 758
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS 496
RFLINQGY+Y V++ + + Y + Q LL+ +LA++
Sbjct: 759 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQENLLKCILAST 802
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G DY M LK +H ++P+W+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 86 GFHDYSKDMKLKKNHMNKPMWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 145
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATL 245
LTI + + + TL
Sbjct: 146 Q----------LTIFSLYAAISVGVTL 162
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
GK+L G+TA T++K +L L S V+VEQWK QF+ ++ I TS+ K P+
Sbjct: 418 VGKTLTGITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPI 477
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M++++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 478 NEAGVLISTYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDE 519
>gi|237845623|ref|XP_002372109.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
gi|211969773|gb|EEB04969.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
Length = 242
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/220 (70%), Positives = 186/220 (84%), Gaps = 2/220 (0%)
Query: 289 MSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAV 348
MS EFY YL + +RLLL VMNPNK+R Q+LI YHE+R DK IVFSDNVFALK YA+
Sbjct: 1 MSAEFYSYYLRAQIGRRLLLAVMNPNKFRICQFLIKYHEQRNDKIIVFSDNVFALKKYAI 60
Query: 349 KMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSR 408
+M+KP++YG T Q+ER++ILQNF+ NPKVNTIFVSKVADTSFDLPEANVLIQIS+ GGSR
Sbjct: 61 EMDKPFLYGETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPEANVLIQISAQGGSR 120
Query: 409 RQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKL 468
RQEAQRLGRILRAKK + + +NAFFY+LVSQDT+EMSYSRKRQRFL+NQGY+YKV+ +L
Sbjct: 121 RQEAQRLGRILRAKKNS-GDGFNAFFYSLVSQDTVEMSYSRKRQRFLVNQGYAYKVVNRL 179
Query: 469 AGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE 508
GME+E + +T++ Q QLLQQVLAAS+ DA+EE + E
Sbjct: 180 PGMEKE-TLKLATKESQLQLLQQVLAASDADAEEEDIKEE 218
>gi|156081817|ref|XP_001608401.1| DNA repair helicase [Plasmodium vivax Sal-1]
gi|148800972|gb|EDL42377.1| DNA repair helicase, putative [Plasmodium vivax]
Length = 900
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 194/284 (68%), Gaps = 4/284 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL ++IGPKLYEANW+ELQ +GF
Sbjct: 531 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLQWIIGPKLYEANWVELQNKGF 590
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 591 LAKALCKEIWCSMPSSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 650
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 651 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKNDSTINTILLSKVGDNAIDIPIAN 710
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAE----EYNAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A + + ++FFY+LVS+DT+EM YS KRQ
Sbjct: 711 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 770
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS 496
RFLINQGY+Y V++ + + Y + Q LL+ +LA++
Sbjct: 771 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQENLLKCILAST 814
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 88 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 147
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATL 245
LTI + + + TL
Sbjct: 148 Q----------LTIFSLYAAISVGITL 164
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
GK+L G+TA T++K +L L S V+VEQWK QF+ ++ I TS+ K P+
Sbjct: 430 VGKTLTGITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPI 489
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M++++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 490 NEAGVLISTYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDE 531
>gi|124802985|ref|XP_001347653.1| DNA repair helicase rad25, putative [Plasmodium falciparum 3D7]
gi|23495236|gb|AAN35566.1| DNA repair helicase rad25, putative [Plasmodium falciparum 3D7]
Length = 886
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 164/368 (44%), Positives = 224/368 (60%), Gaps = 36/368 (9%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL+++IGPKLYEANW+ELQ +GF
Sbjct: 516 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLHWIIGPKLYEANWVELQNKGF 575
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 576 LAKALCKEIWCSMPCSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 635
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 636 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKHDSSINTILLSKVGDNAIDIPIAN 695
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAE----EYNAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A + + ++FFY+LVS+DT+EM YS KRQ
Sbjct: 696 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 755
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS---------------- 496
RFLINQGY+Y V++ + + Y + Q LL+ +LA++
Sbjct: 756 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQENLLKCILASTDDGNMDEDDDLFEDQS 815
Query: 497 ---------ETDAD-----EERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNV 542
+T+++ +E ++ +GG + M ++ AD +F++
Sbjct: 816 FKKDNTKVNKTNSNILLNKKEDSLKKIDNTTGGLLKLSSNM-DVTFADKKKIPTKKFAD- 873
Query: 543 KHPLFKKF 550
KH LF+KF
Sbjct: 874 KHILFRKF 881
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
GK+L G+TA T++K AL L S V+VEQWK QF+ ++ I TS+ K P+
Sbjct: 415 VGKTLTGITAASTIKKSALFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKLDLWPI 474
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M+S++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 475 NEAGVLISTYTMLSYSGKRSEQSLRIVNDIRRREWGLLVFDE 516
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 92 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 151
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATL 245
LTI + + + TL
Sbjct: 152 Q----------LTIFSLYAAISVGITL 168
>gi|116191997|ref|XP_001221811.1| hypothetical protein CHGG_05716 [Chaetomium globosum CBS 148.51]
gi|88181629|gb|EAQ89097.1| hypothetical protein CHGG_05716 [Chaetomium globosum CBS 148.51]
Length = 808
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 195/276 (70%), Gaps = 10/276 (3%)
Query: 270 ELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR 329
E+ +RG IA+VQCAEVWCPM EFY EYL + LY MNP K++A QYLI YHE R
Sbjct: 494 EMFRRGHIAKVQCAEVWCPMPTEFYDEYLRANARMKRTLYAMNPRKFQACQYLINYHEAR 553
Query: 330 GDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTS 389
GDK IVFSD +++LK YA+K+ K +IYG TSQ+ER+Q+L+NF+ NP+VNT+F+SK+ DTS
Sbjct: 554 GDKIIVFSDELYSLKQYALKLKKVFIYGGTSQNERMQVLENFQHNPEVNTLFLSKIGDTS 613
Query: 390 FDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449
DLPEA LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS
Sbjct: 614 LDLPEATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSS 672
Query: 450 KRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEV 509
KRQ FL++QGY++KVIT+LA +E+ + ++T E +LLQ+ L +E +++ ++
Sbjct: 673 KRQAFLVDQGYAFKVITQLANIEKTPDLAFATPLESRELLQRTLVDNERGGEDDVETDDL 732
Query: 510 ---------GGVSGGFKRSGGTMASLSGADDAVYHE 536
G +R+ G ++ L+G D Y E
Sbjct: 733 FGKPGRGGGRKAGNGVRRTAGMLSELAGGQDMAYIE 768
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S +SV QW+ +F WS + + FT+E+K K G
Sbjct: 388 AGKTLVGITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDVAIFTAESKQKFSGS 447
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++++++RS ++ + M +L+ +EWG+MLLD+
Sbjct: 448 TGIIVTTYSMVTNSRERSHDSKKMMDFLRGREWGLMLLDE 487
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNG-HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F +D+ + + LKPDH++RPLW+ P+ + LE F+P+ A DFLI IAEP RP +H
Sbjct: 100 FKKRDF-SYLPLKPDHQNRPLWIDPDSCTVVLERFNPLAEQATDFLITIAEPKSRPTFLH 158
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 159 EYALTPHSLYAAV 171
>gi|389582844|dbj|GAB65581.1| DNA repair helicase [Plasmodium cynomolgi strain B]
Length = 792
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/254 (56%), Positives = 181/254 (71%), Gaps = 4/254 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL ++IGPKLYEANW+ELQ +GF
Sbjct: 514 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLQWIIGPKLYEANWVELQNKGF 573
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 574 LAKALCKEIWCSMPSSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 633
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 634 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKNDSNINTILLSKVGDNAIDIPIAN 693
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAE----EYNAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A + + ++FFY+LVS+DT+EM YS KRQ
Sbjct: 694 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 753
Query: 453 RFLINQGYSYKVIT 466
RFLINQGY+Y V++
Sbjct: 754 RFLINQGYAYNVLS 767
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEV 218
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 86 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHEF 145
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATL 245
LTI + + + TL
Sbjct: 146 Q----------LTIFSLYAAISVGVTL 162
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
GK+L G+TA T++K +L L S V+VEQWK QF+ ++ I TS+ K P+
Sbjct: 413 VGKTLTGITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPI 472
Query: 96 G-CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M++++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 473 NEAGVLISTYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDE 514
>gi|294955554|ref|XP_002788563.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239904104|gb|EER20359.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 804
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/342 (45%), Positives = 212/342 (61%), Gaps = 11/342 (3%)
Query: 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH----IHEVHTIPAKM 225
+P + RP + +F S+ + R + A+ E V + E EV +PAK
Sbjct: 417 QPIPEDRPCILISTYSMFSVSYERMSRASK----AVFESVTKLEWGLLVADEVQVMPAKT 472
Query: 226 FRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEV 285
FR V T V++HCKLGLTATL+RED+ + DL +LIGPKLYEANW EL G++ARVQC EV
Sbjct: 473 FRSVATTVRAHCKLGLTATLVREDELVEDLQYLIGPKLYEANWQELVNAGYLARVQCIEV 532
Query: 286 WCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALK 344
W M P F++ YL T + LY N NK A +YL+A HE RGDK IVF DNV LK
Sbjct: 533 WSEMPPLFWKAYLETNTYHVKRALYTSNTNKLMACEYLVALHESRGDKIIVFCDNVVLLK 592
Query: 345 HYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH 404
A + K +I G S +ER+ ++ F+ + K+N I++S+V D + D+P ANV+IQISSH
Sbjct: 593 EMAQRTRKAFICGSVSMAERMACIRCFQHSDKINCIYLSQVGDNAIDIPNANVVIQISSH 652
Query: 405 GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKV 464
GSRRQEAQRLGRILR K +NA+FY+LVS+DT E Y+ KRQ++L++QGYS+KV
Sbjct: 653 YGSRRQEAQRLGRILRPKAYRDDAGFNAYFYSLVSKDTPEKEYALKRQKYLVDQGYSFKV 712
Query: 465 ITKLAGMEEERGMH--YSTRDEQGQLLQQVLAASETDADEER 504
I + G+ YS + + +L+ L A + + R
Sbjct: 713 IADFDESVRKSGLKFAYSGPEAEQHVLEMALVAGGSGGESAR 754
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-----D 92
AGK+LVG+TA T++KR +VL + V+V+QWK QF+L+ + + T+E K D
Sbjct: 363 AGKTLVGITAAATMKKRTMVLTTTAVAVDQWKRQFELFCSISPDDVITLTAENKQPIPED 422
Query: 93 KPMGCGILVTTYSMISHTQKRSWEADQTM-QWLQNQEWGIMLLDDGVPVAAK 143
+P C IL++TYSM S + +R A + + + + EWG+++ D+ + AK
Sbjct: 423 RP--C-ILISTYSMFSVSYERMSRASKAVFESVTKLEWGLLVADEVQVMPAK 471
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLES------FSPVYRHAHDFLIAIAEPVCRP 212
G D +M LKPDH+ RPLWV P+G I E+ F PV DFL+AIAEP+ RP
Sbjct: 112 GLMDLSGRMKLKPDHRDRPLWVCPDGRIIFEAGLHPDLFGPV----TDFLVAIAEPISRP 167
Query: 213 EHIH 216
+H
Sbjct: 168 SWVH 171
>gi|294940084|ref|XP_002782670.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
gi|239894522|gb|EER14465.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
Length = 796
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/342 (45%), Positives = 212/342 (61%), Gaps = 11/342 (3%)
Query: 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH----IHEVHTIPAKM 225
+P + RP + +F S+ + R + A+ E V + E EV +PAK
Sbjct: 409 QPIPEDRPCILISTYSMFSVSYERMSRASK----AVFESVTKLEWGLLVADEVQVMPAKT 464
Query: 226 FRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEV 285
FR V T V++HCKLGLTATL+RED+ + DL +LIGPKLYEANW EL G++ARVQC EV
Sbjct: 465 FRSVATTVRAHCKLGLTATLVREDELVEDLQYLIGPKLYEANWQELVNAGYLARVQCIEV 524
Query: 286 WCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALK 344
W M P F++ YL T + LY N NK A +YL+A HE RGDK IVF DNV LK
Sbjct: 525 WSEMPPLFWKAYLETNTYHVKRALYTSNTNKLMACEYLVALHESRGDKIIVFCDNVVLLK 584
Query: 345 HYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH 404
A K K +I G S +ER+ ++ F+ + K+N I++S+V D + D+P ANV+IQISSH
Sbjct: 585 EMAQKTRKAFICGSVSMAERMACIRCFQHSDKINCIYLSQVGDNAIDIPNANVVIQISSH 644
Query: 405 GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKV 464
GSRRQEAQRLGRILR K +NA+FY+LVS+DT E Y+ KRQ++L++QGYS+KV
Sbjct: 645 YGSRRQEAQRLGRILRPKAYRDDAGFNAYFYSLVSKDTPEKEYALKRQKYLVDQGYSFKV 704
Query: 465 ITKLAGMEEERGMH--YSTRDEQGQLLQQVLAASETDADEER 504
I + G+ YS + + +L+ L A + + R
Sbjct: 705 IADFDESVRKSGLKFAYSGPEAEQHVLEMALVAGGSGGESAR 746
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-----D 92
AGK+LVG+TA T++KR +VL + V+V+QWK QF+L+ + + T+E K D
Sbjct: 355 AGKTLVGITAAATMKKRTMVLTTTAVAVDQWKRQFELFCSISPDDVITLTAENKQPIPED 414
Query: 93 KPMGCGILVTTYSMISHTQKRSWEADQTM-QWLQNQEWGIMLLDDGVPVAAK 143
+P C IL++TYSM S + +R A + + + + EWG+++ D+ + AK
Sbjct: 415 RP--C-ILISTYSMFSVSYERMSRASKAVFESVTKLEWGLLVADEVQVMPAK 463
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 10/61 (16%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLES------FSPVYRHAHDFLIAIAEPVCRPEHI 215
D +M LKPDH+ RPLWV P+G I E+ F PV DFL+AIAEP+ RP +
Sbjct: 67 DLSGRMKLKPDHRDRPLWVCPDGRIIFEAGLHPDLFGPV----TDFLVAIAEPISRPSWV 122
Query: 216 H 216
H
Sbjct: 123 H 123
>gi|428175063|gb|EKX43955.1| ERCC3/XPB/SSL2/Rad25 nucleotide excision repair [Guillardia theta
CCMP2712]
Length = 694
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 230/356 (64%), Gaps = 28/356 (7%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH A+ F +VL +V +HCKLGLTATL+REDDKI +L LIGPKLYEA+W +L +
Sbjct: 339 LDEVHLSFAEKFWQVLNVVNAHCKLGLTATLVREDDKIKELKNLIGPKLYEADWQDLSNQ 398
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G++ARVQC EVWCPM+P F R YL +R L++MNPNK A ++LI + E G K I
Sbjct: 399 GYLARVQCVEVWCPMTPLFMRTYLESTARQRKDLWIMNPNKLAAVEFLIHFWEEAGHKII 458
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFK-LNPKVNTIFVSKVADTSFDLP 393
VFSD++ + Y+ +MN+ + G + R ++L F+ + +V T+F+S V D + DLP
Sbjct: 459 VFSDDLRPIVAYSDRMNRRCMTGDDDAATREEVLSKFRDASSEVKTLFMSSVGDAAIDLP 518
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V+IQISS+ GSR++EAQRLGRILR K G+ A YNA FYTLVS+DT EM YS KRQR
Sbjct: 519 DASVIIQISSNFGSRQKEAQRLGRILRPKPGSNA-RYNAHFYTLVSKDTQEMYYSTKRQR 577
Query: 454 FLINQGYSYKVITKLAGMEEERGMH----------YSTRDEQGQLLQQVLAASETDADEE 503
+L++QGY++KV+T+L E+ RG+ Y + + LLQ LA + +E
Sbjct: 578 YLVDQGYAFKVVTQL---EDHRGLDIFTMNKGAGKYGGTELEKDLLQ--LAIEDRKEAKE 632
Query: 504 RV------AGEVGGVSGGFKRSGGTMASLSGADDAVYHE---SRFSNVKHPLFKKF 550
RV AG G +G KR G+M+ LSG VY E R + +H F+KF
Sbjct: 633 RVQAALQSAGAYG--TGSVKRVSGSMSGLSGGKSLVYGEYERQRPAGPRHKDFEKF 686
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKD---K 93
AGK+LVG++A ++K A V+CN+ ++V QWK QF W+ +S + F S+ D K
Sbjct: 240 AGKTLVGISAVANIKKCAAVICNTSMAVTQWKQQFTSTWTNVKESDVTCFLSKGGDWQNK 299
Query: 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
P+G +L+TTY MI+ +KRS + ++ ++ ++WGI++LD+
Sbjct: 300 PLG-KLLITTYPMITLDKKRSKAGEALIEEIKKRQWGIIVLDE 341
>gi|22474468|emb|CAD29143.1| DNA repair helicase [Paracentrotus lividus]
Length = 157
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 128/157 (81%), Positives = 142/157 (90%)
Query: 280 VQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDN 339
VQCAEVWCPM+PEF+REYL +T KRLLLYVMNPNK+RA Q+L+ +HE+R DK IVFSDN
Sbjct: 1 VQCAEVWCPMAPEFFREYLAIRTRKRLLLYVMNPNKFRACQFLVWFHEQRNDKVIVFSDN 60
Query: 340 VFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLI 399
VFALKHYA+ M +PYIYGPTSQ ER+QILQNF+ NP VNTIF+SKV D SFDLPEANVLI
Sbjct: 61 VFALKHYAIAMGRPYIYGPTSQGERMQILQNFQHNPAVNTIFISKVGDNSFDLPEANVLI 120
Query: 400 QISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYT 436
Q+SSHGGSRRQEAQRLGRILRAKKGA AEEYNAFFYT
Sbjct: 121 QVSSHGGSRRQEAQRLGRILRAKKGAAAEEYNAFFYT 157
>gi|154418588|ref|XP_001582312.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
gi|121916546|gb|EAY21326.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
Length = 740
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 198/293 (67%), Gaps = 7/293 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV A+ FR V +V++H +LGLTAT++RED KI DL +L+GPKLYEANW+EL +
Sbjct: 422 MDEVQEAAAEKFRNVTDMVKAHTRLGLTATMVREDGKIDDLKYLVGPKLYEANWIELSES 481
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS--KRLLLYVMNPNKYRATQYLIAYHERRGDK 332
G++ARV+C E+ MS EFY++YL KR +L NPNK + L+ YHE RGDK
Sbjct: 482 GYLARVKCFEILVTMSQEFYKKYLTLDKDPIKRRVLAASNPNKIDVLESLLQYHEARGDK 541
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
+VF D + ++ A ++++P+++G S +ER ++ FK KVNTI +SK+ D + DL
Sbjct: 542 ILVFCDYLQIIEKLARRLDRPHLHGGISNNERTKLFNKFKTTKKVNTIILSKIGDKAIDL 601
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
P ANVLIQ+ SH G+R QE+QRLGR+LR K G +EYNAFFYTLVSQDT E+ YS KRQ
Sbjct: 602 PSANVLIQLCSHFGARMQESQRLGRVLRPKPGR-TDEYNAFFYTLVSQDTEEIYYSAKRQ 660
Query: 453 RFLINQGYSYK-VITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET---DAD 501
+FL++QGYSY+ V+ + + T++++ L+Q++ ++ DAD
Sbjct: 661 QFLVDQGYSYEPVVNAMERWPNSAPLSLDTQEKREDWLRQMMDTDDSLGLDAD 713
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK----DK 93
AGK+LVG+TA T+ K A+V+CNS V+QW +QF LW+ ++ TSE K DK
Sbjct: 325 AGKTLVGITAVATINKPAVVVCNSVEPVKQWANQFNLWTNVPGGVVVVLTSENKQALPDK 384
Query: 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
P C ILVTTY M++ + +RS E+ + + + ++WGI+++D+ AA+K
Sbjct: 385 P--C-ILVTTYGMLTSSARRSAESQKVIDQITGRDWGILVMDEVQEAAAEK 432
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
+ P ++RP V P+GHIFLE+FSP Y DF+IAIAEP RP+++ E P +F
Sbjct: 57 LTFIPGSENRPAIVFPDGHIFLETFSPFYSKTVDFIIAIAEPCSRPKYMQEYQISPYSLF 116
Query: 227 RRV 229
V
Sbjct: 117 AAV 119
>gi|322785271|gb|EFZ11965.1| hypothetical protein SINV_03753 [Solenopsis invicta]
Length = 586
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/212 (65%), Positives = 148/212 (69%), Gaps = 55/212 (25%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR
Sbjct: 365 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 424
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
GFIARVQCAEVWCPM+PEFYREYL CK S++L
Sbjct: 425 GFIARVQCAEVWCPMTPEFYREYLACKMSRKL---------------------------- 456
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
S+ + L+++ K N KVNTIFVSKVADTSFDLPE
Sbjct: 457 --SERIQILQNF-------------------------KFNMKVNTIFVSKVADTSFDLPE 489
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAI 426
ANVLIQISSHGGSRRQEAQRLGRILRAKKG +
Sbjct: 490 ANVLIQISSHGGSRRQEAQRLGRILRAKKGIV 521
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 269 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 328
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GIL+TTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 329 GILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 374
>gi|300123236|emb|CBK24509.2| unnamed protein product [Blastocystis hominis]
Length = 748
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 137/300 (45%), Positives = 191/300 (63%), Gaps = 20/300 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA F+ V++ V++HCKLGLTATL+RED KI DL+FLIGPKLYEANW++L +
Sbjct: 404 LDEVHVCPADSFQEVVSTVKAHCKLGLTATLVREDGKIKDLDFLIGPKLYEANWMDLTNK 463
Query: 275 GFIARVQCAEVWCPMSPEFYREYL--VCKTSKRLLLYVMNPNKYRATQYLIAYHERRG-- 330
G+++ V+C EVWC M+P FY E+L + +K+ LL V+NP K +A YL+ H +RG
Sbjct: 464 GYLSPVRCLEVWCDMNPLFYNEFLRRSKEYNKQKLLAVVNPEKLKALAYLLYIHVQRGFS 523
Query: 331 --------DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFV 382
DK +VF D++F L + Y+ G + R ++L +F+ + + +F+
Sbjct: 524 SPLLFSSSDKILVFCDSIFPLHKFGELFGYRYLDGSCGEPYRKRVLNDFRNSSAGSVVFL 583
Query: 383 SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442
SK+ DTS DLPEA VLIQ+ GSRRQEAQRLGRILR K G ++ AFFYTLVS+DT
Sbjct: 584 SKIGDTSIDLPEATVLIQVEGQEGSRRQEAQRLGRILRPKMG-LSMGNQAFFYTLVSRDT 642
Query: 443 MEMSYSRKRQRFLINQGYSYKVITKLA-GMEEE------RGMHYSTRDEQGQLLQQVLAA 495
E+ + RQR+L+ QGY+YKV+ + G+ E + + D LLQ+ L A
Sbjct: 643 KEVGNALNRQRYLMAQGYTYKVLVNITKGLTREMIQRIPKMQQICSGDFAKNLLQESLEA 702
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G D+ + + LKP+H+ +PLWV PN HIFL++ S Y A DFL AIAEP+ RP+ IHE
Sbjct: 8 LGTIDF-SLLELKPNHEKKPLWVCPNFHIFLDTSSRYYEQATDFLTAIAEPLSRPQFIHE 66
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+TA T++K +V+CNS +S QW+ F + I + +D
Sbjct: 308 AGKTIVGITAAVTIKKSCIVVCNSTLSALQWRDSFLSFCDVKGDCIRILVKDKRDPLPNP 367
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
IL+TTY + +K + E + + + ++EWG+++LD+
Sbjct: 368 CILLTTYYQLIKRRKINKEREAILNEIASREWGLLVLDE 406
>gi|123492544|ref|XP_001326086.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
gi|121908995|gb|EAY13863.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
Length = 744
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 174/252 (69%), Gaps = 1/252 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EV A FR V I ++H +LGLTATL+REDDKI+DL +L+GPKLYEANWLEL ++
Sbjct: 425 LDEVQDSAANTFRNVTDIAKAHTRLGLTATLIREDDKISDLRYLVGPKLYEANWLELSEQ 484
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G++ARV+C EV PM+ FY+ YL+ ++ +L NPNK R +I +HERRGDK +
Sbjct: 485 GYLARVKCFEVTVPMTASFYKYYLLSDHFRQRILCSSNPNKIRTVAGIIKFHERRGDKVL 544
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF D + L H A ++ P I+G T ++ R I FK KVNT+ +S V D + DLP
Sbjct: 545 VFCDIIHILIHLAGLLHCPEIHGETPENVRSSIFHEFKNGSKVNTLILSSVGDKAIDLPS 604
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A+V++Q+ S+ G+R QE+QRLGR+LR K G EE+NAFFY+ +S T ++ YS +RQ+F
Sbjct: 605 ASVVVQVCSNYGARMQESQRLGRVLRPKSGN-REEFNAFFYSCISDMTTDLKYSARRQQF 663
Query: 455 LINQGYSYKVIT 466
L++QGY Y+ ++
Sbjct: 664 LVDQGYVYEPVS 675
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFT-SEAKDKP-M 95
AGK+LVG+ A T+ K +++CN+ ++V+QW +Q ++T D I F+ +E + P
Sbjct: 327 AGKTLVGIAALATINKPTVIVCNNRLTVKQWYNQILQYATMDMKKIFLFSDTEKQALPQT 386
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAA 142
G I+++TYSM+S+ KRS ++ Q + +++++WG+++LD+ AA
Sbjct: 387 GPCIVISTYSMLSNPNKRSDKSQQIIDQIKSRDWGLLILDEVQDSAA 433
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 163 YRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIP 222
Y + + + +RP V P+GHIF+E+FSP Y DF+IAIA+P RP+++ E P
Sbjct: 54 YFKDLYILENSDNRPAIVMPDGHIFVETFSPFYSKVVDFIIAIADPCSRPKYVQEYQINP 113
Query: 223 AKMFRRV 229
+F V
Sbjct: 114 YSIFSAV 120
>gi|440298661|gb|ELP91292.1| DNA repair helicase XPB2, putative [Entamoeba invadens IP1]
Length = 632
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 125/251 (49%), Positives = 172/251 (68%), Gaps = 2/251 (0%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV + P + R +++ CKLGLTATL+RED I +L F+IGPKLYEA+W +L +G+
Sbjct: 358 EVQSAPTERVRDFCNGIKAQCKLGLTATLVREDKNINELEFMIGPKLYEASWQDLANQGY 417
Query: 277 IARVQCAEVWCPMSPEFYREYLVC-KTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA+ +C E+ CPMS FY EY+ K +R LL VMN NK A ++L+ H GDK I+
Sbjct: 418 IAKAKCFEILCPMSTSFYTEYVSAEKNIERRLLSVMNSNKVDACKFLVKQHLAHGDKVII 477
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D++ +Y+ K+N + G T + +R +IL F+ N + + ++VAD S DLP+A
Sbjct: 478 FCDDLAPASYYSKKLNCVLMDGKTQEEKRRKILDGFR-NGEHKVVLFTRVADVSIDLPDA 536
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V IQ+SS+G SRRQEAQRLGRILRAKKGA + NA+FYTL SQDT EM +S+KRQ FL
Sbjct: 537 SVAIQLSSNGASRRQEAQRLGRILRAKKGAASNRANAYFYTLTSQDTREMYFSQKRQHFL 596
Query: 456 INQGYSYKVIT 466
+++GY +K I
Sbjct: 597 LDKGYVFKTIN 607
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWST--ADDSMICRFTSEAKDKPM 95
+GK+L + AC +++ A+V+ NS SV QWK++F WST A+ +C + +
Sbjct: 259 SGKTLTAIAACMKIKRSAVVIGNSTQSVLQWKNEFLRWSTVKAESLKLCISDKKEQLGDD 318
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
C IL TTYSM+S + R ++ + + L +EWG+++ D+
Sbjct: 319 AC-ILFTTYSMLSFSGTRQYDGQRIVNDLMKREWGMIIFDE 358
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 149 DDAAVPEDEFGAKD--YRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIA 206
DD A ED G + + M LK +H P+WV IF+E+ S ++ + L +A
Sbjct: 7 DDEASSEDIDGVETGFVESDMKLKANHLELPMWVCTQSRIFVETSSDLFDEVSELLNRVA 66
Query: 207 EPVCRPEHIHE 217
E R ++IHE
Sbjct: 67 EAASRLKYIHE 77
>gi|340052988|emb|CCC47274.1| putative DNA repair helicase and transcription factor protein,
fragment [Trypanosoma vivax Y486]
Length = 922
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/264 (48%), Positives = 177/264 (67%), Gaps = 14/264 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A+ F+ VL V+ C +GL+ATLLRED +I DL L+GPKLYEANWL+L
Sbjct: 506 LDEVHTALAQNFQEVLNKVKYKCVVGLSATLLREDGRIDDLRHLVGPKLYEANWLDLTNA 565
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK-----------TSKRLLLYVMNPNKYRATQYLI 323
GF+ARV+CAEV CP+ F+ EYL+ + +S L +NP K TQ L+
Sbjct: 566 GFLARVECAEVQCPLPISFFSEYLIAQQEEDPSARRGTSSLARALVCLNPYKLWCTQALL 625
Query: 324 AYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+H R DK I+F D+V +++YA ++ P++ G TS SER +LQ+FK + K N I
Sbjct: 626 EFHRNRSPPDKVIIFCDDVEGVQYYAQHLHVPFMDGKTSDSERANVLQHFKNSSKTNAII 685
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+S++ D + D+P A+V+IQIS G SRRQEAQRLGRILR K ++ + ++FYTLVSQD
Sbjct: 686 LSRIGDVALDIPCASVVIQISGLGASRRQEAQRLGRILRPKPPSL-DSSCSYFYTLVSQD 744
Query: 442 TMEMSYSRKRQRFLINQGYSYKVI 465
T EMS S +RQ +L +QG+SY+V+
Sbjct: 745 TYEMSQSYERQSWLRDQGFSYRVL 768
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A V+KR +V+C + +SV QW+ +F W+ + + S+ K P
Sbjct: 403 AGKTLTGIGAATIVKKRTIVMCINVMSVLQWQQEFVRWTNLTEDQVTVCISDKKQMPG-- 460
Query: 98 GILVTTYSMI------SHTQKRSWEADQTMQWL---QNQEWGIMLLDDGVPVAAKKNVEK 148
+ +TTYSM+ + Q++ +A T + L + Q WG++LLD+ V A +N ++
Sbjct: 461 DVFITTYSMLIARRTSNLGQEQGEDAKLTSKILFAVEEQPWGLLLLDE-VHTALAQNFQE 519
>gi|398021308|ref|XP_003863817.1| helicase, putative [Leishmania donovani]
gi|322502050|emb|CBZ37134.1| helicase, putative [Leishmania donovani]
Length = 806
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/441 (35%), Positives = 224/441 (50%), Gaps = 53/441 (12%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+G+ C V+K LV+C VSVEQWK Q ++T + P
Sbjct: 247 AGKTLLGIMLMCKVKKPTLVVCAGSVSVEQWKSQILDYATLE-----------APPPTDD 295
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQ----NQEWGIMLLDDGVPVAAKKNVEKDDAAV 153
G +S SH K + Q +E ++L + V A K + A
Sbjct: 296 GDAANAHSGRSHQIKNGAARIACLTGKQKDPITEETDVVLTTYSMLVTAHKAKMRQQATT 355
Query: 154 PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
E G R K + K + AP G + L+
Sbjct: 356 TSSEDGLFTERGLRKRKENPKEK--LFAPYGLLILD------------------------ 389
Query: 214 HIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK 273
EVH +PA+ FR L V + +GLTAT +RED KI DL L+GPKLY+ + L
Sbjct: 390 ---EVHVMPAESFRGSLGFVDAKGVIGLTATYVREDHKILDLFHLVGPKLYDISMETLAS 446
Query: 274 RGFIARVQCAEVWCPMSPEFYREYL--VCKTSKR------LLLYVMNPNKYRATQYLIAY 325
+G++A+V C EV PM+ EF EY+ KT++ ++L NPNK + L+
Sbjct: 447 QGYLAKVHCVEVRTPMTKEFGLEYMHRSSKTARARTAPVLVMLAAANPNKMMCVRELVRQ 506
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
H G K ++ D++ LK Y +N P I G T ER+ I +F+ K+N I VS+V
Sbjct: 507 HLDAGAKILLCCDHITLLKEYGELLNAPVICGTTQHKERLMIFSDFQSTSKINVICVSRV 566
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTME 444
D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K + A +A+FY+++S DT+E
Sbjct: 567 GDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPKERAANGRTVDAWFYSIISIDTVE 626
Query: 445 MSYSRKRQRFLINQGYSYKVI 465
M+Y+ R FL++QGY+ +V+
Sbjct: 627 MNYAAHRTAFLVDQGYTCRVM 647
>gi|146097223|ref|XP_001468079.1| putative DNA repair helicase [Leishmania infantum JPCM5]
gi|134072445|emb|CAM71155.1| putative DNA repair helicase [Leishmania infantum JPCM5]
Length = 806
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/441 (35%), Positives = 224/441 (50%), Gaps = 53/441 (12%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+G+ C V+K LV+C VSVEQWK Q ++T + P
Sbjct: 247 AGKTLLGIMLMCKVKKPTLVVCAGSVSVEQWKSQILDYATLE-----------APPPTDD 295
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQ----NQEWGIMLLDDGVPVAAKKNVEKDDAAV 153
G +S SH K + Q +E ++L + V A K + A
Sbjct: 296 GDAANAHSGRSHQIKNGAARIACLTGKQKDPITEETDVVLTTYSMLVTAHKAKMRQQATT 355
Query: 154 PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
E G R K + K + AP G + L+
Sbjct: 356 TSSEDGLFTERGLRKRKENPKEK--LFAPYGLLILD------------------------ 389
Query: 214 HIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK 273
EVH +PA+ FR L V + +GLTAT +RED KI DL L+GPKLY+ + L
Sbjct: 390 ---EVHVMPAESFRGSLGFVDAKGVIGLTATYVREDHKILDLFHLVGPKLYDISMETLAS 446
Query: 274 RGFIARVQCAEVWCPMSPEFYREYL--VCKTSKR------LLLYVMNPNKYRATQYLIAY 325
+G++A+V C EV PM+ EF EY+ KT++ ++L NPNK + L+
Sbjct: 447 QGYLAKVHCVEVRTPMTKEFGLEYMHRSSKTARARTAPVLVMLAAANPNKMMCVRELVRQ 506
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
H G K ++ D++ LK Y +N P I G T ER+ I +F+ K+N I VS+V
Sbjct: 507 HLDAGAKILLCCDHITLLKEYGELLNAPVICGTTQHKERLMIFSDFQSTSKINVICVSRV 566
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTME 444
D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K + A +A+FY+++S DT+E
Sbjct: 567 GDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPKERAANGRTVDAWFYSIISIDTVE 626
Query: 445 MSYSRKRQRFLINQGYSYKVI 465
M+Y+ R FL++QGY+ +V+
Sbjct: 627 MNYAAHRTAFLVDQGYTCRVM 647
>gi|154343637|ref|XP_001567764.1| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065096|emb|CAM43210.1| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 803
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 159/444 (35%), Positives = 224/444 (50%), Gaps = 59/444 (13%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+G+ C V+K LV+C VSVEQW+ Q ++T + +A D GC
Sbjct: 247 AGKTLLGIMLMCKVKKPTLVVCAGSVSVEQWRSQILDYATLEAPPPTD-NDDAADTQGGC 305
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQ----NQEWGIMLLDDGVPVAAKKNVEKDDA-- 151
SH K + Q +E ++L + V A K + A
Sbjct: 306 ----------SHQIKSGATRIACLTGKQKDPITEETDVVLTTYSMLVTAHKAKLRQHATT 355
Query: 152 -AVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVC 210
A +D F + R K + AP G + L+
Sbjct: 356 TAGEDDLFTGRGLR-----KRKENPKEKLFAPYGLLILD--------------------- 389
Query: 211 RPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLE 270
EVH +PA+ FR L + + +GLTAT +RED KI DL L+GPKLY+ +
Sbjct: 390 ------EVHVMPAESFRGSLGFIDAKGIVGLTATYVREDHKILDLFHLVGPKLYDISMEA 443
Query: 271 LQKRGFIARVQCAEVWCPMSPEFYREYL--------VCKTSKRLLLYVMNPNKYRATQYL 322
L +G++A V C EV PM+ EF EY+ KTS ++L NPNK + L
Sbjct: 444 LASQGYLANVHCVEVRTPMTKEFGLEYMDHRRRAAGTSKTSVLVMLAAANPNKMMCVREL 503
Query: 323 IAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFV 382
+ H G K +V D++ LK Y +N P I G T ER+ I +F+ K+N I V
Sbjct: 504 VWQHLDVGAKILVCCDHIMLLKEYGELLNAPVICGSTQHKERLMIFSDFQSTSKINVICV 563
Query: 383 SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQD 441
S+V D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K + A +A+FY+++S D
Sbjct: 564 SRVGDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPKERAANGRAVDAWFYSIISMD 623
Query: 442 TMEMSYSRKRQRFLINQGYSYKVI 465
T+EM+Y+ R FL++QGY+ +V+
Sbjct: 624 TIEMNYAAHRTAFLVDQGYACRVM 647
>gi|118400703|ref|XP_001032673.1| DNA repair helicase rad25 family protein [Tetrahymena thermophila]
gi|89287017|gb|EAR85010.1| DNA repair helicase rad25 family protein [Tetrahymena thermophila
SB210]
Length = 832
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/287 (46%), Positives = 181/287 (63%), Gaps = 17/287 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
I EVH +PA F+ VL + H KLGLTAT RED+KI +L ++IGPKLYE NW +L +
Sbjct: 485 IDEVHKLPANTFQNVLKQYKFHFKLGLTATPYREDEKIINLFYMIGPKLYEENWYDLVSQ 544
Query: 275 GFIARVQCAEVWCPMSPEFYREYLV--CKTSK-------RLLLYVMNPNKYRATQYLIAY 325
GF+A+ C E+ C MS + EY KT K R L++ NP K++ +YLI
Sbjct: 545 GFLAKPYCVEIRCEMSQLWMSEYNKKDLKTGKNYYRGPQRELIHTSNPRKFKTLEYLIKV 604
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
HE RGDK +VF D + +Y + P IYG SQ ER +I FK++ ++NTIF+S+V
Sbjct: 605 HEERGDKILVFCDRPMIIDYYGNILKYPVIYGDVSQDERKKIFNLFKVSNQINTIFLSRV 664
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
DT+ DLP+ANV IQI H SRRQE QRLGRI+RAK+ +YNAF+YTLVS+ T E
Sbjct: 665 GDTAIDLPQANVGIQIGMHFKSRRQEVQRLGRIMRAKENYDG-QYNAFWYTLVSKGTDET 723
Query: 446 SYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQV 492
SY RQ+ LINQG+ Y++I +E+ + YS ++ + + Q+
Sbjct: 724 SYCLARQKCLINQGFKYEII-------DEKDLPYSQNPQKFKWMSQL 763
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
DY + + LK D++ RP+ + P+G IFLE+F+P+YR A+ FLI+I EPV RP +H
Sbjct: 60 DY-STLELKDDYRERPILICPDGIIFLETFNPLYRVAYQFLISIGEPVQRPLSMH 113
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 71/129 (55%), Gaps = 21/129 (16%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFT--------SE 89
AGK++VGV A +++ +++C+S VSV+QW+ + + W+T + + I R T +
Sbjct: 376 AGKTIVGVIAIERIKQSTVIICDSDVSVDQWRDELERWTTINKNKIVRLTGRIVDEWPTR 435
Query: 90 AKDKPMGCGILVTTYSMISHTQK--------RSWEADQTMQWLQNQEWGIMLLDD--GVP 139
D+P+ I++TTY M+ ++ + + Q + ++ ++WG+ ++D+ +P
Sbjct: 436 TTDEPI---IVITTYYMLVKKREDLPPTQIAQKSKKRQYIDSMKERKWGVCVIDEVHKLP 492
Query: 140 VAAKKNVEK 148
+NV K
Sbjct: 493 ANTFQNVLK 501
>gi|407848115|gb|EKG03589.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi]
Length = 778
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 156/440 (35%), Positives = 233/440 (52%), Gaps = 56/440 (12%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+ C V+K L+LC GVSVEQWK+Q +++ IC A D
Sbjct: 229 AGKTLVGIMLLCKVKKPTLILCAGGVSVEQWKNQILEFAS-----IC-----AHD----- 273
Query: 98 GILVTTYSMISHTQKRS-WEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPED 156
T M + + RS E + L ++ PV E+ D +
Sbjct: 274 ----TDDEMAAAEKHRSRLEGAARIACLTGKQKD--------PVT-----EETDIVLTTY 316
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
+RAQM + H S +A + H +P + + + I +
Sbjct: 317 SMLVTAHRAQMRQRAAHAS---GLAGDRHQKRRRANPKEKLFQPYGLLIMD--------- 364
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA+ ++ L++V + +GLTAT +RED KI DL L+GPKLY+ +W L G+
Sbjct: 365 EVHVMPAEAYKESLSLVDAKGVVGLTATYVREDAKIQDLFHLVGPKLYDVSWETLASSGY 424
Query: 277 IARVQCAEVWCPMSPEFYREYLV------CKTSKRLLLYVM----NPNKYRATQYLIAYH 326
+A V C EV P++ +F EY+ +++ L VM NPNK L+ H
Sbjct: 425 LANVTCIEVLTPLTRQFGLEYMQRSGEDHTLQQRKMPLLVMLAAANPNKMLCVLELVRRH 484
Query: 327 ERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386
K +VF D++ L+ Y + ++ P I G T ER+ I +F+ K+N I +S+V
Sbjct: 485 VADSSKILVFCDHLLLLREYGILLHAPVICGQTPHRERLMIFSDFQSTSKLNVICLSRVG 544
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTMEM 445
D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K + + + +A+FYT++S DT+EM
Sbjct: 545 DVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKARASNGKMVDAWFYTIISTDTLEM 604
Query: 446 SYSRKRQRFLINQGYSYKVI 465
+Y+ R FL++QGY+ ++I
Sbjct: 605 AYAAHRTAFLVDQGYTCRII 624
>gi|401427509|ref|XP_003878238.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494485|emb|CBZ29787.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 806
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 160/464 (34%), Positives = 226/464 (48%), Gaps = 63/464 (13%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+G+ C V+K LV+C GVSVEQWK Q I + P
Sbjct: 247 AGKTLLGIMLMCKVKKPTLVVCAGGVSVEQWKSQ-----------ILDYAVLEAPPPTDD 295
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQ----NQEWGIMLLDDGVPVAAKKNVEKDDAAV 153
G + H K + Q +E ++L + V A K + A
Sbjct: 296 GDAADAHGGRPHQIKNGAARIACLTGKQKDPITEETDVVLTTYSMLVTAHKAKMRQQATA 355
Query: 154 PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
E G R K + K + AP G + L+
Sbjct: 356 ISSEDGLFTGRGLRKRKENPKEK--LFAPYGLLILD------------------------ 389
Query: 214 HIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK 273
EVH +PA+ FR L V + +GLTAT +RED KI DL L+GPKLY+ + L
Sbjct: 390 ---EVHVMPAESFRESLGFVDAKGVVGLTATYVREDHKILDLFHLVGPKLYDISMETLAS 446
Query: 274 RGFIARVQCAEVWCPMSPEFYREYL--------VCKTSKRLLLYVMNPNKYRATQYLIAY 325
+G++++V C EV PM+ EF EY+ K ++L NPNK + L+
Sbjct: 447 QGYLSKVHCVEVRTPMTKEFGLEYMDRSSKAARAGKAPALVMLAAANPNKMMCVRELVWQ 506
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
H G K ++ D++ LK Y +N P I G T ER+ I +F+ K+N I VS+V
Sbjct: 507 HLDAGAKILLCCDHIMLLKEYGELLNAPVICGSTQHKERLMIFSDFQSTSKINVICVSRV 566
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTME 444
D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K + A +A+FY+++S DT+E
Sbjct: 567 GDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPKERAANGRTVDAWFYSIISMDTVE 626
Query: 445 MSYSRKRQRFLINQGYSYKVI----------TKLAGMEEERGMH 478
M+Y+ R FL++QGY+ +V+ T L G++E+ H
Sbjct: 627 MNYAAHRTAFLVDQGYACRVMEYNPFASSVNTALGGVKEQVKKH 670
>gi|72387351|ref|XP_844100.1| DNA repair helicase and transcription factor protein [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62360608|gb|AAX81019.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei]
gi|70800632|gb|AAZ10541.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 938
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 175/264 (66%), Gaps = 14/264 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A F+ VL V+ C +GL+ATLLREDDKI DL L+GPKLYEANWL+L +
Sbjct: 514 LDEVHTALAHNFQEVLNKVKYKCVIGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRA 573
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT---------SKRLL--LYVMNPNKYRATQYLI 323
GF+ARV+CAE+ CP+ F EYL ++ + R+ + +NP K TQ L+
Sbjct: 574 GFLARVECAEIQCPLPKAFLTEYLESQSDGDPFARRGTTRMAHSVVCLNPYKLWCTQALL 633
Query: 324 AYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+H R DK I+F D + +++YA ++ P++ G TS ER +LQ F+ + +N I
Sbjct: 634 EFHRNRSPPDKVIIFCDQIDGIQYYAQHLHVPFMDGKTSDMERENLLQYFQHSDNINAII 693
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+S+V D + D+P A+V+IQIS G SRRQEAQRLGRILR K ++ + ++FYTLVSQD
Sbjct: 694 LSRVGDVALDIPCASVVIQISGLGASRRQEAQRLGRILRPKPASL-DNVCSYFYTLVSQD 752
Query: 442 TMEMSYSRKRQRFLINQGYSYKVI 465
T E+S S +RQ +L +QG+SY+V+
Sbjct: 753 THEISQSYERQSWLRDQGFSYRVL 776
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A TV+KR +V+C + +SV QW+ +F W+ + + ++ K P
Sbjct: 411 AGKTLTGIGAAATVKKRTIVMCINVMSVLQWQREFIRWTNLSEDQVTVCIADKKQMPG-- 468
Query: 98 GILVTTYSMISHTQKRSWEADQT---------MQWLQNQEWGIMLLDD 136
+ +TTYSM+ + E +Q+ + + Q WG++LLD+
Sbjct: 469 DVFITTYSMLIARRSNVPEMEQSADAKLTAKILASVGEQPWGLLLLDE 516
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
+ + P G IF+ P Y H DFL A EPVCR ++ E P+ +
Sbjct: 1 MILGPGGRIFINHGHPAYPHLMDFLTACCEPVCRTLYVSEYTISPSSL 48
>gi|115439313|ref|NP_001043936.1| Os01g0691600 [Oryza sativa Japonica Group]
gi|113533467|dbj|BAF05850.1| Os01g0691600 [Oryza sativa Japonica Group]
Length = 580
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 113/173 (65%), Positives = 140/173 (80%), Gaps = 2/173 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ +LY MNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
IVF+DN+FAL YA+K+ KP IYG TS ER +IL FK + VNTIF+SKV
Sbjct: 527 IIVFADNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKV 579
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A C ++K L L + VSV+QW QFKLWST D I RFTS+ K+K G
Sbjct: 310 AGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFRGM 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS ++++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDE 409
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +H
Sbjct: 46 EVKKRDF-TKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 104
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
E + P ++ V +++ + + + L
Sbjct: 105 EYNLTPHSLYAAVSVGLETSTIISVMSKL 133
>gi|261327256|emb|CBH10232.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei gambiense DAL972]
Length = 938
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 175/264 (66%), Gaps = 14/264 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A F+ VL V+ C +GL+ATLLREDDKI DL L+GPKLYEANWL+L +
Sbjct: 514 LDEVHTALAHNFQEVLNKVKFKCVIGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRA 573
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT---------SKRLL--LYVMNPNKYRATQYLI 323
GF+ARV+CAE+ CP+ F EYL ++ + R+ + +NP K TQ L+
Sbjct: 574 GFLARVECAEIQCPLPKAFLTEYLESQSDGDPFARRGTTRMAHSVVCLNPYKLWCTQALL 633
Query: 324 AYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+H R DK I+F D + +++YA ++ P++ G TS ER +LQ F+ + +N I
Sbjct: 634 EFHRNRSPPDKVIIFCDQIDGIQYYAQHLHVPFMDGKTSDMERENLLQYFQHSDNINAII 693
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+S+V D + D+P A+V+IQIS G SRRQEAQRLGRILR K ++ + ++FYTLVSQD
Sbjct: 694 LSRVGDVALDIPCASVVIQISGLGASRRQEAQRLGRILRPKPASL-DNVCSYFYTLVSQD 752
Query: 442 TMEMSYSRKRQRFLINQGYSYKVI 465
T E+S S +RQ +L +QG+SY+V+
Sbjct: 753 THEISQSYERQSWLRDQGFSYRVL 776
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A TV+KR +V+C + +SV QW+ +F W+ + + ++ K P
Sbjct: 411 AGKTLTGIGAAATVKKRTIVMCINVMSVLQWQREFIRWTNLSEDQVTVCIADKKQMPG-- 468
Query: 98 GILVTTYSMISHTQKRSWEADQT---------MQWLQNQEWGIMLLDD 136
+ +TTYSM+ + E +Q+ + + Q WG++LLD+
Sbjct: 469 DVFITTYSMLIARRSNVPEMEQSADAKLTAKILASVGEQPWGLLLLDE 516
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
+ + P G IF+ P Y H DFL A EPVCR ++ E P+ +
Sbjct: 1 MILGPGGRIFINHGHPAYPHLMDFLTACCEPVCRTLYVSEYTISPSSL 48
>gi|342186621|emb|CCC96108.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 779
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 227/448 (50%), Gaps = 66/448 (14%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWST---------ADDSMICRFTS 88
AGK+LVGV C V+K L+LC G+SVEQW++Q +++ S C +
Sbjct: 229 AGKTLVGVMLLCKVKKPTLILCTGGISVEQWRNQILEFASLSAPSGGEEGSSSTACATSK 288
Query: 89 EAKDKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEK 148
A+ +G + S ++ QK D I+L + V A K +
Sbjct: 289 RARPPAVGAARI----SCLTGKQKDEITDDT----------DIVLTTYNMLVTAHKMQRR 334
Query: 149 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 208
+ G + + + +P+ K R P G + ++
Sbjct: 335 QQCSSAGGATGEQRAKTR---RPNPKER--LFQPYGLLIMD------------------- 370
Query: 209 VCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANW 268
EVH +PA +++ L V S +GLTAT +RED KI DL +L+GPKL++ +W
Sbjct: 371 --------EVHVMPADVYKESLGYVNSKGVIGLTATYVREDAKIRDLFYLVGPKLFDMSW 422
Query: 269 LELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTS------KRLLLYVM----NPNKYRA 318
L G++A V C EV P++ +F EY+ S +++ L VM NPNK
Sbjct: 423 ERLASSGYLANVTCVEVLTPLTRQFNLEYMERSGSGFTVQRRKVPLLVMLAAANPNKMLC 482
Query: 319 TQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVN 378
L+ H K +VF D++ L Y + P I G T ER+ I +F+ KVN
Sbjct: 483 VAELVQRHIVESSKILVFCDHIVLLMEYGKFLGAPVICGDTPHRERLMIFSDFQSTSKVN 542
Query: 379 TIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTL 437
I +S+V D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K K + +A+FY++
Sbjct: 543 VICLSRVGDVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKAKAGNGKAVDAWFYSV 602
Query: 438 VSQDTMEMSYSRKRQRFLINQGYSYKVI 465
+S DT+EMS++ +R FL++QGY+ +V+
Sbjct: 603 ISTDTVEMSFAARRTAFLVDQGYTCRVM 630
>gi|71415150|ref|XP_809651.1| DNA repair helicase [Trypanosoma cruzi strain CL Brener]
gi|70874067|gb|EAN87800.1| DNA repair helicase, putative [Trypanosoma cruzi]
Length = 778
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 155/440 (35%), Positives = 231/440 (52%), Gaps = 56/440 (12%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+ C V+K L+LC VSVEQWK+Q +++ IC A D
Sbjct: 229 AGKTLVGIMLLCKVKKPTLILCAGSVSVEQWKNQILEFAS-----IC-----AHD----- 273
Query: 98 GILVTTYSMISHTQKRS-WEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPED 156
T M + + RS E + L ++ PV E+ D +
Sbjct: 274 ----TDDEMAAAEKHRSRLEGAARIACLTGKQKD--------PVT-----EETDIVLTTY 316
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
+RAQM + H S +A + H +P + + + I +
Sbjct: 317 SMLVTAHRAQMRQRAAHAS---GLADDRHQKRRRANPKEKLFQPYGLLIMD--------- 364
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA+ ++ L++V + +GLTAT +RED KI DL L+GPKLY+ +W L G+
Sbjct: 365 EVHVMPAEAYKESLSLVDAKGVVGLTATYVREDAKIQDLFHLVGPKLYDVSWETLASSGY 424
Query: 277 IARVQCAEVWCPMSPEFYREYLV------CKTSKRLLLYVM----NPNKYRATQYLIAYH 326
+A V C EV P++ +F EY+ +++ L VM NPNK L+ H
Sbjct: 425 LANVTCIEVLTPLTRQFSLEYMQRSGEDHTLQQRKMPLLVMLAAANPNKMLCVLELVRRH 484
Query: 327 ERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386
K +VF D++ L+ Y ++ P I G T ER+ I +F+ K+N I +S+V
Sbjct: 485 VADSSKILVFCDHLLLLREYGTLLHAPVICGQTPHRERLMIFSDFQSTSKLNVICLSRVG 544
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTMEM 445
D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K + + + +A+FYT++S DT+EM
Sbjct: 545 DVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKARASNGKMVDAWFYTIISTDTLEM 604
Query: 446 SYSRKRQRFLINQGYSYKVI 465
+Y+ R FL++QGY+ ++I
Sbjct: 605 AYAAHRTAFLVDQGYTCRII 624
>gi|342180398|emb|CCC89875.1| putative DNA repair helicase and transcription factor protein
[Trypanosoma congolense IL3000]
Length = 937
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/266 (47%), Positives = 171/266 (64%), Gaps = 18/266 (6%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A FR VL V+ C +GL+ATLLREDDKI DL L+GPKLYEANWL+L +
Sbjct: 519 LDEVHTALAHNFREVLNKVKFKCVVGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRA 578
Query: 275 GFIARVQCAEVWCPMSPEFYREYL-------------VCKTSKRLLLYVMNPNKYRATQY 321
GF+ARV+CAEV CP+ F YL ++ ++ Y NP K Q
Sbjct: 579 GFLARVECAEVQCPLPRPFLVAYLDNQKQGDLSTRRGTSPMARAVVCY--NPYKLWCAQA 636
Query: 322 LIAYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNT 379
L+ +H R DK I+F D + +++YA +N P++ G TS +ER +LQ F+ + +N
Sbjct: 637 LLEFHRNRSPPDKVIIFCDQIDGVQYYAQHLNVPFMDGRTSDAERANLLQYFQHSSDINA 696
Query: 380 IFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS 439
I +S+V D + D+P A+V+IQIS G SRRQEAQRLGRILR K ++ + +FFYTLVS
Sbjct: 697 IILSRVGDVALDIPCASVVIQISGLGASRRQEAQRLGRILRPKPPSL-DNSCSFFYTLVS 755
Query: 440 QDTMEMSYSRKRQRFLINQGYSYKVI 465
QDT E+S S RQ +L +QG+SY+V+
Sbjct: 756 QDTHEISQSYSRQSWLRDQGFSYRVL 781
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A TV+KR +V+C + +SV QW+ +F W+ + + S+ K P
Sbjct: 416 AGKTLTGIGAAATVKKRTIVMCINVMSVLQWQREFLRWTNLTEEQVTVCISDKKQMPG-- 473
Query: 98 GILVTTYSMI------SHTQKRSWEADQTMQWLQN---QEWGIMLLDD 136
+ +TTYSM+ Q++S +A T + L + Q WG++LLD+
Sbjct: 474 DVFITTYSMLIAKRPNVSDQEQSADAKLTSKILASVSEQPWGLLLLDE 521
>gi|71650415|ref|XP_813906.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi strain CL Brener]
gi|70878833|gb|EAN92055.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma cruzi]
Length = 925
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 173/264 (65%), Gaps = 14/264 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH A F+ VL V+ C +GL+ATLLREDDKI DL L+GPKLYEANWLEL +
Sbjct: 506 LDEVHAALAHHFQEVLNKVKYKCVVGLSATLLREDDKIGDLRHLVGPKLYEANWLELTRA 565
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK-----------TSKRLLLYVMNPNKYRATQYLI 323
GF+ARV+CAEV CP+ F+REYL + +S + NP K TQ L+
Sbjct: 566 GFLARVECAEVQCPLPLPFFREYLDSQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALL 625
Query: 324 AYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+H R DK I+F D++ +++YA +N P++ G T++ ER +LQ F+ + +N I
Sbjct: 626 EFHRNRSPPDKVIIFCDDLEGVQYYARHLNVPFMDGKTTEVERENLLQYFQHSNDINAII 685
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+S+V D + D+P A+V+IQ+S G SRRQEAQRLGRILR K ++ + ++FYTLVSQD
Sbjct: 686 LSRVGDVALDIPCASVIIQVSGLGASRRQEAQRLGRILRPKPPSL-DNTCSYFYTLVSQD 744
Query: 442 TMEMSYSRKRQRFLINQGYSYKVI 465
T E+ S RQ +L +QG++Y+V+
Sbjct: 745 THEVQQSYGRQSWLRDQGFAYRVL 768
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A ++KR +V+C + +SV QW+ +F W+ + + S+ K P
Sbjct: 403 AGKTLTGIGAATILKKRTIVMCINVISVLQWQREFFRWTDLSEDQVTVCISDKKQMPG-- 460
Query: 98 GILVTTYSMISHTQKRSWEADQ---------TMQWLQNQEWGIMLLDD 136
+ +TTYSM+ + + E +Q + ++ Q WG++LLD+
Sbjct: 461 DVFITTYSMLVAKRPTAPEQEQGEDARLTSRILASVEEQAWGLLLLDE 508
>gi|71417712|ref|XP_810636.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi strain CL Brener]
gi|70875197|gb|EAN88785.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma cruzi]
Length = 925
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 173/264 (65%), Gaps = 14/264 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH A F+ VL V+ C +GL+ATLLREDDKI DL L+GPKLYEANWLEL +
Sbjct: 506 LDEVHAALAHHFQEVLNKVKYKCVVGLSATLLREDDKIGDLRHLVGPKLYEANWLELTRA 565
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK-----------TSKRLLLYVMNPNKYRATQYLI 323
GF+ARV+CAEV CP+ F+REYL + +S + NP K TQ L+
Sbjct: 566 GFLARVECAEVQCPLPLPFFREYLDSQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALL 625
Query: 324 AYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+H R DK I+F D++ +++YA +N P++ G T++ ER +LQ F+ + +N I
Sbjct: 626 EFHRNRSPPDKVIIFCDDLEGVQYYARHLNVPFMDGKTTEVERENLLQYFQHSNDINAII 685
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+S+V D + D+P A+V+IQ+S G SRRQEAQRLGRILR K ++ + ++FYTLVSQD
Sbjct: 686 LSRVGDVALDIPCASVIIQVSGLGASRRQEAQRLGRILRPKPPSL-DNTCSYFYTLVSQD 744
Query: 442 TMEMSYSRKRQRFLINQGYSYKVI 465
T E+ S RQ +L +QG++Y+V+
Sbjct: 745 THEVQQSYGRQSWLRDQGFAYRVL 768
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A ++KR +V+C + +SV QW+ +F W+ + + S+ K P
Sbjct: 403 AGKTLTGIGAATILKKRTIVMCINVISVLQWQREFFRWTDLSEDQVTVCISDKKQMPG-- 460
Query: 98 GILVTTYSMISHTQKRSWEADQ---------TMQWLQNQEWGIMLLDD 136
+ +TTYSM+ + + E +Q + ++ Q WG++LLD+
Sbjct: 461 DVFITTYSMLVAKRPTAPEQEQGEDARLTSRILASVEEQAWGLLLLDE 508
>gi|407410785|gb|EKF33098.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi marinkellei]
Length = 737
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 177/274 (64%), Gaps = 14/274 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH A F+ VL V+ C +GL+ATLLREDDKI DL L+GPKLYEANWLEL +
Sbjct: 318 LDEVHAALAHHFQEVLNKVKYKCVVGLSATLLREDDKIGDLRHLVGPKLYEANWLELTRA 377
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK-----------TSKRLLLYVMNPNKYRATQYLI 323
GF+ARV+CAEV CP+ F+ EYL + +S + NP K TQ L+
Sbjct: 378 GFLARVECAEVQCPLPLSFFTEYLDSQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALL 437
Query: 324 AYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+H R DK I+F D++ +++YA +N P++ G T++ ER +LQ F+ + +N I
Sbjct: 438 EFHRNRSPPDKVIIFCDDLDGVQYYARHLNVPFMDGKTTEFERENLLQYFQHSSDINAII 497
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+S+V D + D+P A+V+IQIS G SRRQEAQRLGRILR K ++ + ++FYTLVSQD
Sbjct: 498 LSRVGDVALDIPCASVIIQISGLGASRRQEAQRLGRILRPKPPSL-DNTCSYFYTLVSQD 556
Query: 442 TMEMSYSRKRQRFLINQGYSYKVITKLAGMEEER 475
T E+ S RQ +L +QG++Y+V+ + ++E R
Sbjct: 557 THEVPQSHGRQSWLRDQGFAYRVLQCDSLLKELR 590
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A ++KR +V+C + +SV QW+ +F W+ + + S+ K P
Sbjct: 215 AGKTLTGIGAATILKKRTIVMCINVLSVLQWQREFFRWTDLSEDQVTVCISDKKQMPG-- 272
Query: 98 GILVTTYSMISHTQKRSWEADQT---------MQWLQNQEWGIMLLDD 136
+ +TTY+M+ + + E +Q+ + ++ Q WG++LLD+
Sbjct: 273 DVFITTYNMLVAKRPTAPEQEQSEDARLTSRILASVEEQAWGLLLLDE 320
>gi|407832348|gb|EKF98418.1| DNA repair helicase [Trypanosoma cruzi]
Length = 925
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 172/264 (65%), Gaps = 14/264 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH A F+ VL V+ C +GL+ATLLREDDKI DL L+GPKLYEANWLEL +
Sbjct: 506 LDEVHAALAHHFQEVLNKVKYKCVVGLSATLLREDDKIGDLRHLVGPKLYEANWLELTRA 565
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK-----------TSKRLLLYVMNPNKYRATQYLI 323
GF+ARV+CAEV CP+ F+ EYL + +S + NP K TQ L+
Sbjct: 566 GFLARVECAEVQCPLPLPFFTEYLDSQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALL 625
Query: 324 AYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+H R DK I+F D++ +++YA +N P++ G T++ ER +LQ F+ + +N I
Sbjct: 626 EFHRNRSPPDKVIIFCDDLEGVQYYARHLNVPFMDGKTTEVERENLLQYFQHSNDINAII 685
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
+S+V D + D+P A+V+IQ+S G SRRQEAQRLGRILR K ++ + ++FYTLVSQD
Sbjct: 686 LSRVGDVALDVPCASVIIQVSGLGASRRQEAQRLGRILRPKPPSL-DNTCSYFYTLVSQD 744
Query: 442 TMEMSYSRKRQRFLINQGYSYKVI 465
T E+ S RQ +L +QG++Y+V+
Sbjct: 745 THEVQQSYGRQSWLRDQGFAYRVL 768
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A ++KR +V+C + +SV QW+ +F W+ + + S+ K P
Sbjct: 403 AGKTLTGIGAATILKKRTIVMCINVISVLQWQREFFRWTDLSEDQVTVCISDKKQMPG-- 460
Query: 98 GILVTTYSMISHTQKRSWEADQ---------TMQWLQNQEWGIMLLDD 136
+ +TTYSM+ + + E +Q + ++ Q WG++LLD+
Sbjct: 461 DVFITTYSMLVAKRPTAPEQEQGEDARLTSRILASVEEQAWGLLLLDE 508
>gi|340506420|gb|EGR32554.1| hypothetical protein IMG5_077910 [Ichthyophthirius multifiliis]
Length = 736
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/299 (43%), Positives = 183/299 (61%), Gaps = 14/299 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
I EVH +PA F+ VL + H KLGLTAT RED+KI++L ++IGPKLYE NW +L K+
Sbjct: 396 IDEVHKLPANTFQNVLKQYKFHFKLGLTATPYREDEKISNLFYMIGPKLYEENWHDLVKQ 455
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT----------SKRLLLYVMNPNKYRATQYLIA 324
GF+A C E+ C M+ E++++ K ++R LL+ NPNK+ ++LI
Sbjct: 456 GFLASPYCVEIRCNMA-EYWKQQYDRKNDISQKRYFIGAQRELLHTSNPNKFNVLEFLIK 514
Query: 325 YHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384
HE RGDK +VF D L++Y+ + P + G Q ER I FK ++NTIF+S+
Sbjct: 515 IHEDRGDKILVFCDRPVVLEYYSKILKYPIVSGNVQQDERKTIYNLFKNTNQINTIFLSR 574
Query: 385 VADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444
V DT+ DLP ANV IQI H SRRQE QRLGRI+RA KG +YNAF+YTLVS+ T E
Sbjct: 575 VGDTAIDLPSANVGIQIGIHFKSRRQEVQRLGRIMRA-KGNYDGQYNAFWYTLVSKCTDE 633
Query: 445 MSYSRKRQRFLINQGYSYKVI--TKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD 501
++Y RQ+ LINQG+ Y+V+ + L ++ + + + + L +L + E D
Sbjct: 634 VNYCLSRQKCLINQGFKYEVLDESDLPFRKQPQKFKWMNKINEQDYLYDILMSQEDKID 692
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
+D++ DY + + LK D+++RPL+++P+G+IFLE+FSP+YR A+ FLI+IAEP+ RP
Sbjct: 4 DDDYDFHDY-SYIKLKQDYENRPLFLSPDGYIFLETFSPLYRTAYQFLISIAEPIQRPLT 62
Query: 215 IH 216
+H
Sbjct: 63 VH 64
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 17/125 (13%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFT--------SE 89
AGK++VGV A +++ +V+C+S VSV+QW+ + + W+T + I RFT +
Sbjct: 291 AGKTIVGVIAIERIKQSTIVICDSDVSVDQWRDELERWTTISRNKIVRFTGRITDEWITR 350
Query: 90 AKDKPMGCGILVTTYSMIS----HTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAK 143
D P+ IL+TTY M+S Q ++ + Q +Q +Q ++WG+ ++D+ +P
Sbjct: 351 ETDDPI---ILLTTYYMLSKKREKNQSQTSKKQQYIQTIQEKQWGVCIIDEVHKLPANTF 407
Query: 144 KNVEK 148
+NV K
Sbjct: 408 QNVLK 412
>gi|407034427|gb|EKE37204.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 651
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 165/252 (65%), Gaps = 8/252 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH + + +++ CKLGLTATL+REDD+I DL F+IGP LYEA+W EL K+G+
Sbjct: 356 EVHGSTTDNIEKFVCKIKAQCKLGLTATLIREDDRIRDLEFMIGPMLYEASWQELAKQGY 415
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA +C EV CPM+ +Y Y+ SK + L +NPNK A +YL+ H+ GDK I+
Sbjct: 416 IANAKCFEVICPMTKTYYSAYVEADDSKLKQCLAQLNPNKIDACKYLLEQHKAHGDKIII 475
Query: 336 FSDNVFALKHY--AVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
F + + Y +K+ K Y+ G TS+ R +L F+ + +++ IF SK+ D DLP
Sbjct: 476 FCNELKPAGFYKEKLKLQKCYMDGNTSEEHRRNLLDQFRRD-EISVIFCSKIGDVGLDLP 534
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V IQ+SS GSRRQEAQRLGRILRAK G +A+FYTL S+DT EM +S++RQR
Sbjct: 535 DASVAIQLSSSSGSRRQEAQRLGRILRAKDGT----NSAYFYTLTSKDTREMYFSQRRQR 590
Query: 454 FLINQGYSYKVI 465
+ GY++KVI
Sbjct: 591 VMRQNGYTFKVI 602
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L + AC +++ +VL ++ SV QWK +F WST I + +K + +G
Sbjct: 257 AGKTLTAIAACSKIKRSTIVLTHTTQSVFQWKEEFLKWSTIKPDAI-KLCVSSKKEQLGD 315
Query: 97 -CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEK 148
+L+T+YSM+SHT +R + + + L +EWG ++ D+ V + N+EK
Sbjct: 316 DACVLITSYSMLSHTGEREYAGQRIIDDLLKREWGFIIFDE-VHGSTTDNIEK 367
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
ED + DY M LKP+H P+WV+ N I +E+ + +++ D+L +A+ R EH
Sbjct: 17 EDMKESTDY--DMRLKPNHSELPMWVSSNLRIVVETSNDMFKEVSDYLSRVAQVKSRMEH 74
Query: 215 IHEVHTIPAKMF 226
+HE P +
Sbjct: 75 MHEYQLTPTSIM 86
>gi|67467062|ref|XP_649651.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466136|gb|EAL44265.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449709415|gb|EMD48686.1| rad25/xpB DNA repair helicase, putative [Entamoeba histolytica
KU27]
Length = 648
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 165/252 (65%), Gaps = 8/252 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH + + +++ CKLGLTATL+REDD+I DL F+IGP LYEA+W EL K+G+
Sbjct: 356 EVHGSTTDNIEKFVCKIKAQCKLGLTATLIREDDRIRDLEFMIGPMLYEASWQELAKQGY 415
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA +C EV CPM+ +Y Y+ SK + L +NPNK A +YL+ H+ GDK I+
Sbjct: 416 IANAKCFEVICPMTKTYYSAYVEADDSKLKQCLAQLNPNKIDACKYLLEQHKAHGDKIII 475
Query: 336 FSDNVFALKHY--AVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
F + + Y +K+ K Y+ G TS+ R +L F+ + +++ IF SK+ D DLP
Sbjct: 476 FCNELKPAGFYKEKLKLQKCYMDGNTSEEHRRNLLDQFRRD-EISVIFCSKIGDVGLDLP 534
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V IQ+SS GSRRQEAQRLGRILRAK G +A+FYTL S+DT EM +S++RQR
Sbjct: 535 DASVAIQLSSSSGSRRQEAQRLGRILRAKDGT----NSAYFYTLTSKDTREMYFSQRRQR 590
Query: 454 FLINQGYSYKVI 465
+ GY++KVI
Sbjct: 591 VMRQNGYTFKVI 602
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L + AC +++ +VL ++ SV QWK +F WST I + +K + +G
Sbjct: 257 AGKTLTAIAACSKIKRSTIVLTHTTQSVFQWKEEFLKWSTIKPDAI-KLCVSSKKEQLGD 315
Query: 97 -CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEK 148
+L+T+YSM+SHT +R + + + L +EWG ++ D+ V + N+EK
Sbjct: 316 DACVLITSYSMLSHTGEREYAGQRIIDDLLKREWGFIIFDE-VHGSTTDNIEK 367
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
ED + DY M LKP+H P+WV+ N I +E+ + +++ D+L +A+ R EH
Sbjct: 17 EDMKESTDY--DMRLKPNHPELPMWVSSNLRIVVETSNDMFKEVSDYLSRVAQVKSRMEH 74
Query: 215 IHEVHTIPAKMF 226
+HE P +
Sbjct: 75 MHEYQLTPTSIM 86
>gi|167392006|ref|XP_001739987.1| rad25/xp-B DNA repair helicase [Entamoeba dispar SAW760]
gi|165896120|gb|EDR23627.1| rad25/xp-B DNA repair helicase, putative [Entamoeba dispar SAW760]
Length = 651
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 165/252 (65%), Gaps = 8/252 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH + + +++ CKLGLTATL+REDD+I DL F+IGP LYEA+W EL K+G+
Sbjct: 356 EVHGSTTDNIEKFVCKIKAQCKLGLTATLIREDDRIRDLEFMIGPMLYEASWQELAKQGY 415
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA +C EV CPM+ +Y Y+ SK + L +NPNK A +YL+ H+ GDK I+
Sbjct: 416 IANAKCFEVICPMTKTYYSAYVEADDSKLKQCLAQLNPNKIDACKYLLEQHKAHGDKIII 475
Query: 336 FSDNVFALKHY--AVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
F + + Y +K+ K Y+ G TS+ R +L F+ + +++ IF SK+ D DLP
Sbjct: 476 FCNELKPAGFYKEKLKLQKCYMDGNTSEEHRRNLLDQFRRD-EISVIFCSKIGDVGLDLP 534
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V IQ+SS GSRRQEAQRLGRILRAK G +A+FYTL S+DT EM +S++RQR
Sbjct: 535 DASVAIQLSSSSGSRRQEAQRLGRILRAKDGT----NSAYFYTLTSKDTREMYFSQRRQR 590
Query: 454 FLINQGYSYKVI 465
+ GY++KVI
Sbjct: 591 VMRQNGYTFKVI 602
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L + AC +++ +VL ++ SV QWK +F WST I + +K + +G
Sbjct: 257 AGKTLTAIAACSKIKRSTIVLTHTTQSVFQWKEEFLKWSTIKPDAI-KLCVSSKKEQLGD 315
Query: 97 -CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEK 148
+L+T+YSM+SHT +R + + + L +EWG ++ D+ V + N+EK
Sbjct: 316 DACVLITSYSMLSHTGEREYAGQRIIDDLLKREWGFIIFDE-VHGSTTDNIEK 367
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LKP+H P+WV+ N I +E+ + +++ D+L +A+ R EH+HE P +
Sbjct: 27 MRLKPNHPELPMWVSSNLRIVVETSNDMFKEVSDYLSRVAQVKSRMEHMHEYQLTPTSIM 86
>gi|449683205|ref|XP_004210294.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like, partial [Hydra magnipapillata]
Length = 170
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 136/170 (80%), Gaps = 4/170 (2%)
Query: 385 VADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444
V DTSFD+PEANVLIQISSHGGSRRQEAQRLGRILRAKK AEEYNAFFY+LVS DT E
Sbjct: 1 VGDTSFDMPEANVLIQISSHGGSRRQEAQRLGRILRAKKDMAAEEYNAFFYSLVSTDTEE 60
Query: 445 MSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEER 504
M +S KRQRFLINQGYSYKVITKLAGM+EE + YS + E +LLQ+VLAA++TDA+EE+
Sbjct: 61 MFFSNKRQRFLINQGYSYKVITKLAGMDEE-SLSYSNKKEHHELLQKVLAATDTDAEEEK 119
Query: 505 VAGEVGGVSGGFK--RSGGTMASLSGADDAVYHE-SRFSNVKHPLFKKFR 551
+ G+ SG R G+MAS+SGADD VY E S + +HPLFK+FR
Sbjct: 120 IPGDSANKSGNLSVVRRQGSMASMSGADDMVYSEYSGKTKSRHPLFKRFR 169
>gi|384500729|gb|EIE91220.1| hypothetical protein RO3G_15931 [Rhizopus delemar RA 99-880]
Length = 619
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 181/301 (60%), Gaps = 34/301 (11%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA F + ++ +++ +LGLTAT+LRED+KI DL+ L+GP LY A W EL +
Sbjct: 214 LDEVHCVPANNFSKAISKIKTKVRLGLTATMLREDEKIGDLDTLVGPTLYHAKWKELADK 273
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRL--------LLYVMNPNKYRATQYLIAYH 326
G+IA+V C +V M+P Y +T L LL +++P K + Q LI YH
Sbjct: 274 GYIAKVVCTQVESDMNPITQGAYDSVQTGNLLGQGHHLKSLLAILHPKKIQICQRLIQYH 333
Query: 327 ERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLN------------ 374
E RGDK +V+ D++ ALK YA + +P IYG T E Q+L F+++
Sbjct: 334 EARGDKVLVYCDHIDALKLYAQHIGRPLIYGGTPTEEARQLLARFQIDVQDTDEELTWNQ 393
Query: 375 ---------PKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425
++NT+F+S++ DTS DLP A VLIQ+SSH GSRRQEAQRLGR+LRAKK
Sbjct: 394 MATRRSLKAKQINTLFLSRIGDTSLDLPAATVLIQVSSHFGSRRQEAQRLGRVLRAKKRN 453
Query: 426 IAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQ-GYSYKVITKLAGMEEERGMHYST-RD 483
+ + + FYTLV+ +T E+ +S KR++FL GY Y++ G E+E G T RD
Sbjct: 454 -EKGFYSRFYTLVTNNTHEVQFSEKRRQFLEEDCGYGYQIWK--VGNEKEGGWEVETHRD 510
Query: 484 E 484
+
Sbjct: 511 D 511
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+L + ++K LV+C++ ++ EQ+ +F ++ S F AK P
Sbjct: 117 AGKTLTSILVAAAIKKPILVVCSTIIAAEQFSKEFLRFTNLMASKTGMFAG-AKKWPFNG 175
Query: 97 -CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L TTY+M+ ++ R+ ++ + ++ EWG+++LD+
Sbjct: 176 PSGVLFTTYTMLVDSKNRTADSKRMSTFIDKTEWGLVILDE 216
>gi|167386165|ref|XP_001733392.1| rad25/xp-B DNA repair helicase [Entamoeba dispar SAW760]
gi|165899480|gb|EDR26066.1| rad25/xp-B DNA repair helicase, putative [Entamoeba dispar SAW760]
Length = 624
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 183/285 (64%), Gaps = 15/285 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH+ AK FR++ ++++ CK+G+TAT +RED KI DL++LIGP LY+ NW +L K
Sbjct: 336 LDEVHSSVAKEFRKIYYLIETRCKIGITATPIREDYKIKDLDYLIGPILYQENWKDLIKE 395
Query: 275 GFIARVQCAEVWCPMSPEFYREYL-VCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
+IA+VQC E+ CPM+ FY EY+ K +++L +NPNK ++LI H +R ++
Sbjct: 396 KYIAKVQCIEIKCPMTIPFYEEYINNSKYRHKIILTALNPNKIEVIKFLIKEHLKRKEQI 455
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
I+F D++ LK + ++N P +G + ERI IL FKL ++N I +S V DTS D+P
Sbjct: 456 IIFCDSIIVLKEISYQINCPIFFGESPNKERIDILNKFKL-KEINYIGMSSVGDTSIDIP 514
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V+IQIS++ GSR+Q+ QRLGRI R KK E +FYTL S DT E + KRQ
Sbjct: 515 DASVIIQISTNNGSRKQQLQRLGRISRIKKN----EGIGYFYTLTSIDTHEEYFIYKRQI 570
Query: 454 FLINQGYSYK-VITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE 497
++ N G+ ++ +I+KL M+ +EQ L++ +L S+
Sbjct: 571 YMENLGFEFENIISKLIT-----NMNI---NEQLNLIKYILNESD 607
>gi|353442071|gb|AER00321.1| xeroderma pigmentosum group B, partial [Hydra vulgaris]
Length = 227
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/130 (78%), Positives = 114/130 (87%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAK FRRVLTIV +HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 98 LDEVHTIPAKQFRRVLTIVNAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWMELQNN 157
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G++ARVQCAEVWCPMSPEFYREYL + KR L YVMNPNK+RA ++LI +HERR DK I
Sbjct: 158 GYLARVQCAEVWCPMSPEFYREYLSIPSRKRSLFYVMNPNKFRACEFLIRFHERRNDKII 217
Query: 335 VFSDNVFALK 344
VF+DNVFALK
Sbjct: 218 VFADNVFALK 227
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 85/107 (79%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTVRK+ LVLC SGVSVEQWK QFKLW+ DD ICRFTS+ KDKP+ C
Sbjct: 2 AGKTLVGVTAACTVRKKCLVLCTSGVSVEQWKSQFKLWANIDDKHICRFTSDTKDKPVDC 61
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
+ VTTYSMI+HT KRS+E+ M +L+N EWG+MLLD+ + AK+
Sbjct: 62 HLAVTTYSMIAHTMKRSYESTLIMDFLKNTEWGLMLLDEVHTIPAKQ 108
>gi|145525669|ref|XP_001448651.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416206|emb|CAK81254.1| unnamed protein product [Paramecium tetraurelia]
Length = 708
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 189/313 (60%), Gaps = 7/313 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA F+ VL ++ K+GLTATLLRED K+ +L F+IGPKLYE N ++L +
Sbjct: 391 VDEVHRLPAVQFQNVLKQIKCAIKIGLTATLLREDQKLDNLYFMIGPKLYEENLIDLMTQ 450
Query: 275 GFIARVQCAEVWCPMSPEFYREYLV-CKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A+ E+ C M P F +EY + R LL+ NP KY+A Q+LI HE G K
Sbjct: 451 GFLAKPHIIEIQCDMPPIFLQEYQTKNNMTVRQLLHTGNPGKYKALQFLIKNHEMLGHKI 510
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVF D++ L +YA+ + P I G + E+ +I FK + ++ TIFVS+V DT D+P
Sbjct: 511 IVFCDSLLILNYYALLLGYPVIDGDLNTDEKNKIFSIFKNSNEIKTIFVSRVGDTGIDIP 570
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A+V I+I GGSRRQ+ QRLGR++R K+ E AFFY+L S+DT E YS KRQ+
Sbjct: 571 SASVGIEIGYLGGSRRQKVQRLGRVMRPKQNT-NHEIQAFFYSLASKDTTESEYSYKRQK 629
Query: 454 FLINQ-GYSYKVITK--LAGMEEERGMHYSTRDEQGQLLQQVLAASE--TDADEERVAGE 508
++ Q G + ++I + L + + Y + + LL+Q++ +S T+ +++ E
Sbjct: 630 YITEQLGLNTELILEGDLPYNKNPQKYKYIKQMNEMDLLEQIMLSSNDLTNKVIDQIEEE 689
Query: 509 VGGVSGGFKRSGG 521
V V+ F + G
Sbjct: 690 VQVVTNTFSQEFG 702
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGV ++ +++C+S VSVEQWK + + ++T D+ I R T AKDK G
Sbjct: 292 AGKTLVGVLCMSLIKSSTVIICDSNVSVEQWKREIEGYTTIDNRRIIRVTGFAKDKWQGE 351
Query: 98 G--ILVTTYS-MISHTQKRSWEADQTMQWLQNQEWGIMLLDDG--VPVAAKKNVEK 148
+++TTYS +I+ + S + WGI ++D+ +P +NV K
Sbjct: 352 QPIVILTTYSWLIAQFRNNSSSTKTVWNQISEVSWGICIVDEVHRLPAVQFQNVLK 407
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTI 221
DYR +++ + +PL ++P+ I +E F+P+Y A +FL+ +AEP+ R E IHE
Sbjct: 27 DYRNIEIVQSN---KPLILSPDLGIIVEKFNPLYEIAFEFLMCVAEPISRSELIHEYVLT 83
Query: 222 PAKMF 226
M+
Sbjct: 84 QMSMY 88
>gi|407044253|gb|EKE42473.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 589
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 177/284 (62%), Gaps = 13/284 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH+ AK FR++ ++++ C++G+TAT +RED KI DL++LIGP LY+ +W EL K
Sbjct: 302 LDEVHSSVAKEFRKIYYLIEARCRIGITATPIREDFKIKDLDYLIGPILYQESWKELIKE 361
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKT 333
+IA VQC ++ CPM+ FY EY+ + +++L +NPNK T++LI H +R ++
Sbjct: 362 KYIANVQCIDIKCPMTIPFYEEYINNSNYRHKIILSALNPNKIEVTKFLIKQHLKRNEQI 421
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
I+F D++ LK ++N P +G + ER+ IL FKL +N I +S V DTS D+P
Sbjct: 422 ILFCDSIIVLKEIGYQINCPIFFGESPNKERLDILNKFKLK-DINCIGMSSVGDTSLDIP 480
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V+IQIS++ GSR+Q+ QRLGRI R KK E +FYTL S DT E + KRQ
Sbjct: 481 DASVIIQISTNNGSRKQQLQRLGRISRIKKN----EGIGYFYTLTSIDTHEEYFIHKRQI 536
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE 497
++ N G+ ++ I + + +EQ L++ +L S+
Sbjct: 537 YMQNLGFGFECINSTI-------LTHMNTNEQLNLIKYILNESD 573
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+ + CT ++ +++C + +S+EQW+ + + WST + I F+S K+
Sbjct: 215 AGKTLMTIGIICTFQQPTIIICTTTISIEQWRDEIRKWSTIPLNKIKCFSSIIKETIEES 274
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I++TTY MI + ++ ++ +++G+M+LD+ AK+
Sbjct: 275 YIVITTYQMIQSKE---------IEEIRKKKYGMMILDEVHSSVAKE 312
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 143 KKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFL 202
K +E DD+ DEF + Q++ + S P W+ PNG I +E + Y+ A +F+
Sbjct: 2 KSTIENDDS----DEF-----KLQII----NTSNPYWICPNGLIIIERDNKNYQIASEFI 48
Query: 203 IAIAEPVCRPEHIHE 217
I++ C EH+ E
Sbjct: 49 KKISKVKCLLEHMEE 63
>gi|67479133|ref|XP_654948.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472042|gb|EAL49560.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703271|gb|EMD43753.1| rad25/xpB DNA repair helicase, putative [Entamoeba histolytica
KU27]
Length = 589
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 177/284 (62%), Gaps = 13/284 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH+ AK FR++ ++++ C++G+TAT +RED KI DL++LIGP LY+ +W EL K
Sbjct: 302 LDEVHSSVAKEFRKIYYLIEARCRIGITATPIREDCKIKDLDYLIGPILYQESWKELIKE 361
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKT 333
+IA VQC ++ CPM+ FY EY+ + +++L +NPNK T++LI H +R ++
Sbjct: 362 KYIANVQCIDIKCPMTIPFYEEYINNSNYRHKIILSALNPNKIEVTKFLIKQHLKRNEQI 421
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
I+F D++ LK ++N P +G + ER+ IL FKL +N I +S V DTS D+P
Sbjct: 422 ILFCDSIIVLKEIGYQINCPIFFGESPNKERLDILNKFKLK-DINCIGMSSVGDTSLDIP 480
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V+IQIS++ GSR+Q+ QRLGRI R KK E +FYTL S DT E + K+Q
Sbjct: 481 DASVIIQISTNNGSRKQQLQRLGRISRIKKN----ERIGYFYTLTSIDTHEEYFIHKKQI 536
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE 497
++ N G+ ++ I + + +EQ L++ +L S+
Sbjct: 537 YMQNLGFGFECINSTI-------ITHMNTNEQLNLIKYILNESD 573
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+ + CT ++ +++C + +S+EQW+ + + WST + I F+S K+
Sbjct: 215 AGKTLMTIGIICTFQQPTIIICTTTISIEQWRDEIRKWSTIPLNKIKCFSSIIKETIEES 274
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK 144
I++TTY MI + ++ ++ +++G+M+LD+ AK+
Sbjct: 275 YIVITTYQMIQSKE---------IEEIRKKKYGMMILDEVHSSVAKE 312
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 143 KKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFL 202
K +E DD+ ++++ Q++ + S P W+ PNG I +E + Y+ A +F+
Sbjct: 2 KSTIENDDS---------EEFKLQII----NTSNPYWICPNGLIIIERDNKNYQIASEFI 48
Query: 203 IAIAEPVCRPEHIHE 217
I++ C EH+ E
Sbjct: 49 KKISKVKCLLEHMEE 63
>gi|157874471|ref|XP_001685718.1| putative DNA repair helicase [Leishmania major strain Friedlin]
gi|68128790|emb|CAJ08923.1| putative DNA repair helicase [Leishmania major strain Friedlin]
Length = 806
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 164/261 (62%), Gaps = 11/261 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+ FR L V + +GLTAT +RED KI DL L+GPKLY+ + L +
Sbjct: 388 LDEVHVMPAESFRGSLGFVDAKGVIGLTATYVREDHKILDLFHLVGPKLYDISMETLASQ 447
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK---------RLLLYVMNPNKYRATQYLIAY 325
G++A+V C EV PM+ EF EY+ ++SK ++L NPNK + L+
Sbjct: 448 GYLAKVHCVEVRTPMTKEFGLEYMQ-RSSKVARAGTAPVLVMLAAANPNKMMCVRELVRQ 506
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
H G K ++ D++ LK Y +N P I G T ER+ I +F+ K+N I VS+V
Sbjct: 507 HLDAGAKILLCCDHIMLLKEYGELLNAPVICGSTQHKERLMIFSDFQSTSKINVICVSRV 566
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTME 444
D S +LP AN++IQ+SSHGGSRRQEAQRLGRILR K + A +A+FY+++S DT+E
Sbjct: 567 GDVSVNLPNANIVIQVSSHGGSRRQEAQRLGRILRPKERAANGRTVDAWFYSIISTDTVE 626
Query: 445 MSYSRKRQRFLINQGYSYKVI 465
++Y+ R FL++QGY+ +++
Sbjct: 627 INYAAHRTAFLVDQGYTCRIM 647
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWST 77
AGK+L+G+ C V+K LVLC VSVEQWK Q ++T
Sbjct: 247 AGKTLLGIMLMCKVKKPTLVLCAGSVSVEQWKSQILDYAT 286
>gi|407408839|gb|EKF32113.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi marinkellei]
Length = 778
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 164/262 (62%), Gaps = 11/262 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+ ++ L++V + +GLTAT +RED KI DL L+GPKLY+ +W L
Sbjct: 363 MDEVHVMPAEAYKESLSLVDAKGVVGLTATYVREDAKIRDLFHLVGPKLYDVSWETLASS 422
Query: 275 GFIARVQCAEVWCPMSPEFYREYLV------CKTSKRLLLYVM----NPNKYRATQYLIA 324
G++A V C EV P++ +F EY+ +++ L VM NPNK L+
Sbjct: 423 GYLANVTCIEVLTPLTRQFSLEYMQRSGEDHTLQQRKMPLLVMLAAANPNKMLCVLELVR 482
Query: 325 YHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384
H K +VF D++ L+ Y +N P I G T ER+ I +F+ K+N I +S+
Sbjct: 483 RHVADSSKILVFCDHLVLLREYGNLLNAPVICGQTPHRERLMIFSDFQSTSKLNVICLSR 542
Query: 385 VADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTM 443
V D S +LP ANV+IQ+SSHGGSRRQEAQRLGRILR K + + + +A+FYT++S DT+
Sbjct: 543 VGDVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKARASNGKMVDAWFYTIISTDTL 602
Query: 444 EMSYSRKRQRFLINQGYSYKVI 465
EM+Y+ R FL++QGY+ ++I
Sbjct: 603 EMAYAAHRTAFLVDQGYTCRII 624
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 21/91 (23%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWST-----ADDSM---------- 82
AGK+LVG+ C V+K L+LC VSVEQWK+Q +++ DD M
Sbjct: 229 AGKTLVGIMLLCKVKKPTLILCTGSVSVEQWKNQILEFASIRAHGTDDEMAAAEKHRSTL 288
Query: 83 -----ICRFTSEAKDKPM-GCGILVTTYSMI 107
I T + KD+ I++TTYSM+
Sbjct: 289 EGAARIACLTGKQKDQVTEETDIVLTTYSML 319
>gi|261335713|emb|CBH18707.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei gambiense DAL972]
Length = 777
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 156/260 (60%), Gaps = 10/260 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA ++ L + + +GLTAT +RED KI DL L+GPKL++ +W L
Sbjct: 368 MDEVHMMPADAYKDSLGFINAKGVVGLTATYVREDSKIRDLFHLVGPKLFDISWERLASS 427
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK---------TSKRLLLYVMNPNKYRATQYLIAY 325
G++A V C EV P++ F EYL T ++L NPNK ++
Sbjct: 428 GYLAHVTCIEVLTPLARRFSLEYLERSSELTSPQHGTPLLVMLAAANPNKMLCVMEIVKR 487
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
H K +VF D++ LK Y+ + P + G T ER+ I +F+ KVN + +S+V
Sbjct: 488 HVAESSKILVFCDHIMLLKEYSKLLGAPVVCGDTPHRERLMIFSDFQSTSKVNVVCLSRV 547
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTME 444
D S +LP ANV++Q+SSHGGSRRQEAQRLGRILR K K + + +A+FYT++S DT+E
Sbjct: 548 GDVSVNLPSANVVVQVSSHGGSRRQEAQRLGRILRPKEKASNGKPTDAWFYTVISTDTVE 607
Query: 445 MSYSRKRQRFLINQGYSYKV 464
MSY+ R FL++QGY+ V
Sbjct: 608 MSYAAHRTAFLVDQGYTCSV 627
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF 72
+GK+LVG+ C V+K L+LC GVSVEQW++Q
Sbjct: 229 SGKTLVGIMLLCKVKKPTLILCAGGVSVEQWRNQI 263
>gi|74026236|ref|XP_829684.1| DNA repair helicase and transcription factor protein [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|70835070|gb|EAN80572.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 777
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 156/260 (60%), Gaps = 10/260 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA ++ L + + +GLTAT +RED KI DL L+GPKL++ +W L
Sbjct: 368 MDEVHMMPADAYKDSLGFINAKGVVGLTATYVREDSKIRDLFHLVGPKLFDISWERLASS 427
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCK---------TSKRLLLYVMNPNKYRATQYLIAY 325
G++A V C EV P++ F EYL T ++L NPNK ++
Sbjct: 428 GYLAHVTCIEVLTPLARRFSLEYLERSSELTSPQHGTPLLVMLAAANPNKMLCVMEIVKR 487
Query: 326 HERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385
H K +VF D++ LK Y+ + P + G T ER+ I +F+ KVN + +S+V
Sbjct: 488 HVAESSKILVFCDHIMLLKEYSKLLGAPVVCGDTPHRERLMIFSDFQSTSKVNVVCLSRV 547
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTME 444
D S +LP ANV++Q+SSHGGSRRQEAQRLGRILR K K + + +A+FYT++S DT+E
Sbjct: 548 GDVSVNLPSANVVVQVSSHGGSRRQEAQRLGRILRPKEKASNGKPTDAWFYTVISTDTVE 607
Query: 445 MSYSRKRQRFLINQGYSYKV 464
MSY+ R FL++QGY+ V
Sbjct: 608 MSYAAHRTAFLVDQGYTCSV 627
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF 72
+GK+LVG+ C V+K L+LC GVSVEQW++Q
Sbjct: 229 SGKTLVGIMLLCKVKKPTLILCAGGVSVEQWRNQI 263
>gi|349805511|gb|AEQ18228.1| putative excision repair cross-complementing rodent repair
complementation group [Hymenochirus curtipes]
Length = 136
Score = 213 bits (543), Expect = 1e-52, Method: Composition-based stats.
Identities = 94/119 (78%), Positives = 107/119 (89%)
Query: 224 KMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCA 283
+ FRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ G+IA+VQCA
Sbjct: 18 QTFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCA 77
Query: 284 EVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFA 342
EVWCPMSPEFYREY+ KT KR+LLY +NPNK+RA Q+LI +HERR DK IVF+DNVFA
Sbjct: 78 EVWCPMSPEFYREYVAIKTKKRILLYTVNPNKFRACQFLIKFHERRNDKIIVFADNVFA 136
>gi|440803695|gb|ELR24578.1| DNA repair helicase rad25 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 560
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 155/249 (62%), Gaps = 4/249 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH PA F+RV T ++H KLGLTAT++RED+ IA+L L+GP+L E + L L+
Sbjct: 235 LDEVHLAPATTFKRVTTEFRAHVKLGLTATMVREDELIAELPTLVGPRLDEVDLLSLKIH 294
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
+A V C + CP++ F Y ++ +++ LL++ NPNK R L+ H RRG K
Sbjct: 295 NHVANVHCYRIVCPLTSAFGAAYRTARSPAEKRLLHITNPNKARIVFTLLKRHLRRGHKC 354
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+VF D++F L+ ++ + PYI G T +R + L F+ + +SKV D S DLP
Sbjct: 355 LVFCDDLFGLQWFSQVLGSPYIDGETKNEDREKSLNMFRTTKSSAYVLISKVGDHSIDLP 414
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EANV+IQ+ GSR QEAQRLGR+ R K GA + +A+FYT+VS+ T E+ YS +R+
Sbjct: 415 EANVVIQVGVVDGSRMQEAQRLGRVQRKKPGA---DVSAYFYTIVSEGTDEVGYSDRRRE 471
Query: 454 FLINQGYSY 462
F+ GY Y
Sbjct: 472 FMEEHGYLY 480
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---P 94
AGK+LVG+T ++K LV C S ++V QW+ QF WS + S I RF S+ + K
Sbjct: 137 AGKTLVGITVSSIIKKCILVFCTSMMAVNQWREQFLKWSDIEPSRISRFISDTRKKGEWD 196
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
CG+L+TTY+M + ++KR+ + + ++ + + WG+M+LD+
Sbjct: 197 HTCGLLITTYNMFT-SEKRAEHSTRMIEKCKERTWGLMILDE 237
>gi|440295401|gb|ELP88314.1| rad25/xp-B DNA repair helicase, putative [Entamoeba invadens IP1]
Length = 605
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 154/255 (60%), Gaps = 6/255 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH A F+ V + + S C++GLTAT +RED KI +L+FL GP LY+ +W +L K
Sbjct: 311 LDEVHASVANEFKEVYSKINSRCRIGLTATFVREDSKIGELDFLTGPLLYQQSWTKLIKD 370
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A+V C EV C M+ FY Y+ + R L NP K Q+L+ YH+ R ++
Sbjct: 371 GFLAQVHCFEVVCNMTQVFYERYVNEDEYRHRALASAANPTKIATVQFLVKYHKNRKEQI 430
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
I+F DN+ L+ A ++ P G T R +L+NFK N I +S V DTS D+P
Sbjct: 431 IIFCDNIVVLREIASRVGCPVFSGETPNKSRFDLLKNFK-NGLTPCIAMSSVGDTSLDIP 489
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A V+IQ+ + GSRRQ+ QRLGRI R K+ + AFFY+L S+DT E + RKRQ
Sbjct: 490 DATVIIQMCTSHGSRRQQLQRLGRISRVKQN----KGEAFFYSLTSKDTHEEYFVRKRQE 545
Query: 454 FLINQGYSYKVITKL 468
++ N G+ +++I L
Sbjct: 546 YMQNLGFGFQIIDNL 560
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 9/99 (9%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+ + C +++ ++++C S SVEQW+ + + WST + I FTS K+ GC
Sbjct: 224 AGKTLLSIALICGMQQMSIIICTSIASVEQWRDEIRKWSTVPFNKIKCFTSSVKEPLDGC 283
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+++TTY M+ +S E +Q ++L +G+M+LD+
Sbjct: 284 YVVLTTYQMM-----QSKEIEQVTRYL----YGMMILDE 313
>gi|217928279|gb|ACK57262.1| CG8019-like protein, partial [Drosophila affinis]
Length = 324
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 134 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 193
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 194 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 239
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/95 (91%), Positives = 92/95 (96%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 230 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 289
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLY 309
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLY
Sbjct: 290 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLY 324
>gi|159111749|ref|XP_001706105.1| DNA repair helicase TFIIH P90 [Giardia lamblia ATCC 50803]
gi|157434198|gb|EDO78431.1| DNA repair helicase TFIIH P90 [Giardia lamblia ATCC 50803]
Length = 765
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 165/281 (58%), Gaps = 38/281 (13%)
Query: 217 EVHTIPAKMFRRVLT----------IVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEA 266
E H + A+ +R + ++S+CK+GLTAT LREDD++ +L +L+G KLYE+
Sbjct: 444 EAHQVMAETYRTLFVTDNVNTKANLFLRSYCKIGLTATPLREDDEMTNL-YLLGNKLYES 502
Query: 267 NWLELQKRGFIARVQCAEVWCPMSPEFYREYL--------------VCK-----TSKRLL 307
NW +L KRGFIA++QCAE+ CPM FY ++L VC T K +
Sbjct: 503 NWSDLAKRGFIAKLQCAEIRCPMHHIFYDDWLDQNTAQATNQDRTTVCVNDVMITRKTYM 562
Query: 308 LY--VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERI 365
Y ++NP K + YL YH RRGD+ ++F D + A K YA + P+I G S ER
Sbjct: 563 KYLTILNPYKVQTAWYLKEYHTRRGDQVLLFCDTIMAAKMYARMFDVPFIMGACSDDER- 621
Query: 366 QILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425
+ L N ++ + +S V DTS DLP+ANV+I++ SRRQEAQR+GRI R K G
Sbjct: 622 ECLVNAFATRTISCLMLSSVGDTSLDLPDANVIIELDWQERSRRQEAQRMGRISRPKSG- 680
Query: 426 IAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-INQGYSYKVI 465
+ NA+FY LVS+DT E + +R+ +L NQGY Y ++
Sbjct: 681 ---DQNAYFYILVSEDTNEQHTAAERRTYLSYNQGYPYSIM 718
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 8/57 (14%)
Query: 169 LKPDHKSRPLWVAP--------NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LKPDH RPL V P + + LE+FSP+Y A++FL+++AE RP ++HE
Sbjct: 13 LKPDHHKRPLSVFPYSTNALSADHVVLLETFSPMYDEAYNFLVSLAEAETRPTYVHE 69
>gi|308160768|gb|EFO63241.1| DNA repair helicase TFIIH P90 [Giardia lamblia P15]
Length = 765
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 165/281 (58%), Gaps = 38/281 (13%)
Query: 217 EVHTIPAKMFRRVLT----------IVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEA 266
E H + A+ +R + ++S+CK+GLTAT LREDD++ +L +L+G KLYE+
Sbjct: 444 EAHQVMAETYRTLFVTDNVNTKANLFLRSYCKIGLTATPLREDDEMTNL-YLLGNKLYES 502
Query: 267 NWLELQKRGFIARVQCAEVWCPMSPEFYREYL--------------VCK-----TSKRLL 307
NW +L KRGFIA++QCAE+ CPM FY ++L VC T K +
Sbjct: 503 NWSDLAKRGFIAKLQCAEIRCPMHHIFYDDWLDQNTAQAANQDRATVCVNDVMITRKTYM 562
Query: 308 LY--VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERI 365
Y ++NP K + YL YH RRGD+ ++F D + A K YA + P+I G S ER
Sbjct: 563 KYLTILNPYKVQTAWYLKEYHTRRGDQVLLFCDTIMAAKMYARMFDVPFIMGACSDDER- 621
Query: 366 QILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425
+ L N ++ + +S V DTS DLP+ANV+I++ SRRQEAQR+GRI R K G
Sbjct: 622 ECLVNAFATRTISCLMLSSVGDTSLDLPDANVIIELDWQERSRRQEAQRMGRISRPKSG- 680
Query: 426 IAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-INQGYSYKVI 465
+ NA+FY LVS+DT E + +R+ +L NQGY Y ++
Sbjct: 681 ---DQNAYFYILVSEDTNEQYTAAERRTYLSYNQGYPYSIM 718
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 8/57 (14%)
Query: 169 LKPDHKSRPLWVAP--------NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
LKPDH RPL + P + + LE+FSP+Y A++FL+++AE RP ++HE
Sbjct: 13 LKPDHHKRPLSIFPYSTNVLSADHVVLLETFSPMYDEAYNFLVSLAEAETRPTYVHE 69
>gi|253745292|gb|EET01319.1| DNA repair helicase TFIIH P90 [Giardia intestinalis ATCC 50581]
Length = 765
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 165/281 (58%), Gaps = 38/281 (13%)
Query: 217 EVHTIPAKMFRRVLT----------IVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEA 266
E H + A+ +R + ++S+CK+GLTAT LREDD++ +L +L+G KLYE+
Sbjct: 444 EAHQVMAETYRTLFVTDNVNAKANLFLRSYCKIGLTATPLREDDEMTNL-YLLGNKLYES 502
Query: 267 NWLELQKRGFIARVQCAEVWCPMSPEFYREYL--------------VCK-----TSKRLL 307
NW +L KRGFIA++QCAE+ CPM FY ++L VC T K +
Sbjct: 503 NWSDLAKRGFIAKLQCAEIRCPMHHIFYDDWLDQHTAQAANQDRATVCVNDVMITRKTYM 562
Query: 308 LY--VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERI 365
Y ++NP K + YL YH RRGD+ ++F D + A K YA + P+I G S ER
Sbjct: 563 KYLTILNPYKVQTAWYLKEYHTRRGDQVLLFCDTIMAAKMYARMFDVPFIMGACSDDER- 621
Query: 366 QILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425
+ L N ++ + +S V DTS DLP+ANV+I++ SRRQEAQR+GRI R K G
Sbjct: 622 ECLVNAFATRTISCLMLSSVGDTSLDLPDANVIIELDWQERSRRQEAQRMGRISRPKSG- 680
Query: 426 IAEEYNAFFYTLVSQDTMEMSYSRKRQRFL-INQGYSYKVI 465
+ NA+FY LVS+DT E + +R+ +L NQGY Y ++
Sbjct: 681 ---DQNAYFYILVSEDTNEQYTAAERRTYLSYNQGYPYSIM 718
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 169 LKPDHKSRPLWV---APNGH-----IFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHT 220
L+PDH RPL + +PN + LE+FSP+Y A++FL+++AE RP ++HE
Sbjct: 13 LRPDHHKRPLSIFPYSPNALSADHVVLLETFSPMYDEAYNFLVSLAEAETRPTYVHEYRI 72
Query: 221 IPAKM---FRRVLTIVQSHCKLG-------LTATLLREDDKIADLNFLIGPKLYEAN 267
+ T + +LG L TLL ++A+ I +Y++N
Sbjct: 73 TEESLHIGLSLGYTATEIEIRLGYYSKYRRLPPTLLSALRRLANNQGTISFSIYDSN 129
>gi|393912228|gb|EJD76645.1| helicase, variant [Loa loa]
Length = 606
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 102/118 (86%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIV++HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+EL+K
Sbjct: 456 LDEVHTIPAKMFRRVLTIVRAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELEKA 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332
G IA+VQCAEVWCPMS EFY YL + +RLLL VMNPNK+R Q+LI YHERR DK
Sbjct: 516 GQIAKVQCAEVWCPMSAEFYSYYLRAQIGRRLLLAVMNPNKFRICQFLIMYHERRNDK 573
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 72/101 (71%)
Query: 135 DDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPV 194
D VP AA N+E D+FGAKDYR +M LKPDH SRPLWVAP+GHIFLESFSPV
Sbjct: 42 DATVPKAASHNLEGQTMITRTDDFGAKDYRHEMKLKPDHVSRPLWVAPDGHIFLESFSPV 101
Query: 195 YRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
Y+HAHDFLIAIAEPVCRPE IHE ++ V +Q+
Sbjct: 102 YKHAHDFLIAIAEPVCRPEFIHEYQLTAYSLYAAVSIGLQT 142
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 81/115 (70%), Gaps = 12/115 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+LVGVTA TV KR LVL S VSVEQW+ QFKLWST D + RFT EA+D
Sbjct: 354 AGKTLVGVTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSG 413
Query: 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
KP+ C ++TYSM+++T KR++ A++ M++++++EWG++LLD+ + AK
Sbjct: 414 SNANKPIVC---ISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAK 465
>gi|268323681|emb|CBH37269.1| putative helicase [uncultured archaeon]
Length = 567
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 154/254 (60%), Gaps = 6/254 (2%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED K D+ LIGPK Y+A W EL+++G+
Sbjct: 316 EVHMLPAPVFR-VTAELQARRRLGLTATLVREDGKERDVFSLIGPKKYDAPWKELEEQGW 374
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ M E +Y + + + NP KY T+ ++ YH ++GD+ +V
Sbjct: 375 IAEAVCNEIRLKMDDELRLQYALAADRNKHRIAAENPRKYDITRRIVEYHRKQGDRILVI 434
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ + G T ER+++ F+ + +++ + VSKVA+ + DLP+AN
Sbjct: 435 GTYIEQLERVAEMLDAKLLTGKTPNRERMKLYDAFR-SGEIDIMVVSKVANFAIDLPDAN 493
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +QIS GSR++EAQRLGR+LR K + AFFYTLVS+DT + + KRQ FL
Sbjct: 494 VAVQISGTFGSRQEEAQRLGRLLRPKD----DRSPAFFYTLVSKDTKDQDFGAKRQLFLT 549
Query: 457 NQGYSYKVITKLAG 470
QGY Y + +G
Sbjct: 550 EQGYRYHISDDFSG 563
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ + LV+ S V+ QW+ + + D M+ +++E K+ KP
Sbjct: 220 AGKTVVGMGVLEKLDTNTLVITTSTVASRQWREELLDKTDLDGEMVGEYSAERKEIKP-- 277
Query: 97 CGILVTTYSMISHTQKRSWE-ADQTMQWLQNQEWGIMLLDD 136
I + TY +I++ ++S E A + WG+++ D+
Sbjct: 278 --ITIATYQIITYRPRKSDEDAFPHFSLFNERNWGLIIYDE 316
>gi|375292652|ref|YP_005127191.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|376242398|ref|YP_005133250.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
CDCE 8392]
gi|371582323|gb|AEX45989.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|372105640|gb|AEX71702.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
CDCE 8392]
Length = 554
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYVDQLAEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|376256675|ref|YP_005144566.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
VA01]
gi|372119192|gb|AEX82926.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
VA01]
Length = 554
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYVDQLTEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|376248066|ref|YP_005140010.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC04]
gi|376250862|ref|YP_005137743.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC03]
gi|372112366|gb|AEX78425.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC03]
gi|372114634|gb|AEX80692.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC04]
Length = 554
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYVDQLTEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|376284299|ref|YP_005157509.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
31A]
gi|371577814|gb|AEX41482.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
31A]
Length = 554
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYVDQLAEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|376287275|ref|YP_005159841.1| putative ATP-dependent DNA helicase, partial [Corynebacterium
diphtheriae BH8]
gi|371584609|gb|AEX48274.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
BH8]
Length = 325
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 74 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 132
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 133 IATAECTEVRTTMAESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHA--GQPTLII 190
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 191 GAYVDQLAEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 249
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 250 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 305
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 306 EQGYAYRII 314
>gi|38233371|ref|NP_939138.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
gi|375290427|ref|YP_005124967.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
241]
gi|376245260|ref|YP_005135499.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC01]
gi|376289918|ref|YP_005162165.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|38199631|emb|CAE49290.1| Putative ATP-dependent DNA helicase [Corynebacterium diphtheriae]
gi|371580098|gb|AEX43765.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
241]
gi|372103314|gb|AEX66911.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|372107890|gb|AEX73951.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC01]
Length = 554
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYVDQLAEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|397648048|gb|EJK77960.1| hypothetical protein THAOC_00170, partial [Thalassiosira oceanica]
Length = 594
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 116/159 (72%), Gaps = 9/159 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV+ V++HC+LG+ D A LNFLIGPKLYEANW++L +
Sbjct: 441 MDEVHVVPAQMFRRVIGTVKAHCRLGV--------DGDAHLNFLIGPKLYEANWMDLTTQ 492
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK-RLLLYVMNPNKYRATQYLIAYHERRGDKT 333
G++A VQC EVWCPM+ F REYL+ + + + LYVMNP+K RAT++L+ +HE RGDK
Sbjct: 493 GYLANVQCVEVWCPMTGPFMREYLMANSGRMKQQLYVMNPSKLRATEFLVKFHEERGDKI 552
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFK 372
IVFSD V++LK YA + +P IYG TS+ ER QIL F+
Sbjct: 553 IVFSDLVYSLKLYAAMLKRPMIYGETSERERQQILGVFR 591
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PM 95
AGK+L GVTA T++K + LC + VSV QWK+QF+LW+T D IC FTS+ K+ P
Sbjct: 343 AGKTLTGVTAAQTIKKSVVCLCTNAVSVLQWKYQFQLWTTIPDENICVFTSDRKEDLVPG 402
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+L+TTY+M+S + +RS +A + M+ ++ +EWG++L+D+
Sbjct: 403 RPVVLITTYTMMSFSGRRSDKAQEVMESIRGREWGLLLMDE 443
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 160 AKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVH 219
DY + + LK DH +RP W P+G I+LE+F +Y A+DFL+AI+EPV RPE++HE
Sbjct: 30 GSDY-SDLPLKADHPARPCWTCPDGTIYLEAFHSLYAKAYDFLVAISEPVARPEYLHEYK 88
Query: 220 TIPAKMFRRVLTIVQS 235
P ++ V T + +
Sbjct: 89 LTPYSLYAAVATNIDT 104
>gi|443309230|ref|ZP_21038971.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442780727|gb|ELR90879.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 562
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED K D+ LIGPK Y+ W EL+ +GF
Sbjct: 313 EVHLLPAPIFR-ITAELQARRRLGLTATLIREDGKEGDVFALIGPKRYDVPWRELEVQGF 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ P +P+ EY + + + NP KY Q L+ + G + ++
Sbjct: 372 IAPAECVEIRVPQAPDRQMEYALADKRHQFRIAAENPRKYEVVQSLL--QKEAGHRILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + LK A K P + G T QSER ++ + F+ + + +S+V + + DLP+A+
Sbjct: 430 GEYLEQLKQIAQKTKLPVVTGKTPQSERDRLYEQFRCG-AITGLILSRVGNFALDLPDAD 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQ+S GSR++EAQRLGR+LR K + ++A FYTLVS T E ++R RQ FL+
Sbjct: 489 VLIQVSGKYGSRQEEAQRLGRVLRPK----TDGHSAHFYTLVSLRTCEEDFARHRQLFLV 544
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 545 EQGYNYRI 552
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ A TV+ LVL +S SV QW+ + +T + I ++ E+K
Sbjct: 219 AGKTMVGLAAMTTVQSNTLVLTSSLTSVRQWRRELLDKTTLPEDAIAEYSGESKQT---A 275
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++S+ + E Q + WG+++ D+
Sbjct: 276 PVTLATYQILSYRSNKDGEFPH-FQLFSARSWGLIIYDE 313
>gi|376292821|ref|YP_005164495.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC02]
gi|372110144|gb|AEX76204.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC02]
Length = 554
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYVDQLTEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYEAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|376253869|ref|YP_005142328.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
PW8]
gi|372116953|gb|AEX69423.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
PW8]
Length = 554
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLAEIGERLHTPVVDGSTSNKKREELFAAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|419860381|ref|ZP_14383022.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387982775|gb|EIK56274.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 554
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + R L +K RA L+A H G T++
Sbjct: 362 IATAECTEVRTTMTESERMVYATAENQDRYRLAACAASKLRAVDKLVAQHT--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P + G TS +R ++ F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLAEIGERLHTPVVDGSTSNKKREELFSAFR-NGEITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGAHAHFYTVVSRDSLDSDYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|146164780|ref|XP_001470758.1| rad25/xp-B DNA repair helicase [Tetrahymena thermophila]
gi|146145659|gb|EDK31797.1| rad25/xp-B DNA repair helicase [Tetrahymena thermophila SB210]
Length = 698
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 167/278 (60%), Gaps = 14/278 (5%)
Query: 223 AKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQC 282
A ++++ K+GLTAT RED+KI DL +IGPKLYEAN EL + ++A+ C
Sbjct: 404 ASTYKKIFEEFNFKLKIGLTATPYREDNKIDDLFHVIGPKLYEANISELIQDSYLAKPYC 463
Query: 283 AEVWCPM---SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDN 339
C M +F ++ K + L NP K++ YLI +HE R DK +VF D
Sbjct: 464 VVFRCKMHECCEDFMKDR---KFKNKPSLQSGNPEKFKLLYYLIKFHESRKDKILVFCDQ 520
Query: 340 VFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLI 399
+ LK+Y+ KM P IYG E++ L F+ ++NT+F+S+V DT+ DLP ANV I
Sbjct: 521 IPVLKYYSQKMGYPAIYGEVGLLEKLVWLDLFR-KGEINTLFLSRVGDTALDLPIANVCI 579
Query: 400 QISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQG 459
QI GSRRQE QRLGRI+R K+G EYNAFFYT+VS++T + + +RQ+ L++ G
Sbjct: 580 QIGFQFGSRRQEVQRLGRIMRRKEGQKG-EYNAFFYTIVSKNTEQAQFYYRRQKSLMDLG 638
Query: 460 YSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE 497
+++VI ++E+ G + + + L Q+++ AS+
Sbjct: 639 INFEVI----DIDEQNGNKF--KYDPDILDQKIIRASD 670
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK---DKP 94
AGK+L+G+ ++ +V+C+ + +QWK++F W+T I +T + K +K
Sbjct: 282 AGKTLLGIIVTEKIKGNTIVICDIDTATKQWKNEFIRWTTVKPDRIKIYTGKTKNLQEKQ 341
Query: 95 MGCGILVTTYSMIS 108
IL+TT+ +S
Sbjct: 342 TKPFILITTFKQLS 355
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 185 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
+IF+E+F Y+ ++FLI IAEPV +P IH
Sbjct: 55 YIFVEAFHEKYKEVYEFLIKIAEPVNKPNFIH 86
>gi|227548339|ref|ZP_03978388.1| DNA helicase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079657|gb|EEI17620.1| DNA helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 547
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 302 EVHLLPAPVFRMAADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKELEMAGY 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV +S + Y +T +R + + K L+A H+ G++ ++
Sbjct: 361 IATAECVEVRTSLSADERMAYATAETKQRYRIAATSRGKDAVVDILLARHQ--GEQVLII 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A + N P ++G TS +R + F+ + +++T+ VSKVA+ S DLPEA
Sbjct: 419 GAYVEQLEGIAARTNAPLVHGTTSTKKREEAFDAFR-SGEISTLVVSKVANFSIDLPEAA 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+V++DT++ Y+ +RQRFL
Sbjct: 478 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGGGALFYTVVARDTLDAEYAMRRQRFLA 533
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 534 EQGYAYRLV 542
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 210 AGKTIVGAASMAQAKTTTLILVTNTVAGRQWRDELLRRTTLQPEEIGEYSGERKEIRP-- 267
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 268 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 302
>gi|428303982|ref|YP_007140807.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428304297|ref|YP_007141122.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428245517|gb|AFZ11297.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428245832|gb|AFZ11612.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
Length = 556
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 152/248 (61%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIGPK Y+ W EL+ +GF
Sbjct: 313 EVHLLPAPIFR-ITAELQARRRLGLTATLIREDGREGDVFALIGPKRYDVPWRELEGQGF 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ P E EY + + + + NP K Q L+ H++ G + ++
Sbjct: 372 IAAAECTEIRVPQDSERQMEYALAEKRHQFRIAAENPRKLMVVQSLL--HQQIGHRILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + LK A P I G TSQ ER ++ + F+ + ++ + +S+V + + DLP+A+
Sbjct: 430 GEYLDQLKQIAALTGLPIITGKTSQIERDRLYEQFR-DGSISGLILSRVGNFALDLPDAD 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQ+S GSR++EAQRLGRILR K + ++A FYTLVSQ T E ++R RQ FL
Sbjct: 489 VLIQVSGKYGSRQEEAQRLGRILRPKN----DGHSAQFYTLVSQRTCEEDFARHRQLFLA 544
Query: 457 NQGYSYKV 464
QGYSY++
Sbjct: 545 EQGYSYQI 552
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
+GK++VG+ A V+ LVL +S SV QW+ + +T + I ++ E+K
Sbjct: 219 SGKTMVGLAAIAAVQSNTLVLTSSLTSVRQWRRELLDKTTLPEDAIAEYSGESKQT---A 275
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +IS+ + ++ E Q + WG+++ D+
Sbjct: 276 PVTLATYQIISYRKSKTGEFPH-FQLFNARSWGLIIYDE 313
>gi|451943541|ref|YP_007464177.1| DNA helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
gi|451902928|gb|AGF71815.1| DNA helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
Length = 555
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ G+
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLETAGY 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV MS Y +T +R L K R + L+A HE G T++
Sbjct: 362 IATAECVEVRTTMSESERMVYATAETGERYRLAASASGKLRVVEKLLARHE--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + + P I G TS +R + F+ N +++ + VSKVA+ S DLPEA
Sbjct: 420 GAYLDQLEELSERFDAPIIEGRTSNRKREALFDQFR-NGEISVLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR KK + A FY++VS+DT++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPKK----DGGQAHFYSVVSRDTLDAEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIV 543
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + R L+L + V+ QWK + +T + I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMAKARATTLILVTNTVAGRQWKDELLRRTTLTEDEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ + + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTRGEYRA---LELFDSRDWGLIIYDE 303
>gi|296118323|ref|ZP_06836904.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
DSM 20306]
gi|295968881|gb|EFG82125.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
DSM 20306]
Length = 543
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 155/249 (62%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 298 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKELEMSGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M+PE Y + R + K+ A + +I H ++ + ++
Sbjct: 357 IATADCVEVRVDMNPEERMVYATAENRDRYRISATADAKFEAVREIIDKHAQQ--QMLII 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A +++ P I+G TS +ER ++ F+ N ++ + VSKVA+ S DLPEA
Sbjct: 415 GGYVEQLEDIAARLDAPLIHGRTSNAEREKLFDAFR-NGEIQVLVVSKVANFSIDLPEAA 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYTLV++D+++ +Y+ RQRFL
Sbjct: 474 VAIQLSGTFGSRQEEAQRLGRLLRPK----ADGGEATFYTLVTRDSIDATYALHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRLL 538
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T ++ I ++ E K+ KP
Sbjct: 206 AGKTIVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTTLTENEIGEYSGEKKEIKP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLVIYDE 298
>gi|379714872|ref|YP_005303209.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 316]
gi|387138191|ref|YP_005694170.1| UvrABC system protein B [Corynebacterium pseudotuberculosis CIP
52.97]
gi|387140207|ref|YP_005696185.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1/06-A]
gi|389849940|ref|YP_006352175.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 258]
gi|349734669|gb|AEQ06147.1| UvrABC system protein B [Corynebacterium pseudotuberculosis CIP
52.97]
gi|355391998|gb|AER68663.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653578|gb|AFB71927.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 316]
gi|388247246|gb|AFK16237.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 258]
Length = 549
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L++RGF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEQRGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ E Y + R + +K RA L+ H +G T++
Sbjct: 362 IATAECTEVRTTMTHEERMLYATAENQDRYRIAACAESKLRAVDTLL--HRHQGLPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P I G TS +R ++ F+ + T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLEELGARFDAPVIEGETSNKKREELFNKFRAG-HITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGSEAHFYSVVSRDSLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIV 543
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMARAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|300858010|ref|YP_003782993.1| hypothetical protein cpfrc_00592 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288177|ref|YP_005122718.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 3/99-5]
gi|383313771|ref|YP_005374626.1| UvrABC system protein B [Corynebacterium pseudotuberculosis P54B96]
gi|384506284|ref|YP_005682953.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|384508373|ref|YP_005685041.1| UvrABC system protein B [Corynebacterium pseudotuberculosis I19]
gi|384510465|ref|YP_005690043.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
gi|385807048|ref|YP_005843445.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 267]
gi|387136132|ref|YP_005692112.1| UvrABC system protein B [Corynebacterium pseudotuberculosis
42/02-A]
gi|300685464|gb|ADK28386.1| hypothetical protein cpfrc_00592 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205735|gb|ADL10077.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|308275971|gb|ADO25870.1| UvrABC system protein B [Corynebacterium pseudotuberculosis I19]
gi|341824404|gb|AEK91925.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
gi|348606577|gb|AEP69850.1| UvrABC system protein B [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575466|gb|AEX39069.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 3/99-5]
gi|380869272|gb|AFF21746.1| UvrABC system protein B [Corynebacterium pseudotuberculosis P54B96]
gi|383804441|gb|AFH51520.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 267]
Length = 549
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L++RGF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEQRGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ E Y + R + +K RA L+ H +G T++
Sbjct: 362 IATAECTEVRTTMTHEERMLYATAENQDRYRIAACAESKLRAVDTLL--HRHQGLPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P I G TS +R ++ F+ + T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAG-HITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGSEAHFYSVVSRDSLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIV 543
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMARAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|384504192|ref|YP_005680862.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1002]
gi|302330291|gb|ADL20485.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1002]
Length = 549
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L++RGF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEQRGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ E Y + R + +K RA L+ H +G T++
Sbjct: 362 IATAECTEVRTTMTHEERMLYATAENQDRYRIAACAESKLRAVDTLL--HRHQGLPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P I G TS +R ++ F+ + T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAG-HITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGSEAHFYSVVSRDSLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIV 543
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMARAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|386739932|ref|YP_006213112.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 31]
gi|384476626|gb|AFH90422.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 31]
Length = 549
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L++RGF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEQRGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +CAEV M+ E Y + R + +K RA L+ H +G T++
Sbjct: 362 IATAECAEVRTTMTHEERMLYATAENQDRYRIAACAESKLRAVDTLL--HRHQGLPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P I G TS +R ++ F+ + T+ VSKVA+ S +LPEA
Sbjct: 420 GAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAG-HITTLVVSKVANFSINLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGSEAHFYSVVSRDSLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIV 543
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMARAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|433543346|ref|ZP_20499755.1| ATP-dependent helicase [Brevibacillus agri BAB-2500]
gi|432185347|gb|ELK42839.1| ATP-dependent helicase [Brevibacillus agri BAB-2500]
Length = 554
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V + +Q+ +LGLTATL+RED + D+ LIGPK YE W ++ G+
Sbjct: 308 EVHLLPAPVFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPKKYEVPWKAMEDAGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ P P++ Y ++ + NP K + L+ HE GD+ ++
Sbjct: 367 IAEARCREIRLPFEPKWREAYAHATARQKFRIAAENPKKLDVVKKLLERHE--GDRVLII 424
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A + P I G + ER + Q FK ++ + VSKVA+ + DLP+AN
Sbjct: 425 GQYVDQLEQMATALQLPLITGKVPEKERETLYQQFK-KGEITRLIVSKVANFAVDLPDAN 483
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K E A FYTLV++DT E +S RQ FL+
Sbjct: 484 VAIQISGTFGSRQEEAQRLGRILRPK----TENNTAHFYTLVTRDTREQEFSLHRQLFLV 539
Query: 457 NQGYSYKVI 465
QGY Y++I
Sbjct: 540 EQGYPYEII 548
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A ++ L+L + SV QW + + D ++ +T + K+ KP
Sbjct: 214 AGKTVIGIGAISQLQTATLILTTNTTSVRQWIAELLDKTDLDPELVGEYTGDHKEVKP-- 271
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I V TY ++++ + S + M+ ++WG+++ D+
Sbjct: 272 --ITVATYQILTY-RPTSLDEFPHMKLFSERDWGLIIYDE 308
>gi|399052627|ref|ZP_10741929.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398049483|gb|EJL41902.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 554
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V + +Q+ +LGLTATL+RED + D+ LIGPK YE W ++ G+
Sbjct: 308 EVHLLPAPVFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPKKYEVPWKAMEDAGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ P P++ Y ++ + NP K + L+ HE GD+ ++
Sbjct: 367 IAEARCREIRLPFEPKWREAYAHATARQKFRIAAENPKKLDVVKKLLERHE--GDRVLII 424
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A + P I G + ER + Q FK ++ + VSKVA+ + DLP+AN
Sbjct: 425 GQYVDQLEQMATALQLPLITGKVPEKERETLYQQFK-KGEITRLIVSKVANFAVDLPDAN 483
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K E A FYTLV++DT E +S RQ FL+
Sbjct: 484 VAIQISGTFGSRQEEAQRLGRILRPK----TENNTAHFYTLVTRDTREQEFSLHRQLFLV 539
Query: 457 NQGYSYKVI 465
QGY Y++I
Sbjct: 540 EQGYPYEII 548
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A ++ L+L + SV QW + + D ++ + + K+ KP
Sbjct: 214 AGKTVIGIGAISQLQTATLILTTNTTSVRQWIAELLDKTDLDPELVGEYIGDHKEVKP-- 271
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I V TY ++++ + S + M+ ++WG+++ D+
Sbjct: 272 --ITVATYQILTY-RPTSLDEFPHMKLFSERDWGLIIYDE 308
>gi|430746995|ref|YP_007206124.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018715|gb|AGA30429.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 570
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 150/249 (60%), Gaps = 6/249 (2%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED++ D+ LIGPK ++ W L+ +G+
Sbjct: 313 EVHLLPAPVFR-VTADIQARRRLGLTATLVREDNREEDVFSLIGPKKFDVPWRVLESKGW 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA QC EV + + EY V + + L NP+K L+ H+ D+ +V
Sbjct: 372 IAEAQCHEVRLGLPGDARMEYAVAEWRDKFRLASENPSKDDLVALLLDEHDGPDDRVLVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + + P I G TS SER + F+ + + +SKV + + DLP+AN
Sbjct: 432 GQYLKQLRRIAARFDVPLITGQTSNSEREDLYGRFRRG-DIRRLVLSKVGNFAIDLPDAN 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQ+S GSR++EAQRLGRILR K+G E A FY+LV++DT EM ++ RQ FL
Sbjct: 491 VMIQVSGTFGSRQEEAQRLGRILRPKEG----EVPASFYSLVTRDTREMDFAHHRQLFLT 546
Query: 457 NQGYSYKVI 465
QGYSY+++
Sbjct: 547 EQGYSYEIL 555
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG+TA ++K LVL S +VEQWK + + DDSM+ +T ++K
Sbjct: 218 GAGKTIVGLTALAALKKNTLVLTTSTTAVEQWKREILDKTDLDDSMVATYTGDSK---AI 274
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++++ K+ + ++WG+++ D+
Sbjct: 275 APVTLATYQIVTYRPKKDGDFPH-FSLFNQRDWGLIIYDE 313
>gi|397653495|ref|YP_006494178.1| hypothetical protein CULC0102_0743 [Corynebacterium ulcerans 0102]
gi|393402451|dbj|BAM26943.1| hypothetical protein CULC0102_0743 [Corynebacterium ulcerans 0102]
Length = 549
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L++RGF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEQRGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ E Y + R + +K RA L+ H+ G T++
Sbjct: 362 IATAECTEVRTTMTEEERMLYATAENQDRYRIAACAESKLRAVDTLLQRHQ--GLPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G TS +R ++ F+ + T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLEELGARFGVPVIEGKTSNKKREELFNKFRAG-DITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K ++ A FY++VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----SDGSEAHFYSVVSRDSLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMAQAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|337290254|ref|YP_004629275.1| hypothetical protein CULC22_00643 [Corynebacterium ulcerans
BR-AD22]
gi|384515173|ref|YP_005710265.1| hypothetical protein CULC809_00635 [Corynebacterium ulcerans 809]
gi|334696374|gb|AEG81171.1| hypothetical protein CULC809_00635 [Corynebacterium ulcerans 809]
gi|334698560|gb|AEG83356.1| hypothetical protein CULC22_00643 [Corynebacterium ulcerans
BR-AD22]
Length = 549
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L++RGF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEQRGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ E Y + R + +K RA L+ H+ G T++
Sbjct: 362 IATAECTEVRTTMTEEERMLYATAENQDRYRIAACAESKLRAVDTLLQRHQ--GLPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G TS +R ++ F+ + T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLEELGTRFGVPVIEGKTSNKKREELFNKFRAG-DITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K ++ A FY++VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----SDGSEAHFYSVVSRDSLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMAQAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|452991606|emb|CCQ97028.1| putative ATP-dependent helicase [Clostridium ultunense Esp]
Length = 580
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIG K + W +L+ G+
Sbjct: 317 EVHLLPAPVFR-ITADIQAKRRLGLTATLVREDGREEDVFSLIGSKKADVPWKDLEDEGW 375
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ PM + Y+V ++ + NP K +L+ H R D+ +V
Sbjct: 376 IAEASCIEIRVPMPTDVRENYVVAGAREKYRIAAENPEKLAVLDHLLKRH--REDQVLVI 433
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + N P I G T+Q ER ++ ++F+ K+ I VSKVA+ + DLP+AN
Sbjct: 434 GQYIRQLEEIATRYNAPLITGKTTQWEREKLYEDFRTG-KIRLIVVSKVANFAIDLPDAN 492
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K+ E A+FYTLV++D+ + ++ RQ FL+
Sbjct: 493 VAIQVSGTYGSRQEEAQRLGRILRPKE----RENKAYFYTLVTRDSRDQEFAMNRQLFLV 548
Query: 457 NQGYSYKV 464
QGYSY++
Sbjct: 549 EQGYSYEI 556
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG+ V+ L+L +G SV+QW + ++ + I +T E K+ +P
Sbjct: 221 GAGKTIVGLGVMEKVKMETLILTTNGTSVKQWVRELLDKTSLTEEKIGEYTGEKKEIRP- 279
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY ++++ + E ++ + WG+++ D+
Sbjct: 280 ---VTVATYQILTYRPDKEKEEYPHLELFNQRNWGLIIYDE 317
>gi|312194018|ref|YP_004014079.1| helicase domain-containing protein [Frankia sp. EuI1c]
gi|311225354|gb|ADP78209.1| helicase domain protein [Frankia sp. EuI1c]
Length = 545
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK ++A W E++ +G+
Sbjct: 299 EVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWREIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ + Y V + +R + +K+ + L+ H GD+ +V
Sbjct: 358 IAPAECTEVRVTLTEDERMSYAVAEADERYRMCATALSKHGVVERLVRKHS--GDRVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDALGRSLDAPVIQGSTRNKERERLFEAFRTG-EIKTLVVSKVANVSIDLPEAG 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRSAHFYTVVSRDTLDQEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
>gi|392400142|ref|YP_006436742.1| UvrABC system protein B [Corynebacterium pseudotuberculosis Cp162]
gi|390531220|gb|AFM06949.1| UvrABC system protein B [Corynebacterium pseudotuberculosis Cp162]
Length = 549
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTA L+RED + D+ LIGPK Y+A W +L++RGF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTAKLVREDGREGDVFSLIGPKRYDAPWKDLEQRGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ E Y + R + +K RA L+ H +G T++
Sbjct: 362 IATAECTEVRTTMTHEERMLYATAENQDRYRIAACAESKLRAVDTLL--HRHQGLPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P I G TS +R ++ F+ + T+ VSKVA+ S DLPEA
Sbjct: 420 GAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAG-HITTLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGSEAHFYSVVSRDSLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIV 543
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMARAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 303
>gi|310642758|ref|YP_003947516.1| DNA or RNA helicase of superfamily ii [Paenibacillus polymyxa SC2]
gi|386041839|ref|YP_005960793.1| tFIIH basal transcription factor complex helicase XPB subunit DNA
excision repair protein ERCC-3 [Paenibacillus polymyxa
M1]
gi|309247708|gb|ADO57275.1| DNA or RNA helicase of superfamily II [Paenibacillus polymyxa SC2]
gi|343097877|emb|CCC86086.1| tFIIH basal transcription factor complex helicase XPB subunit DNA
excision repair protein ERCC-3 [Paenibacillus polymyxa
M1]
Length = 607
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 153/248 (61%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+++G+
Sbjct: 343 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGCERDVFSLIGPKRYDMPWKELERQGW 401
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+V C E+ PM+ + + + + ++ + NP K A + L+ H +G T++
Sbjct: 402 IAQVDCVELRLPMTADLLEQSMRAEGRQQYRIAAENPAKLEAVRSLVEKH--KGIPTLII 459
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G +QSER++ F+ + T+ VSKVA+ + DLP+A
Sbjct: 460 GQYLDQLRKLAQELDVPLITGSMTQSERVRWFDAFR-KGNIQTLLVSKVANFAVDLPDAA 518
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V I++S GSR++EAQRLGRILR K G + A+FY LV++++ EM ++ +RQ FLI
Sbjct: 519 VAIEVSGSFGSRQEEAQRLGRILRPKPG----DNKAYFYALVTENSKEMDFAARRQLFLI 574
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 575 EQGYEYAI 582
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ ++ L+L ++ +SV QW + K + I ++ + K+ +P
Sbjct: 249 AGKTVIGMAVMNRLQCEVLILTSNTISVRQWIEELKQKTNIPVDSIGEYSGQKKEVRP-- 306
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I V TY +++H + + E + M+ L ++WG+++ D+
Sbjct: 307 --ITVATYQILTHRRNKDGEFEH-MKLLSERKWGLIIYDE 343
>gi|345857196|ref|ZP_08809642.1| putative DNA HELICASE ERCC3 [Desulfosporosinus sp. OT]
gi|344329735|gb|EGW41067.1| putative DNA HELICASE ERCC3 [Desulfosporosinus sp. OT]
Length = 569
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 155/251 (61%), Gaps = 8/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED K ++ LIGPK + W L+ +G+
Sbjct: 322 EVHLLPAPVFRATADL-QAKRRLGLTATLVREDGKEDEVFTLIGPKKMDVPWKVLESQGW 380
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E PMS + +Y + + ++ L NP K L+A H R D +V
Sbjct: 381 IATAECMEWRVPMSRDRRMDYALAEEKEKFRLAAENPRKLDKVSELMARH--RDDLVLVI 438
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A +++ P I G T Q ER ++ + F+ + +++ + VSKVA+ + DLP+AN
Sbjct: 439 GQYVRQLEMLARELSAPLITGKTPQRERERLYEEFR-SGRLHCLVVSKVANFAIDLPDAN 497
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K+G E NA+FY+LVS+DT E ++ RQ FL
Sbjct: 498 VAIQVSGTFGSRQEEAQRLGRILRPKQG----EGNAYFYSLVSKDTKEQEFAMHRQLFLT 553
Query: 457 NQGYSYKVITK 467
QGY+YK++ +
Sbjct: 554 EQGYAYKIMIE 564
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+++G+ A ++ L+L + SV+QW + +T + + + +T E K+ C
Sbjct: 228 AGKTVIGMGAMIELQCETLILTTNNSSVKQWLRELSDKTTLEAAQMGEYTGEKKEI---C 284
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +I+H + + + + + WG+++ D+
Sbjct: 285 PVTVATYQIITHRSRGAADFNH-FHLFNEKNWGLIIYDE 322
>gi|358446589|ref|ZP_09157133.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
gi|356607393|emb|CCE55475.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
Length = 543
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ GF
Sbjct: 298 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKELEMSGF 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M+ E Y + R + K+ A + +I H G + ++
Sbjct: 357 IATADCVEVRVDMNAEERMVYATAENRDRYRISATADAKFTAVKEIIGRHA--GQQMLII 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A +++ P I+G TS ++R ++ + F+ + + VSKVA+ S DLPEA
Sbjct: 415 GGYVEQLEDIAKRLDAPLIHGKTSNAQREKLFEAFR-QGDIQVLVVSKVANFSIDLPEAA 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYTLV++D+++ +Y+ RQRFL
Sbjct: 474 VAIQLSGTFGSRQEEAQRLGRLLRPK----ADGGEATFYTLVTRDSIDATYALHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRLL 538
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QW+ + +T ++ I ++ E K+ KP
Sbjct: 205 GAGKTIVGAAAMAKAKATTLILVTNTVAGRQWRDELLRRTTLTENEIGEYSGEKKEIKP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVVTRKTKGEYRA---LELFDSRDWGLVIYDE 298
>gi|25027447|ref|NP_737501.1| DNA helicase [Corynebacterium efficiens YS-314]
gi|259507148|ref|ZP_05750048.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
gi|23492729|dbj|BAC17701.1| putative DNA helicase [Corynebacterium efficiens YS-314]
gi|259165271|gb|EEW49825.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
Length = 557
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEAQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M+ Y +T+ R L K R + ++ H+ G T++
Sbjct: 362 IATADCVEVRTTMTDAERMVYATAETADRYRLAATAHTKTRVVRRILEQHQ--GQPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P + G TS +R ++ F+ + ++N + VSKVA+ S DLPEA
Sbjct: 420 GAYLDQLEELGAEFDAPIVDGKTSNKKRGELFDRFR-SGELNVLVVSKVANFSIDLPEAA 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+DT++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGGEAHFYSVVSRDTLDTEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 535 EQGYAYRII 543
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QWK + +T + I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMARAQATTLILVTNTVAGRQWKDELLRRTTLTEDEIGEYSGERKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K ++A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRRTKGEYKA---LELFDSRDWGLIIYDE 303
>gi|333372011|ref|ZP_08463948.1| DNA repair helicase [Desmospora sp. 8437]
gi|332975087|gb|EGK11992.1| DNA repair helicase [Desmospora sp. 8437]
Length = 569
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED + AD+ LIGPK +E +W E+++ G+
Sbjct: 320 EVHLLPAPVFRATADI-QARRRLGLTATLIREDGREADVFSLIGPKKFEVSWREMEEEGW 378
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ M REY + + NP K + ++ H R + +V
Sbjct: 379 IAKAVCTEIRTGMDDRRRREYEQAAPKNKYRIAAENPEKLSILKEVLERH--REGRVLVI 436
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ P I G T++ ER ++ + F+ K + VSKVA+ + DLP+A+
Sbjct: 437 GQYLSQLREAAAQLKAPLITGETAEGEREKLYERFR-QGKERVLVVSKVANFAVDLPDAS 495
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR KK EE A+FYT+VS+DT++ Y+R RQ FL+
Sbjct: 496 VAVQLSGTFGSRQEEAQRLGRILRPKK----EENEAYFYTIVSRDTLDQEYARNRQLFLM 551
Query: 457 NQGYSYKV 464
+GY Y V
Sbjct: 552 ERGYRYAV 559
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+++G+ V + L+L + SV QW + + +S + +T +AK+ +P
Sbjct: 225 GAGKTVIGMAVMEKVGRATLILTPNTTSVRQWIRELLDKTCLTESEVGEYTGKAKEVRP- 283
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +I++ + R A M ++WG+++ D+
Sbjct: 284 ---VTVATYQIITN-RDREKAALHHMMLFGKRDWGLVIYDE 320
>gi|358461384|ref|ZP_09171548.1| helicase domain protein [Frankia sp. CN3]
gi|357073367|gb|EHI82874.1| helicase domain protein [Frankia sp. CN3]
Length = 545
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 299 EVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWREIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ + Y V + +R + +K+ + L+ H D+ +V
Sbjct: 358 IAPAECTEVRVTLTEDERMSYAVAEPDERYKMCATALSKHGVVERLVRKHS--DDRVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLEMLGRNLDAPVIQGSTRNKERERLFEAFRTG-EITTLVVSKVANVSIDLPEAG 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRSAHFYTVVSRDTLDQEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
>gi|227501402|ref|ZP_03931451.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
gi|227077427|gb|EEI15390.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
Length = 541
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 150/249 (60%), Gaps = 11/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 297 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKELEMAGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M PE Y + R + K RA ++A H++ + ++
Sbjct: 356 IATAECIEVRVDMDPEERMLYATAQPRDRYRIAAQASAKLRAVDKILASHDQ---QALII 412
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ ++ P I G TS ++R ++ Q F+ ++ + VSKVA+ S DLPEA
Sbjct: 413 GGYVDQLRELGEHLDAPVIDGTTSTAKREKLFQQFR-EGELAILVVSKVANFSIDLPEAA 471
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR+LR K E A FYTLV++D+++ Y+ RQRFL
Sbjct: 472 LAIQVSGTFGSRQEEAQRLGRLLRPK------ETEALFYTLVTRDSLDADYAMHRQRFLA 525
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 526 EQGYAYRLM 534
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T + I ++ E K+ KP
Sbjct: 205 AGKTIVGAAAMAKAQSTTLILVTNTVAGRQWRDELLRRTTLSANDIGEYSGEKKEIKP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ + A ++ +++WG+++ D+
Sbjct: 263 --ITIATYQVVTRKTNGEYRA---LELFDSRDWGLIIYDE 297
>gi|374324719|ref|YP_005077848.1| DNA or RNA helicase of superfamily II [Paenibacillus terrae
HPL-003]
gi|357203728|gb|AET61625.1| DNA or RNA helicase of superfamily II [Paenibacillus terrae
HPL-003]
Length = 602
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 151/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+++G+
Sbjct: 338 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGCERDVFSLIGPKRYDMPWKELERQGW 396
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+V C E+ PMS + + ++ + NP K A + L+ H +G T++
Sbjct: 397 IAQVDCVELRLPMSAALLERSMRAEGRQQYRIAAENPAKLEAVRSLMQQH--KGLPTLII 454
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G SQ+ER++ F+ N + T+ VSKVA+ + DLP+A
Sbjct: 455 GQYLDQLRILAQELSVPLITGSMSQAERVRWFDAFR-NGTIRTLLVSKVANFAVDLPDAA 513
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V I++S GSR++EAQRLGRILR K G E A+FY LV++++ E ++ +RQ FLI
Sbjct: 514 VAIEVSGSFGSRQEEAQRLGRILRPKSG----ENKAYFYALVTENSKETDFAARRQLFLI 569
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 570 EQGYEYAI 577
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ ++ L+L ++ SV QW + KL + I ++ + K+ +P
Sbjct: 244 AGKTVIGMAVMERLQCEVLILTSNTTSVRQWIEELKLKTDIPVESIGEYSGQKKEVRP-- 301
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I TY +++H + + E + M+ L ++WG+++ D+
Sbjct: 302 --ITAATYQILTHRRTKDGEFEH-MKLLSERKWGLIVYDE 338
>gi|300781756|ref|ZP_07091610.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
ATCC 33030]
gi|300533463|gb|EFK54524.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
ATCC 33030]
Length = 546
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 301 EVHLLPAPVFRMAADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKELEMAGY 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV +S E Y +T +R + + K L+A H+ G++ ++
Sbjct: 360 IATAECVEVRTALSSEEKMVYATAETRERYRVAACSEGKLGVVDKLLAQHD--GEQILII 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G TS ++R +F+ N ++ T+ VSKVA+ S DLPEA
Sbjct: 418 GAFIEQLEEIAARTGAPLIDGKTSTTKRESTFDSFR-NGELRTLVVSKVANFSIDLPEAA 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+ + A FYT+V +DT++ Y+ +RQRFL
Sbjct: 477 VGIQVSGTFGSRQEEAQRLGRLLRPKE----DGKEALFYTIVVRDTLDAEYAARRQRFLA 532
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 533 EQGYAYRLV 541
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG + + L+L + V+ QW+ + +T I ++ E K+ +P
Sbjct: 208 GAGKTIVGAASMAQAQTTTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGERKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ + ++A ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVVTRKTQGEYKA---LELFDSRDWGLIIYDE 301
>gi|383791881|ref|YP_005476455.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383108415|gb|AFG38748.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 568
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 147/248 (59%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA MFR V +Q+ ++GLTATL+RED + D+ L+GPK Y+ W EL++RG+
Sbjct: 324 EVHLLPAPMFR-VTAEIQAVRRIGLTATLVREDGREGDVFSLVGPKRYDVPWKELEERGW 382
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ P+ E Y + + NP K AT+ LIA H + D +V
Sbjct: 383 IAAAECHEIRLPLPAELKIPYATADKRAKFRIASENPLKIEATRQLIAKHPQ--DAILVI 440
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V LK A ++N P I G T +R +I Q F+ + + I VSKVA+ + DLP+A+
Sbjct: 441 GQYVAQLKKLAAELNAPLITGSTPNQQREEIYQQFR-DGEQRIIVVSKVANFAIDLPDAS 499
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + N F++LVS+ T E +S RQ+FL
Sbjct: 500 MAIQVSGTFGSRQEEAQRLGRILRPK------DRNVLFFSLVSRFTTEEQFSANRQKFLT 553
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 554 EQGYKYHI 561
>gi|306835555|ref|ZP_07468568.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
49726]
gi|304568555|gb|EFM44107.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
49726]
Length = 540
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 151/249 (60%), Gaps = 11/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 297 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKELEMAGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M PE Y + R + K RA ++A H++ + ++
Sbjct: 356 IATAECIEVRVDMDPEERMLYATAQPRDRYRIAAQASAKLRAVDKILASHDQ---QALII 412
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ ++ P I G TS ++R ++ Q F+ ++ + VSKVA+ S DLPEA
Sbjct: 413 GGYVDQLRELGEHLDAPIIDGTTSTAKREKLFQQFR-EGVLSILVVSKVANFSIDLPEAA 471
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR+LR K+ A A FYTLV++D+++ Y+ RQRFL
Sbjct: 472 LAIQVSGTFGSRQEEAQRLGRLLRPKETA------ALFYTLVTRDSLDADYAMHRQRFLA 525
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 526 EQGYAYRLM 534
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T + I ++ E K+ KP
Sbjct: 205 AGKTIVGAAAMAKAQSTTLILVTNTVAGRQWRDELLRRTTLSPNDIGEYSGEKKEIKP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 263 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 297
>gi|333026244|ref|ZP_08454308.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
gi|332746096|gb|EGJ76537.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
Length = 546
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 155/249 (62%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ P+K R T+ L+ H+ G++T+V
Sbjct: 356 IAPADCVEVRVNLTESERLAYATAETEEKYRFCATTPSKQRVTRELVKQHQ--GEQTLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 414 GQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANFSIDLPEAT 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 528
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 529 EQGYAYRIV 537
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 297
>gi|227504269|ref|ZP_03934318.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
gi|227199156|gb|EEI79204.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
Length = 543
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 151/252 (59%), Gaps = 8/252 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED D+ LIGPK Y+A W EL+ G+
Sbjct: 298 EVHLLPAPVFR-MTSDLQSRRRLGLTATLIREDGMEGDVFSLIGPKRYDAPWKELEAAGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M PE Y + R + + K+RA ++A H G + ++
Sbjct: 357 IATADCIEVRVDMDPEERMLYATAQPRDRYRIAASSSTKHRAVDKILAQHA--GQQALII 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ ++ P I G TS ++R ++ Q F+ + + VSKVA+ S DLPEA
Sbjct: 415 GGYVDQLEELGKHLDAPVIDGKTSNAKREKLFQQFR-EGALQILVVSKVANFSIDLPEAA 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR+LR K A+ A FYTLV++D+++ Y+ RQRFL
Sbjct: 474 LAIQVSGTFGSRQEEAQRLGRLLRPK----ADGKEATFYTLVTRDSIDAEYALHRQRFLA 529
Query: 457 NQGYSYKVITKL 468
QGY+Y+++ ++
Sbjct: 530 EQGYAYRLVDEV 541
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + ++ +S I ++ E K+ KP
Sbjct: 206 AGKTIVGAAAMAKTQATTLILVTNTVAGRQWRDELLRRTSLTESEIGEYSGEKKEIKP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 264 --ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 298
>gi|261416532|ref|YP_003250215.1| type III restriction protein res subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|385791387|ref|YP_005822510.1| putative helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|261372988|gb|ACX75733.1| type III restriction protein res subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326811|gb|ADL26012.1| putative helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 591
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 148/251 (58%), Gaps = 6/251 (2%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + T +Q+ +LGLTATL+RED K ++ LIGPK ++ W L+ +G+
Sbjct: 330 EVHLLPAPVFR-LSTEMQATRRLGLTATLVREDHKETEVFSLIGPKKFDIPWRILEAQGW 388
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ PM PE +Y + ++ L NP K + L+ Y + D+ ++
Sbjct: 389 IATADCNEIRIPMDPELKMKYALAPVRDKITLASTNPEKTDIVERLLKYFSKPDDRVLII 448
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P I G T ER ++ F+ + N + VSKV + + DLP+AN
Sbjct: 449 GQYIDQLEALSEDLQIPLITGKTPNKEREKLYGAFRSGAQKN-LMVSKVGNFAIDLPDAN 507
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQIS GSR++EAQRLGR+LR K A A FY++V+QD+ E ++ RQ FL
Sbjct: 508 VLIQISGTFGSRQEEAQRLGRVLRPKSDGGA----AHFYSIVTQDSKEQEFAMNRQLFLT 563
Query: 457 NQGYSYKVITK 467
QGY+YK+I +
Sbjct: 564 EQGYAYKIIKR 574
>gi|288920789|ref|ZP_06415088.1| helicase domain protein [Frankia sp. EUN1f]
gi|288347808|gb|EFC82086.1| helicase domain protein [Frankia sp. EUN1f]
Length = 1446
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 1200 EVHLLPAPVFRMTADI-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWREIEAQGW 1258
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ + Y V + +R + +K + L H GD+ ++
Sbjct: 1259 IAPAECTEVRVTLTDDERMTYAVAEPEERYRMCSTAHSKSAVVRRLAERHA--GDRVLII 1316
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 1317 GAYLDQLDELGRLLDAPVIQGSTRNKERERLFEAFRTG-EITTLVVSKVANVSIDLPEAG 1375
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K ++ +A FYT+VS+DT++ Y+ RQRFL
Sbjct: 1376 VAIQVSGTFGSRQEEAQRLGRVLRPK----SDGRSAHFYTVVSRDTLDQEYAAHRQRFLA 1431
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 1432 EQGYAYTIV 1440
>gi|390453266|ref|ZP_10238794.1| DNA or RNA helicase of superfamily II [Paenibacillus peoriae KCTC
3763]
Length = 585
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+++G+
Sbjct: 321 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGCERDVFSLIGPKRYDMPWKELERQGW 379
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+V C E+ PM+ E + + ++ + NP K A + L+ H G T++
Sbjct: 380 IAQVDCVELRLPMTAELLERSMRAEGRQQYRIAAENPAKLEAVRSLMQRHT--GLPTLII 437
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ P I G SQSER++ F+ + T+ VSKVA+ + DLP+A
Sbjct: 438 GQYLDQLRTLAQELGVPLITGAMSQSERVRWFDAFR-KGTIRTLLVSKVANFAVDLPDAA 496
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ I++S GSR++EAQRLGRILR K G E A+FY LV++++ E ++ +RQ FLI
Sbjct: 497 IAIEVSGSFGSRQEEAQRLGRILRPKPG----ENKAYFYALVTENSRETDFAARRQLFLI 552
Query: 457 NQGYSYKV 464
QGY Y V
Sbjct: 553 EQGYEYAV 560
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ ++ L+L ++ SV QW + K + + I ++ + K+ +P
Sbjct: 227 AGKTVIGMAVMDRLQCEVLILTSNTTSVRQWIEELKQKTDIPVNSIGEYSGQKKEVRP-- 284
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I V TY +++H + + + D M+ L ++WG+++ D+
Sbjct: 285 --ITVATYQILTHRRSKDGDFDH-MKLLSERKWGLIVYDE 321
>gi|375309227|ref|ZP_09774508.1| DNA or RNA helicase of superfamily II [Paenibacillus sp. Aloe-11]
gi|375078536|gb|EHS56763.1| DNA or RNA helicase of superfamily II [Paenibacillus sp. Aloe-11]
Length = 607
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+++G+
Sbjct: 343 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGCERDVFSLIGPKRYDMPWKELERQGW 401
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+V C E+ PM+ E + + ++ + NP K A + L+ H G T++
Sbjct: 402 IAQVDCVELRLPMTAELLERSMRAEGRQQYRIAAENPAKLEAVRSLMQRHS--GLPTLII 459
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ P I G SQSER++ F+ + T+ VSKVA+ + DLP+A
Sbjct: 460 GQYLDQLRILARELGVPLITGAMSQSERVRWFDAFR-KGTIRTLLVSKVANFAVDLPDAA 518
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ I++S GSR++EAQRLGRILR K G E A+FY LV++++ E ++ +RQ FLI
Sbjct: 519 IAIEVSGSFGSRQEEAQRLGRILRPKPG----ENKAYFYALVTENSRETDFAARRQLFLI 574
Query: 457 NQGYSYKV 464
QGY Y V
Sbjct: 575 EQGYEYAV 582
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ ++ L+L ++ SV QW + K + D I ++ + K+ +P
Sbjct: 249 AGKTVIGMAVMDRLQCEVLILTSNTTSVRQWIEELKQKTDIPDDSIGEYSGQKKEVRP-- 306
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I V TY +++H + + + D M+ L ++WG+++ D+
Sbjct: 307 --ITVATYQILTHRRSKDGDFDH-MKLLSERKWGLIVYDE 343
>gi|298242514|ref|ZP_06966321.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555568|gb|EFH89432.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 571
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 152/249 (61%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED + AD+ LIGPK Y+ W EL+++G+
Sbjct: 319 EVHLLPAPVFR-VTAEIQARRRLGLTATLVREDGREADVFSLIGPKKYDVPWRELERQGW 377
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ + E Y + +T ++ L NP K+ T+ L H R D+ ++
Sbjct: 378 IATAECHEIRVSLPDEGQLTYAMAQTREKYRLAAENPAKFTVTRLLSEQH--RDDQVLII 435
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ LK A ++ P + G TS S+R ++ + F+ ++ + VSKVA+ + DLP+AN
Sbjct: 436 GQYLDQLKALAQELQAPLLTGRTSTSQREKLYEQFRQG-QIKRLVVSKVANFAIDLPDAN 494
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAK-KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V IQ+S GSR++EAQRLGRILR K G IA FYT+V++DT + +S RQ FL
Sbjct: 495 VAIQVSGTFGSRQEEAQRLGRILRPKSNGGIAH-----FYTIVTRDTCDQDFSTNRQLFL 549
Query: 456 INQGYSYKV 464
QGY Y +
Sbjct: 550 TEQGYRYSI 558
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 10/106 (9%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ +++ L+L + V+V QW H+ + ++ MI +T E KD
Sbjct: 217 AGKTIVGLVTMADIQRATLILTPNTVAVRQWIHELRAKTSLPPEMIGEYTGERKDI---A 273
Query: 98 GILVTTYSMISHTQKRSWE------ADQT-MQWLQNQEWGIMLLDD 136
+ V+TY M+++ + E AD + L + +WG+++ D+
Sbjct: 274 PVTVSTYQMLTYRRANGEEEGAESLADYPHISLLTSYDWGLIIYDE 319
>gi|379056789|ref|ZP_09847315.1| DNA/RNA helicase [Serinicoccus profundi MCCC 1A05965]
Length = 562
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + +D+ LIGPK ++A W +++ +G+
Sbjct: 303 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKDIEAQGY 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV MS Y V + +R P K L+ H RG T+V
Sbjct: 362 IAPADCVEVRVTMSESMRMAYAVAEPEERYRFAACAPAKDDVVDRLVERH--RGQPTLVI 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + +++ P I G T+ ++R ++ + F+ ++ + VSKVA+ S DLPEA+
Sbjct: 420 GQYLDQLEQLSGRLDAPLITGETTVAQRQELFRQFR-EGEITLLVVSKVANFSIDLPEAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FYTLV++DT++ ++ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRVLRPK----GDGRTAHFYTLVARDTVDAEFAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIV 543
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + VS QW+ + +T + I ++ K+ +P
Sbjct: 210 GAGKTLVGAGAMARSSTTTLILVTNTVSARQWREELLRRTTLTEDEIGEYSGSRKEIRP- 268
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L ++WG++L D+
Sbjct: 269 ---VTIATYQVLTLKRKGIY---PHLDLLDARDWGLILYDE 303
>gi|392945909|ref|ZP_10311551.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
gi|392289203|gb|EIV95227.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
Length = 574
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 299 EVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWREIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ + Y V + +R + +K + L+ H GD+ +V
Sbjct: 358 IAPAECTEVRVTLTDDERMAYAVAEPEERYRMCATAYSKRAVVERLVRRHS--GDRVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGELLGAPVIQGSTRNRERERLFEAFRTG-EITTLVVSKVANVSIDLPEAG 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FYT+V++DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRVLRPK----ADGRAAHFYTVVARDTVDQEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 531 EQGYAYTII 539
>gi|295838136|ref|ZP_06825069.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
gi|295826881|gb|EFG65124.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
Length = 546
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ P+K R T+ L+ H G++T+V
Sbjct: 356 IAPADCVEVRVNLTESERLAYATAETEEKYRFCATTPSKQRVTRELVRQHA--GEQTLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 414 GQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANFSIDLPEAT 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 528
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 529 EQGYAYRIV 537
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 297
>gi|441519118|ref|ZP_21000820.1| putative ATP-dependent DNA helicase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441454011|dbj|GAC58781.1| putative ATP-dependent DNA helicase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 547
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV MS + +Y V + + L +K R + ++ H RG T+V
Sbjct: 358 IAPAECIEVRVTMSDDERLQYAVAEADTKYKLCSTAHSKLRVVRNILEQH--RGQPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER ++ F+ +++T+ VSKVA+ S DLPEA
Sbjct: 416 GAYIDQLEELGRELDAPVIQGSTRNAEREKLFDAFRRG-EISTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGQAHFYSVVSRDSLDADYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|227832581|ref|YP_002834288.1| helicase [Corynebacterium aurimucosum ATCC 700975]
gi|262182936|ref|ZP_06042357.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
gi|227453597|gb|ACP32350.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
Length = 545
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 152/252 (60%), Gaps = 8/252 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 300 EVHLLPAPVFR-MTSDLQSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKELESAGY 358
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M+ E Y + +R + K RA L+ HE G + ++
Sbjct: 359 IATADCVEVRVDMTQEERLLYATAQARERYRIAASASAKLRAVDKLLKKHE--GQQALII 416
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ ++ P I G TS ++R ++ Q F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 417 GAYVAQLEELGEHLDAPVIDGKTSTTKREKLFQQFR-EGELLTLVVSKVANFSIDLPEAA 475
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR+LR KK A FYTLV++++++ Y+ RQRFL
Sbjct: 476 LAIQVSGTFGSRQEEAQRLGRLLRPKKDG----QEATFYTLVARESIDAEYAMHRQRFLA 531
Query: 457 NQGYSYKVITKL 468
QGY+Y+++ ++
Sbjct: 532 EQGYAYRLVDEV 543
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + ++ I ++ E K+ KP
Sbjct: 208 AGKTIVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTSLTPEEIGEYSGEKKEIKP-- 265
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ + +WG+++ D+
Sbjct: 266 --ITIATYQVVTRKTKGEYRA---LELFDSHDWGLIIYDE 300
>gi|296271247|ref|YP_003653879.1| helicase domain-containing protein [Thermobispora bispora DSM
43833]
gi|296094034|gb|ADG89986.1| helicase domain protein [Thermobispora bispora DSM 43833]
Length = 551
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 299 EVHLLPAPIFRMTAEL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKEMESQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R P K R + L+ H G++ ++
Sbjct: 358 IAPAECIEVRVTLTERERLAYAMADPDQRYRFCSTTPAKTRVAEALVRRHA--GEQILII 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L +N P I G T ER ++ Q F+ + ++ + VSKVA+ S DLPEA
Sbjct: 416 GQYVDQLDELGAHLNAPVIKGETRVRERERLFQAFR-DGEIPVLVVSKVANFSIDLPEAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K G A FY++VS+DT++ ++ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPKPGG----GGARFYSIVSRDTVDQEFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 531 EQGYAYRII 539
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG+ A R L+L + VS QWK + + I +T K+ +P
Sbjct: 206 GAGKTIVGIAAMALARATTLILVTNAVSAHQWKRELLRRTALTADEIGEYTGAKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ + + + ++ ++WG+++ D+
Sbjct: 265 ---VTIATYQVMTTKRNGVY---RHLEVFDARDWGLIVYDE 299
>gi|318061807|ref|ZP_07980528.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
gi|318079252|ref|ZP_07986584.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actF]
Length = 546
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ P+K R + L+ H+ G++T+V
Sbjct: 356 IAPADCVEVRVNLTESERLAYATAETEEKYRFCATTPSKQRVARELVKQHQ--GEQTLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 414 GQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANFSIDLPEAT 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 528
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 529 EQGYAYRIV 537
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + LVL + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 AGKTLVGAGAMAEAKATTLVLVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 297
>gi|302520011|ref|ZP_07272353.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
gi|302428906|gb|EFL00722.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
Length = 546
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ P+K R + L+ H+ G++T+V
Sbjct: 356 IAPADCVEVRVNLTESERLAYATAETEEKYRFCATTPSKQRVARELVKQHQ--GEQTLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 414 GQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANFSIDLPEAT 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 528
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 529 EQGYAYRIV 537
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 297
>gi|172041254|ref|YP_001800968.1| helicase [Corynebacterium urealyticum DSM 7109]
gi|171852558|emb|CAQ05534.1| putative helicase [Corynebacterium urealyticum DSM 7109]
Length = 555
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S Y + S + L P K R + L+A H + ++
Sbjct: 362 IAPADCTEVRVQLSESERMVYATAEQSDKYRLAATTPAKNRVVKKLLAMHPE--EPALII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A +++ P I G TS ++R ++ Q F+ + ++ T+ VSKVA+ S DLP A+
Sbjct: 420 GAYVDQLEEIAEELDVPVIDGKTSTAKREKLYQQFR-DGEITTLAVSKVANFSIDLPGAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K + AFFYT+V++DT++ Y+ R RFL
Sbjct: 479 VAIQISGTFGSRQEEAQRLGRILRPKP----DGGGAFFYTVVTRDTLDADYAAHRMRFLA 534
Query: 457 NQGYSYKVI 465
QGY Y ++
Sbjct: 535 EQGYGYGIM 543
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG + + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 210 GAGKTMVGAASMAKAKATTLILVTNTVAGRQWKDELVRRTSLTEDEIGEYSGEKKEIRP- 268
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 ---VTIATYQVVTRKSKGEYRA---LELFDSRDWGLIIYDE 303
>gi|152967555|ref|YP_001363339.1| helicase domain-containing protein [Kineococcus radiotolerans
SRS30216]
gi|151362072|gb|ABS05075.1| helicase domain protein [Kineococcus radiotolerans SRS30216]
Length = 557
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + ++ L + +K R + L+A H G+ T+V
Sbjct: 358 IAPADCVEVRVTLPDAERLAYATAEDDEKYRLCSTSLSKSRVVEKLVAQHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A +++ P I G T+ ER ++ F+ + ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GQYIDQLDDLAARLDAPVIKGETTVKERQRLFDAFR-HGEITTLVVSKVANFSIDLPEAK 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + +A FYT+VS+DT + Y+ RQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRVLRPK----GDHGSARFYTVVSRDTKDQDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|373252226|ref|ZP_09540344.1| helicase domain-containing protein [Nesterenkonia sp. F]
Length = 544
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 149/249 (59%), Gaps = 4/249 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FRR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 294 EVHLLPAPIFRRTADL-QARRRLGLTATLIREDGREREVFSLIGPKRYDAPWKQMESQGW 352
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + EY ++ L K L+A H RG++ +V
Sbjct: 353 IAPADCTEIRVDLPRAVRMEYASAPDREKHRLAAATEAKDDVVARLVARHVHRGEQILVI 412
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ +++ P + G TS + R ++ Q F+ +++ + VSK+A+ S DLP+A+
Sbjct: 413 GQFVEQLQALGERLDAPVLTGSTSTARRQRVFQQFR-EGELDVLVVSKIANFSVDLPQAS 471
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR A E A FY+LV++DT++M Y+ KRQRFL
Sbjct: 472 VAIQVSGTFGSRQEEAQRLGRLLRTD--AADEGKRAHFYSLVARDTVDMDYAAKRQRFLS 529
Query: 457 NQGYSYKVI 465
QGY Y ++
Sbjct: 530 EQGYGYTIL 538
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG L+L NS VS QWK + ++ + I ++ + K+ +P
Sbjct: 201 GAGKTLVGAGVMAVSSTITLILVNSTVSARQWKDELLRRTSLTEDDIGEYSGDRKEVRP- 259
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ KR E ++ L +WG+++ D+
Sbjct: 260 ---VTIATYQVLA--VKRG-ELHPHLELLDQHDWGLIIYDE 294
>gi|254393413|ref|ZP_05008555.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294814127|ref|ZP_06772770.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|326442528|ref|ZP_08217262.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|197707042|gb|EDY52854.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294326726|gb|EFG08369.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 545
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ +K + T+ L+A H RG++T+V
Sbjct: 357 IAPADCVEVRVNLTESERLAYATAETEEKYRFCATTASKRKVTEALVARH--RGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFRAG-EISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIM 538
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVRRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTKRKGIY---PHLELFDSRDWGLIVYDE 298
>gi|86743075|ref|YP_483475.1| helicase-like protein [Frankia sp. CcI3]
gi|86569937|gb|ABD13746.1| helicase-like [Frankia sp. CcI3]
Length = 545
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 299 EVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWREIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA QC EV ++ + Y V + +R + +K + L+ H D+ +V
Sbjct: 358 IAPAQCTEVRVTLTEDERMAYAVAEPEERYRMCATARSKRAVVERLVRQHS--DDRVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGELLDAPVIQGSTRNRERERLFEAFRTG-EITTLVVSKVANVSIDLPEAG 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FYT+V++DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRVLRPK----ADGRTAHFYTVVARDTLDQEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
>gi|357012432|ref|ZP_09077431.1| putative ATP-dependent helicase [Paenibacillus elgii B69]
Length = 564
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED + D+ L+GPK YE W EL+ +G+
Sbjct: 313 EVHLLPAPVFR-VTADIQATRRLGLTATLIREDGREEDVFSLVGPKRYEMPWKELETQGW 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA V+C E+ PM+ + YL ++ +NP K + + L++ H+ G++ ++
Sbjct: 372 IASVECVEIRVPMADKEKEAYLAAAPRHKMREASINPGKLKVVRELLSKHD--GEQILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A P I G ER + F+ + V + VSKVA+ + DLP+A
Sbjct: 430 GQYLEQLHQLAEATKLPMISGEMPYEEREALYSGFR-SGTVPALIVSKVANFAVDLPDAT 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K G A FYTLVS+DT E ++ RQ FLI
Sbjct: 489 VAIQISGSFGSRQEEAQRLGRILRPKAGT----NRAVFYTLVSEDTKEQEFALNRQLFLI 544
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 545 EQGYRYRI 552
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A + L+L ++ SV QWK + + + ++ +T K+ +P
Sbjct: 219 AGKTVIGIAAMGKLNCATLILTSNSTSVRQWKREILDKTDVTEDLVGEYTGMQKEVRP-- 276
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I V TY ++++ + + + M ++WG+++ D+
Sbjct: 277 --ITVATYQILTYRKSKD-DPFVHMDLFNKRDWGLIVYDE 313
>gi|340500260|gb|EGR27154.1| hypothetical protein IMG5_200940 [Ichthyophthirius multifiliis]
Length = 513
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 151/250 (60%), Gaps = 4/250 (1%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E A+ +R + + K+GLTAT RED++I DL +IGPKLYE N EL + G
Sbjct: 230 ETQMSAAETYREIFKQFKFKMKIGLTATPYREDNRITDLFHMIGPKLYEVNISELIQDGH 289
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C M+ E ++ L K ++ Y N K++ YLI HE RGDK +VF
Sbjct: 290 LAKPYCVVFRVKMA-EKAKQLLQEKPQCDVVAYTGNQKKFKLLAYLIKLHEIRGDKILVF 348
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQ-SERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
D++ L+ ++ ++ P I G + E++ L+ F+ +NT+F+S+V DT+ DLP A
Sbjct: 349 CDSIAVLEEFSKRLCYPVICGNVKKLDEKLAWLEMFR-KGHINTLFLSRVGDTALDLPSA 407
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
NVLIQI H GSR+QE QRLGRI+R K+G EYNA+FYT++S+DT + RQ+ L
Sbjct: 408 NVLIQIGFHFGSRKQEVQRLGRIMRRKEGQKG-EYNAYFYTIISKDTRQAQIYYHRQKCL 466
Query: 456 INQGYSYKVI 465
++ G ++VI
Sbjct: 467 VDLGLDFEVI 476
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+G+ +++ LV+C+ + +QWK +F W+ + I T + KD+
Sbjct: 115 AGKTLLGIIVAEKIKRSTLVICDIDTATKQWKTEFLRWTNIKEDKIVIRTGQRKDEIPQN 174
Query: 98 G---ILVTTY---------------SMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139
G IL+TTY + I+ TQ + D T + NQ+WG+ L D+
Sbjct: 175 GEPFILITTYKQLTSVMNRVNNQKKNNINRTQYDEMDRDVT-DIIHNQQWGLCLADETQM 233
Query: 140 VAAK 143
AA+
Sbjct: 234 SAAE 237
>gi|308069695|ref|YP_003871300.1| DNA or RNA helicase of superfamily II [Paenibacillus polymyxa E681]
gi|305858974|gb|ADM70762.1| DNA or RNA helicase of superfamily II [Paenibacillus polymyxa E681]
Length = 607
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+++G+
Sbjct: 343 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGCERDVFSLIGPKRYDMPWKELEQQGW 401
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+V C E+ PM+ E + + ++ + NP K A + L+ H G T++
Sbjct: 402 IAQVDCVELRLPMTAELMERSMRAEGRQQYRIAAENPVKLEAVRSLMQQHS--GLPTLII 459
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ P I G SQ+ER++ F+ + T+ VSKVA+ + DLP+A
Sbjct: 460 GQYLDQLRILAQELGVPLITGSMSQTERVRWFDAFR-KGTIRTLLVSKVANFAVDLPDAA 518
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V I++S GSR++EAQRLGRILR K G E A+FY LV++++ E ++ +RQ FLI
Sbjct: 519 VAIEVSGSFGSRQEEAQRLGRILRPKSG----ENKAYFYALVTENSKETDFAARRQLFLI 574
Query: 457 NQGYSYKV 464
QGY Y V
Sbjct: 575 EQGYEYAV 582
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ ++ L+L ++ SV QW + K + I ++ + K+ +P
Sbjct: 249 AGKTVIGMAVMNRLQCEVLILTSNTTSVRQWVEELKRKTDIPADSIGEYSGQKKEVRP-- 306
Query: 97 CGILVTTYSMISHTQKRSWEAD-QTMQWLQNQEWGIMLLDD 136
I V TY +++H +R+ + D + M+ L ++WG+++ D+
Sbjct: 307 --ITVATYQILTH--RRTKDGDFEHMKLLSERKWGLIIYDE 343
>gi|336180242|ref|YP_004585617.1| helicase domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334861222|gb|AEH11696.1| helicase domain-containing protein [Frankia symbiont of Datisca
glomerata]
Length = 548
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 299 EVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWREIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ + Y V +T +R + +K + L+ H D+ +V
Sbjct: 358 IAPAECTEVRVTLTEDERMAYAVAETEERYRMCATAHSKREVVRRLVQRHA--DDQVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDQLGELLDAPVIQGSTRNRERERLFEAFRTG-EIRTLVVSKVANVSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRGAHFYTVVSRDTIDQEYAAHRQRFLT 530
Query: 457 NQGYSYKVI 465
QGY Y ++
Sbjct: 531 EQGYVYMIV 539
>gi|359413327|ref|ZP_09205792.1| type III restriction protein res subunit [Clostridium sp. DL-VIII]
gi|357172211|gb|EHJ00386.1| type III restriction protein res subunit [Clostridium sp. DL-VIII]
Length = 556
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 151/251 (60%), Gaps = 8/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVHT+PA +FR V +Q+ +LGLTATL+RED K D+ LIGPK Y+ W L+K+G+
Sbjct: 313 EVHTLPAPVFR-VAAEIQATRRLGLTATLVREDGKEDDVFSLIGPKKYDLPWKVLEKQGW 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA QC E+ + E EY V + + + N K + LI +E + DK ++
Sbjct: 372 IAEAQCTEIRVEIPKELKMEYAVSDSKNKFRIASENYKKIDILRDLI--NEHKEDKILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + ++ P I G T ERIQ+ FK +++ + VSKVA+ + DLP+A+
Sbjct: 430 GQYIDQLNLISKELKAPIITGKTKNVERIQLYDKFK-KGEISILIVSKVANFAIDLPDAS 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR KKG + A+FY++V+ D+ E ++ KRQ FL
Sbjct: 489 VAIQVSGTFGSRQEEAQRLGRILRPKKG----DNRAYFYSIVTADSREQEFAVKRQLFLA 544
Query: 457 NQGYSYKVITK 467
QGY Y + T+
Sbjct: 545 EQGYKYYIETR 555
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++ + +++ L+L + +V QWK + ++ I ++ E K+ KP
Sbjct: 219 AGKTVTAMAVMDKIKEETLILTTNITAVRQWKQELIDKMNINEDDIGEYSGEIKEIKP-- 276
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I ++TY +++H + + E M +WG ++ D+
Sbjct: 277 --ITISTYQILTHRKSKIDEFIH-MNIFHENKWGFIIYDE 313
>gi|111226036|ref|YP_716830.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
gi|111153568|emb|CAJ65326.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
Length = 573
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 294 EVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWREIEAQGW 352
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA QC EV ++ + Y V + +R + +K + L+ H D+ +V
Sbjct: 353 IAPAQCTEVRVTLTEDERMTYAVAEPEERYRMCATAHSKRAVVERLVRRHS--DDRVLVI 410
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 411 GAYLDQLDELGELLGAPVIQGSTRNRERERLFEAFRTG-EITTLVVSKVANVSIDLPEAG 469
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FYT+V++DT++ Y+ RQRFL
Sbjct: 470 VAVQVSGTFGSRQEEAQRLGRVLRPK----ADGRAAHFYTVVARDTLDQEYAAHRQRFLA 525
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 526 EQGYAYTIV 534
>gi|311740929|ref|ZP_07714756.1| ATP-dependent DNA helicase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304449|gb|EFQ80525.1| ATP-dependent DNA helicase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 541
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 149/252 (59%), Gaps = 11/252 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 297 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKELEMAGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M E Y + R + K RA ++A H + + ++
Sbjct: 356 IATAECIEVRVDMDAEERMLYATAQPRDRYRIAAQAAAKLRAVDKILARHPQ---QALII 412
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V LK ++ P I G TS ++R ++ Q F+ + + + VSKVA+ S DLPEA
Sbjct: 413 GGYVDQLKELGAHLDAPVIDGSTSTAKRERLFQQFR-DGTLPVLVVSKVANFSIDLPEAA 471
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR+LR K E A FY+LV++D+++ Y+ RQRFL
Sbjct: 472 LAIQVSGTFGSRQEEAQRLGRLLRPK------EEEALFYSLVTRDSLDADYAVHRQRFLA 525
Query: 457 NQGYSYKVITKL 468
QGY+Y++I L
Sbjct: 526 EQGYAYRLIDAL 537
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A L+L + V+ QW+ + +T ++ I ++ E K+ KP
Sbjct: 204 GAGKTIVGAAAMAKAESTTLILVTNTVAGRQWRDELLRRTTLTENEIGEYSGEKKEIKP- 262
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 263 ---ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 297
>gi|326777593|ref|ZP_08236858.1| helicase domain protein [Streptomyces griseus XylebKG-1]
gi|326657926|gb|EGE42772.1| helicase domain protein [Streptomyces griseus XylebKG-1]
Length = 547
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H RG++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVRKH--RGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ N +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-NGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLVVYDE 298
>gi|386385428|ref|ZP_10070717.1| helicase domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
gi|385667118|gb|EIF90572.1| helicase domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
Length = 548
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+A H RG++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVAKH--RGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-QGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMARAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 264 ---VTIATYQVLTTKRKGIY---PHLELFDSRDWGLILYDE 298
>gi|237785046|ref|YP_002905751.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237757958|gb|ACR17208.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 558
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 157/249 (63%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 307 EVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 365
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + S + L + K R + ++A H + T++
Sbjct: 366 IAPAECIEVRSMMTESERMVYATAEKSDKYRLSACSGTKIRVARKIMAQHP--NEPTLII 423
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K+N P I G T +R ++ + F+ + +++T+ VSKVA+ S DLPEA+
Sbjct: 424 GAYIDQLEELSEKLNAPLIDGKTRNKKREELFEQFR-SGEISTLVVSKVANFSIDLPEAS 482
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR++R K+ + +A FYT+VS+DT++ Y+ RQRFL
Sbjct: 483 LAIQVSGTFGSRQEEAQRLGRLMRPKR----DGGSAHFYTVVSRDTIDAEYAAHRQRFLA 538
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 539 EQGYAYRIV 547
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + VS QW+ + +T + I ++ E K+ +P
Sbjct: 215 AGKTMVGAAAMAKSKTTTLILVTNTVSGRQWRDELIRRTTLTEDEIGEYSGEKKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ + + A ++ +++WG+++ D+
Sbjct: 273 --VTIATYQVVTRKTRGEYRA---LELFDSRDWGLIIYDE 307
>gi|182436979|ref|YP_001824698.1| ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465495|dbj|BAG20015.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 547
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H RG++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVRKH--RGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ N +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-NGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLVVYDE 298
>gi|354582460|ref|ZP_09001362.1| type III restriction protein res subunit [Paenibacillus lactis 154]
gi|353199859|gb|EHB65321.1| type III restriction protein res subunit [Paenibacillus lactis 154]
Length = 606
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 151/254 (59%), Gaps = 8/254 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED + D+ LIGPK YE W EL+ +G+
Sbjct: 333 EVHLLPAPVFRATADI-QATRRLGLTATLIREDGREHDVFSLIGPKRYEMPWKELEDQGW 391
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA V C EV PM+ +YL ++ L NP+K L+ H G + ++
Sbjct: 392 IAEVDCLEVKVPMTSHLKEKYLAAGKREQYRLAAENPSKLSTLIRLVERHP--GAQILII 449
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ LK A ++ P I G +Q+ER F+ + + + VSKVA+ + DLP+A+
Sbjct: 450 GQYLDQLKAIADRLQAPLITGRMAQNERHAWYAAFR-SGETRLLVVSKVANFAVDLPDAS 508
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V I++S GSR++EAQRLGR+LR K+G E A FYTLV++D+ E ++ +R+ FLI
Sbjct: 509 VAIEVSGSYGSRQEEAQRLGRLLRPKQG----ENKAHFYTLVTEDSREEFFALRRRMFLI 564
Query: 457 NQGYSYKVITKLAG 470
QGY Y+ +T + G
Sbjct: 565 EQGYEYRTMTVMEG 578
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A ++ L+L ++ SV QW + +T I ++ K+ +P
Sbjct: 239 AGKTVIGMAAMRELQCETLILTSNTTSVRQWVDELLRKTTLTPEDIGEYSGHRKEVRP-- 296
Query: 97 CGILVTTYSMISHTQKRSWEADQT--MQWLQNQEWGIMLLDD 136
+ V TY +++H R + D+ M+ + WG+++ D+
Sbjct: 297 --VTVATYQILTH---RPGKGDEQLHMKLFNERRWGLIIYDE 333
>gi|389862535|ref|YP_006364775.1| DNA helicase, superfamily II [Modestobacter marinus]
gi|388484738|emb|CCH86278.1| Putative DNA helicase, superfamily II [Modestobacter marinus]
Length = 561
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 155/262 (59%), Gaps = 10/262 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFR-LTADLQSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWRDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV + E Y V + +R + +K + ++ H ++ +V
Sbjct: 358 IAPAECIEVRVSLDDEERMTYAVAEPEERYRIAATAQSKLPVIRRVLERHP--DEQKLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T+ +ER ++ Q F++ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGTALDAPVIQGSTTNTERERLFQAFRVG-EIKTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTLDSEYAAHRQRFLA 530
Query: 457 NQGYSYKVI--TKLAGMEEERG 476
QGY+Y ++ LAG E G
Sbjct: 531 EQGYAYTIVDAADLAGPGEVNG 552
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWK + ++ + I ++ E K+ +P
Sbjct: 207 AGKTLVGAAAMAEAKATTLILVTNTVSGRQWKRELIARTSLTEEEIGEYSGERKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ +K + + + Q+WG+++ D+
Sbjct: 265 --VTIATYQVITTRRKGEY---RHLDLFDAQDWGLIVYDE 299
>gi|183221905|ref|YP_001839901.1| putative DNA repair helicase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911974|ref|YP_001963529.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776650|gb|ABZ94951.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780327|gb|ABZ98625.1| Putative DNA repair helicase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 565
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELEAKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ PM + +Y V ++ L NP K RA Y++ H + +V
Sbjct: 368 IAEANCVEIRVPMEDDLRMKYSVADDREKFRLASENPEKLRAISYILKKHST--NNILVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T ER ++ Q F+ ++ + VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISNTFKIPLITGKTPLPERQELYQAFRTG-QIKQLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K A++ A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----AQDNTAIFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + +S I ++ E K+ KP
Sbjct: 215 AGKTIVGMGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPESDIGEYSGEMKEIKP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHIFSANN-WGLIVYDE 309
>gi|379734135|ref|YP_005327640.1| putative DNA helicase, superfamily II [Blastococcus saxobsidens
DD2]
gi|378781941|emb|CCG01595.1| Putative DNA helicase, superfamily II [Blastococcus saxobsidens
DD2]
Length = 561
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 155/262 (59%), Gaps = 10/262 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFR-LTADLQSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKDIESQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV + E Y V + +R + +K + ++ H ++ +V
Sbjct: 358 IAPAECVEVRVSLDDEERMTYAVAEPEERYRIAATAQSKLPVIRRVLERHPE--EQKLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T+ ER ++ Q F++ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLEELGTALDAPVIQGSTTNKERERLFQAFRVG-EIKTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTLDSEYAAHRQRFLA 530
Query: 457 NQGYSYKVI--TKLAGMEEERG 476
QGY+Y ++ LAG E G
Sbjct: 531 EQGYAYTIVDAADLAGPGEVNG 552
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWK + ++ + I ++ E K+ +P
Sbjct: 207 AGKTLVGAAAMAEAKATTLILVTNTVSGRQWKRELIARTSLTEEEIGEYSGERKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ +K + + + Q+WG+++ D+
Sbjct: 265 --VTIATYQVITTRRKGEY---RHLDLFDAQDWGLIVYDE 299
>gi|334134816|ref|ZP_08508318.1| helicase C-terminal domain protein [Paenibacillus sp. HGF7]
gi|333607660|gb|EGL18972.1| helicase C-terminal domain protein [Paenibacillus sp. HGF7]
Length = 565
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED + D+ LIGPKL++ W L++ G+
Sbjct: 313 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGREEDVFSLIGPKLFDMPWKRLEQEGW 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IARV C EV M + Y R + N K+ A L+A H+ G+ ++
Sbjct: 372 IARVTCTEVGVEMETGELQNYYEADKRSRFRIAGENSRKFLALTRLLARHD--GEAILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ LK A K+ P I G Q +R ++ + F V + VSKVA+ + DLP+A+
Sbjct: 430 GQYLDQLKEVARKLTIPLITGEMPQVDRQRLYEAFNTG-LVRILAVSKVANFAVDLPDAS 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR KKG AFFYTLVS+ T E Y+ KR+ FL+
Sbjct: 489 VAIQLSGSYGSRQEEAQRLGRILRPKKG----RNEAFFYTLVSRGTSEQEYALKRRIFLL 544
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 545 EQGYEYRI 552
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-DKPM 95
AGK+++G+ A + AL+L + SV QW + ++ D+S + ++ + K +P
Sbjct: 218 GAGKTVIGIAALTKLSCAALILTTNVTSVRQWIKEILGKTSLDESRVGEYSGDIKLVRP- 276
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++H +++ E M+ +++WG+++ D+
Sbjct: 277 ---VTIATYQILTHRREKGGEQAH-MELFNSRDWGLIIYDE 313
>gi|271970086|ref|YP_003344282.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270513261|gb|ACZ91539.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 548
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ ++GLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRVGLTATLVREDGREGDVFSLIGPKRYDAPWKEMENQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ + Y + ++ +R P+K R T+ L+ H ++ +V
Sbjct: 358 IAPADCVEVRVTLTDDERLAYAMAESEERYRFCATTPSKSRVTEALVRRH--LDEQVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G T ER ++ Q F+ + ++ + VSKVA+ S DLPEA
Sbjct: 416 GQYIDQLDELGEHLNAPVIKGETKVKERERLFQAFR-DKEIQVLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+DT++ ++ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGGGARFYSVVSRDTVDQDFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 531 EQGYAYQII 539
>gi|296138541|ref|YP_003645784.1| type III restriction protein res subunit [Tsukamurella
paurometabola DSM 20162]
gi|296026675|gb|ADG77445.1| type III restriction protein res subunit [Tsukamurella
paurometabola DSM 20162]
Length = 556
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ +Y + +R L P K + ++ H RG +T+V
Sbjct: 360 IAPADCVEVRVTLTENQRMQYATAEPDERYKLASTAPAKSAVVKAILERH--RGAQTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T ER + F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYIDQLEELGAALDAPVIQGSTKTKEREALFDAFRRG-EISTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGTAHFYSVVSRDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 533 EQGYAYRIV 541
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 209 AGKTMVGAAAMARAQATTLILVTNTVAGRQWKRELLARTSLTEEEIGEYSGEKKEIRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + + +++WG+M+ D+
Sbjct: 267 --VTIATYQVLTRKSKGEY---KNLDLFDSRDWGLMIYDE 301
>gi|375139772|ref|YP_005000421.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359820393|gb|AEV73206.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 549
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y V + +R L +K + ++ H +GD+T+V
Sbjct: 358 IAPAECIEVRVTMTDNERMLYAVAEPDERYKLCSTVHSKIAVVKSILEKH--KGDQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T +ER + F+ ++ T+ VSKVA+ S DLPEAN
Sbjct: 416 GAYLDQLDELGTELNAPVIQGSTKTAEREALFDEFRRG-EIPTLVVSKVANFSIDLPEAN 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
>gi|444431450|ref|ZP_21226617.1| putative ATP-dependent DNA helicase [Gordonia soli NBRC 108243]
gi|443887859|dbj|GAC68338.1| putative ATP-dependent DNA helicase [Gordonia soli NBRC 108243]
Length = 555
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ E +Y V + ++ L K + ++A H +G T+V
Sbjct: 358 IAPADCVEVRVTLTDEERLQYAVAEAEEKYKLCSTAHTKVNVVKSILARH--KGSPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDAPVIQGSTKNKEREVLFDRFR-SGEIQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR KK + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKK----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A T + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTMVGAAAMATAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + + +++WG+++ D+
Sbjct: 265 ---VTIATYQVMTRKSKGEY---KNLDLFDSRDWGLIIYDE 299
>gi|282853546|ref|ZP_06262883.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|386071008|ref|YP_005985904.1| DEAD/DEAH box helicase [Propionibacterium acnes ATCC 11828]
gi|422458408|ref|ZP_16535062.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|422465393|ref|ZP_16541996.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
gi|422468857|ref|ZP_16545388.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|282582999|gb|EFB88379.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|314982316|gb|EFT26409.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|315092642|gb|EFT64618.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
gi|315104630|gb|EFT76606.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|353455374|gb|AER05893.1| DEAD/DEAH box helicase [Propionibacterium acnes ATCC 11828]
Length = 552
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 9/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S + + R + P K + + L+ H RG T+V
Sbjct: 360 IAPADCVEVRVSLSESARMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP A
Sbjct: 418 GQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLPSAE 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQRFL
Sbjct: 477 VAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQRFLA 531
Query: 457 NQGYSYKVI 465
QGYSY++I
Sbjct: 532 EQGYSYRII 540
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|429729359|ref|ZP_19264022.1| helicase protein [Corynebacterium durum F0235]
gi|429149767|gb|EKX92735.1| helicase protein [Corynebacterium durum F0235]
Length = 553
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGLEGDVFSLIGPKRYDAPWKDIEAQGY 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + S R L K + + L+ H +G+ T+V
Sbjct: 360 IAAAECVEVRVTMTKAERMAYATAERSVRYRLAACAETKNKVVKKLVEQH--KGEPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G TS +R ++ F+ +N + VSKVA+ S DLPEA
Sbjct: 418 GAYIDQLEELGGILDAPVIDGKTSNKKREELFDAFR-KGTLNVLVVSKVANFSIDLPEAA 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A A FYT+VS+DT++ Y+ RQRFL
Sbjct: 477 VAIQVSGTFGSRQEEAQRLGRLLRPK----ANGREALFYTVVSRDTLDTEYAAHRQRFLA 532
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 533 EQGYAYRIV 541
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QW+ + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRDELLRRTSLTEEEIGEYSGEKKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 301
>gi|422577080|ref|ZP_16652617.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
gi|314922095|gb|EFS85926.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
Length = 552
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 9/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S + + R + P K + + L+ H RG T+V
Sbjct: 360 IAPADCVEVRVSLSESARMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP A
Sbjct: 418 GQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLPSAE 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQRFL
Sbjct: 477 VAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQRFLA 531
Query: 457 NQGYSYKVI 465
QGYSY++I
Sbjct: 532 EQGYSYRII 540
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|422389943|ref|ZP_16470040.1| DNA repair helicase RAD25 [Propionibacterium acnes HL103PA1]
gi|422463969|ref|ZP_16540582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|422566280|ref|ZP_16641919.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|314965180|gb|EFT09279.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|315093939|gb|EFT65915.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|327329470|gb|EGE71230.1| DNA repair helicase RAD25 [Propionibacterium acnes HL103PA1]
Length = 552
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 9/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S + + R + P K + + L+ H RG T+V
Sbjct: 360 IAPADCVEVRVSLSESARMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP A
Sbjct: 418 GQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLPSAE 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQRFL
Sbjct: 477 VAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQRFLA 531
Query: 457 NQGYSYKVI 465
QGYSY++I
Sbjct: 532 EQGYSYRII 540
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|158312038|ref|YP_001504546.1| helicase domain-containing protein [Frankia sp. EAN1pec]
gi|158107443|gb|ABW09640.1| helicase domain protein [Frankia sp. EAN1pec]
Length = 545
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADI-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ + Y V + +R + +K + L+ H D+ +V
Sbjct: 358 IAPAECTEVRVTLTDDERMTYAVAEPEERYKVCSTAHSKNLVVRRLVERHA--DDRVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ + F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGRLLDAPVIQGSTRNKERERLFEAFRTG-EITTLVVSKVANVSIDLPEAG 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRSAHFYTVVSRDTLDQEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
>gi|408793028|ref|ZP_11204638.1| type III restriction enzyme, res subunit [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408464438|gb|EKJ88163.1| type III restriction enzyme, res subunit [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 565
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELEAKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ PM + +Y V ++ L NP K RA Y++ H + +V
Sbjct: 368 IAEANCVEIRVPMEDDLRMKYSVADDREKFRLASENPEKLRAISYILKKHST--NNILVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T ER ++ Q F+ + ++ + VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISNTFKIPLITGKTPLPERQELYQAFR-SGQIKQLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K +++ A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----SQDNTAIFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + +S I ++ E K+ KP
Sbjct: 215 AGKTIVGMGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPESDIGEYSGELKEIKP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHIFSANN-WGLIVYDE 309
>gi|302535925|ref|ZP_07288267.1| ATP-dependent DNA helicase [Streptomyces sp. C]
gi|302444820|gb|EFL16636.1| ATP-dependent DNA helicase [Streptomyces sp. C]
Length = 547
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H RG++T+V
Sbjct: 357 IAPADCVEVRVNLTESERLAYATAETEEKYRFCATTATKRKVTEALVRKH--RGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ ++N + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFNAFR-EGEINVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIM 538
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAKAKATTLILVTNTVSARQWKHELVRRTSLTEEEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLILYDE 298
>gi|449685455|ref|XP_004210899.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Hydra magnipapillata]
Length = 526
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/99 (77%), Positives = 87/99 (87%)
Query: 254 DLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNP 313
DLNFLIGPKLYEANW+ELQ G++ARVQCAEVWCPMSPEFYREYL + KR L YVMNP
Sbjct: 428 DLNFLIGPKLYEANWMELQNNGYLARVQCAEVWCPMSPEFYREYLSIPSRKRSLFYVMNP 487
Query: 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNK 352
NK+RA ++LI +HERR DK IVF+DNVFALKHYAVK+NK
Sbjct: 488 NKFRACEFLIRFHERRNDKIIVFADNVFALKHYAVKLNK 526
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 80/98 (81%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVGVTA CTVRK+ LVLC SGVSVEQWK QFKLW+ DD ICRFTS+ KDKP+ C
Sbjct: 302 AGKTLVGVTAACTVRKKCLVLCTSGVSVEQWKSQFKLWANIDDKHICRFTSDTKDKPVDC 361
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLD 135
+ VTTYSMI+HT KRS+E+ M +L+N EWG+MLLD
Sbjct: 362 HLAVTTYSMIAHTMKRSYESTLIMDFLKNTEWGLMLLD 399
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 61/80 (76%)
Query: 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHI 215
DE+GAKDYR + LK DH+SRPLWVAP+GHIFLESFS VY+HAHDFLI IAEPVCRP+ I
Sbjct: 63 DEYGAKDYRKIVSLKADHQSRPLWVAPDGHIFLESFSAVYKHAHDFLITIAEPVCRPKFI 122
Query: 216 HEVHTIPAKMFRRVLTIVQS 235
HE ++ V +Q+
Sbjct: 123 HEYKLTAYSLYAAVSVGLQT 142
>gi|213966421|ref|ZP_03394599.1| DNA or RNA helicase of superfamily II [Corynebacterium amycolatum
SK46]
gi|213950941|gb|EEB62345.1| DNA or RNA helicase of superfamily II [Corynebacterium amycolatum
SK46]
Length = 567
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 307 EVHLLPAPVFR-MSADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 365
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + S R L P K + ++A HE G+ +V
Sbjct: 366 IAPADCVEVRVTPTESERMLYATAEASDRYRLAATTPTKIPVVKQILARHE--GEPALVI 423
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ I G TS ++R ++ F+ ++NT+ VSKVA+ S DLPEA+
Sbjct: 424 GAYLDQLEEIGEELGVDVIEGKTSNAKREELFGKFRRG-EINTLVVSKVANFSIDLPEAS 482
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +QIS GSR++EAQRLGR+LR K ++ A FY++V++DT++ Y+ RQRFL
Sbjct: 483 VAVQISGTFGSRQEEAQRLGRLLRPK----SDGGGAVFYSVVTRDTLDTEYAAHRQRFLA 538
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 539 EQGYAYRIV 547
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A ++ L+L + V+ QW+ + ++ + I ++ E K+ +P
Sbjct: 214 GAGKTIVGAAAMVDAQRTTLILVTNTVAGRQWRDELLRRTSLTEDEIGEYSGEKKEIRP- 272
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 273 ---VTIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 307
>gi|255325614|ref|ZP_05366713.1| DNA or RNA helicase of superfamily II [Corynebacterium
tuberculostearicum SK141]
gi|255297327|gb|EET76645.1| DNA or RNA helicase of superfamily II [Corynebacterium
tuberculostearicum SK141]
Length = 541
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 148/252 (58%), Gaps = 11/252 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W EL+ G+
Sbjct: 297 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKELEMAGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M E Y + R + K A ++A H + + ++
Sbjct: 356 IATAECIEVRVDMDAEERMLYATAQPRDRYRIAAQAAAKLHAVDKILARHPQ---QALII 412
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V LK ++ P I G TS ++R ++ Q F+ + + + VSKVA+ S DLPEA
Sbjct: 413 GGYVDQLKELGAHLDAPVIDGSTSTAKRERLFQQFR-DGTLPVLVVSKVANFSIDLPEAA 471
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR+LR K E A FY+LV++D+++ Y+ RQRFL
Sbjct: 472 LAIQVSGTFGSRQEEAQRLGRLLRPK------EEEALFYSLVTRDSLDADYAVHRQRFLA 525
Query: 457 NQGYSYKVITKL 468
QGY+Y++I L
Sbjct: 526 EQGYAYRLIDAL 537
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A L+L + V+ QW+ + +T ++ I ++ E K+ KP
Sbjct: 204 GAGKTIVGAAAMAKAESTTLILVTNTVAGRQWRDELLRRTTLTENEIGEYSGEKKEIKP- 262
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ K + A ++ +++WG+++ D+
Sbjct: 263 ---ITIATYQVVTRKTKGEYRA---LELFDSRDWGLIIYDE 297
>gi|433456109|ref|ZP_20414167.1| helicase domain-containing protein [Arthrobacter crystallopoietes
BAB-32]
gi|432196698|gb|ELK53134.1| helicase domain-containing protein [Arthrobacter crystallopoietes
BAB-32]
Length = 553
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 303 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDAREGEVFSLIGPKRYDAPWKDIEAQGY 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + + + L + K + L+A H RG++ +V
Sbjct: 362 IAPADCVEVRVDLPRDERVAYAMADDADKYRLCAASDTKSGVVEQLVAAH--RGEQLLVI 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A +++ P I G TS ER ++ F+ ++T+ VSKVA+ S DLPEA+
Sbjct: 420 GQYIDQLDDLAQRLDAPVIKGGTSVKERQRLFDEFRAG-SIHTLVVSKVANFSIDLPEAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+V++DT++ ++ KRQRFL
Sbjct: 479 VAIQVSGSFGSRQEEAQRLGRLLRPK----ADGRAARFYTVVARDTLDQDFAAKRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 535 EQGYAYTIM 543
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A T L+L + VS QWK + +T + I ++ K+ +P
Sbjct: 211 AGKTLVGAAAMATSSTTTLILVTNTVSARQWKDELLRRTTLREDEIGEYSGAVKEVRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ + + ++ + +WG+++ D+
Sbjct: 269 --VTIATYQVLTMRRGGIYP---HLELVDGHDWGLIIYDE 303
>gi|395203324|ref|ZP_10394558.1| DEAD/DEAH box helicase [Propionibacterium humerusii P08]
gi|328908278|gb|EGG28037.1| DEAD/DEAH box helicase [Propionibacterium humerusii P08]
Length = 580
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 150/252 (59%), Gaps = 15/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 332 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWREIEAQGW 390
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K R + L+ H RG T
Sbjct: 391 IAPADCVEVRVSLSES---DRMTCAMAEPDVRYRMAATLPIKNRVVRDLVERH--RGQPT 445
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ V L+ A ++ P I G T+ + R + Q+F+ +V+ + VSKVA+ S DLP
Sbjct: 446 LIIGQYVDQLEELATELKCPIITGSTTPTRRQETYQDFR-EGRVDLLVVSKVANFSIDLP 504
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K G +A FY +VS+DT++ ++ RQR
Sbjct: 505 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----FYAVVSRDTVDADFASHRQR 559
Query: 454 FLINQGYSYKVI 465
FL QGYSY++I
Sbjct: 560 FLAEQGYSYRII 571
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG TA R L+L + VS QWK + ++ I ++ K +P
Sbjct: 240 AGKTIVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLTPDEIGEYSGSRKQVRP-- 297
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 298 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 332
>gi|422441473|ref|ZP_16518282.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422472803|ref|ZP_16549284.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|422573218|ref|ZP_16648783.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|313835461|gb|EFS73175.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314928522|gb|EFS92353.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314970456|gb|EFT14554.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
Length = 549
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 150/252 (59%), Gaps = 15/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWREIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K R + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMTCAMAEPDVRYRMAATLPIKNRVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ V L+ A ++ P I G T+ + R + Q+F+ +V+ + VSKVA+ S DLP
Sbjct: 415 LIIGQYVDQLEELATELKCPIITGSTTPTRRQETYQDFR-EGRVDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----FYAVVSRDTVDADFASHRQR 528
Query: 454 FLINQGYSYKVI 465
FL QGYSY++I
Sbjct: 529 FLAEQGYSYRII 540
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG TA R L+L + VS QWK + ++ I ++ K +P
Sbjct: 209 AGKTIVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLTPDEIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|68535479|ref|YP_250184.1| helicase [Corynebacterium jeikeium K411]
gi|68263078|emb|CAI36566.1| putative helicase [Corynebacterium jeikeium K411]
Length = 548
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIESQGW 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + S + L P K + + ++ H + T++
Sbjct: 362 IAPADCTEVRVQLTEAERMVYATAEQSDKYRLAATTPTKTKVVRKIMDMHP--DEPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G T ++R ++ Q F+ + ++ T+ VSKVA+ S DLP A+
Sbjct: 420 GAYIDQLEEIAEELDVPVIDGKTGNAKREKLYQQFR-DGELKTLVVSKVANFSIDLPGAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K AFFY++V++DT++ Y+ RQRFL
Sbjct: 479 VAIQISGTFGSRQEEAQRLGRILRPKPDG----GGAFFYSIVARDTLDADYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY Y+++
Sbjct: 535 EQGYGYRIV 543
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG + + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 210 GAGKTMVGAASMAKAKATTLILVTNTVAGRQWKDELVRRTSLTEDEIGEYSGEKKEIRP- 268
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 ---VTIATYQVVTRKSKGEYRA---LELFDSRDWGLIIYDE 303
>gi|260579780|ref|ZP_05847634.1| helicase domain protein, partial [Corynebacterium jeikeium ATCC
43734]
gi|258602081|gb|EEW15404.1| helicase domain protein [Corynebacterium jeikeium ATCC 43734]
Length = 362
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 117 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIESQGW 175
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + S + L P K + + ++ H + T++
Sbjct: 176 IAPADCTEVRVQLTEAERMVYATAEQSDKYRLAATTPTKTKVVRKIMDMHP--DEPTLII 233
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G T ++R ++ Q F+ + ++ T+ VSKVA+ S DLP A+
Sbjct: 234 GAYIDQLEEIAEELDVPVIDGKTGNAKREKLYQQFR-DGELKTLVVSKVANFSIDLPGAS 292
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K + AFFY++V++DT++ Y+ RQRFL
Sbjct: 293 VAIQISGTFGSRQEEAQRLGRILRPKP----DGGGAFFYSIVARDTLDADYAAHRQRFLA 348
Query: 457 NQGYSYKVI 465
QGY Y+++
Sbjct: 349 EQGYGYRIV 357
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG + + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 24 GAGKTMVGAASMAKAKATTLILVTNTVAGRQWKDELVRRTSLTEDEIGEYSGEKKEIRP- 82
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 83 ---VTIATYQVVTRKSKGEYRA---LELFDSRDWGLIIYDE 117
>gi|411007738|ref|ZP_11384067.1| ATP-dependent DNA helicase [Streptomyces globisporus C-1027]
Length = 547
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H RG++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVRKH--RGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-QGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLVVYDE 298
>gi|239989681|ref|ZP_04710345.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
11379]
gi|291446696|ref|ZP_06586086.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291349643|gb|EFE76547.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 547
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H RG++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVRKH--RGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-QGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLVVYDE 298
>gi|291303533|ref|YP_003514811.1| type III restriction protein res subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290572753|gb|ADD45718.1| type III restriction protein res subunit [Stackebrandtia
nassauensis DSM 44728]
Length = 549
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + AD+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRFSADL-QTRRRLGLTATLVREDGREADVFSLIGPKRYDAPWRDVESQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y VC+ + R K A + ++ H +G++ +V
Sbjct: 358 IAPAECTEVRVTLTDAERMAYAVCEETDRYRAAATMDAKLDAVESIVGKH--KGERVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + ++ P + G T +R ++ F+ + ++ T+ VSKV + S DLPEA
Sbjct: 416 GAYLDQLEDLSKHLDAPVVQGSTRTKQREELFAAFR-SGELTTLIVSKVGNFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K ++ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRILRPK----SDGRGAHFYTVVSRDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG +K L+L + VSV QW+ + +T + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAVMAQAQKTTLILVTNTVSVHQWRRELLARTTLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + + ++WG+++ D+
Sbjct: 265 ---VTIATYQVMTARSKGEF---RHLDLFDARDWGLIVYDE 299
>gi|377562511|ref|ZP_09791902.1| putative ATP-dependent DNA helicase [Gordonia otitidis NBRC 100426]
gi|441508856|ref|ZP_20990778.1| putative ATP-dependent DNA helicase [Gordonia aichiensis NBRC
108223]
gi|377520337|dbj|GAB37067.1| putative ATP-dependent DNA helicase [Gordonia otitidis NBRC 100426]
gi|441446861|dbj|GAC48739.1| putative ATP-dependent DNA helicase [Gordonia aichiensis NBRC
108223]
Length = 555
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ E +Y V + ++ L K + ++A H G +T+V
Sbjct: 358 IAPADCIEVRVTLTDEERLQYAVAENEEKYKLCSTAHTKVNVVKSILAKHA--GSQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR KK + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKK----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|441519737|ref|ZP_21001409.1| putative ATP-dependent DNA helicase [Gordonia sihwensis NBRC
108236]
gi|441460490|dbj|GAC59370.1| putative ATP-dependent DNA helicase [Gordonia sihwensis NBRC
108236]
Length = 550
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ +Y V + ++ L +K R + ++ H R +T+V
Sbjct: 358 IAPAECIEVRVTMTDSERLQYAVAEPEEKYKLCSTAHSKIRVVRSILERH--RDSQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDAPVIQGSTRNAEREKLFDAFRRG-ELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGQAHFYSVVSRDSLDADYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|116669352|ref|YP_830285.1| helicase domain-containing protein [Arthrobacter sp. FB24]
gi|116609461|gb|ABK02185.1| helicase domain protein [Arthrobacter sp. FB24]
Length = 551
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + + + + L + K + L+ H RG++ +V
Sbjct: 358 IAPADCVEVRVDLPHDERVAYAMAEDADKYRLCATSETKTAVVEQLVEQH--RGEQLLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ER ++ F++ +V T+ VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDELGERLQAPVIKGDTSVKERQKLFAAFRIG-EVQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+ A A FY+LV++DT++ ++ KRQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPKQDGRA----ARFYSLVARDTLDQDFAAKRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIM 539
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A T L+L + VS QWK + ++ I ++ K+ +P
Sbjct: 207 AGKTLVGAAAMATSSTTTLILVTNTVSARQWKDELVKRTSLTADEIGEYSGSVKEVRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++ T KR ++ + +WG+++ D+
Sbjct: 265 --VTIATYQVL--TTKRGGLYPH-LELVDGHDWGLIIYDE 299
>gi|377564040|ref|ZP_09793368.1| putative ATP-dependent DNA helicase [Gordonia sputi NBRC 100414]
gi|377528930|dbj|GAB38533.1| putative ATP-dependent DNA helicase [Gordonia sputi NBRC 100414]
Length = 558
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ E +Y V + ++ L K + ++A H G T+V
Sbjct: 361 IAPADCVEVRVTLTDEERLQYAVAENEEKYKLCSTAHTKVNVVKSILAKHA--GSPTLVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 419 GAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANFSIDLPEAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR KK + A FY++VS+DT++ Y+ RQRFL
Sbjct: 478 VAVQVSGTFGSRQEEAQRLGRLLRPKK----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 533
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 534 EQGYAYRI 541
>gi|227487728|ref|ZP_03918044.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092230|gb|EEI27542.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 555
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDLEAQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M+ Y +++ R L K + L+ H + T++
Sbjct: 362 IASAECVEIRVTMTESERMVYATAESADRYRLATNASGKMSVLKQLVKMHA--DEPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G TS +R ++ F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 420 GAYIDQLEEIGEAIGAPVIEGKTSTKKREELFDKFR-SGEITTLVVSKVANFSIDLPEAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FY++V++DT++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGGSATFYSIVTRDTLDAHYAAHRQRFLA 534
Query: 457 NQGYSYK 463
QGY+Y+
Sbjct: 535 EQGYAYR 541
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A ++ L+L + V+ QW+ + +T + I ++ E K+ +P
Sbjct: 211 AGKTIVGAAAMAKLKTTTLILVTNTVAGRQWRDELLRRTTLTEDEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + ++++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEY---RSLELFDSRDWGLIIYDE 303
>gi|119961251|ref|YP_946800.1| ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
gi|403526036|ref|YP_006660923.1| DNA repair helicase RAD25 [Arthrobacter sp. Rue61a]
gi|119948110|gb|ABM07021.1| putative ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
gi|403228463|gb|AFR27885.1| putative DNA repair helicase RAD25 [Arthrobacter sp. Rue61a]
Length = 552
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + + + + L + K + + L+A H +G++ +V
Sbjct: 358 IAPADCVEVRVDLPRDERVAYAMAEDADKYRLCATSETKTKLVEELVAVH--KGEQLLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A +++ P I G TS R ++ F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDEIAERLDAPLIKGETSVKARQKLFDAFR-KGEIHTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+ A A FY+LV++DT++ ++ KRQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPKQDGRA----ARFYSLVARDTLDQDFAAKRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIM 539
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A T L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 206 GAGKTLVGAAAMATSSTTTLILVTNTVSARQWKDELLKRTSLTEDEIGEYSGAVKEVRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++ T KR ++ + +WG+++ D+
Sbjct: 265 ---VTIATYQVL--TTKRGGLYPH-LELVDGHDWGLIIYDE 299
>gi|430750411|ref|YP_007213319.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430734376|gb|AGA58321.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 568
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P +FR + +Q+ +LGLTATL+RED + D+ LIGPK ++ W L+ +G+
Sbjct: 312 EVHLLPVPVFR-MTADLQAKRRLGLTATLVREDGREEDVFSLIGPKRFDLFWKTLEAKGW 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IARV C E+ P+ P EY R+ + NP K R + L+A H RG + ++
Sbjct: 371 IARVTCTEIRVPLDPSAAAEYAAAGQRARIRIAAENPAKLRVVRELLALH--RGRQVLII 428
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ LK A + P I G T ER ++ F+ + + + VSKVA+ + DLP+A
Sbjct: 429 GQYLRQLKQMAAAWDVPLITGETGLDERDRLYARFR-SGEEPVLIVSKVANLAVDLPDAA 487
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQR+GRI+R K G+ +FYT+V++ T E Y+R+RQ FL
Sbjct: 488 VAVQVSGSYGSRQEEAQRIGRIMRPKPGS----NECWFYTVVTEGTKETEYARRRQLFLA 543
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 544 EQGYAYRIM 552
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFT-SEAKDKPM 95
AGK++VG+ A +R AL+L S SV+QW+ + +T + I + SE + +P
Sbjct: 217 GAGKTIVGIAALARLRCEALILTPSVTSVQQWRSELLDKTTLTERDIGVYAGSERQVRP- 275
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TYS+++ ++ E + M ++WG+++ D+
Sbjct: 276 ---VTIATYSILTCRNSKT-EDYRHMILFSERDWGLIIYDE 312
>gi|227542367|ref|ZP_03972416.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181565|gb|EEI62537.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 555
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDLEAQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M+ Y +++ R L K + L+ H + T++
Sbjct: 362 IASAECVEIRVTMTESERMVYATAESADRYRLATNASGKMSVLKQLVKMHA--DEPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G TS +R ++ F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 420 GAYIDQLEEIGEAIGAPVIEGKTSTKKREELFDKFR-SGEITTLVVSKVANFSIDLPEAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ +A FY++V++DT++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGGSATFYSIVTRDTLDAHYAAHRQRFLA 534
Query: 457 NQGYSYK 463
QGY+Y+
Sbjct: 535 EQGYAYR 541
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A ++ L+L + V+ QW+ + +T + I ++ E K+ +P
Sbjct: 211 AGKTIVGAAAMAKLKTTTLILVTNTVAGRQWRDELLRRTTLTEDEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + ++++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEY---RSLELFDSRDWGLIIYDE 303
>gi|417932536|ref|ZP_12575874.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
gi|340774172|gb|EGR96659.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
Length = 553
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 149/250 (59%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K R + L+ H RG T
Sbjct: 361 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNRVVEELVERH--RGQPT 415
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 416 LIIGQYVDQLEELAAELQCPIITGSTTPTRRQEIYQDFR-EGRIDLLVVSKVANFSIDLP 474
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K G +A FY +VS+DT++ ++ RQR
Sbjct: 475 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----FYAVVSRDTVDADFASHRQR 529
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 530 FLAEQGYSYR 539
>gi|365863777|ref|ZP_09403481.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
gi|364006749|gb|EHM27785.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
Length = 547
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H+ G++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVRKHQ--GEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ + F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFR-QGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLVVYDE 298
>gi|400975239|ref|ZP_10802470.1| DNA repair helicase [Salinibacterium sp. PAMC 21357]
Length = 548
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 10/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +GF
Sbjct: 302 EVHLLPAPVFK-LTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGF 360
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
I+ C EV + PE R EY +R L P K + L+ HE G++ +V
Sbjct: 361 ISPASCYEVRVDL-PENQRLEYAASADDERYRLAATAPAKIEIVRALVKKHE--GERILV 417
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ + A K+N P + G T +ER ++ Q F+ + VSKVA+ S DLPEA
Sbjct: 418 IGQYLDQIDDLAEKLNAPKLTGATPVAERERLYQEFR-EGITKILVVSKVANFSVDLPEA 476
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V IQ+S GSR++EAQRLGR+LR K+ + A FYTLV++DT++ +++ RQRFL
Sbjct: 477 TVAIQVSGSFGSRQEEAQRLGRLLRPKESGLP----ANFYTLVARDTVDQDFAQNRQRFL 532
Query: 456 INQGYSYKVI 465
QGYSY ++
Sbjct: 533 AEQGYSYTIL 542
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+LVG+ A + L+L + VS QW+ + +T + + ++ + K+
Sbjct: 210 AGKTLVGLGAMAQSKTTTLILVTNTVSARQWRAEILKRTTLTEEEVGEYSGQTKEI---L 266
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++ T KR E + L +WG+++ D+
Sbjct: 267 PVTIATYQIL--TAKRKGEYAH-LSLLDALDWGLVIYDE 302
>gi|345001279|ref|YP_004804133.1| helicase domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344316905|gb|AEN11593.1| helicase domain protein [Streptomyces sp. SirexAA-E]
Length = 551
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H +G++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVRKH--KGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ + F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFRQG-EISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTVDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLVVYDE 298
>gi|350569020|ref|ZP_08937418.1| DNA or RNA helicase of superfamily II [Propionibacterium avidum
ATCC 25577]
gi|348661263|gb|EGY77959.1| DNA or RNA helicase of superfamily II [Propionibacterium avidum
ATCC 25577]
Length = 552
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 151/252 (59%), Gaps = 15/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV + PE R + C ++ + Y M P K R L+A H RG T
Sbjct: 360 IAPADCVEVRVSL-PESDR--MTCAMAEPDVRYRMAATLPIKNRVVADLVARH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ ++R +I Q+F+ + + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELAEELRCPIITGSTTPTKRQKIYQDFR-GGVTDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----FYAVVSRDTVDADFASHRQR 528
Query: 454 FLINQGYSYKVI 465
FL QGYSY+++
Sbjct: 529 FLAEQGYSYRIV 540
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG TA R L+L + VS QWK + ++ I ++ K +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLTPDEIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ +K ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVITTKRK---GVHPNLELFEARDWGLVIYDE 301
>gi|334562936|ref|ZP_08515927.1| putative helicase [Corynebacterium bovis DSM 20582]
Length = 553
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 149/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + + R L + K R + L+A H G+ T++
Sbjct: 362 IAPAECTEVRVSLTDAERMVYATAEPADRYRLAATSATKTRTVRRLLARHP--GEPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ +++ P I G TS + R + F+ +V + VSKVA+ S DLP A+
Sbjct: 420 GAYVDQLEELGAELDAPVIDGRTSTTRREALYAAFRAG-EVRVLVVSKVANFSVDLPGAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A A FY++V++DT++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPKPDGGA----AHFYSVVARDTLDSEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY Y++I
Sbjct: 535 EQGYGYRII 543
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A R L+L + V+ QW+ + +T + I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMARSRTTTLILVTNTVAGRQWRDELLRRTTLTEEEIGEYSGERKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + ++++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRRTKGEF---RSLELFDSRDWGLIIYDE 303
>gi|83590752|ref|YP_430761.1| DEAD/DEAH box helicase [Moorella thermoacetica ATCC 39073]
gi|83573666|gb|ABC20218.1| DEAD/DEAH box helicase-like protein [Moorella thermoacetica ATCC
39073]
Length = 602
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED D+ LIGPK Y+ W +L+ +G+
Sbjct: 313 EVHLLPAPIFR-ITAELQARRRLGLTATLIREDGHEDDVFSLIGPKKYDLPWKQLEAQGW 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C EV + PE +Y + + NP K + +I HE G++ +V
Sbjct: 372 IAKATCYEVRLNLPPEMRLDYASAGERDKYRIAATNPVKEAVVENIIKRHE--GEQVLVI 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ P I G TS ER ++ Q F+ + + VSKVA+ + DLPEA+
Sbjct: 430 GQYLEQLERLARRLGVPMITGQTSNRERERLYQAFR-EGTLKCLVVSKVANFAIDLPEAS 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR KKG + A FYTLV+++T+E ++ RQ FL
Sbjct: 489 VAVQVSGAFGSRQEEAQRLGRILRPKKGGLP----ASFYTLVTRETVEQEFAVHRQLFLT 544
Query: 457 NQGYSYKVI 465
QGY Y +I
Sbjct: 545 EQGYRYVII 553
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG+ A + L+L S + QW + + + M+ +T E K+ KP
Sbjct: 218 GAGKTVVGIAAMALCQCYTLILVTSVTAARQWLAEIRDKTDLPPEMLGEYTGEKKEIKP- 276
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +I+H ++R+ E Q Q+WG+++ D+
Sbjct: 277 ---VTVATYQIITHRRRRN-EDYPNFQLFNQQDWGLIIYDE 313
>gi|226313631|ref|YP_002773525.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
gi|226096579|dbj|BAH45021.1| putative ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
Length = 557
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 143/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V + +Q+ +LGLTATL+RED + D+ LIGPK YE W ++++G+
Sbjct: 311 EVHLLPAPIFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPKKYEVPWKVMEEQGW 369
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ P P++ Y ++ + NP K + L+ H D+ ++
Sbjct: 370 IAEAHCREIRLPFEPKWREAYAHATARQKFRIAAENPKKLEVVRELLERHAH--DRVLII 427
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G ER + FK ++ + VSKVA+ + DLP+AN
Sbjct: 428 GQYIDQLEQMATALQLPLITGKVPDKEREVLYTQFK-KGEITRLIVSKVANFAVDLPDAN 486
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K ++ A FYTLV++DT E +S RQ FL+
Sbjct: 487 VAIQISGTYGSRQEEAQRLGRILRPK----TDDNTAHFYTLVTRDTREQEFSLHRQLFLV 542
Query: 457 NQGYSYKVI 465
QGY Y +I
Sbjct: 543 EQGYPYDII 551
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A C ++ L+L + SV QW + + D +M+ +T + K+ KP
Sbjct: 217 AGKTIIGLGAICQLQTATLILTTNTTSVRQWIAELLDKTGLDPNMVGEYTGDNKEVKP-- 274
Query: 97 CGILVTTYSMISHTQKRSWEAD-QTMQWLQNQEWGIMLLDD 136
I V TY ++++ + + E D ++ ++WG+++ D+
Sbjct: 275 --ITVATYQILTY--RPTAEDDFPHLKLFSERDWGLIIYDE 311
>gi|359425741|ref|ZP_09216835.1| putative ATP-dependent DNA helicase [Gordonia amarae NBRC 15530]
gi|358238908|dbj|GAB06417.1| putative ATP-dependent DNA helicase [Gordonia amarae NBRC 15530]
Length = 550
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ E +Y V + + L K + ++A H G +T++
Sbjct: 358 IAPADCVEVRVTLTDEERLQYAVAENDTKYKLCSTAHTKVNVVKAILAQHP--GSQTLII 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P + G T ER + F+ + +++T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGHELDAPVVQGSTRNKEREILFDRFR-SGEISTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR KK + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKK----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|336324883|ref|YP_004604849.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
gi|336100865|gb|AEI08685.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
Length = 552
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 306 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 364
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y V + S + L +P K + ++ H + T++
Sbjct: 365 IAPADCTEVRVQLDDDERMAYAVAEQSDKYRLAATSPKKNTVVRRILELHP--DEPTLII 422
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A K + P I G T ++R ++ Q F+ + ++ + VSKVA+ S DLP A+
Sbjct: 423 GAYLDQLEEIAEKFDVPVIDGRTGTAKREKLYQQFR-DGEIKVLAVSKVANFSVDLPSAS 481
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K AFFY++V++DT++ Y+ RQRFL
Sbjct: 482 VAIQISGTFGSRQEEAQRLGRILRPKPNG----GGAFFYSVVTRDTLDADYAAHRQRFLA 537
Query: 457 NQGYSYKVI 465
QGY Y+++
Sbjct: 538 EQGYGYRIM 546
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QW+ + ++ + I ++ E K+ +P
Sbjct: 213 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWRDELIRRTSLTEEEIGEYSGEKKEIRP- 271
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K ++A ++ +++WG+++ D+
Sbjct: 272 ---VTIATYQVITRKTKGEFKA---LEVFDSRDWGLIIYDE 306
>gi|385302855|gb|EIF46963.1| dna helicase [Dekkera bruxellensis AWRI1499]
Length = 211
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/185 (54%), Positives = 123/185 (66%), Gaps = 16/185 (8%)
Query: 365 IQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG 424
+ ILQNF+ N +VNTIF+SKV DTS DLPEA LIQISSH GSRRQEAQRLGRILRAK+
Sbjct: 1 MNILQNFQYNEQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR 60
Query: 425 AIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDE 484
E +NAFFY+LVS+DT EM YS KRQ FL++QGY++K+IT L GME + YST E
Sbjct: 61 N-DEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKIITHLNGMENLPNLAYSTPKE 119
Query: 485 QGQLLQQVL------AASETDADEERVAGEVGGVSGGFKRSG-------GTMASLSGADD 531
+ +LLQ+VL A E D E + G GVS K S +++ L+G +D
Sbjct: 120 RRELLQEVLLKNEEAAGVELGEDSENLIGH--GVSKRIKTSSSRAVKNQSSLSGLAGGED 177
Query: 532 AVYHE 536
Y E
Sbjct: 178 MAYVE 182
>gi|359764529|ref|ZP_09268374.1| putative ATP-dependent DNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
gi|359318081|dbj|GAB21207.1| putative ATP-dependent DNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
Length = 548
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + + L K + ++A H R +T+V
Sbjct: 351 IAPAECIEVRVTLTDEERLQYAVAENEAKYKLCSTAHTKVNVVRSILARH--RDSQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 409 GAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANFSIDLPEAS 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++VS+DT++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGQAHFYSVVSRDTLDADYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 524 EQGYAYRI 531
>gi|374581962|ref|ZP_09655056.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374418044|gb|EHQ90479.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 569
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 151/251 (60%), Gaps = 8/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED K ++ LIGPK + W L+ +G+
Sbjct: 322 EVHLLPAPVFRATAEL-QAKRRLGLTATLVREDGKEDEVFTLIGPKKMDVPWKVLESQGW 380
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E MS + +Y + + + L NP K L+ H R D +V
Sbjct: 381 IATAECMEWRISMSKDRRMDYALAEEKGKFRLAAENPRKLNKVSELMERH--RDDLVLVI 438
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A +++ P I G T Q ER ++ + F+ + +++ + VSKVA+ + DLP+AN
Sbjct: 439 GQYVRQLEMLARELDAPLITGKTPQRERERLYEEFR-SGRLHCLVVSKVANFAIDLPDAN 497
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K+G E A+FY+LVS+DT E ++ RQ FL
Sbjct: 498 VAVQVSGTFGSRQEEAQRLGRILRPKQG----EGKAYFYSLVSKDTKEQEFAMHRQLFLT 553
Query: 457 NQGYSYKVITK 467
QGY+YK++ +
Sbjct: 554 EQGYAYKIMIE 564
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+++G+ ++ L+L + +V+QW + + +T + S + +T E K+ C
Sbjct: 228 AGKTVIGMGVMMELQCETLILTTNNSAVKQWLRELRDKTTLEASQMGEYTGEKKEI---C 284
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +++H + D + WG+++ D+
Sbjct: 285 PVTVATYQILTHRTQAGGGFDH-FGLFNEKNWGLIIYDE 322
>gi|374607824|ref|ZP_09680624.1| type III restriction protein res subunit [Mycobacterium tusciae
JS617]
gi|373554386|gb|EHP80965.1| type III restriction protein res subunit [Mycobacterium tusciae
JS617]
Length = 552
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y V + +R L +K + ++ H +GD+T+V
Sbjct: 361 IAPAECIEVRVTMTDNERMLYAVAEPDERYKLCSTVHSKIAVVKSILEKH--KGDQTLVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + ++N P I G T +ER + F+ ++ T+ VSKVA+ S DLPEAN
Sbjct: 419 GAYLDQIDELGRELNAPVIQGSTKTAEREALYDEFRRG-EIPTLVVSKVANFSIDLPEAN 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 478 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVSRDSLDAEYAAHRQRFLA 533
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 534 EQGYGYII 541
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 209 GAGKTLVGAAAMAKASATTLILVTNTVAGRQWKRELISRTSLTEDEIGEYSGEKKEIRP- 267
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 268 ---VTIATYQVITRRTKGEY---RHLELFDSRDWGLIIYDE 302
>gi|118365862|ref|XP_001016150.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89297917|gb|EAR95905.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 683
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 10/239 (4%)
Query: 230 LTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPM 289
L ++Q ++ + RED+KI DL +IGPKLYEAN EL + ++A+ C C M
Sbjct: 398 LNLIQY--RINCNSVPYREDNKIDDLFHVIGPKLYEANISELIQDSYLAKPYCVVFRCKM 455
Query: 290 ---SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHY 346
+F ++ K + L NP K++ YLI +HE R DK +VF D + LK+Y
Sbjct: 456 HECCEDFMKDR---KFKNKPSLQSGNPQKFKLLYYLIKFHESRNDKILVFCDQIPVLKYY 512
Query: 347 AVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG 406
+ KM P IYG E++ L F+ ++NT+F+S+V DT+ DLP ANV IQI G
Sbjct: 513 SQKMGYPAIYGEVDLLEKLGWLDLFR-EGEINTLFLSRVGDTALDLPIANVCIQIGFQFG 571
Query: 407 SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI 465
SRRQE QRLGRI+R K+G EYNAFFYT+VS++T + + +RQ+ L++ G +++VI
Sbjct: 572 SRRQEVQRLGRIMRRKEGQKG-EYNAFFYTIVSKNTEQAQFYYRRQKSLMDLGINFEVI 629
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----- 92
AGK+L+G+ ++ +V+C+ + QWK++F W+T +D I +T + K+
Sbjct: 277 AGKTLLGIILTERIKGNTIVICDIYTATNQWKNEFTKWTTVEDDTIKIYTGKTKNLQVEQ 336
Query: 93 -KPMGCGILVTTYSMISHTQKRSWEADQTMQWL 124
KP IL+TT+ +S K + + Q++
Sbjct: 337 TKPF---ILITTFKQLSSIIKSNKLQKEKRQYM 366
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 185 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
+IF+E+F Y+ ++FLI IAEPV +P IH
Sbjct: 55 YIFVEAFHEKYKEVYEFLIKIAEPVNKPNFIH 86
>gi|453362685|dbj|GAC81440.1| putative ATP-dependent DNA helicase [Gordonia malaquae NBRC 108250]
Length = 544
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M+ E +Y V + ++ L +K + ++ H +T+V
Sbjct: 358 IAPADCVEVRVTMTDEERLQYAVAEAEEKYKLCSTARSKMSVVKSILGRHSDA--QTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +N P I G T +ER ++ F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGEALNCPVIQGSTRNAEREKLFDAFRRG-ELSTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGQAHFYSVVSRDSLDADYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 531 EQGYAYRII 539
>gi|378719475|ref|YP_005284364.1| putative DNA repair helicase [Gordonia polyisoprenivorans VH2]
gi|375754178|gb|AFA74998.1| putative DNA repair helicase [Gordonia polyisoprenivorans VH2]
Length = 555
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + + L K + ++A H R +T+V
Sbjct: 358 IAPAECIEVRVTLTDEERLQYAVAENEAKYKLCSTAHTKVNVVRSILARH--RDSQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|238062309|ref|ZP_04607018.1| helicase [Micromonospora sp. ATCC 39149]
gi|237884120|gb|EEP72948.1| helicase [Micromonospora sp. ATCC 39149]
Length = 559
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++++G+
Sbjct: 305 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEQQGW 363
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA QC EV ++ Y ++ +R + K + L+ H G++ +V
Sbjct: 364 IAPAQCTEVRVTLTDAERMSYATAESEERYRMAATARTKLPVVRALVDRHP--GEQVLVI 421
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ + +V T+ +SKV + S DLPEA
Sbjct: 422 GGYIEQLHQLGEYLDAPIVQGSTTNKERERLFDAFR-SGEVRTLVISKVGNFSIDLPEAA 480
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 481 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADRRQAHFYTVVSRDTIDTEYAAHRQRFLA 536
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 537 EQGYAYTII 545
>gi|398813510|ref|ZP_10572205.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398038487|gb|EJL31647.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 554
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 143/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V + +Q+ +LGLTATL+RED + D+ LIGPK YE W ++++G+
Sbjct: 308 EVHLLPAPIFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPKKYEVPWKVMEEQGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ P P++ Y ++ + NP K + L+ H D+ ++
Sbjct: 367 IAEAHCREIRLPFEPKWREAYAHATARQKFRIAAENPKKLEVVRELLERHAH--DRVLII 424
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G ER + FK ++ + VSKVA+ + DLP+AN
Sbjct: 425 GQYIDQLEQMASALQLPLITGKVPDKERELLYTQFK-KGEITRLIVSKVANFAVDLPDAN 483
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K ++ A FYTLV++DT E +S RQ FL+
Sbjct: 484 VAIQISGTYGSRQEEAQRLGRILRPK----TDDNTAHFYTLVTRDTREQEFSLHRQLFLV 539
Query: 457 NQGYSYKVI 465
QGY Y +I
Sbjct: 540 EQGYPYDII 548
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A C ++ L+L + SV QW + + D +M+ +T + K+ KP
Sbjct: 214 AGKTVIGLGAICQLQTATLILTTNTTSVRQWIAELLDKTGLDPNMVGEYTGDNKEVKP-- 271
Query: 97 CGILVTTYSMISHTQKRSWEAD-QTMQWLQNQEWGIMLLDD 136
I V TY ++++ + + E D ++ ++WG+++ D+
Sbjct: 272 --ITVATYQILTY--RPTAEDDFPHLKLFSERDWGLIIYDE 308
>gi|300790353|ref|YP_003770644.1| DNA excision repair protein [Amycolatopsis mediterranei U32]
gi|384153882|ref|YP_005536698.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|399542231|ref|YP_006554893.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|299799867|gb|ADJ50242.1| DNA excision repair protein [Amycolatopsis mediterranei U32]
gi|340532036|gb|AEK47241.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|398323001|gb|AFO81948.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
Length = 548
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ EY + +R L K + ++A H G+ T+V
Sbjct: 358 IAPAECTEVRVTLTDAERLEYATAEADERYKLAATALTKTPVIKSIVAKHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEMLGDELDAPVIQGATRNKEREELFDKFRRG-EIKTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQISGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSIVSRDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYHIV 539
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMARAQATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRKTKGEY---RHLELFDSRDWGLVVYDE 299
>gi|377569071|ref|ZP_09798246.1| putative ATP-dependent DNA helicase [Gordonia terrae NBRC 100016]
gi|377533978|dbj|GAB43411.1| putative ATP-dependent DNA helicase [Gordonia terrae NBRC 100016]
Length = 559
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ E +Y V + ++ L K + ++ H RG +T++
Sbjct: 361 IAPADCVEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILDKH--RGQQTLII 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 419 GAYIDQLEELGRELDSPVIQGSTKNKEREVLFDRFR-SGELQTLVVSKVANFSIDLPEAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K+ + A FY++VS+DT++ Y+ RQRFL
Sbjct: 478 VAVQVSGTFGSRQEEAQRLGRLLRPKR----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 533
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 534 EQGYAYRI 541
>gi|338811579|ref|ZP_08623785.1| DEAD/DEAH box helicase-like protein [Acetonema longum DSM 6540]
gi|337276341|gb|EGO64772.1| DEAD/DEAH box helicase-like protein [Acetonema longum DSM 6540]
Length = 569
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 154/251 (61%), Gaps = 14/251 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVHT+PA +F+ V +Q+ +LGLTATL+RED + D+ LIGPK + W EL++ G+
Sbjct: 327 EVHTLPAPVFQ-VTAELQARRRLGLTATLIREDGRETDVFTLIGPKKVDIPWRELERDGW 385
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVM---NPNKYRATQYLIAYHERRGDKT 333
IA C+E+ PMS + E C S + Y + NP K + LIA H+ G+
Sbjct: 386 IAPTVCSELRVPMSLDLRLE---CAQSGDKIAYRLEAENPAKLAVVKDLIANHQ--GESI 440
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V + L+ A ++N P I G T+ ++R ++ ++F+ ++ + VSKVA+ + DLP
Sbjct: 441 LVIGQYIKQLEILAAELNAPLITGKTASAKRDELYEDFRQG-RIPLLVVSKVANFAIDLP 499
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V IQ+S GSR++EAQRLGRILR K A+ A+FYT+VS+D+ E +S RQ
Sbjct: 500 DASVAIQVSGAFGSRQEEAQRLGRILRPK----ADGRGAYFYTVVSKDSREQEFSHHRQL 555
Query: 454 FLINQGYSYKV 464
FL QGY Y +
Sbjct: 556 FLTEQGYQYII 566
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ V+ L+L S +V QW + ++ + ++++ KD +P
Sbjct: 233 AGKTVIGLGVMAQVQTNTLILTTSTTAVRQWIRELLDKTSLTPDEVGEYSADRKDVRP-- 290
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I VTTY MI++ ++ Q ++ WG ++ D+
Sbjct: 291 --ITVTTYQMITYRPEKDGPFPH-FQLFNSRPWGFIIYDE 327
>gi|359778201|ref|ZP_09281472.1| putative ATP-dependent DNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359304664|dbj|GAB15301.1| putative ATP-dependent DNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 547
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + + + + L + K + L+A+H RG++ +V
Sbjct: 358 IAPADCVEVRVDLPKDERVAYAMAEDADKYRLCATSETKTLVAEQLVAHH--RGEQVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T R ++ F+ +V T+ VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDELGERLGAPVIKGETPVKARQKLFDAFRAG-EVQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+ A A FY+LV++DT++ ++ KRQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPKQDGRA----ARFYSLVARDTLDQDFAAKRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIM 539
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A T L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 207 AGKTLVGAAAMATSSTTTLILVTNTVSARQWKDELLRRTSLTEDEIGEYSGAVKEVRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++ T KR ++ + +WG+++ D+
Sbjct: 265 --VTIATYQVL--TTKRGGLYPH-LELVDGHDWGLIIYDE 299
>gi|340359059|ref|ZP_08681557.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339885345|gb|EGQ75073.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 448 str.
F0400]
Length = 559
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 314 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 372
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + R L P K R L+A H G+ +V
Sbjct: 373 IAPAICTEVRLTLDAGERMAYATAEREDRYRLAAATPAKLRIVDGLLARHP--GESALVI 430
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A ++ P I G T+ ER ++ + F+ +V+T+ VSKVA+ S DLP A+
Sbjct: 431 GQYVDQLEELAKHLDAPLITGATTVRERQRLYEAFRAG-EVSTLVVSKVANFSIDLPGAS 489
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K A+ A FYT+V++DT++ ++ RQRFL
Sbjct: 490 VAIQVSGSFGSRQEEAQRLGRIVRPK----ADGRQAHFYTVVARDTVDQDFAAHRQRFLA 545
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 546 EQGYAYDIV 554
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG LVL + VS QWK + +++ ++ I ++ K+ +P
Sbjct: 222 AGKTLVGAAVMARSSTTTLVLVTNAVSARQWKEELIRFTSLTENEIGEYSGSRKEIRP-- 279
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L + +WG+++ D+
Sbjct: 280 --VTIATYQVLTTKRKGVY---PHLDLLDSHDWGLIVYDE 314
>gi|269796419|ref|YP_003315874.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269098604|gb|ACZ23040.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
Length = 558
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 306 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIEAQGY 364
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + + L P K + L+A HE GD T+V
Sbjct: 365 IAPADCVEVRLTLPERDRMLYATAEPEDKYRLAACAPGKNAIVERLVALHE--GDPTLVI 422
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T+ ER ++ F+ ++ + VSKVA+ S DLPEA+
Sbjct: 423 GQYIDQLEELGEHLGAPVITGATTVKERQRLFDAFRTG-EITKLVVSKVANFSIDLPEAS 481
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR++R K A+ A FY +V++DT++ ++ RQRFL
Sbjct: 482 VAIQVSGSFGSRQEEAQRLGRVMRPK----ADGRTAHFYAVVARDTVDQEFAAHRQRFLA 537
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 538 EQGYAYRIV 546
>gi|357400022|ref|YP_004911947.1| ATP-dependent DNA helicase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|386356062|ref|YP_006054308.1| helicase domain-containing protein [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337766431|emb|CCB75142.1| putative ATP-dependent DNA helicase [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365806569|gb|AEW94785.1| helicase domain protein [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 550
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 156/259 (60%), Gaps = 11/259 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K R T+ L+ H +G +T+V
Sbjct: 357 IAPADCVEVRVNLTDAERLAYATAETEEKYRYCATTETKRRVTEALVRRH--KGQQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ + +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-SGELSVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTVDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVITK---LAGME 472
QGY+Y+++ LAG E
Sbjct: 530 EQGYAYRIVDADDLLAGDE 548
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A T + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMATAKSTTLILVTNTVSARQWKHELVRRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|374987682|ref|YP_004963177.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
BCW-1]
gi|297158334|gb|ADI08046.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
BCW-1]
Length = 551
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 157/261 (60%), Gaps = 11/261 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ +K + T+ L+A H +G +T+V
Sbjct: 356 IAPADCVEVRVNLTEHERLAYATAEADEKYRYCATTDSKRKVTEALVARH--KGQQTLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T+ ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 414 GQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRRG-EISVLVVSKVANFSIDLPEAT 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAVFYSVVARDTIDQDFAAHRQRFLA 528
Query: 457 NQGYSYKVITK---LAGMEEE 474
QGY+Y+++ LAG + E
Sbjct: 529 EQGYAYRIVDSNALLAGEDVE 549
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A T + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 204 GAGKTLVGAGAMATAKSTTLILVTNTVSARQWKHELVRRTSLTEDEIGEYSGTRKEIRP- 262
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 ---VTIATYQVLTTKRKGIYP---HLELFDSRDWGLIVYDE 297
>gi|422428926|ref|ZP_16505831.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|314980563|gb|EFT24657.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
Length = 552
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 528
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 529 FLAEQGYSYR 538
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|444306441|ref|ZP_21142206.1| helicase [Arthrobacter sp. SJCon]
gi|443481233|gb|ELT44163.1| helicase [Arthrobacter sp. SJCon]
Length = 548
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIESQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S + Y + + + L + +K + + L+A H G++ +V
Sbjct: 358 IAPADCVEVRVDLSKDERVAYAMADDADKYRLCSTSESKTQVVEELVARHA--GEQLLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS R ++ F+ + T+ VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDDLGGRLGAPVIKGDTSVKVRQRLFDEFRAG-DIQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR KK A A FY+LV++DT++ ++ KRQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPKKDGRA----ARFYSLVARDTLDQDFAAKRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIM 539
>gi|284989384|ref|YP_003407938.1| type III restriction protein res subunit [Geodermatophilus obscurus
DSM 43160]
gi|284062629|gb|ADB73567.1| type III restriction protein res subunit [Geodermatophilus obscurus
DSM 43160]
Length = 561
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 152/262 (58%), Gaps = 10/262 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFR-LTADLQSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWRDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV + E Y V + +R + +K + ++ H ++ +V
Sbjct: 358 IAPAECIEVRVSLDDEERMTYAVAEPEERYRIAATATSKLPVIRRVLDRHP--DEQKLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T+ ER ++ F+ +V T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGRALDAPVIQGSTTNREREKLFDAFRAG-EVKTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKVI--TKLAGMEEERG 476
QGY+Y ++ LAG E G
Sbjct: 531 EQGYAYTIVDAADLAGPGEVNG 552
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ +K + + + Q+WG+++ D+
Sbjct: 265 ---VTIATYQVITTRRKGEY---RHLDLFDAQDWGLIVYDE 299
>gi|304404122|ref|ZP_07385784.1| type III restriction protein res subunit [Paenibacillus
curdlanolyticus YK9]
gi|304347100|gb|EFM12932.1| type III restriction protein res subunit [Paenibacillus
curdlanolyticus YK9]
Length = 568
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 142/246 (57%), Gaps = 8/246 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIGPK YE W EL+++G
Sbjct: 318 EVHMLPAPVFR-LTAELQATRRLGLTATLIREDGRETDVFSLIGPKRYELPWKELERQGQ 376
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA ++C EV P+ Y R + NPNK + L+ H R +V
Sbjct: 377 IAELRCEEVRVPLPDGVAHSYWTSDARTRTRMAAENPNKTAVVRQLLERH--RDKPALVI 434
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ LK A ++ P + G + +ER I ++F+ + VSK+A+ + DLP+A
Sbjct: 435 GAYLSQLKQIAASLDAPLLTGEMAHNERTHIYESFRRGEH-PVLVVSKIANFAVDLPDAA 493
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ +Q+S GSR++EAQR+GR+LR KK E A FYTLVS+ T E+ Y+ KRQ+F+
Sbjct: 494 IAVQVSGTFGSRQEEAQRIGRLLRPKK----EHNEAVFYTLVSEGTKEVDYAMKRQQFMT 549
Query: 457 NQGYSY 462
QGY Y
Sbjct: 550 EQGYRY 555
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A ++ L++ +S SV+QWK + +T ++ I ++S++K +P
Sbjct: 224 AGKTIIGIGAVARLQCATLIVTSSLTSVQQWKSELLDKTTLEEEAIGEYSSQSKQVRP-- 281
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY+M++ E + M ++WG+++ D+
Sbjct: 282 --ITIATYNMLATGGGAEGEY-RHMALFNERDWGLIIYDE 318
>gi|289428471|ref|ZP_06430157.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|386023418|ref|YP_005941721.1| DNA helicase [Propionibacterium acnes 266]
gi|289158443|gb|EFD06660.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|332674874|gb|AEE71690.1| DNA helicase [Propionibacterium acnes 266]
Length = 553
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 361 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 415
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 416 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 474
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 475 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 529
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 530 FLAEQGYSYR 539
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 210 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 267
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 268 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 302
>gi|365962182|ref|YP_004943748.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365964426|ref|YP_004945991.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365973362|ref|YP_004954921.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|387502843|ref|YP_005944072.1| DEAD/DEAH box helicase [Propionibacterium acnes 6609]
gi|419420681|ref|ZP_13960910.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|422387315|ref|ZP_16467432.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA2]
gi|422392114|ref|ZP_16472188.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL099PA1]
gi|422395160|ref|ZP_16475201.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL097PA1]
gi|422424884|ref|ZP_16501830.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422427243|ref|ZP_16504161.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422431858|ref|ZP_16508728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436622|ref|ZP_16513469.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422442842|ref|ZP_16519645.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422446641|ref|ZP_16523386.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422450009|ref|ZP_16526726.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|422453274|ref|ZP_16529970.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422456418|ref|ZP_16533082.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|422460415|ref|ZP_16537049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|422476788|ref|ZP_16553227.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422484213|ref|ZP_16560592.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|422491773|ref|ZP_16568084.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422494156|ref|ZP_16570451.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|422500454|ref|ZP_16576710.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422511566|ref|ZP_16587709.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422515627|ref|ZP_16591739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422518196|ref|ZP_16594268.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|422520842|ref|ZP_16596884.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422523774|ref|ZP_16599786.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422526334|ref|ZP_16602333.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422528355|ref|ZP_16604337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422531280|ref|ZP_16607228.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422535815|ref|ZP_16611723.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|422538301|ref|ZP_16614175.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|422541084|ref|ZP_16616942.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422543632|ref|ZP_16619472.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|422546547|ref|ZP_16622374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550974|ref|ZP_16626771.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|422557739|ref|ZP_16633482.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|422562547|ref|ZP_16638225.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|422570476|ref|ZP_16646071.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|422578287|ref|ZP_16653816.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|313765421|gb|EFS36785.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|313772592|gb|EFS38558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313792945|gb|EFS41012.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313802605|gb|EFS43827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313810814|gb|EFS48528.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313814341|gb|EFS52055.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313815175|gb|EFS52889.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313828480|gb|EFS66194.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|313831933|gb|EFS69647.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313840243|gb|EFS77957.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|314915936|gb|EFS79767.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314916965|gb|EFS80796.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314921485|gb|EFS85316.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314931191|gb|EFS95022.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314954750|gb|EFS99156.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314958917|gb|EFT03019.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314964361|gb|EFT08461.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314969460|gb|EFT13558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|314974527|gb|EFT18622.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314977279|gb|EFT21374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|315078624|gb|EFT50655.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315081915|gb|EFT53891.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315097598|gb|EFT69574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|315099814|gb|EFT71790.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|315101878|gb|EFT73854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|315106614|gb|EFT78590.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|315110404|gb|EFT82380.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|327331551|gb|EGE73290.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA2]
gi|327335058|gb|EGE76769.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL097PA1]
gi|327447055|gb|EGE93709.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|327449909|gb|EGE96563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327454752|gb|EGF01407.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|327456900|gb|EGF03555.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328755809|gb|EGF69425.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|328756588|gb|EGF70204.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328761680|gb|EGF75195.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL099PA1]
gi|335276888|gb|AEH28793.1| DEAD/DEAH box helicase [Propionibacterium acnes 6609]
gi|365738863|gb|AEW83065.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741107|gb|AEW80801.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365743361|gb|AEW78558.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|379979055|gb|EIA12379.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|456740051|gb|EMF64582.1| DEAD/DEAH box helicase [Propionibacterium acnes FZ1/2/0]
Length = 552
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 528
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 529 FLAEQGYSYR 538
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|418419027|ref|ZP_12992212.1| DNA helicase [Mycobacterium abscessus subsp. bolletii BD]
gi|364002200|gb|EHM23392.1| DNA helicase [Mycobacterium abscessus subsp. bolletii BD]
Length = 550
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + ++A H G T+V
Sbjct: 358 IAPAECIEVRVTLTDNERMIYATAEADERYKLCSTAHTKINVVKSILARHP--GAPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T +ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGAELDAPVIQGSTKNAEREALFDAFRRG-EIGTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A+FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGQAYFYSVVSRDTLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 531 EQGYGYRI 538
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAQATTLILVTNTVAGRQWKRELLARTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---RHLELFDSRDWGLIVYDE 299
>gi|326384180|ref|ZP_08205862.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326197045|gb|EGD54237.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 550
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ E +Y V + ++ L +K R + ++ H + +T+V
Sbjct: 358 IAPAECIEVRVTMTDEERLQYAVAEPEEKYKLCSTAHSKVRVVRSILDRH--KDSQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDCPVIQGSTRNAEREKLFDAFRRG-ELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGQAHFYSVVSRDSLDADYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|169627959|ref|YP_001701608.1| DNA helicase [Mycobacterium abscessus ATCC 19977]
gi|365868780|ref|ZP_09408329.1| DNA helicase [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|414584053|ref|ZP_11441193.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1215]
gi|418250922|ref|ZP_12877134.1| DNA helicase [Mycobacterium abscessus 47J26]
gi|419710724|ref|ZP_14238189.1| DNA helicase [Mycobacterium abscessus M93]
gi|419714657|ref|ZP_14242071.1| DNA helicase [Mycobacterium abscessus M94]
gi|420862860|ref|ZP_15326254.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0303]
gi|420867257|ref|ZP_15330643.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RA]
gi|420871691|ref|ZP_15335071.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RB]
gi|420881318|ref|ZP_15344685.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0304]
gi|420881914|ref|ZP_15345278.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0421]
gi|420887751|ref|ZP_15351107.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0422]
gi|420893040|ref|ZP_15356383.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0708]
gi|420902683|ref|ZP_15366014.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0817]
gi|420903476|ref|ZP_15366799.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1212]
gi|420913517|ref|ZP_15376829.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-R]
gi|420914723|ref|ZP_15378029.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-S]
gi|420920523|ref|ZP_15383820.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-S]
gi|420925608|ref|ZP_15388896.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-1108]
gi|420930047|ref|ZP_15393324.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-151-0930]
gi|420938886|ref|ZP_15402155.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-152-0914]
gi|420940295|ref|ZP_15403560.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-153-0915]
gi|420945886|ref|ZP_15409139.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-154-0310]
gi|420950472|ref|ZP_15413718.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0626]
gi|420954640|ref|ZP_15417880.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0107]
gi|420960178|ref|ZP_15423408.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-1231]
gi|420965152|ref|ZP_15428368.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0810-R]
gi|420970428|ref|ZP_15433628.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0921]
gi|420975958|ref|ZP_15439143.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0212]
gi|420981334|ref|ZP_15444507.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-R]
gi|420985956|ref|ZP_15449119.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0206]
gi|420990622|ref|ZP_15453775.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0307]
gi|420996443|ref|ZP_15459584.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-R]
gi|421000872|ref|ZP_15464005.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-S]
gi|421005871|ref|ZP_15468987.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0119-R]
gi|421011380|ref|ZP_15474478.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-R]
gi|421016200|ref|ZP_15479269.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-S]
gi|421021800|ref|ZP_15484851.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0731]
gi|421027459|ref|ZP_15490498.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-R]
gi|421032529|ref|ZP_15495553.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-S]
gi|421038231|ref|ZP_15501242.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-R]
gi|421046892|ref|ZP_15509892.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-S]
gi|421047622|ref|ZP_15510618.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169239926|emb|CAM60954.1| Probable DNA helicase [Mycobacterium abscessus]
gi|353449547|gb|EHB97944.1| DNA helicase [Mycobacterium abscessus 47J26]
gi|363999710|gb|EHM20912.1| DNA helicase [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|382940723|gb|EIC65046.1| DNA helicase [Mycobacterium abscessus M93]
gi|382945347|gb|EIC69643.1| DNA helicase [Mycobacterium abscessus M94]
gi|392074380|gb|EIU00217.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RA]
gi|392074534|gb|EIU00370.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0303]
gi|392075880|gb|EIU01713.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RB]
gi|392086227|gb|EIU12052.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0304]
gi|392090969|gb|EIU16780.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0421]
gi|392093358|gb|EIU19156.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0422]
gi|392100044|gb|EIU25838.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0817]
gi|392106804|gb|EIU32588.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0708]
gi|392110021|gb|EIU35794.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1212]
gi|392115511|gb|EIU41280.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-R]
gi|392119205|gb|EIU44973.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1215]
gi|392124797|gb|EIU50556.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-S]
gi|392130359|gb|EIU56105.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-S]
gi|392140159|gb|EIU65889.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-151-0930]
gi|392140683|gb|EIU66410.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-1108]
gi|392144401|gb|EIU70126.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-152-0914]
gi|392156727|gb|EIU82427.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-153-0915]
gi|392159094|gb|EIU84790.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-154-0310]
gi|392160249|gb|EIU85940.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0626]
gi|392173038|gb|EIU98707.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0212]
gi|392174857|gb|EIV00522.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0921]
gi|392177132|gb|EIV02790.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-R]
gi|392188760|gb|EIV14395.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0206]
gi|392190644|gb|EIV16274.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-R]
gi|392190807|gb|EIV16435.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0307]
gi|392203026|gb|EIV28622.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-S]
gi|392203341|gb|EIV28935.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0119-R]
gi|392212690|gb|EIV38250.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-R]
gi|392216822|gb|EIV42361.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-S]
gi|392217370|gb|EIV42908.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0731]
gi|392226445|gb|EIV51959.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-R]
gi|392232116|gb|EIV57619.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-S]
gi|392233419|gb|EIV58918.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-R]
gi|392236345|gb|EIV61843.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-S]
gi|392241787|gb|EIV67274.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense CCUG 48898]
gi|392256246|gb|EIV81705.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-1231]
gi|392256433|gb|EIV81890.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0107]
gi|392258131|gb|EIV83578.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0810-R]
Length = 550
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + ++A H G T+V
Sbjct: 358 IAPAECIEVRVTLTDNERMIYATAEADERYKLCSTAHTKINVVKSILARHP--GAPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T +ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGTELDAPVIQGSTKNAEREALFDAFRRG-EIGTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A+FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGQAYFYSVVSRDTLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 531 EQGYGYRI 538
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAQATTLILVTNTVAGRQWKRELLARTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---RHLELFDSRDWGLIVYDE 299
>gi|251797763|ref|YP_003012494.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
gi|247545389|gb|ACT02408.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
Length = 554
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 141/248 (56%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED D+ LIGPK +E W ++ G
Sbjct: 312 EVHLLPAPVFRMTANI-QATRRLGLTATLVREDGCEEDVFSLIGPKQFELQWKTVEAEGH 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA V+C E+ PM Y + RL L NP K + L+ HE G T++
Sbjct: 371 IASVKCTEIRVPMDQGISELYHAAEKRSRLRLAAENPGKVPVVRQLLERHE--GTPTLII 428
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A + P I G Q+ER + + FK + V + VSKVA+ + DLP+A
Sbjct: 429 GQYLDQLHSIADSLEVPVITGELPQNERQSLYEQFK-SGGVPVLAVSKVANFAVDLPDAA 487
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQR+GRILR K+G A+FYT+V+ DT E Y+ +RQ FL+
Sbjct: 488 VAIQISGSYGSRQEEAQRIGRILRPKEG----RNEAWFYTIVTDDTSETEYAARRQMFLL 543
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 544 EQGYQYEL 551
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ A + L+L ++ SV+QWK + +T + + +T +K+ +P
Sbjct: 218 AGKTIVGIAALARLNSATLILTSNATSVQQWKEELLDKTTLQPAEVGEYTGASKEVRP-- 275
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++H +K ++ M+ ++WG+++ D+
Sbjct: 276 --VTIATYQILTH-RKSKKDSFHHMKLFSERDWGLIIYDE 312
>gi|422559000|ref|ZP_16634728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|314985619|gb|EFT29711.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
Length = 552
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 528
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 529 FLAEQGYSYR 538
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|422473913|ref|ZP_16550383.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|313834526|gb|EFS72240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
Length = 552
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 528
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 529 FLAEQGYSYR 538
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|354606435|ref|ZP_09024406.1| hypothetical protein HMPREF1003_00973 [Propionibacterium sp.
5_U_42AFAA]
gi|422384461|ref|ZP_16464602.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA3]
gi|422447472|ref|ZP_16524204.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|422479701|ref|ZP_16556111.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|422481533|ref|ZP_16557932.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|422487604|ref|ZP_16563935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422489052|ref|ZP_16565379.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498015|ref|ZP_16574288.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422504240|ref|ZP_16580477.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|422504942|ref|ZP_16581176.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422509427|ref|ZP_16585585.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|422514403|ref|ZP_16590524.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|422535349|ref|ZP_16611272.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|422553142|ref|ZP_16628929.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422554616|ref|ZP_16630386.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|422567764|ref|ZP_16643390.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|313806616|gb|EFS45123.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|313817160|gb|EFS54874.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|313821776|gb|EFS59490.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|313824332|gb|EFS62046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|313826692|gb|EFS64406.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|314926883|gb|EFS90714.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|314961211|gb|EFT05312.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314987445|gb|EFT31536.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|314988958|gb|EFT33049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315082589|gb|EFT54565.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|315086301|gb|EFT58277.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|315087551|gb|EFT59527.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|327333533|gb|EGE75253.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA3]
gi|327445441|gb|EGE92095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328758685|gb|EGF72301.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|353557842|gb|EHC27210.1| hypothetical protein HMPREF1003_00973 [Propionibacterium sp.
5_U_42AFAA]
Length = 552
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 528
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 529 FLAEQGYSYR 538
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|295130034|ref|YP_003580697.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|342211342|ref|ZP_08704067.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
gi|291376058|gb|ADD99912.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|340766886|gb|EGR89411.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
Length = 553
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 361 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 415
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 416 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 474
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 475 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 529
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 530 FLAEQGYSYR 539
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 210 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 267
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 268 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 302
>gi|345015973|ref|YP_004818327.1| helicase [Streptomyces violaceusniger Tu 4113]
gi|344042322|gb|AEM88047.1| helicase domain-containing protein [Streptomyces violaceusniger Tu
4113]
Length = 549
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ +K + T+ L+A H +G +T+V
Sbjct: 357 IAPADCVEVRVNLTEAERLTYATAETDEKYRYCATTDSKRKVTEALVARH--KGQQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T+ ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFR-QGELSVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHPAVFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A T + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMATAKSTTLILVTNTVSARQWKHELVRRTSLTEEEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---ITIATYQVLTTKRKGIY---PHLELFDSRDWGLIVYDE 298
>gi|407934845|ref|YP_006850487.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|407903426|gb|AFU40256.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
Length = 552
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 528
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 529 FLAEQGYSYR 538
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|402815941|ref|ZP_10865533.1| putative ATP-dependent helicase [Paenibacillus alvei DSM 29]
gi|402506981|gb|EJW17504.1| putative ATP-dependent helicase [Paenibacillus alvei DSM 29]
Length = 568
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK YE W EL++ G+
Sbjct: 310 EVHLLPAPVFRTTADL-QATRRLGLTATLVREDGCERDVFSLIGPKRYELPWKELEQDGW 368
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA V C EV P+S E + YL + + N K A + ++ H + T++
Sbjct: 369 IAEVDCVEVRVPLSEEGRKYYLQAGERDKARIAGENELKIEAVKRILKRHPKL--PTLII 426
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + ++ P + G T Q ER Q+ FK + + VSKVA+ + DLP+A
Sbjct: 427 GQYLQQLDRLSQSLSAPVLTGKTPQEEREQLYAQFK-QGSIEVLIVSKVANFAVDLPDAT 485
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+DT E Y+ KRQRFL+
Sbjct: 486 VAIQVSGSFGSRQEEAQRLGRLLRPK----ADGRQASFYSVVSEDTKERDYAMKRQRFLV 541
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 542 EQGYQYAI 549
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+TA ++ L+L ++ SV+QWK + +T D + +T ++K +P
Sbjct: 216 AGKTIVGITAMTELQSETLILTSNTTSVKQWKREILTRTTLLDEQVGEYTGKSKQVRP-- 273
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY M+++ Q + E Q M ++WG+++ D+
Sbjct: 274 --VTISTYQMMTYRQDKEREC-QHMHLFHERDWGLIIYDE 310
>gi|227496346|ref|ZP_03926637.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226834122|gb|EEH66505.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 559
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 147/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 314 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 372
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y ++ R L P K L+A H G+ +V
Sbjct: 373 IAPAVCTEVRLSLEAGERMTYATAESEDRYRLAATTPAKVAVVDQLLARHA--GESALVI 430
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A + P I G T+ ER ++ Q F+ + +V+T+ VSKVA+ S DLP A+
Sbjct: 431 GQYVDQLEELAEHLGAPVITGSTTVRERQKLYQAFR-DGEVSTLVVSKVANFSIDLPGAS 489
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K ++ A FYT+V++DT++ ++ RQRFL
Sbjct: 490 VAIQVSGSFGSRQEEAQRLGRIVRPK----SDGRQAHFYTVVTRDTVDQEFASHRQRFLA 545
Query: 457 NQGYSYKV 464
QGY+Y+V
Sbjct: 546 EQGYAYEV 553
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + +++ + I ++ K+ +P
Sbjct: 222 AGKTLVGAASMARSSTTTLILVTNAVSARQWKEELIRFTSLTEDEIGEYSGSRKEVRP-- 279
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L +WG+++ D+
Sbjct: 280 --VTIATYQVLTTKRKGVY---PHLDLLDAHDWGLIVYDE 314
>gi|50955355|ref|YP_062643.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951837|gb|AAT89538.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 546
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +GF
Sbjct: 299 EVHLLPAPVFK-LTAELQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGF 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
I+ C EV + P Y +R L P K + L+ H G++ +V
Sbjct: 358 ISPAACYEVRIDLPPGERLSYAAAADDERYRLAATAPAKQEVVRRLVERHA--GERILVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + A + P + G T+ ER ++ Q F+ + VSKVA+ S DLPEA
Sbjct: 416 GQYLDQIDELAEALGAPQLTGATAVEERERLYQEFR-EGTTPVLVVSKVANFSVDLPEAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+ + +A FYTLV++DT++ +++ RQRFL
Sbjct: 475 VAIQVSGSYGSRQEEAQRLGRLLRPKESGL----SANFYTLVARDTVDQDFAQNRQRFLA 530
Query: 457 NQGYSYKVI 465
QGYSY ++
Sbjct: 531 EQGYSYTIL 539
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LV A T + L+L + VS QW+ + +T I ++ + K+ KP
Sbjct: 206 GAGKTLVSAGAMATAKTTTLILVTNTVSARQWRDELLKRTTLTAEEIGEYSGQVKEVKP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTY +++ +K + + L +WG+++ D+
Sbjct: 265 ---VTITTYQILTAKRKGEY---AHLALLDALDWGLVVYDE 299
>gi|148273657|ref|YP_001223218.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831587|emb|CAN02555.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 554
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +GF
Sbjct: 307 EVHLLPAPVFK-LTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGF 365
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
I+ +C EV + E Y +R L P K T+ L+ H RG+ +V
Sbjct: 366 ISPAECFEVRIDLPDEDRLVYAAAADDERYRLAATAPAKLDVTRALVERH--RGESILVI 423
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + A + P + G T +ER ++ Q F+ + + VSKVA+ S DLP+A
Sbjct: 424 GQYLEQIDELAEALGAPKLTGATPVAERERLYQAFR-DGTERVLVVSKVANFSVDLPDAT 482
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR + A +A FYTLVS+DT++ +++ RQRFL
Sbjct: 483 VAIQVSGSFGSRQEEAQRLGRLLRPE----ASGMSASFYTLVSRDTVDQDFAQNRQRFLA 538
Query: 457 NQGYSYKVI 465
QGYSY ++
Sbjct: 539 EQGYSYTIL 547
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QW+ + +T + I ++ ++++ KP
Sbjct: 215 AGKTLVGAAAMARAKTTTLILVTNTVSARQWRSELLKRTTLTEDEIGEYSGQSREVKP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L +WG+++ D+
Sbjct: 273 --VTIATYQILTAKRKGEY---AHLSLLDALDWGLVVYDE 307
>gi|119718166|ref|YP_925131.1| helicase domain-containing protein [Nocardioides sp. JS614]
gi|119538827|gb|ABL83444.1| helicase domain protein [Nocardioides sp. JS614]
Length = 546
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTANL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L +K + L+A H G T+V
Sbjct: 358 IAPADCVEVRVTLPSGERLAYATAEPEERYRLASCTHHKIDVVESLVAAHP--GQPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A+ ++ P I G T +ER ++ F+ + ++ + VSKVA+ S DLP A
Sbjct: 416 GQYIEQLDELALALDAPVIKGETKVAERQRLFDAFR-HGEIGLLVVSKVANFSIDLPSAE 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K E A FYT+VS+DT++ +++ RQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPK----TEGRTAHFYTIVSRDTVDAEFAQNRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 206 GAGKTLVGAAAMAEAQATTLILVTNTVSARQWKDELVRRTSLTPAEIGEYSGAVKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ L ++WG+++ D+
Sbjct: 265 ---VTIATYQVMTTKRKGVY---PHLELLDARDWGLIVYDE 299
>gi|377574780|ref|ZP_09803795.1| putative ATP-dependent DNA helicase [Mobilicoccus pelagius NBRC
104925]
gi|377536485|dbj|GAB48960.1| putative ATP-dependent DNA helicase [Mobilicoccus pelagius NBRC
104925]
Length = 543
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 298 EVHLLPAPIFRMTADL-QSRRRLGLTATLVREDGRENDVFSLIGPKRYDAPWKEIEAQGW 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y R L P K + + L+A H + +V
Sbjct: 357 IAPADCVEVRVALGESGRLAYATADPEDRYRLAACAPVKEQVVERLVARHP--DEPVLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P + G T ER ++ + F+ + + VSKVA+ S DLPEA+
Sbjct: 415 GQYLDQLEALAARLDAPLLTGETPLKERTRLYEEFRTG-TLTRLVVSKVANFSVDLPEAS 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRAAHFYTIVTRDTLDADFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIL 538
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A R LVL + VS QW+ + ++ ++ I ++ K+ +P
Sbjct: 205 GAGKTLVGAAAMARARSTTLVLVTNTVSARQWREELLRRTSLTENEIGEYSGAKKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ L ++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTRRKGVY---PHLELLDARDWGLVIYDE 298
>gi|451335877|ref|ZP_21906442.1| DNA repair helicase [Amycolatopsis azurea DSM 43854]
gi|449421769|gb|EMD27176.1| DNA repair helicase [Amycolatopsis azurea DSM 43854]
Length = 548
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + + L+ H G+ T+V
Sbjct: 358 IAPAECTEVRVTLTDAERLAYATAEAEERYKLAATADTKTKVIKSLVDRHP--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEMIGDELDAPVIQGATRNKEREELFDAFRRG-EIRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQISGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVSRDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAHAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + + +++WG+++ D+
Sbjct: 265 ---VTIATYQVVTRKTKGEY---RHLDLFDSRDWGLVVYDE 299
>gi|254387008|ref|ZP_05002287.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
gi|194345832|gb|EDX26798.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
Length = 547
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ H+ G++T+V
Sbjct: 357 IAPADCVEVRVNLTESERLAYATAETEEKYRFCATTATKRKVTEALVRKHQ--GEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIM 538
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAKAKATTLILVTNTVSARQWKHELVKRTSLTEEEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLILYDE 298
>gi|421739802|ref|ZP_16178094.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
gi|406691812|gb|EKC95541.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
Length = 563
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 315 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y ++ ++ +K + T+ L+ H G++T+V
Sbjct: 374 IAPADCVEVRVNLTESERLAYATAESDEKYRFCATTASKQKVTEALVRKHA--GEQTLVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 432 GQYIDQLDELGEHLDAPVIKGDTSNAQREKLFDAFRTG-ELSVLVVSKVANFSIDLPEAT 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 491 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 546
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 547 EQGYAYRIV 555
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 222 GAGKTLVGAGAMAEAKATTLILVTNTVSARQWKSELIKRTSLTEDEIGEYSGTKKEIRP- 280
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 281 ---VTIATYQVLTTKRKGIY---PHLELFDSRDWGLVVYDE 315
>gi|50841956|ref|YP_055183.1| superfamily II DNA/RNA helicase [Propionibacterium acnes KPA171202]
gi|50839558|gb|AAT82225.1| DNA or RNA helicase of superfamily II [Propionibacterium acnes
KPA171202]
Length = 694
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 146/247 (59%), Gaps = 9/247 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 443 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 501
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S + + R + P K + + L+ H RG T+V
Sbjct: 502 IAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPTLVI 559
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP A
Sbjct: 560 GQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREG-QIDLLVVSKVANFSIDLPSAE 618
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQRFL
Sbjct: 619 VAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQRFLA 673
Query: 457 NQGYSYK 463
QGYSY+
Sbjct: 674 EQGYSYR 680
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S +P
Sbjct: 351 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKPVRP-- 408
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 409 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 443
>gi|422435129|ref|ZP_16511987.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327455607|gb|EGF02262.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
Length = 552
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV +S + + C ++ + Y M P K + + L+ H RG T
Sbjct: 360 IAPADCVEVRVSLSES---DRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSK+A+ S DLP
Sbjct: 415 LVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFR-EGQIDLLVVSKIANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQR 528
Query: 454 FLINQGYSYK 463
FL QGYSY+
Sbjct: 529 FLAEQGYSYR 538
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 209 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|289424569|ref|ZP_06426352.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|335053521|ref|ZP_08546358.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
gi|417930924|ref|ZP_12574297.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
gi|289155266|gb|EFD03948.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|333766924|gb|EGL44201.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
gi|340769247|gb|EGR91771.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
Length = 694
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 146/247 (59%), Gaps = 9/247 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 443 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKEIEAQGW 501
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S + + R + P K + + L+ H RG T+V
Sbjct: 502 IAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATLPIKNKVVRDLVERH--RGQPTLVI 559
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A ++ P I G T+ + R +I Q+F+ +++ + VSKVA+ S DLP A
Sbjct: 560 GQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREG-QIDLLVVSKVANFSIDLPSAE 618
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+G +A FY +VS+DT++ ++ RQRFL
Sbjct: 619 VAIQVSGAFGSRQEEAQRLGRLLRPKEGLVAR-----FYAVVSRDTVDTDFASHRQRFLA 673
Query: 457 NQGYSYK 463
QGYSY+
Sbjct: 674 EQGYSYR 680
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF-KLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG TA R L+L + VS QWK + + S A D + S + +P
Sbjct: 351 AGKTVVGATAMSLARCTTLILVTNTVSARQWKEELVRRTSLAPDDIGEYSGSRKQVRP-- 408
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 409 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 443
>gi|19552043|ref|NP_600045.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389706|ref|YP_225108.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|145294985|ref|YP_001137806.1| hypothetical protein cgR_0930 [Corynebacterium glutamicum R]
gi|417972067|ref|ZP_12612982.1| hypothetical protein CgS9114_13620 [Corynebacterium glutamicum
S9114]
gi|418245902|ref|ZP_12872302.1| hypothetical protein KIQ_10406 [Corynebacterium glutamicum ATCC
14067]
gi|21323582|dbj|BAB98209.1| DNA or RNA helicases of superfamily II [Corynebacterium glutamicum
ATCC 13032]
gi|41325041|emb|CAF19522.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum
ATCC 13032]
gi|140844905|dbj|BAF53904.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043556|gb|EGV39245.1| hypothetical protein CgS9114_13620 [Corynebacterium glutamicum
S9114]
gi|354509978|gb|EHE82907.1| hypothetical protein KIQ_10406 [Corynebacterium glutamicum ATCC
14067]
gi|385142963|emb|CCH24002.1| putative helicase [Corynebacterium glutamicum K051]
Length = 557
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +L+ +GF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLESQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ M+ Y +++ R L K + L+ H G T++
Sbjct: 362 IATADCVEIRSTMTDAERMVYATAESADRYRLAATAHTKVAVVRKLLEEHA--GKPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + N P I G T +R + F+ + ++ + VSKVA+ S DLPEA+
Sbjct: 420 GAYLDQLEELGAEFNAPVIDGKTPNKKREALFDQFR-SGSLSVLVVSKVANFSIDLPEAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 479 VAIQVSGTFGSRQEEAQRLGRLLRPKH----DGSEAHFYSIVSRDTLDTEYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 535 EQGYAYRIL 543
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + + L+L + V+ QWK + +T + I ++ E K+ +P
Sbjct: 211 AGKTMVGAASMARAQATTLILVTNTVAGRQWKDELLRRTTLTEDEIGEYSGERKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K ++A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRRTKGEYKA---LELFDSRDWGLIIYDE 303
>gi|452949117|gb|EME54588.1| DNA excision repair protein [Amycolatopsis decaplanina DSM 44594]
Length = 548
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + + L+ H G+ T+V
Sbjct: 358 IAPAECTEVRVTLTDAERLAYATAEAEERYKLAATADTKTKVIKSLVDRHP--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLELIGDELDAPVIQGATRNKEREELFDAFRRG-EIRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQISGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVSRDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAHAKATTLILVTNTVAGRQWKRELVARTSLTEEEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + + +++WG+++ D+
Sbjct: 265 ---VTIATYQVVTRKTKGEY---KHLDLFDSRDWGLVVYDE 299
>gi|404213708|ref|YP_006667902.1| DNA or RNA helicases of superfamily II [Gordonia sp. KTR9]
gi|403644507|gb|AFR47747.1| DNA or RNA helicases of superfamily II [Gordonia sp. KTR9]
Length = 556
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ E +Y V + ++ L K + ++ H+ G +T++
Sbjct: 358 IAPADCVEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILDKHQ--GQQTLII 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDSPVIQGSTKNKEREVLFDRFR-SGELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K+ + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKR----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|398783543|ref|ZP_10547006.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
gi|396995855|gb|EJJ06859.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
Length = 550
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIESQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ +K T+ L+ HE G++T+V
Sbjct: 357 IAPADCVEVRVNLTETERLAYATAETEEKYRYCATTASKQYVTEALVRRHE--GEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T+ ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFR-QGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTKRKGVY---PHLELFDSRDWGLVVYDE 298
>gi|359150058|ref|ZP_09182930.1| ATP-dependent DNA helicase [Streptomyces sp. S4]
Length = 540
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 292 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y ++ ++ +K + T+ L+ H G++T+V
Sbjct: 351 IAPADCVEVRVNLTESERLAYATAESDEKYRFCATTASKQKVTEALVRKHA--GEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 409 GQYIDQLDELGEHLDAPVIKGDTSNAQREKLFDAFRTG-ELSVLVVSKVANFSIDLPEAT 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 468 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 523
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 524 EQGYAYRIV 532
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 200 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKSELIKRTSLTEDEIGEYSGTKKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 258 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLVVYDE 292
>gi|319948963|ref|ZP_08023067.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
gi|319437368|gb|EFV92384.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
Length = 555
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + + L K + ++A H G T+V
Sbjct: 360 IAPADCIEVRVTLTENERMLYATAEAEDKYKLCSTARTKIPVVRKILARHA--GAPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G TS ER ++ F+ N +++T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLEELGAELDAPVIQGSTSNKEREKLFDQFR-NGEISTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 533 EQGYAYRIV 541
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QWK + +T + I ++ E K+ +P
Sbjct: 209 AGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELLARTTLTEDEIGEYSGERKEIRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K A ++ +++WG+M+ D+
Sbjct: 267 --VTIATYQVVTRKTKGVHRA---LELFDSRDWGLMIYDE 301
>gi|291453278|ref|ZP_06592668.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
gi|291356227|gb|EFE83129.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
Length = 545
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 152/249 (61%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y ++ ++ +K + T+ L+ H G++T+V
Sbjct: 356 IAPADCVEVRVNLTESERLAYATAESDEKYRFCATTASKQKVTEALVRKHA--GEQTLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 414 GQYIDQLDELGEHLDAPVIKGDTSNAQREKLFDAFRTG-ELSVLVVSKVANFSIDLPEAT 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 528
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 529 EQGYAYRIV 537
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 205 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKSELIKRTSLTEDEIGEYSGTKKEIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 --VTIATYQVLTTKRKGIY---PHLELFDSRDWGLVVYDE 297
>gi|334338040|ref|YP_004543192.1| helicase domain-containing protein [Isoptericola variabilis 225]
gi|334108408|gb|AEG45298.1| helicase domain-containing protein [Isoptericola variabilis 225]
Length = 559
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 152/250 (60%), Gaps = 10/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 310 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIETQGY 368
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA C EV + PE R Y + + L P K R + ++A H D+ +V
Sbjct: 369 IAPADCVEVRLTL-PEHERMVYATAEPEDKYRLAACAPGKNRVVERIVASHP--DDQVLV 425
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L+ + ++ P I G T+ ER ++ Q F+ + +++ + VSKVA+ S DLPEA
Sbjct: 426 IGQYLDQLEELSEHLDAPLITGATTVRERQRLFQAFR-SGEISRLVVSKVANFSIDLPEA 484
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V IQ+S GSR++EAQRLGRI+R K A+ A FY +V++DT++ ++ RQRFL
Sbjct: 485 SVAIQVSGSFGSRQEEAQRLGRIMRPK----ADGRTAHFYAVVARDTVDQEFAAHRQRFL 540
Query: 456 INQGYSYKVI 465
QGY+Y+++
Sbjct: 541 AEQGYAYRIV 550
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A L+L + VS QW+ + +T + I ++ K+ KP
Sbjct: 218 AGKTIVGAGAMAKSGTTTLILVTNTVSARQWRDELVRRTTLTEDEIGEYSGARKEIKP-- 275
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ L ++WG+++ D+
Sbjct: 276 --VTIATYQVLTTKRKGVY---SHLELLDARDWGLIVYDE 310
>gi|339011047|ref|ZP_08643615.1| putative ATP-dependent helicase [Brevibacillus laterosporus LMG
15441]
gi|338772035|gb|EGP31570.1| putative ATP-dependent helicase [Brevibacillus laterosporus LMG
15441]
Length = 563
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 148/250 (59%), Gaps = 11/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ +I Q+ +LGLTATL+RED K ++ LIGPK YE W L+ +G+
Sbjct: 313 EVHMLPAPIFKMTSSI-QAKRRLGLTATLVREDGKEDEVFSLIGPKKYEMPWKALEAQGW 371
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA C EV P+ P YRE Y T ++ L NP K Q L+ H + D ++
Sbjct: 372 IATAFCKEVRLPL-PSIYREAYAFSGTREKYRLAAENPIKVNWVQKLLRQH--KDDHILI 428
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L+ A + P I G T + +R + + FK ++ + +SKVA+ + DLP+A
Sbjct: 429 IGQYIKQLELVANTLGLPLITGKTPEEDRGRYYEMFKRG-EIKQLVISKVANFAVDLPDA 487
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
NV IQIS GSR++EAQRLGRILR K A+FYTLVS+DT E ++ KRQ FL
Sbjct: 488 NVAIQISGTFGSRQEEAQRLGRILRPKATN-----QAYFYTLVSRDTREQEFASKRQMFL 542
Query: 456 INQGYSYKVI 465
+ QGY Y++I
Sbjct: 543 LEQGYHYQII 552
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ L+L S SV QW ++ +T M+ +T E K+ +P
Sbjct: 219 AGKTIIGIGTMSRFETATLILTTSTTSVRQWINEIITKTTLTADMVGEYTGEQKEVRP-- 276
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ VTTY M++ Q+ S E M + WG+++ D+
Sbjct: 277 --VTVTTYQMVTSRQRGSEEFPH-MNLFTDYNWGLIIYDE 313
>gi|326773086|ref|ZP_08232370.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
gi|326637718|gb|EGE38620.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
Length = 564
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 315 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L +P K + L+A HE G+ +V
Sbjct: 374 IAPAICTEVRLTLDAGERMAYATAEPEERYRLAACSPRKLPIIEALLARHE--GESALVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L A ++ P I G T+ ER ++ F+ ++ T+ VSKVA+ S DLP A+
Sbjct: 432 GQYVDQLTEIAEHLDAPVITGATTVRERQRLYDAFRCG-EIRTLVVSKVANFSIDLPGAS 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K+ + A FYT+V++DT + Y+ RQRFL
Sbjct: 491 VAIQVSGSFGSRQEEAQRLGRIVRPKE----DGRQAHFYTVVARDTADQEYATHRQRFLA 546
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 547 EQGYAYAIL 555
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + ++T + I ++ K+ +P
Sbjct: 223 AGKTLVGAASMAKSSTTTLILVTNAVSARQWKEELIRFTTLTEEEIGEYSGSRKEVRP-- 280
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L + +WG+++ D+
Sbjct: 281 --VTIATYQVLTTRRKGVY---PHLDLLDSHDWGLIVYDE 315
>gi|421871952|ref|ZP_16303572.1| type III restriction enzyme, res subunit [Brevibacillus
laterosporus GI-9]
gi|372459209|emb|CCF13121.1| type III restriction enzyme, res subunit [Brevibacillus
laterosporus GI-9]
Length = 563
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 148/250 (59%), Gaps = 11/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ +I Q+ +LGLTATL+RED K ++ LIGPK YE W L+ +G+
Sbjct: 313 EVHMLPAPIFKMTSSI-QAKRRLGLTATLVREDGKEDEVFSLIGPKKYEMPWKALEAQGW 371
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA C EV P+ P YRE Y T ++ L NP K Q L+ H + D ++
Sbjct: 372 IATAFCKEVRLPL-PSIYREAYAFSGTREKYRLAAENPIKVNWVQKLLRQH--KDDHILI 428
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L+ A + P I G T + +R + + FK ++ + +SKVA+ + DLP+A
Sbjct: 429 IGQYIKQLELVANTLGLPLITGKTPEEDRGRYYEMFKRG-EIKQLVISKVANFAVDLPDA 487
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
NV IQIS GSR++EAQRLGRILR K A+FYTLVS+DT E ++ KRQ FL
Sbjct: 488 NVAIQISGTFGSRQEEAQRLGRILRPKATN-----QAYFYTLVSRDTREQEFASKRQMFL 542
Query: 456 INQGYSYKVI 465
+ QGY Y++I
Sbjct: 543 LEQGYHYQII 552
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ L+L S SV QW ++ +T M+ +T E K+ +P
Sbjct: 219 AGKTIIGIGTMSRFETATLILTTSTTSVRQWINEIITKTTLTADMVGEYTGEQKEVRP-- 276
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ VTTY M++ Q+ S E M + WG+++ D+
Sbjct: 277 --VTVTTYQMVTSRQRGSEEFPH-MNLFTDYNWGLIIYDE 313
>gi|269125068|ref|YP_003298438.1| helicase domain-containing protein [Thermomonospora curvata DSM
43183]
gi|268310026|gb|ACY96400.1| helicase domain protein [Thermomonospora curvata DSM 43183]
Length = 550
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W E++ +G+
Sbjct: 299 EVHLLPAPIFRMTAEL-QARRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKEMEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + R L K R + L+A H RG++ +V
Sbjct: 358 IAPADCVEVRVTLTESERLAYATAEPEDRYRLCATAHTKTRVIESLVARH--RGEQILVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + ++ P + G T ER ++ +F+ + ++ + VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDELSALLDAPVVKGDTRIRERERLFASFR-SGELPVLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A FY +V++DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGAYGSRQEEAQRLGRVLRPKSSG----KGARFYAVVARDTLDQEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A R L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 207 AGKTIVGAAAMARARATTLILVTNTVSAHQWKQELLRRTSLTEDEIGEYSGARKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K ++ ++ L ++WG+++ D+
Sbjct: 265 --VTIATYQIMTTRRKGAY---PHLELLDARDWGLVIYDE 299
>gi|357411964|ref|YP_004923700.1| helicase domain-containing protein [Streptomyces flavogriseus ATCC
33331]
gi|320009333|gb|ADW04183.1| helicase domain protein [Streptomyces flavogriseus ATCC 33331]
Length = 547
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ K + T+ L+ H+ G++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEAEEKYRFCATTDTKRKVTEALVRKHQ--GEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGIY---PHLELFDSRDWGLVIYDE 298
>gi|443304196|ref|ZP_21033984.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
H4Y]
gi|442765760|gb|ELR83754.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
H4Y]
Length = 542
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++A H G++T+V
Sbjct: 351 IAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVHTKIAVVKSILARHP--GEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ +VNT+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 199 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELIARTSLTEDEIGEYSGERKEIRP- 257
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 ---VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|383821970|ref|ZP_09977203.1| DNA or RNA helicase of superfamily protein II [Mycobacterium phlei
RIVM601174]
gi|383332268|gb|EID10751.1| DNA or RNA helicase of superfamily protein II [Mycobacterium phlei
RIVM601174]
Length = 542
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H +G++T+V
Sbjct: 351 IAPAECIEVRVTMTDNERMLYATAEPDERYKLCSTAHTKIAVVKSILERH--KGEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T SER + F+ + +++T+ VSKVA+ S DLPEA+
Sbjct: 409 GAYLDQLEELGRELDAPVIQGSTKNSEREALFDRFR-SGEISTLVVSKVANFSIDLPEAS 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYVI 531
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ ++ I ++ E K+ +P
Sbjct: 199 GAGKTLVGAAAMAKASATTLILVTNTVAGRQWKRELINRTSLTENEIGEYSGERKEIRP- 257
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 258 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLIIYDE 292
>gi|296169623|ref|ZP_06851243.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895889|gb|EFG75584.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 549
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L +K + +++ H G++T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTAHSKIAVVKSVLSRHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T ER ++ F+ +V+T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGAELNAPVIQGSTRTKEREELFDAFRRG-EVSTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ + + ++ E K+ +P
Sbjct: 207 AGKTLVGAAAMAKASATTLILVTNVVAARQWKRELVARTSLTEDEVGEYSGERKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 265 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 299
>gi|379745585|ref|YP_005336406.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
gi|379752870|ref|YP_005341542.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-02]
gi|379760310|ref|YP_005346707.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-64]
gi|406029195|ref|YP_006728086.1| DNA repair helicase RAD25 [Mycobacterium indicus pranii MTCC 9506]
gi|378797949|gb|AFC42085.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
gi|378803086|gb|AFC47221.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-02]
gi|378808252|gb|AFC52386.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-64]
gi|405127742|gb|AFS12997.1| DNA repair helicase RAD25 [Mycobacterium indicus pranii MTCC 9506]
Length = 549
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++A H G++T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVHTKIAVVKSILAKHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ +VNT+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELIARTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 299
>gi|409358860|ref|ZP_11237219.1| ATP-dependent DNA helicase [Dietzia alimentaria 72]
Length = 555
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + + L K + ++A H G T+V
Sbjct: 360 IAPADCVEVRVTLTENERMLYATAEAEDKYKLCSTARTKIPVVKKILARHA--GAPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G TS ER ++ F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLEELGAELDAPVIQGSTSNKEREKLFNAFRAG-EISTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 533 EQGYAYRIV 541
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + +T + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMARAKATTLILVTNTVAGRQWKRELLARTTLTEDEIGEYSGERKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K A ++ +Q+WG+M+ D+
Sbjct: 267 ---VTIATYQVVTRKTKGVHRA---LELFDSQDWGLMIYDE 301
>gi|325066723|ref|ZP_08125396.1| type III restriction protein res subunit [Actinomyces oris K20]
Length = 564
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 315 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L +P K L+A HE G+ +V
Sbjct: 374 IAPAICTEVRLTLDAGERMAYATAEPDERYRLAACSPRKLPIIDALLARHE--GESALVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L A ++ P I G T+ ER ++ F+ ++ T+ VSKVA+ S DLP A+
Sbjct: 432 GQYVDQLTEIAEHLDAPVITGATTVRERQRLYDAFRCG-EIRTLVVSKVANFSIDLPGAS 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K+ + A FYT+V++DT + Y+ RQRFL
Sbjct: 491 VAIQVSGSFGSRQEEAQRLGRIVRPKE----DGRQAHFYTVVARDTADQEYAAHRQRFLA 546
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 547 EQGYAYAII 555
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + ++T + I ++ K+ +P
Sbjct: 223 AGKTLVGAASMAKSSTTTLILVTNAVSARQWKEELIRFTTLTEEEIGEYSGSRKEVRP-- 280
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L + +WG+++ D+
Sbjct: 281 --VTIATYQVLTTRRKGVY---PHLDLLDSHDWGLIVYDE 315
>gi|385680851|ref|ZP_10054779.1| DNA/RNA helicase, superfamily II [Amycolatopsis sp. ATCC 39116]
Length = 545
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y ++ + L K + ++ H GD+T+V
Sbjct: 358 IAPAECIEVRVTLTDNERLLYATAESEDKYKLAATARTKIPVVKSILDKHA--GDQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++N P I G T ER + F+ +++ + VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLEELGAELNAPVIQGSTRNKEREALFDAFRRG-EIDKLVVSKVANFSIDLPEAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----ADGRQAHFYSVVSRDTLDTEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y +
Sbjct: 531 EQGYAYTI 538
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMARAQATTLILVTNTVAGRQWKRELVARTSLTEDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRKSKGEY---KHLELFDSRDWGLIVYDE 299
>gi|387874253|ref|YP_006304557.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
MOTT36Y]
gi|386787711|gb|AFJ33830.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
MOTT36Y]
Length = 542
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++A H G++T+V
Sbjct: 351 IAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVHTKIAVVKSILAKHP--GEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ +VNT+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 199 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELIARTSLTEDEIGEYSGERKEIRP- 257
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 ---VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|226187251|dbj|BAH35355.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
Length = 552
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M+ Y V + +R L K + ++A H T+V
Sbjct: 360 IAPADCVEVRVTMTDAERMSYAVAEPEERYKLCSTAHTKIAVVKSILAKHP--DSPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G T ER + F+ N ++ T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLDELGEALNAPVIKGSTKNKEREILFDQFR-NGEIQTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 301
>gi|254818296|ref|ZP_05223297.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
Length = 549
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++A H G++T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVHTKIAVVKSILAKHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ +VNT+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELIARTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 299
>gi|309812293|ref|ZP_07706048.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
gi|308433598|gb|EFP57475.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
Length = 543
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED++ D+ LIGPK Y+A W +++ +G+
Sbjct: 298 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDNREDDVFSLIGPKRYDAPWKDIESQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S Y + +R K + ++A H+ G+ T+V
Sbjct: 357 IAPADCVEVRVGLSDSDRMAYATSEPDERYRFASCATVKDPVVERIVAKHD--GEPTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N I G TS + R ++ Q F+ + ++ + VSKVA+ S DLPEA+
Sbjct: 415 GQYLDQLETVAGRLNADLITGETSVAVRQKLFQQFR-DGEITKLVVSKVANFSIDLPEAS 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +QIS GSR++EAQRLGR+LR K A+ A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAVQISGTFGSRQEEAQRLGRVLRPK----ADGRTAHFYSIVTRDTVDADFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
>gi|302339342|ref|YP_003804548.1| helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636527|gb|ADK81954.1| helicase domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 557
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ ++GLTATL+RED + D+ L+GPK Y+ W EL+++G+
Sbjct: 314 EVHLLPAPVFR-VTAEIQALRRVGLTATLVREDGREDDVFSLVGPKRYDVPWRELEQKGW 372
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ P+ Y V + + NP K T+ LI H D ++
Sbjct: 373 IAEAHCHEIRVPLPDSLKIGYAVADKRGKYRIASENPVKIEITKELILNHT--DDHILII 430
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ LK A ++ P I G T ER +I ++F+ K I VSKVA+ + DLP+AN
Sbjct: 431 GQYLNQLKEIAAAISAPLITGKTPNKEREEIYESFR-EGKTRVIVVSKVANFAIDLPDAN 489
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E + FY+LVS+ T E ++ RQ+FL
Sbjct: 490 VAIQVSGTFGSRQEEAQRLGRILRPK------ERGSTFYSLVSRYTTEEEFAANRQKFLT 543
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 544 EQGYKYQI 551
>gi|229488859|ref|ZP_04382725.1| DNA or RNA helicase of superfamily II [Rhodococcus erythropolis
SK121]
gi|453071394|ref|ZP_21974545.1| ATP-dependent DNA helicase [Rhodococcus qingshengii BKS 20-40]
gi|229324363|gb|EEN90118.1| DNA or RNA helicase of superfamily II [Rhodococcus erythropolis
SK121]
gi|452759438|gb|EME17801.1| ATP-dependent DNA helicase [Rhodococcus qingshengii BKS 20-40]
Length = 552
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M+ Y V + +R L K + ++A H T+V
Sbjct: 360 IAPADCVEVRVTMTDAERMSYAVAEPEERYKLCSTAHTKIAVVKSILAKHP--DSPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G T ER + F+ N ++ T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLDELGEALNAPVIKGSTKNKEREILFDQFR-NGEIQTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 301
>gi|357391321|ref|YP_004906162.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
gi|311897798|dbj|BAJ30206.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
Length = 543
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ K R + L+ H GD+T+V
Sbjct: 357 IAPADCCEVRVTLTDSERLAYATAEPEEKYRFCSTTATKRRVVERLVEKHA--GDQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G TS ++R ++ F+ + ++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEALGAPVIKGETSNAQREKLFDAFR-SKEIGVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHAAHFYSVVARDTVDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAAAMAEAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ + WG+++ D+
Sbjct: 264 ---VTIATYQVMTTKRKGVY---AHLELFDARNWGLVVYDE 298
>gi|383806633|ref|ZP_09962195.1| DNA or RNA helicase of superfamily II [Candidatus Aquiluna sp.
IMCC13023]
gi|383299803|gb|EIC92416.1| DNA or RNA helicase of superfamily II [Candidatus Aquiluna sp.
IMCC13023]
Length = 542
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W +++ +G+
Sbjct: 297 EVHLLPAPIFKMTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKDIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + E EY + R + K + ++ H +G+ T++
Sbjct: 356 IAPANCFEVRVSLPDEARMEYAISDQESRFRIASTATAKLEIMRKILKKH--KGEPTLII 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + A + P + G T R ++ ++F+ N +++T+ VSKVA+ S DLPEA+
Sbjct: 414 GQYLSQIAEVAEGLGVPKLTGETPVDVREELFRSFR-NGEISTLVVSKVANFSVDLPEAS 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGR+LR K+ + +A FYT+V+ DT+E +++ RQRFL
Sbjct: 473 VAIQISGAFGSRQEEAQRLGRLLRPKQ----DGRSAAFYTIVAADTVEQDFAQNRQRFLA 528
Query: 457 NQGYSYKVI 465
QGYSY++I
Sbjct: 529 EQGYSYEII 537
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG V+ L+L + V+ QW+ + ++ D I ++ +K+
Sbjct: 205 AGKTMVGAAIMADVKANTLILVTNTVAARQWRDELLEKTSLTDEDIAEYSGSSKNL---A 261
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L ++WG+++ D+
Sbjct: 262 PVTIATYQILTTKRKNEF---THLALLNARDWGLIIYDE 297
>gi|256833263|ref|YP_003161990.1| helicase domain-containing protein [Jonesia denitrificans DSM
20603]
gi|256686794|gb|ACV09687.1| helicase domain protein [Jonesia denitrificans DSM 20603]
Length = 558
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 305 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIEAQGY 363
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ +S Y + + P K ++++A H G+ T+V
Sbjct: 364 IAPADCTEIRFTLSNAERLTYATAEPDDKYRFAASAPAKTHIVEHIVAQHA--GEPTLVI 421
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 422 GQYLDQLEDIAQRLDAPLITGKTPVKERQRLFDAFRAG-ELTTLVVSKVANFSLDLPEAT 480
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ +Q+S GSR++EAQRLGRI+R K A+ A FYT+V++DT++ ++ RQRFL
Sbjct: 481 IAVQVSGSFGSRQEEAQRLGRIMRPK----ADGRRAHFYTIVARDTVDQDFAAHRQRFLA 536
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 537 EQGYAYTIV 545
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QW+ + ++ + I ++ K+ +P
Sbjct: 213 AGKTLVGAAAMANISTTTLILVTNTVSARQWRTELLARTSLTEDEIGEYSGTTKEIRP-- 270
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K ++ + ++WG+++ D+
Sbjct: 271 --VTIATYQVLTSRRKGAY---THLDLFGARDWGLIIYDE 305
>gi|416374985|ref|ZP_11683267.1| DNA repair helicase [Crocosphaera watsonii WH 0003]
gi|357266616|gb|EHJ15220.1| DNA repair helicase [Crocosphaera watsonii WH 0003]
Length = 555
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + +D+ LIGPK Y+ W EL+ +GF
Sbjct: 315 EVHLLPAPVFR-ITAELQARRRLGLTATLIREDGRESDVFALIGPKRYDVPWRELESQGF 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ P E Y V ++ + NP K + L+ + G K +V
Sbjct: 374 IAQAICREIRVPQDSEEQMRYAVAPRRQQFRVASENPRKLEVVRQLLI--DEIGHKILVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + LK A P I G T+Q +R + Q F+ + +++ + +S+V + + DLP+A+
Sbjct: 432 GEYIEQLKTLAELTKFPLITGKTTQKQREVLYQKFR-DGEIDGLVLSRVGNFALDLPDAD 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQ+S GSR++EAQRLGRILR K ++ A FYTLVS+ T E ++R RQ FL
Sbjct: 491 VLIQVSGKYGSRQEEAQRLGRILRPK----SDGRTARFYTLVSERTCEEDFARHRQLFLT 546
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 547 EQGYGYQI 554
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ A V++ L+L S SV QW+ + + + +I ++ E K
Sbjct: 221 AGKTIVGMAAMAQVQENTLILTTSLTSVRQWRRELLDKTELPEEVIAEYSGEMKAT---G 277
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY ++++ + + Q + WG+++ D+
Sbjct: 278 PITLATYQILTYRPHKDADFPH-FSLFQARSWGLIIYDE 315
>gi|403715128|ref|ZP_10940913.1| putative ATP-dependent DNA helicase [Kineosphaera limosa NBRC
100340]
gi|403210896|dbj|GAB95596.1| putative ATP-dependent DNA helicase [Kineosphaera limosa NBRC
100340]
Length = 547
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 298 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKDIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + Y + R L P K + ++ H RG + +V
Sbjct: 357 IAPADCVEIRVSLPDAERMAYATADPADRYRLASCAPVKEAVVRRIVESH--RGAQVLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G TS ++R ++ F+ ++ + VSKVA+ S DLPEA+
Sbjct: 415 GQYLDQLQILADELDAPLITGETSVAQRQKLFTAFRTG-EIGLLVVSKVANFSIDLPEAS 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K+ A A FYT+V++DT++ ++ RQRFL
Sbjct: 474 VAVQVSGTFGSRQEEAQRLGRVLRPKRDA----GTAHFYTVVTRDTVDADFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
>gi|418046889|ref|ZP_12684977.1| type III restriction protein res subunit [Mycobacterium rhodesiae
JS60]
gi|353192559|gb|EHB58063.1| type III restriction protein res subunit [Mycobacterium rhodesiae
JS60]
Length = 549
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 147/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y V + +R L +K + ++A H G+ T+V
Sbjct: 358 IAPAECIEVRVTMTDNERMLYAVAEPEERYRLCSTAHSKIAVVKSILAKHP--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T +ER + F+ + +V T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGAELDAPVIQGSTKNAEREALFDAFR-SGEVKTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
>gi|339628705|ref|YP_004720348.1| DEAD/DEAH box helicase [Sulfobacillus acidophilus TPY]
gi|379008866|ref|YP_005258317.1| type III restriction protein res subunit [Sulfobacillus acidophilus
DSM 10332]
gi|339286494|gb|AEJ40605.1| DEAD/DEAH box helicase-like protein [Sulfobacillus acidophilus TPY]
gi|361055128|gb|AEW06645.1| type III restriction protein res subunit [Sulfobacillus acidophilus
DSM 10332]
Length = 574
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA MFR ++ Q+ +LGLTATL+RED D+ LIGPK ++ W L+ G+
Sbjct: 309 EVHLLPAPMFRLTASL-QARRRLGLTATLIREDGHADDVFSLIGPKRFDMPWKTLESEGW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + P Y + +++ L NP K + L+ +H + D ++
Sbjct: 368 IATAHCREIRVGLEPGLRDRYASAEEPEQIRLAAENPAKIGVIRELLTHHAQ--DHVLII 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G T ER ++ Q F+ + ++ + VSKV + + DLP+AN
Sbjct: 426 GQYLSQLERLAEELHAPLITGKTPARERERLYQAFR-DGQLPVLMVSKVGNFAIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K ++ A FYT+VS+DT E +++KRQ FL
Sbjct: 485 VAIQISGAFGSRQEEAQRLGRILRPK----SDGGEATFYTIVSEDTKEQLFAQKRQLFLA 540
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 541 EQGYRYEI 548
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG+ + L+L S ++ QWK + +T D +I +++ K KP
Sbjct: 216 GAGKTVVGMGVMERAQTHTLILTTSMAALHQWKRELLDKTTLTDDVIGEYSAAVKHIKP- 274
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTY M++H + + Q L WG+++ D+
Sbjct: 275 ---VTLTTYQMLTHRKHGDY---VHFQELDRAPWGLIIYDE 309
>gi|67920111|ref|ZP_00513631.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
gi|67857595|gb|EAM52834.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
Length = 555
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + +D+ LIGPK Y+ W EL+ +GF
Sbjct: 315 EVHLLPAPVFR-ITAELQARRRLGLTATLIREDGRESDVFALIGPKRYDVPWRELESQGF 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ P E Y V ++ + NP K + L+ + G K +V
Sbjct: 374 IAQAICREIRVPQDSEEQMRYAVAPRRQQFRVAAENPRKLEVVRQLLI--DEIGHKILVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + L+ A P I G T+Q +R + Q F+ + +++ + +S+V + + DLP+A+
Sbjct: 432 GEYIEQLRTLAELTKFPLITGKTTQKQREVLYQKFR-SGEIDGLVLSRVGNFALDLPDAD 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQ+S GSR++EAQRLGRILR K ++ A FYTLVS+ T E ++R RQ FL
Sbjct: 491 VLIQVSGKYGSRQEEAQRLGRILRPK----SDGRTARFYTLVSERTCEEDFARHRQLFLT 546
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 547 EQGYGYQI 554
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ A V++ L+L S SV QW+ + + + +I ++ E K
Sbjct: 221 AGKTIVGMAAMAQVQENTLILTTSLTSVRQWRRELLDKTELPEEVIAEYSGEMKAT---G 277
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY ++++ + + Q + WG+++ D+
Sbjct: 278 PITLATYQILTYRPHKDADFPH-FSLFQARSWGLIIYDE 315
>gi|443674395|ref|ZP_21139427.1| putative ATP-dependent DNA helicase [Rhodococcus sp. AW25M09]
gi|443413022|emb|CCQ17766.1| putative ATP-dependent DNA helicase [Rhodococcus sp. AW25M09]
Length = 551
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y V + +R L K + ++A H+ G T+V
Sbjct: 360 IAPAECIEVRVTLTDAERMSYAVAEPEERYKLCSTAHTKIAVVKSILAKHQ--GAPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G T ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLNELGEALNAPVIQGSTKNKEREVLFDAFR-KGEIQTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMARAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 301
>gi|325962248|ref|YP_004240154.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468335|gb|ADX72020.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 548
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 149/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIESQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + + + L + +K + + L+A H G++ +V
Sbjct: 358 IAPADCVEVRVDLPKDERVAYAMADDADKYRLCSTSESKTQVVEQLVARHA--GEQLLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS R ++ F+ + T+ VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDDLGERLQAPVIKGDTSVKVRQKLFDAFRAG-HIQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR KK A A FY+LV++DT++ ++ KRQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPKKDGRA----ARFYSLVARDTLDQEFAAKRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIM 539
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A T L+L + V+ QWK + ++ + I ++ K+ +P
Sbjct: 206 GAGKTLVGAAAMATGSTTTLILVTNTVAARQWKDELLKRTSLTEDEIGEYSGAVKEVRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++ T KR ++ + +WG+++ D+
Sbjct: 265 ---VTIATYQVL--TTKRGGLYPH-LELVDGHDWGLIIYDE 299
>gi|340793573|ref|YP_004759036.1| hypothetical protein CVAR_0611 [Corynebacterium variabile DSM
44702]
gi|340533483|gb|AEK35963.1| hypothetical protein CVAR_0611 [Corynebacterium variabile DSM
44702]
Length = 548
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 149/252 (59%), Gaps = 8/252 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +GF
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKDIEAQGF 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +++ L +P K + ++A H G+ +V
Sbjct: 362 IAPADCTEVRVQLGDNDRMIYATAEQNEKYRLAACSPVKTDVVRKILAKHA--GEPALVI 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T R ++ F+ +++ + VSKVA+ S DLP A+
Sbjct: 420 GAYIDQLEELGEELDAPVIDGRTPNKRREELFDAFRAG-ELSVLVVSKVANFSIDLPGAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K A A+FY++V++DT++ Y+ RQRFL
Sbjct: 479 VAIQISGTFGSRQEEAQRLGRILRPKPDGSA----AYFYSVVTRDTLDADYAAHRQRFLA 534
Query: 457 NQGYSYKVITKL 468
QGY Y++I +
Sbjct: 535 EQGYGYRIIDSI 546
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + ++ + I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKSKTTTLILVTNTVAGRQWRDELIRRTSLTEDEIGEYSGERKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGVFRA---LELFDSRDWGLIIYDE 303
>gi|170783064|ref|YP_001711398.1| DNA repair helicase [Clavibacter michiganensis subsp. sepedonicus]
gi|169157634|emb|CAQ02832.1| putative DNA repair helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 546
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +GF
Sbjct: 299 EVHLLPAPVFK-LTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGF 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
I+ +C EV + + Y +R L P K T+ L+ H RG+ +V
Sbjct: 358 ISPAECFEVRIDLPDDERLVYAAAADDERYRLAATAPAKLDVTRALVERH--RGESILVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + + + P + G T +ER ++ Q F+ + + VSKVA+ S DLP+A
Sbjct: 416 GQYLEQIDELSEALGAPKLTGATPVAERERLYQAFR-DGTERVLVVSKVANFSVDLPDAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR + + +A FYTLVS+DT++ +++ RQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPEASGL----SASFYTLVSRDTVDQDFAQNRQRFLA 530
Query: 457 NQGYSYKVI 465
QGYSY ++
Sbjct: 531 EQGYSYTIL 539
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QW+ + +T + I ++ ++++ KP
Sbjct: 207 AGKTLVGAAAMARAKTTTLILVTNTVSARQWRSELLKRTTLTEDEIGEYSGQSREVKP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L +WG+++ D+
Sbjct: 265 --VTIATYQILTAKRKGEY---AHLALLDALDWGLVVYDE 299
>gi|404421548|ref|ZP_11003263.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
gi|403658859|gb|EJZ13553.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
Length = 542
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H G+ T+V
Sbjct: 351 IAPAECIEVRVTMTDNERMLYATAEPEERYKLCSTVHTKIAVVRSILERHP--GEPTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++N P I G T +ER + F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 409 GAYLDQLEELGQELNAPVIQGSTKNAEREALFDAFRRG-EISTLVVSKVANFSIDLPEAS 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K G A FY++VS+D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPKAGG----GGAVFYSVVSRDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYVI 531
>gi|404260342|ref|ZP_10963634.1| putative ATP-dependent DNA helicase [Gordonia namibiensis NBRC
108229]
gi|403401180|dbj|GAC02044.1| putative ATP-dependent DNA helicase [Gordonia namibiensis NBRC
108229]
Length = 556
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + ++ L K + ++ H +G +T+V
Sbjct: 358 IAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILNKH--KGQQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|343928179|ref|ZP_08767634.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC
16433]
gi|343761877|dbj|GAA14560.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC
16433]
Length = 559
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + ++ L K + ++ H +G +T+V
Sbjct: 361 IAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILNKH--KGQQTLVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 419 GAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANFSIDLPEAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 478 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 533
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 534 EQGYAYRI 541
>gi|409389806|ref|ZP_11241607.1| putative ATP-dependent DNA helicase [Gordonia rubripertincta NBRC
101908]
gi|403200066|dbj|GAB84841.1| putative ATP-dependent DNA helicase [Gordonia rubripertincta NBRC
101908]
Length = 556
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + ++ L K + ++ H+ G +T+V
Sbjct: 358 IAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILNKHQ--GQQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|343524024|ref|ZP_08760984.1| type III restriction enzyme, res subunit [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343399005|gb|EGV11530.1| type III restriction enzyme, res subunit [Actinomyces sp. oral
taxon 175 str. F0384]
Length = 564
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 315 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L +P K + L+A HE G+ +V
Sbjct: 374 IAPAICTEVRLTLDAGERMAYATAEPEERYRLAACSPRKLPIIEALLARHE--GESALVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L A + P I G T+ ER ++ F+ ++ T+ VSKVA+ S DLP A+
Sbjct: 432 GQYVDQLTEIAEHLGAPVITGATTVRERQRLYDAFRCG-EIRTLVVSKVANFSIDLPGAS 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K+ + A FYT+V++DT + ++ RQRFL
Sbjct: 491 VAIQVSGSFGSRQEEAQRLGRIVRPKE----DGRQAHFYTVVARDTADQEFAAHRQRFLA 546
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 547 EQGYAYAII 555
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + ++T + I ++ K+ +P
Sbjct: 223 AGKTLVGAASMAKSSTTTLILVTNAVSARQWKEELIRFTTLTEEEIGEYSGSRKEVRP-- 280
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L + +WG+++ D+
Sbjct: 281 --VTIATYQVLTTRRKGVY---PHLDLLDSHDWGLIVYDE 315
>gi|323359212|ref|YP_004225608.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
StLB037]
gi|323275583|dbj|BAJ75728.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
StLB037]
Length = 549
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 151/250 (60%), Gaps = 10/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +GF
Sbjct: 299 EVHLLPAPVFK-LTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGF 357
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
I+ C EV + P + R EY R L P K + L+ H ++ +V
Sbjct: 358 ISPAACYEVRIDL-PAYERLEYAAAADEDRYRLAATAPAKIDVVRRLVDRHP--DERILV 414
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ + + ++ P I G T +ER ++ Q F++ +++ + VSKVA+ S DLPEA
Sbjct: 415 IGQYLDQIDELSEALDAPKITGATPVAEREELFQAFRVG-EISLLIVSKVANFSVDLPEA 473
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V IQ+S GSR++EAQRLGR+LR K+ + A FYTL+++DT++ +++ RQRFL
Sbjct: 474 SVAIQVSGSFGSRQEEAQRLGRLLRPKQS----NHTASFYTLIARDTVDQDFAQNRQRFL 529
Query: 456 INQGYSYKVI 465
QGY+Y ++
Sbjct: 530 AEQGYAYTIL 539
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A R L+L + VS QW+ + +T I ++ + K+ KP
Sbjct: 207 AGKTLVGAGAMAETRTTTLILVTNTVSARQWRDELLRRTTLTPEEIGEYSGQVKEVKP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L +WG++L D+
Sbjct: 265 --VTIATYQILTAKRKGEY---AHLALLDALDWGLVLYDE 299
>gi|429220366|ref|YP_007182010.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131229|gb|AFZ68244.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 568
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 150/249 (60%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + VQ+ +LGLTATL+RED + D+ LIGPK Y+ W +L+ RG+
Sbjct: 310 EVHLLPAPIFR-LTAEVQARRRLGLTATLIREDGREGDVFSLIGPKRYDLPWKDLEGRGW 368
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA +C EV + PE R Y + + ++ L NP K T+ ++A H G T+V
Sbjct: 369 IATAECCEVRVRL-PEHERLAYALAEEREKFRLAAENPRKRDLTRAILALHA--GQPTLV 425
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L+ A + P I G T Q ER ++ F+ +++T+ +SKV + + DLPEA
Sbjct: 426 IGQYLGQLELIAQDLEAPLITGQTPQRERERMFDAFR-EGRLSTLVLSKVGNFALDLPEA 484
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V++Q+S GSR++EAQRLGR+LR K+ +A FY+LV+++T E ++ RQ FL
Sbjct: 485 QVMVQVSGTFGSRQEEAQRLGRLLRPKRHG----ESAQFYSLVTRETREEDFAHHRQLFL 540
Query: 456 INQGYSYKV 464
QGY+Y V
Sbjct: 541 AEQGYAYHV 549
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 36 PSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM 95
P AGK++VG+ A V +R LVL + SV QW+ + ++ + + K
Sbjct: 214 PGAGKTVVGMVAMSLVGQRTLVLTTNRTSVNQWRRELLDKTSLSPDDVAEY---GPGKHR 270
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY M++ K S E M+ + Q+WG+++ D+
Sbjct: 271 LAPVTLATYQMLTARSKNSAEYPH-MELFRAQDWGLIVYDE 310
>gi|333989429|ref|YP_004522043.1| DNA helicase Ercc3 [Mycobacterium sp. JDM601]
gi|333485397|gb|AEF34789.1| DNA helicase Ercc3 [Mycobacterium sp. JDM601]
Length = 550
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 300 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 358
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + + +R L +K + ++ H G++T+V
Sbjct: 359 IAPAECIEVRVTMTESERMTYAIAEPEERYKLCSTVHSKIAVVRSILKQHP--GEQTLVI 416
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER ++ F+ +V+T+ VSKVA+ S DLPEA+
Sbjct: 417 GAYLDQLEELGEQLDAPVIQGSTRTAEREKLFDAFR-KGEVSTLVVSKVANFSIDLPEAS 475
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 476 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVARDSLDAEYAAHRQRFLA 531
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 532 EQGYGYII 539
>gi|453052341|gb|EME99825.1| ATP-dependent DNA helicase [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 549
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 149/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ K + T+ L+ H G++T+V
Sbjct: 357 IAPADCVEVRVNLTDGERLAYATAEAEEKYRFCATTATKRKVTEALVRRHA--GEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLGAPVIKGETSNAQREKLFDAFR-QGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMAEAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTKRKGIY---PHLELFDSRDWGLVVYDE 298
>gi|254414041|ref|ZP_05027809.1| Type III restriction enzyme, res subunit family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196179177|gb|EDX74173.1| Type III restriction enzyme, res subunit family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 604
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 145/249 (58%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIGPK Y+ W EL+ +GF
Sbjct: 315 EVHLLPAPVFR-ITAELQARRRLGLTATLIREDGREGDVFALIGPKRYDVPWRELETQGF 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ P E Y V ++ + NP K Q+LI + K ++
Sbjct: 374 IATACCTEIRIPQDSEQQMHYAVTPRRQQFRVAAENPRKVEVVQHLI--QQAADHKILII 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + LKH A P I G TSQ++R ++ F+ ++ + +S+V + + DLP+A+
Sbjct: 432 GEYLSQLKHLAKVTAFPLIVGSTSQTKREELYSLFRRG-ELKGLVLSRVGNFALDLPDAD 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKK-GAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
VLIQ+S GSR++EAQRLGRILR K G +A FYTLVS T E ++R RQ FL
Sbjct: 491 VLIQVSGKYGSRQEEAQRLGRILRPKNDGRVAR-----FYTLVSLRTCEEDFARHRQLFL 545
Query: 456 INQGYSYKV 464
QGY Y++
Sbjct: 546 TEQGYGYEI 554
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ A V + L+L S SV QW+ + + I ++ E K
Sbjct: 221 AGKTIVGMAAMAAVGEHTLILTTSLTSVRQWRRELLDKTDLPPDAIAEYSGEVKST---A 277
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY ++++ ++ + + WG+++ D+
Sbjct: 278 PVTLSTYQILTYRPNQAADFPH-FSLFNARSWGLIIYDE 315
>gi|88855709|ref|ZP_01130372.1| DNA repair helicase [marine actinobacterium PHSC20C1]
gi|88815033|gb|EAR24892.1| DNA repair helicase [marine actinobacterium PHSC20C1]
Length = 548
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 149/250 (59%), Gaps = 10/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +GF
Sbjct: 302 EVHLLPAPVFK-LTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGF 360
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
I+ C EV + PE R EY +R L P K + L+ H G++ +V
Sbjct: 361 ISPASCFEVRVDL-PENQRLEYAASADDERFRLAATAPAKTEVVKALVEKHA--GERILV 417
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ + A +++ P + G + +ER ++ Q F+ + VSKVA+ S DLPEA
Sbjct: 418 IGQYLDQIDDLAEQLDAPKLTGASPVAERERLYQEFR-EGITKVLVVSKVANFSVDLPEA 476
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V IQ+S GSR++EAQRLGR+LR K+ + A FYTLV++DT++ +++ RQRFL
Sbjct: 477 TVAIQVSGSFGSRQEEAQRLGRLLRPKESGLP----ANFYTLVARDTVDQDFAQNRQRFL 532
Query: 456 INQGYSYKVI 465
QGYSY ++
Sbjct: 533 AEQGYSYTIL 542
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG 96
AGK+LVG+ A + L+L + VS QW+ + +T + + ++ + K+
Sbjct: 209 GAGKTLVGLGAMAQSKTTTLILVTNTVSARQWRAEILKRTTLTEEEVGEYSGQVKEI--- 265
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++ T KR E + L +WG+++ D+
Sbjct: 266 LPVTIATYQIL--TAKRKGEYAH-LALLDALDWGLVIYDE 302
>gi|329946580|ref|ZP_08294045.1| helicase protein [Actinomyces sp. oral taxon 170 str. F0386]
gi|328527084|gb|EGF54093.1| helicase protein [Actinomyces sp. oral taxon 170 str. F0386]
Length = 560
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 315 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L +P K L+A HE G+ +V
Sbjct: 374 IAPAICTEVRLTLDAGERMAYATAEPEERYRLAASSPRKLPIIDALLARHE--GESALVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L A + P I G T+ ER ++ F+ + + T+ VSKVA+ S DLP A+
Sbjct: 432 GQYVDQLTEIAEHLGAPVITGSTTVHERQRLYDAFR-SGDIRTLVVSKVANFSIDLPGAS 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRI+R K+ + A FYT+V++DT + Y+ RQRFL
Sbjct: 491 VAVQVSGSFGSRQEEAQRLGRIVRPKE----DGRQAHFYTVVARDTADQEYAAHRQRFLA 546
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 547 EQGYAYAII 555
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + ++T + I ++ K+ +P
Sbjct: 223 AGKTLVGAASMARSSTTTLILVTNAVSARQWKEELMRFTTLTEDEIGEYSGSRKEVRP-- 280
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ +K + + L + +WG+++ D+
Sbjct: 281 --ITIATYQVLTTRRKGVY---PHLDLLDSHDWGLIVYDE 315
>gi|320531739|ref|ZP_08032671.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320136044|gb|EFW28060.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 560
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 315 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L +P K L+A HE G+ +V
Sbjct: 374 IAPAICTEVRLTLDAGERMAYATAEPEERYRLAASSPRKLPIIDALLARHE--GESALVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L A + P I G T+ ER ++ F+ + + T+ VSKVA+ S DLP A+
Sbjct: 432 GQYVDQLTEIAEHLGAPVITGSTTVRERQRLYDAFR-SGDIRTLVVSKVANFSIDLPGAS 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRI+R K+ + A FYT+V++DT + Y+ RQRFL
Sbjct: 491 VAVQVSGSFGSRQEEAQRLGRIVRPKE----DGRQAHFYTVVARDTADQEYAAHRQRFLA 546
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 547 EQGYAYAII 555
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + ++T + I ++ K+ +P
Sbjct: 223 AGKTLVGAASMAKSSTTTLILVTNTVSARQWKEELMRFTTLTEEEIGEYSGSRKEVRP-- 280
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L + +WG+++ D+
Sbjct: 281 --VTIATYQVLTTRRKGVY---PHLDLLDSHDWGLIVYDE 315
>gi|220911680|ref|YP_002486989.1| helicase [Arthrobacter chlorophenolicus A6]
gi|219858558|gb|ACL38900.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
Length = 548
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 149/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIESQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + + + L + +K + L+A H G++ +V
Sbjct: 358 IAPADCVEVRVDLPKDERVAYAMADDADKYRLCSTSESKSVVVEQLVARHA--GEQLLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G TS R ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDDLGERLQAPVIKGDTSVKVRQRLFDAFRAG-EIQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR KK A A FY+LV++DT++ ++ KRQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPKKDGRA----ARFYSLVARDTLDQEFAAKRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIM 539
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A T L+L + V+ QWK + ++ + I ++ K+ +P
Sbjct: 206 GAGKTLVGAAAMATGSTTTLILVTNTVAARQWKDELLKRTSLTEEEIGEYSGALKEVRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++ T KR ++ + +WG+++ D+
Sbjct: 265 ---VTIATYQVL--TTKRGGLYPH-LELVDGHDWGLIIYDE 299
>gi|427422083|ref|ZP_18912266.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425757960|gb|EKU98814.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 557
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR T+ Q+ +LGLTATL+RED D+ LIGPK Y+ W +L+ +GF
Sbjct: 314 EVHLLPAPVFRITATL-QARRRLGLTATLIREDGHEGDVFALIGPKRYDVPWRDLETQGF 372
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ ++ +Y + ++ + NP K + L+ + G + ++
Sbjct: 373 IATAHCTEIRIAQPDDWQMDYAMAPRRQQFRIAAENPRKLEVVKTLL--EKEAGHRILII 430
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + LK A ++ P I G TSQ++R +I F+ V+ + +S+V + + DLP+A+
Sbjct: 431 GEYISQLKSIAALVDFPLITGKTSQADREKIYGAFR-QGDVSGLVLSRVGNFALDLPDAD 489
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQ+S GSR++EAQRLGRILR K+ NA FYTLVS T E +++ RQ FL
Sbjct: 490 VLIQVSGKYGSRQEEAQRLGRILRPKQTG----NNAQFYTLVSSRTCEEDFAQHRQLFLT 545
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 546 EQGYRYQI 553
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ +++ L+L ++ SV QW+ + ++ + I ++ D+
Sbjct: 220 AGKTMVGMATMAAIQQHTLILTSNLTSVRQWRRELLDKTSLTEDHIAEYSG---DRKATG 276
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++++ + E + + Q+WG+++ D+
Sbjct: 277 PVTLATYQILTYRAHKD-EEFRHLGLFDQQDWGLIIYDE 314
>gi|296128585|ref|YP_003635835.1| helicase domain-containing protein [Cellulomonas flavigena DSM
20109]
gi|296020400|gb|ADG73636.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
Length = 548
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK ++A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRFDAPWKDIESQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV + Y + ++ L K R + L+A H G++T+V
Sbjct: 358 IAPAECVEVRLTLPDHERMTYATAEPEEKYRLAATAAGKNRVVESLVAKHA--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A + I G T+ ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GQYLDQLHELAEHLGAELITGETTVRERQRLFDAFRTG-EITTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K A+ A FYT+V++DT++ ++ RQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRIMRPK----ADGKTAHFYTVVARDTVDQDFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
>gi|383830141|ref|ZP_09985230.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383462794|gb|EID54884.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 548
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y ++ +R L K ++ H G+ T+V
Sbjct: 358 IAPAECVEVRVTLTDAERLGYATAESEERYRLASTARTKIGVISSIVEKHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++N P + G T ER + F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGAELNAPVVQGSTKNREREALFDAFRRG-EIDKLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVARDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMARAQATTLILVTNTVAGRQWKRELVERTSLTEDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVVTRRTKGEY---RHLELFDSRDWGLVIYDE 299
>gi|333918492|ref|YP_004492073.1| DNA repair helicase [Amycolicicoccus subflavus DQS3-9A1]
gi|333480713|gb|AEF39273.1| DNA repair helicase [Amycolicicoccus subflavus DQS3-9A1]
Length = 555
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 300 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFALIGPKRYDAPWKDIEAQGW 358
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y V + +R L K + ++ H T+V
Sbjct: 359 IAPADCIEVRVTLTEAERMAYAVAEPEERYRLCSTAHTKVAVVKAILDKHP--DAPTLVI 416
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 417 GAYIDQLEELGAELDAPVIQGSTRNKEREALYDAFRRG-EIQTLVVSKVANFSIDLPEAS 475
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR KK + + A FY++VS+DT++ Y+ RQRFL
Sbjct: 476 VAVQVSGTFGSRQEEAQRLGRLLRPKK----DGHQAHFYSVVSRDTLDTEYAAHRQRFLA 531
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 532 EQGYAYRIV 540
>gi|302530595|ref|ZP_07282937.1| DNA helicase [Streptomyces sp. AA4]
gi|302439490|gb|EFL11306.1| DNA helicase [Streptomyces sp. AA4]
Length = 548
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ +Y + +R L K + ++ H G+ T+V
Sbjct: 358 IAPAECTEVRVTLTENERLQYATADSDERYKLAATAMTKIPVIRSIVDKHP--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEMLGAELEAPVIQGATKNKEREELFDKFRRG-ELRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSIVSRDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYHIV 539
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAHAKATTLILVTNTVAGRQWKRELVARTSLTEDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVVTRKTKGEY---RHLELFDSRDWGLVVYDE 299
>gi|76154187|gb|AAX25682.2| SJCHGC05686 protein [Schistosoma japonicum]
Length = 124
Score = 171 bits (433), Expect = 8e-40, Method: Composition-based stats.
Identities = 74/82 (90%), Positives = 81/82 (98%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
+VHTIPAKMFRRVLT+VQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANWLELQ+RGF
Sbjct: 25 QVHTIPAKMFRRVLTLVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWLELQQRGF 84
Query: 277 IARVQCAEVWCPMSPEFYREYL 298
IARVQCAEVWCP++PEFYREYL
Sbjct: 85 IARVQCAEVWCPVTPEFYREYL 106
>gi|433650069|ref|YP_007295071.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
gi|433299846|gb|AGB25666.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
Length = 549
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 147/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y V + +R L K + ++ H+ G++T+V
Sbjct: 358 IAPAECIEVRVTMTDNERMLYAVAEPDERYKLCSTVHTKIAVVKSILDKHQ--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T +ER + F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGQELNAPVIQGSTKTAEREALFDAFR-RGEISTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGGAMFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYVI 538
>gi|365826774|ref|ZP_09368669.1| hypothetical protein HMPREF0975_00452 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265743|gb|EHM95485.1| hypothetical protein HMPREF0975_00452 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 651
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 406 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 464
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L +P K L+A HE G+ +V
Sbjct: 465 IAPAICTEVRLTLDAGERMAYATAEPEERYRLAACSPRKMPIIDALLARHE--GESALVI 522
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L A ++ P I G T+ ER ++ F+ + ++ T+ VSKVA+ S DLP A+
Sbjct: 523 GQYVDQLTEIAEHLDAPVITGSTTVRERQRLYDAFR-SGEIRTLVVSKVANFSIDLPGAS 581
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRI+R K+ + A FYT+V++DT + Y+ RQRFL
Sbjct: 582 VAVQVSGSFGSRQEEAQRLGRIVRPKE----DGRQAHFYTVVARDTADQEYAAHRQRFLA 637
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 638 EQGYAYAII 646
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + ++T + I ++ K+ +P
Sbjct: 314 AGKTLVGAASMARSSTTTLILVTNAVSARQWKEELIRFTTLTEDEIGEYSGSRKEVRP-- 371
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L + +WG+++ D+
Sbjct: 372 --VTIATYQVLTTRRKGVY---PHLDLLDSHDWGLIVYDE 406
>gi|403721263|ref|ZP_10944374.1| putative ATP-dependent DNA helicase [Gordonia rhizosphera NBRC
16068]
gi|403207305|dbj|GAB88705.1| putative ATP-dependent DNA helicase [Gordonia rhizosphera NBRC
16068]
Length = 557
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + ++ L K + ++ H + +T++
Sbjct: 361 IAPAECIEVRVTLTDEERLQYAVAENDEKYRLCSTAHTKVNVVRSILDRH--KDSQTLII 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +R + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 419 GAYIDQLEELGRELDAPVIQGSTKNKDREALFDRFR-SGELQTLVVSKVANFSIDLPEAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K+ + A FY++VS+DT++ Y+ RQRFL
Sbjct: 478 VAVQVSGTFGSRQEEAQRLGRLLRPKR----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 533
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 534 EQGYAYRI 541
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 210 AGKTMVGAAAMAKAQATTLILVTNTVAGRQWKRELVARTSLTEDEIGEYSGERKEIRP-- 267
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + + +++WG+++ D+
Sbjct: 268 --VTIATYQVMTRKSKGEY---RNLDLFDSRDWGLIIYDE 302
>gi|262201196|ref|YP_003272404.1| helicase [Gordonia bronchialis DSM 43247]
gi|262084543|gb|ACY20511.1| helicase domain protein [Gordonia bronchialis DSM 43247]
Length = 555
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ +Y V + ++ L K + ++A H +T+V
Sbjct: 358 IAPAECIEVRVTLTDNERLQYAVAEPEEKYKLCSTAHTKVNVVKSILARHS--DSQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|229819343|ref|YP_002880869.1| type III restriction protein res subunit [Beutenbergia cavernae DSM
12333]
gi|229565256|gb|ACQ79107.1| type III restriction protein res subunit [Beutenbergia cavernae DSM
12333]
Length = 548
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + Y + R L K R + L+ H+ G++T+V
Sbjct: 358 IAPADCVEIRLTLPDSARMAYATAEPEDRYRLAATAAGKSRVVRELLRKHD--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T+ ER ++ F+ + V T+ VSKVA+ S DLPEA
Sbjct: 416 GQYLDQLEELGEQIGAPVITGATTVPERQRLFDAFR-SGDVTTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY +V++DT++ ++ RQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPK----GDGRTAHFYAVVARDTVDQDFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 531 EQGYAYRII 539
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QW+ + ++ + I ++ K+ +P
Sbjct: 206 GAGKTLVGAAAMAQSQTTTLILVTNTVSARQWRDELLRRTSLTEDEIGEYSGSRKEVRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ L ++WG+++ D+
Sbjct: 265 ---VTIATYQVLTTRRKGVY---THLELLDARDWGLVVYDE 299
>gi|406575906|ref|ZP_11051590.1| helicase [Janibacter hoylei PVAS-1]
gi|404554681|gb|EKA60199.1| helicase [Janibacter hoylei PVAS-1]
Length = 545
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 149/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + AD+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREADVFSLIGPKRYDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + R L +P K + L+ H RG+ T++
Sbjct: 358 IAPADCVEVRVTLTDAERMAYATAEADDRYRLASCSPVKLGVVRELVERH--RGEPTLII 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + +++ I G T +R ++ +F+ + + + VSKVA+ S DLPEA+
Sbjct: 416 GQYLDQLHELSEQLDADLITGETPVKQRQELFADFR-EGRSSLLVVSKVANFSVDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K+ + A FYT+V++DT++ ++ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPKE----DGRTAHFYTVVTRDTVDAEFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIL 539
>gi|258654903|ref|YP_003204059.1| helicase domain-containing protein [Nakamurella multipartita DSM
44233]
gi|258558128|gb|ACV81070.1| helicase domain protein [Nakamurella multipartita DSM 44233]
Length = 554
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIESQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + K + ++ H G+ T+V
Sbjct: 358 IAPAECTEVRVTLTDHERLTYATAEPEERYKIASTARTKLPVVRTVLDRHP--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T +ER ++ F+ ++ T+ VSKVA+ S DLP+A
Sbjct: 416 GAYLDQLEELGEELQAPIIQGSTRNAERERLFDAFRAG-EIKTLVVSKVANFSIDLPDAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSIVSRDTLDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|145222289|ref|YP_001132967.1| type III restriction enzyme, res subunit [Mycobacterium gilvum
PYR-GCK]
gi|145214775|gb|ABP44179.1| type III restriction enzyme, res subunit [Mycobacterium gilvum
PYR-GCK]
Length = 549
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H + T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMLYATAEPEERYKLCATAHTKIAVVKSILDRHP--NEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T +ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGTELNAPVIQGSTKNAEREELFDGFRRG-EIRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYVI 538
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + +T + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMARAGATTLILVTNTVAGRQWKRELIARTTLTEEEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLIVYDE 299
>gi|330465290|ref|YP_004403033.1| helicase domain-containing protein [Verrucosispora maris AB-18-032]
gi|328808261|gb|AEB42433.1| helicase domain-containing protein [Verrucosispora maris AB-18-032]
Length = 559
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 305 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIESQGW 363
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA QC EV ++ Y + +R + K + L+ H ++T+V
Sbjct: 364 IAPAQCTEVRVTLTDAERMAYATAEAEERYRMAATARTKLPVVKALVDRHPE--EQTLVI 421
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ + + T+ +SKV + S DLPEA
Sbjct: 422 GAYIDQLHQLGEYLDAPIVQGSTTNKERERLFDAFR-DGSLRTLVISKVGNFSIDLPEAA 480
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 481 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTIDTEYAAHRQRFLA 536
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 537 EQGYAYTIV 545
>gi|294629996|ref|ZP_06708556.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
gi|292833329|gb|EFF91678.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
Length = 548
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 150/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y +T ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDAERLAYATAETEEKYRFCATTATKRKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L +N P I G TS ++R ++ F+ ++N + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFR-EGEINVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V +Q+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAVQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIM 538
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|315442723|ref|YP_004075602.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261026|gb|ADT97767.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 549
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H + T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMLYATAEPEERYKLCATAHTKIAVVKSILDRHP--DEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T +ER ++ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGTELNAPVIQGSTKNAEREELFDGFRRG-EIRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYVI 538
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + +T + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMARAGATTLILVTNTVAGRQWKRELIARTTLTEEEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLIVYDE 299
>gi|324998370|ref|ZP_08119482.1| DNA/RNA helicase, superfamily II [Pseudonocardia sp. P1]
Length = 553
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK ++A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y +R K Q ++ H +G++T+V
Sbjct: 358 IAPAECVEVRVTLTDAERMAYATADAEERYRTASTAHTKLNVVQAVLDRH--KGEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ K++ P I G T ER ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 416 GAYLEQLEALGEKLDAPVIQGSTRNKERERLFDLFRRG-ELDRLVVSKVANFSIDLPEAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 IAVQVSGTFGSRQEEAQRLGRLLRPK----ADGRQAHFYSVVSRDTVDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|320103370|ref|YP_004178961.1| type III restriction protein res subunit [Isosphaera pallida ATCC
43644]
gi|319750652|gb|ADV62412.1| type III restriction protein res subunit [Isosphaera pallida ATCC
43644]
Length = 568
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 149/249 (59%), Gaps = 6/249 (2%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIGPK ++ W L+++G+
Sbjct: 315 EVHLLPAPVFR-ITADIQARRRLGLTATLVREDGREEDVFSLIGPKKFDVPWRVLEQKGW 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ +C E+ + + EY + + + + NP K L+ + D+ ++
Sbjct: 374 IAQARCHEIRLSLPDDQKMEYALAELRDKFRIASENPAKEEIVAQLLEHFNEPDDRVLII 433
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G TS +ER ++ Q + N ++ + +SKV + + DLP+AN
Sbjct: 434 GQYLKQLRRIAQRFGLPLITGQTSNAERERLYQRLR-NGELKRLVLSKVGNFAIDLPDAN 492
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V+IQ+S GSR++EAQRLGRILR K +A F++LV++DT E+ ++ RQ FL
Sbjct: 493 VMIQVSGTFGSRQEEAQRLGRILRPKMNT----DSAHFFSLVTRDTRELDFAHHRQLFLT 548
Query: 457 NQGYSYKVI 465
QGYSY+++
Sbjct: 549 EQGYSYEIL 557
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG 96
AGK++VG+ A V+K L+L S SVEQW+ + + D+S++ +T EAK+K +
Sbjct: 218 GAGKTIVGLAAMAAVQKHTLILTTSTTSVEQWRRELLDKTDLDESLLGLYTGEAKEKSIK 277
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++++ KR E Q+ +WG+++ D+
Sbjct: 278 P-VTLATYQIVTYRPKRG-EDFPHFHLFQSMDWGLIIYDE 315
>gi|357021039|ref|ZP_09083270.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
thermoresistibile ATCC 19527]
gi|356478787|gb|EHI11924.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
thermoresistibile ATCC 19527]
Length = 549
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H+ G++T+V
Sbjct: 358 IAPAECIEVRVTMTDNERMLYATAEPEERYKLCSTAHTKVAVVKSILERHQ--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER + F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLEQLEELGRELDAPVIQGSTKTAEREALFDAFRRG-EISTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ ++ I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAEATTLILVTNTVAGRQWKRELIARTSLTENEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ +RS + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVIT---RRSKGVYKHLELFDSRDWGLIIYDE 299
>gi|108801448|ref|YP_641645.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS]
gi|119870601|ref|YP_940553.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS]
gi|126437433|ref|YP_001073124.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
gi|108771867|gb|ABG10589.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS]
gi|119696690|gb|ABL93763.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS]
gi|126237233|gb|ABO00634.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
Length = 549
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y V + +R L K + ++ H +G++T+V
Sbjct: 358 IAPAECIEVRVTMTDNERMLYAVAEPEERYKLCSTVHTKIAVVRSILERH--KGEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER + F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGQELDAPVIQGSTKNAERELLFDQFR-RGEISTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYVI 538
>gi|453379441|dbj|GAC85763.1| putative ATP-dependent DNA helicase [Gordonia paraffinivorans NBRC
108238]
Length = 561
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 150/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + ++ L K + ++ H+ + +T+V
Sbjct: 358 IAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILDKHQHQ--QTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYIDQLEELGRELDCPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 531 EQGYAYRI 538
>gi|428317195|ref|YP_007115077.1| type III restriction protein res subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428240875|gb|AFZ06661.1| type III restriction protein res subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 561
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED K D+ LIGPK Y+ W EL+ +GF
Sbjct: 316 EVHLLPAPIFR-ITAELQARRRLGLTATLIREDGKEGDVFTLIGPKRYDVPWRELEGQGF 374
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + EY + + + NP K Q L+ + G + ++
Sbjct: 375 IATANCTEIRVAQNEAEKMEYALAPRRNQFRIAAENPAKLDVVQSLL--QKEAGHRILII 432
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + L A P I G T Q++R ++ + F+ + ++ + +S+V + + DLP+A+
Sbjct: 433 GEYLEQLDAIAKMTELPLITGKTKQADRDRLYEAFR-HKEIPGLILSRVGNFAVDLPDAD 491
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQ+S GSR++EAQRLGRILR K ++ +NA FYTLVS T E ++R RQ FL
Sbjct: 492 VLIQVSGKYGSRQEEAQRLGRILRPK----SDGHNASFYTLVSLQTCEEDFARHRQLFLT 547
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 548 EQGYNYRI 555
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ A V+++ L+L +S SV QW+ + ++ + I ++S K
Sbjct: 222 AGKTIVGMLAMSLVKQKTLILTSSLTSVHQWRREILDKTSLTEDAIAEYSSVTKQT---A 278
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY M+S+ + E + + WG+++ D+
Sbjct: 279 AVTLSTYQMLSYRSNKDDEFPH-FELFNAESWGLIIYDE 316
>gi|378550700|ref|ZP_09825916.1| hypothetical protein CCH26_11456 [Citricoccus sp. CH26A]
Length = 570
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 155/249 (62%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + +++ LIGPK Y+A W +++ +G+
Sbjct: 322 EVHLLPAPIFR-LTADLQARRRLGLTATLVREDGRESEVFSLIGPKRYDAPWKDIEAQGY 380
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV + + Y + + + R L + K + ++ H G++ +V
Sbjct: 381 IAPAECIEVRVELPRDERVAYAMAEDADRYRLCSTSEVKLPVVRSIVERHP--GEQVLVI 438
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P + G TS +ER ++ F+ + ++ + VSKVA+ S DLPEA+
Sbjct: 439 GQYLDQLQELGELLDAPVLTGSTSVAERQRLFGAFR-DGEIGVLVVSKVANFSIDLPEAS 497
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K+ + +A FYT+VS+DT++ Y++KRQRFL
Sbjct: 498 VAVQVSGAYGSRQEEAQRLGRLLRPKE----DGKSAHFYTVVSRDTLDQDYAQKRQRFLA 553
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 554 EQGYAYTIL 562
>gi|84498512|ref|ZP_00997282.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
gi|84381255|gb|EAP97139.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
Length = 545
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED +D+ LIGPK ++A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGLESDVFSLIGPKRFDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y V + R L + K + L+ H RG+ T+V
Sbjct: 358 IAPADCVEVRVTLPDGQRMAYAVAEAEDRYRLASCSDAKLPVVEKLVEKH--RGEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + ++ I G TS +ER ++ F+ + ++ + VSKVA+ S DLPEA+
Sbjct: 416 GQYLDQLDELSTRLGAEVITGETSVTERQRLYSAFR-DGDISLLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FYT+V++DT++ ++ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPK----GDGRTAHFYTVVARDTVDADFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 207 AGKTLVGAGAMAKASATTLILVTNTVSARQWKDELLRRTSLTEDEIGEYSGARKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L ++WG+++ D+
Sbjct: 265 --VTIATYQVLTTRRKGVY---THLDLLDAKDWGLVVYDE 299
>gi|441161070|ref|ZP_20967874.1| ATP-dependent DNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440616801|gb|ELQ79926.1| ATP-dependent DNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 547
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 150/249 (60%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ +K T+ L+ H +G++T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEPEEKYRYCATTASKQSVTEALVRRH--KGEQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G T+ ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLGAPVIKGETTNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHEARFYSVVARDTVDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + + ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMARAKATTLILVTNTVSARQWKHELVKRTSLTEDEVGEYSGTKKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|297193652|ref|ZP_06911050.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|297151855|gb|EDY65705.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 551
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ K R T+ L+ H G +T+V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCATTATKRRVTEQLVRKHA--GQQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETPNTQREKLFDAFRPG-EISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 IAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHKAHFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIM 538
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMARAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 264 ---VTIATYQVLTTKRKGIYPH---LELFDSRDWGLILYDE 298
>gi|421858960|ref|ZP_16291209.1| DNA or RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410831479|dbj|GAC41646.1| DNA or RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 561
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK +E W +L++ G+
Sbjct: 303 EVHLLPAPVFRMTADL-QATRRLGLTATLVREDGCERDVFSLIGPKRFELPWRQLEEAGW 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IARV C EV P+ Y +R + N K A + LIA H G T++
Sbjct: 362 IARVTCTEVRVPLPGATRIAYQQSGLRERARIAAENGAKIPAVRQLIARHP--GAPTLII 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +A + P + G T Q+ER + + FK + + VSKVA+ + DLP+A
Sbjct: 420 GQYLSQLDAFAAALQAPVLTGQTPQAERQLLYEAFKRG-DLPVLIVSKVANFAVDLPDAT 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR KK + A+FYT+VS+ T E Y+ KRQ FL+
Sbjct: 479 VAIQVSGSYGSRQEEAQRLGRLLRPKK----DGRMAYFYTVVSEATKERDYALKRQLFLV 534
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 535 EQGYRYLI 542
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+++G+ A ++ L+L ++ SV+QWK + +T + +T K +P
Sbjct: 208 GAGKTIIGLAAMTALQSETLILTSNATSVKQWKEELLKRTTLKSEQVGEYTGADKQVRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY M+++ Q++ E M+ ++WG+++ D+
Sbjct: 267 ---VTISTYQMMTYRQQKEGECSH-MRLFHERDWGLIIYDE 303
>gi|348173118|ref|ZP_08880012.1| ATP-dependent DNA helicase [Saccharopolyspora spinosa NRRL 18395]
Length = 553
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ EY + +R + K + ++ H G+ +V
Sbjct: 358 IAPAECIEVRVTLTDNERLEYATAEADERYKMCSTARTKAPVVKAILDRHP--GEPALVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T ER ++ F+ ++N + VSKVA+ S DLPEA+
Sbjct: 416 GAYLEQLHELGEALDAPIVEGSTKNKEREELFDAFRRG-EINRLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----AKRKQAHFYSVVSRDTLDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ D I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAEAQATTLILVTNTVAGRQWKRELIERTSLTDDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRSKGEY---RHLELFDSRDWGLVVYDE 299
>gi|159039860|ref|YP_001539113.1| helicase domain-containing protein [Salinispora arenicola CNS-205]
gi|157918695|gb|ABW00123.1| helicase domain protein [Salinispora arenicola CNS-205]
Length = 559
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++++G+
Sbjct: 305 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEQQGW 363
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + K + L+ H G++T+V
Sbjct: 364 IAPAECTEVRVTLTDAERMAYATAEADERYRMAATTRTKLPVVKALLDRHP--GEQTLVI 421
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ + ++ T+ +SKV + S DLPEA
Sbjct: 422 GGYIDQLHQLGEYLDAPIVQGSTTNRERERLFDAFR-SGELQTLVISKVGNFSIDLPEAA 480
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FYT+VS+DT++ Y+ RQRFL
Sbjct: 481 VAVQVSGTFGSRQEEAQRLGRVLRPK----IDGRQAHFYTVVSRDTIDTEYAAHRQRFLA 536
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 537 EQGYAYTIV 545
>gi|156319528|ref|XP_001618128.1| hypothetical protein NEMVEDRAFT_v1g155676 [Nematostella vectensis]
gi|156197552|gb|EDO26028.1| predicted protein [Nematostella vectensis]
Length = 109
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 82/91 (90%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
I EVHTIPAK FRRVLT+VQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 12 IAEVHTIPAKQFRRVLTVVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWMELQNS 71
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKR 305
GFIARVQCAEVWCPM+PEFY EYL KT KR
Sbjct: 72 GFIARVQCAEVWCPMTPEFYSEYLNIKTRKR 102
>gi|315646161|ref|ZP_07899281.1| type III restriction protein res subunit [Paenibacillus vortex
V453]
gi|315278360|gb|EFU41676.1| type III restriction protein res subunit [Paenibacillus vortex
V453]
Length = 576
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 146/246 (59%), Gaps = 8/246 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED + D+ LIGPK YE W L+++G+
Sbjct: 328 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGREHDVFSLIGPKRYEMPWKRLEEQGW 386
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA V C E+ PM E ++ L NP+K + L+ H +G + +V
Sbjct: 387 IASVDCVEMKVPMPEELKEACGAAGKREQYRLAAENPSKLLVVKQLVDLH--KGAQILVI 444
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A +++ P I G +Q +R + + F+ V + VSKVA+ + DLP+A+
Sbjct: 445 GQYLDQLNTIARQLDAPLITGQMAQDQRNEWYKAFR-EGAVRVLVVSKVANFAVDLPDAS 503
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V I++S GSR++EAQRLGR+LR K+G E A+FY +VS+D+ E ++ +RQ FLI
Sbjct: 504 VAIEVSGSYGSRQEEAQRLGRLLRPKQG----ENRAYFYAVVSEDSREEMFAIRRQLFLI 559
Query: 457 NQGYSY 462
QGY+Y
Sbjct: 560 EQGYAY 565
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF--KLWSTADDSMICRFTSEAKD-KP 94
AGK+++G+ A ++ L+L ++ SV QW + K + DD I ++ + KD +P
Sbjct: 234 AGKTVIGMAAMRELQCETLILTSNTTSVRQWITELLHKTSLSVDD--IGEYSGQRKDVRP 291
Query: 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +++H Q + E M+ + WG+++ D+
Sbjct: 292 ----VTVATYQILTHRQGKDDEQPH-MKLFNERRWGLIIYDE 328
>gi|386840890|ref|YP_006245948.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101191|gb|AEY90075.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451794184|gb|AGF64233.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 550
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 150/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 301 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y +T ++ K + T+ ++ RR G + +
Sbjct: 360 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTETKRKVTEAIV----RRFAGQQIL 415
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L +N P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 416 VIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPE 474
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 475 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 530
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 531 LAEQGYAYRIV 541
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 209 AGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 267 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 301
>gi|120406004|ref|YP_955833.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii
PYR-1]
gi|119958822|gb|ABM15827.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii
PYR-1]
Length = 549
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H + T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMMYATAEPDERYKLCATAHTKIAVVKSILERHP--DEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T +ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGTELNAPVIQGSTKNAEREALFDAFRRG-EIRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYVI 538
>gi|417780597|ref|ZP_12428358.1| type III restriction enzyme, res subunit [Leptospira weilii str.
2006001853]
gi|410779306|gb|EKR63923.1| type III restriction enzyme, res subunit [Leptospira weilii str.
2006001853]
gi|456865570|gb|EMF83904.1| type III restriction enzyme, res subunit [Leptospira weilii serovar
Topaz str. LT2116]
Length = 569
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVSMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + +F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|357590863|ref|ZP_09129529.1| hypothetical protein CnurS_11732 [Corynebacterium nuruki S6-4]
Length = 548
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 303 EVHLLPAPVFR-MTSDLQSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKDIEAQGW 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +++ L +P K Q ++ H D T+V
Sbjct: 362 IAPADCTEVRVQLGENERMIYATAEQNEKYRLAACSPKKTAVVQKILDQHP--DDPTLVI 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T+ R ++ F+ ++ + VSKVA+ S DLP A+
Sbjct: 420 GAYIDQLEELGEELDAPVIDGKTTTHRREELYDAFRAG-ELRVLIVSKVANFSIDLPGAS 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K + AFFY++V++DT++ Y+ RQRFL
Sbjct: 479 VAVQVSGTFGSRQEEAQRLGRILRPKP----DGGPAFFYSVVARDTLDADYAAHRQRFLA 534
Query: 457 NQGYSYKVI 465
QGY Y++I
Sbjct: 535 EQGYGYRII 543
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QW+ + +T + I ++ E K+ +P
Sbjct: 211 AGKTMVGAAAMAKSKTTTLILVTNTVAGRQWRDELIRRTTLTEDEIGEYSGEKKEIRP-- 268
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 269 --VTIATYQVVTRKTKGEFRA---LELFDSRDWGLIIYDE 303
>gi|443288418|ref|ZP_21027512.1| Putative DNA repair helicase [Micromonospora lupini str. Lupac 08]
gi|385888559|emb|CCH15586.1| Putative DNA repair helicase [Micromonospora lupini str. Lupac 08]
Length = 559
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 143/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 305 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIESQGW 363
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + K + L+ H D+ +V
Sbjct: 364 IAPAECVEVRVTLTDAERMSYATAEAEERYRMAATARTKLPVVKALVDRHP--DDQVLVI 421
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ ++ T+ +SKV + S DLPEA
Sbjct: 422 GAYIDQLHQIGEYLDAPIVQGSTTNKERERLFDAFRTG-EIRTLVISKVGNFSIDLPEAA 480
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 481 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTIDTEYAAHRQRFLA 536
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 537 EQGYAYTIV 545
>gi|375102737|ref|ZP_09749000.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374663469|gb|EHR63347.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 548
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y ++ +R L K ++ H G+ T+V
Sbjct: 358 IAPAECVEVRVTLTDAERLAYATAESEERYRLASTAHTKTGVISSIVEKHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++N P + G T ER + F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGAELNAPVVQGSTRNKEREALFDAFRRG-EIDRLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVARDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMARAEATTLILVTNTVAGRQWKRELVERTSLTEDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---RHLELFDSRDWGLVIYDE 299
>gi|398332789|ref|ZP_10517494.1| superfamily II DNA/RNA helicase [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 569
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVSMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + +F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|168701354|ref|ZP_02733631.1| DNA repair helicase [Gemmata obscuriglobus UQM 2246]
Length = 600
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 145/251 (57%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED + D+ LIGPK Y+ W EL+ +G+
Sbjct: 345 EVHLLPAPVFR-VTAQIQARRRLGLTATLIREDGREGDVFSLIGPKKYDVPWRELETKGW 403
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIA-YHERRGDKTI 334
IA C+E+ + + R EY V + + N K L+ YH++R I
Sbjct: 404 IASASCSEIRVALPTDSTRMEYAVADHRAKYRIASENVAKDEVVAELLKRYHDQR---VI 460
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + LK + + P I G T +ER + F+ V + +SKV + + DLP+
Sbjct: 461 VIGQYLSQLKRLSERFEIPMITGSTGNAEREDLYGKFRRG-DVRHLVLSKVGNFAIDLPD 519
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQ+S GSR++EAQRLGRILR K E A F+TLV++DT E+ ++ RQ F
Sbjct: 520 ANVLIQVSGTFGSRQEEAQRLGRILRPKSSGDGE---AHFFTLVTRDTRELDFAHHRQMF 576
Query: 455 LINQGYSYKVI 465
L QGYSY+++
Sbjct: 577 LTEQGYSYEIL 587
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ + C ++K LVL S +V+QW+ + +T + + +T E KD +G
Sbjct: 251 AGKTVVGIASMCLLQKNTLVLTTSITAVKQWRREIIDKTTLTEDEVKEYTGETKD--IGP 308
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +I++ ++ EA + ++WG+++ D+
Sbjct: 309 -VTVATYQIITYRPDKT-EAFPHFGLFEQRDWGLIVYDE 345
>gi|42528221|ref|NP_973319.1| helicase [Treponema denticola ATCC 35405]
gi|449110813|ref|ZP_21747413.1| hypothetical protein HMPREF9735_00462 [Treponema denticola ATCC
33521]
gi|449114373|ref|ZP_21750851.1| hypothetical protein HMPREF9721_01369 [Treponema denticola ATCC
35404]
gi|41819491|gb|AAS13238.1| helicase domain protein [Treponema denticola ATCC 35405]
gi|448956525|gb|EMB37285.1| hypothetical protein HMPREF9721_01369 [Treponema denticola ATCC
35404]
gi|448960187|gb|EMB40904.1| hypothetical protein HMPREF9735_00462 [Treponema denticola ATCC
33521]
Length = 590
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 345 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 403
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H + ++ ++
Sbjct: 404 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKH--KENQILII 461
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 462 GQYLSQLEAIAKEINAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 520
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 521 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 574
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 575 EQGYDYSILTE 585
>gi|375097404|ref|ZP_09743669.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374658137|gb|EHR52970.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 548
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK ++ W +++++G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDVPWRDIEQQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y ++ +R L K + ++ H G+ T+V
Sbjct: 358 IAPAECVEVRVTLTDGERLGYATAESEERYRLASTARTKVAVIKSIVERHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T +ER + F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGAELEAPVIQGSTRNAEREALFDAFRRG-ELDKLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVSRDTVDTDYAAHRQRFLT 530
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 531 EQGYAYRII 539
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAQAQATTLILVTNTVAGRQWKRELVARTSLTEDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVVTRKTKGEY---RHLELFDSRDWGLIIYDE 299
>gi|400537832|ref|ZP_10801354.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
colombiense CECT 3035]
gi|400328876|gb|EJO86387.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
colombiense CECT 3035]
Length = 542
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++A H G++T+V
Sbjct: 351 IAPAECVEVRVTMTDNERMLYATAEPEERYKLCSTVHTKIAVVKSILAKHP--GEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T ER ++ F+ +++T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELNAPVIQGSTRTKEREELFDAFRRG-ELSTLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELIARTSLSEDEIGEYSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|381398295|ref|ZP_09923699.1| type III restriction protein res subunit [Microbacterium
laevaniformans OR221]
gi|380774261|gb|EIC07561.1| type III restriction protein res subunit [Microbacterium
laevaniformans OR221]
Length = 547
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK ++A W E++ +GF
Sbjct: 299 EVHLLPAPVFK-LTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGF 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
I+ C EV + P EY +R L K + L+A H G++ +V
Sbjct: 358 ISPAVCYEVRVDLPPSDRMEYAASADDERYRLAATAHAKIGVVKDLVARHA--GEQILVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + + ++ P I G T ER ++ F+ ++ + VSKVA+ S DLP+A+
Sbjct: 416 GQYLDQIDVLSEALDAPKITGATPVDEREELFAAFR-EARLPVLVVSKVANFSIDLPDAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FYTL+++DT++ +++ RQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRLLRPKSNG----HTASFYTLIARDTVDQDFAQNRQRFLA 530
Query: 457 NQGYSYKVI 465
QGYSY ++
Sbjct: 531 EQGYSYTIL 539
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QW+ + +T I ++ ++K+ KP
Sbjct: 207 AGKTLVGAAAMAETKTTTLILVTNTVSARQWRDELLKRTTLTPEEIGEYSGQSKEVKP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L +WG+++ D+
Sbjct: 265 --VTIATYQILTAKRKGQY---AHLALLDALDWGLIVYDE 299
>gi|359726479|ref|ZP_09265175.1| superfamily II DNA/RNA helicase [Leptospira weilii str. 2006001855]
Length = 557
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 297 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 356 IAEAKCKEIRVSMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + +F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 414 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFR-SGKIKSLVVSKVANFSIDLPDAN 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 473 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 528
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 529 EQGYEYEIYT 538
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 203 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 260
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 261 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 297
>gi|326332145|ref|ZP_08198429.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
Broad-1]
gi|325950116|gb|EGD42172.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
Broad-1]
Length = 549
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + +R + +K + ++A H + T+V
Sbjct: 358 IAPADCVEVRVTLPTDERLVYATAEPDERYRIASCTHHKIDVVKEIVASHADK--PTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A ++ P I G TS ER ++ F+ + +++ + VSKVA+ S DLP A
Sbjct: 416 GQYLEQLDEIAASLDAPVIEGKTSVKERQRLFDAFR-SGEIDLLVVSKVANFSIDLPSAE 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR G A FYT+VS+DT++ +++ RQRFL
Sbjct: 475 VAIQVSGAYGSRQEEAQRLGRLLRPGDG----NKTAHFYTIVSRDTVDADFAQNRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWK + ++ I ++ K+ +P
Sbjct: 207 AGKTLVGAAAMAHAQATTLILVTNTVSARQWKDELVRRTSLTSDEIGEYSGSVKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K ++ ++ L ++WG+++ D+
Sbjct: 265 --VTIATYQVLTARRKGAY---PHLELLDARDWGLIVYDE 299
>gi|422341009|ref|ZP_16421950.1| helicase domain-containing protein [Treponema denticola F0402]
gi|325474580|gb|EGC77766.1| helicase domain-containing protein [Treponema denticola F0402]
Length = 590
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 345 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 403
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H+ ++ ++
Sbjct: 404 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKHKE--NQILII 461
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 462 GQYLSQLETIAKEINAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 520
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 521 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 574
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 575 EQGYDYSILTE 585
>gi|449108300|ref|ZP_21744944.1| hypothetical protein HMPREF9722_00640 [Treponema denticola ATCC
33520]
gi|449118979|ref|ZP_21755380.1| hypothetical protein HMPREF9725_00845 [Treponema denticola H1-T]
gi|449121368|ref|ZP_21757720.1| hypothetical protein HMPREF9727_00480 [Treponema denticola MYR-T]
gi|448951594|gb|EMB32407.1| hypothetical protein HMPREF9727_00480 [Treponema denticola MYR-T]
gi|448952007|gb|EMB32816.1| hypothetical protein HMPREF9725_00845 [Treponema denticola H1-T]
gi|448962150|gb|EMB42844.1| hypothetical protein HMPREF9722_00640 [Treponema denticola ATCC
33520]
Length = 590
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 345 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 403
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H+ ++ ++
Sbjct: 404 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKHKE--NQILII 461
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 462 GQYLSQLETIAKEINAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 520
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 521 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 574
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 575 EQGYDYSILTE 585
>gi|434385348|ref|YP_007095959.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
gi|428016338|gb|AFY92432.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
Length = 556
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 141/248 (56%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED K D+ LIGPK Y+ W EL+ +GF
Sbjct: 313 EVHLLPAPIFR-ITAQLQARRRLGLTATLIREDGKEGDVFALIGPKRYDVPWRELEGQGF 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ P EY + + + NP K Q L+A + G + ++
Sbjct: 372 IAPAECTEIRVAQDPAGQMEYALAAKRHQFRIAAENPRKNTVVQSLLA--KLPGHRILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + L A P + G T Q ER ++ F+ K+ + +S+V + + DLP+A+
Sbjct: 430 GEYLDQLNALAKLTGLPLVTGKTCQPERDRLYDEFRAG-KITGLILSRVGNFALDLPDAD 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQ+S GSR++EAQRLGR+LR K A + FYTLVS T E ++R RQ FL
Sbjct: 489 VLIQVSGKYGSRQEEAQRLGRVLRPKSDGRAAQ----FYTLVSLRTCEEDFARHRQLFLS 544
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 545 EQGYLYRI 552
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ A T+++ L+L +S SV QW+ + + + I ++ E+K
Sbjct: 219 AGKTMVGLAAIATIQENTLILTSSLTSVRQWQRELLDKTNLAPNSIAEYSGESKQT---A 275
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY ++S+ ++ E Q + WG+++ D+
Sbjct: 276 PITLATYQILSYRSSKTDEFPH-FQLFSARAWGLIIYDE 313
>gi|433602329|ref|YP_007034698.1| Type III restriction protein res subunit [Saccharothrix espanaensis
DSM 44229]
gi|407880182|emb|CCH27825.1| Type III restriction protein res subunit [Saccharothrix espanaensis
DSM 44229]
Length = 553
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGQEGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ EY + + +R L K + ++ H + T+V
Sbjct: 358 IAPAECTEVRVTLTDNERLEYAIAEPDERYKLCSTARTKLPVVRAILDRHP--DEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T ER Q+ F+ ++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLESLGEALDAPIIQGSTKNKEREQLFDAFRRG-ELRVLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVSRDTLDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+YK++
Sbjct: 531 EQGYAYKIV 539
>gi|449105854|ref|ZP_21742547.1| hypothetical protein HMPREF9729_00812 [Treponema denticola ASLM]
gi|451970143|ref|ZP_21923372.1| hypothetical protein HMPREF9728_02584 [Treponema denticola US-Trep]
gi|448966634|gb|EMB47287.1| hypothetical protein HMPREF9729_00812 [Treponema denticola ASLM]
gi|451701205|gb|EMD55685.1| hypothetical protein HMPREF9728_02584 [Treponema denticola US-Trep]
Length = 590
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 345 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 403
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H+ ++ ++
Sbjct: 404 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKHKE--NQILII 461
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 462 GQYLSQLETIAKEINAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 520
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 521 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 574
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 575 EQGYDYSILTE 585
>gi|134097156|ref|YP_001102817.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291005387|ref|ZP_06563360.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133909779|emb|CAL99891.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 553
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIESQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ + Y + R + K + ++ H G+ +V
Sbjct: 358 IAPAECVEVRVTLTDDERLRYATSEAEDRYKVCSTARTKAPVVKAILDRHP--GEPALVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T ER + F+ ++N + VSKVA+ S DLPEA+
Sbjct: 416 GAYLEQLHELGEALDAPIVEGSTKNKEREALFDAFRRG-EINRLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K AE A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----AERKQAHFYSVVSRDTLDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|441515360|ref|ZP_20997162.1| putative ATP-dependent DNA helicase [Gordonia amicalis NBRC 100051]
gi|441449827|dbj|GAC55123.1| putative ATP-dependent DNA helicase [Gordonia amicalis NBRC 100051]
Length = 559
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKDIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ E +Y V + ++ L K + ++ H+ G T+V
Sbjct: 361 IAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAHTKVNVVKAILNKHQ--GAPTLVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 419 GAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANFSIDLPEAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 478 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 533
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 534 EQGYAYRI 541
>gi|453074363|ref|ZP_21977157.1| DNA repair helicase [Rhodococcus triatomae BKS 15-14]
gi|452764769|gb|EME23035.1| DNA repair helicase [Rhodococcus triatomae BKS 15-14]
Length = 559
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 308 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + ++A H+ +T+V
Sbjct: 367 IAPAECIEVRVTLTDAERMAYATAEPEERYKLCSTARTKNAVVKSILAKHD--DSQTLVI 424
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER Q+ F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 425 GAYIDQLDELGEALDAPVIKGSTKTKEREQLFDAFRAG-EIKTLVVSKVANFSIDLPEAS 483
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 484 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDSEYAAHRQRFLA 539
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 540 EQGYAYRI 547
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 215 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEDEIGEYSGEKKEIRP- 273
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 274 ---VTIATYQVITRKTKGEY---KHLELFDSRDWGLVIYDE 308
>gi|116328103|ref|YP_797823.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331444|ref|YP_801162.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120847|gb|ABJ78890.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116125133|gb|ABJ76404.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 569
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMEKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + +F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|449104059|ref|ZP_21740801.1| hypothetical protein HMPREF9730_01698 [Treponema denticola AL-2]
gi|448963916|gb|EMB44590.1| hypothetical protein HMPREF9730_01698 [Treponema denticola AL-2]
Length = 590
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 345 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 403
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H+ ++ ++
Sbjct: 404 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKHKE--NQILII 461
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 462 GQYLSQLETIAKEINAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 520
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 521 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 574
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 575 EQGYDYSILTE 585
>gi|410941403|ref|ZP_11373202.1| type III restriction enzyme, res subunit [Leptospira noguchii str.
2006001870]
gi|410783962|gb|EKR72954.1| type III restriction enzyme, res subunit [Leptospira noguchii str.
2006001870]
Length = 569
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVSMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+LVS+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLVSRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFGANN-WGLIVYDE 309
>gi|29830455|ref|NP_825089.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
gi|29607567|dbj|BAC71624.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
MA-4680]
Length = 547
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 149/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ K + T+ L+ + G + +V
Sbjct: 357 IAPADCVEVRVNLTETERLAYATAETEEKYRFCATTATKRKVTEALV--RKFAGQQILVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIM 538
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGSMAQAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|449116951|ref|ZP_21753395.1| hypothetical protein HMPREF9726_01380 [Treponema denticola H-22]
gi|448952215|gb|EMB33019.1| hypothetical protein HMPREF9726_01380 [Treponema denticola H-22]
Length = 590
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 345 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 403
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H+ ++ ++
Sbjct: 404 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKHKE--NQILII 461
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 462 GQYLSQLETIAKEINAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 520
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 521 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 574
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 575 EQGYDYSILTE 585
>gi|418719290|ref|ZP_13278490.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
gi|418738713|ref|ZP_13295106.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|421094322|ref|ZP_15555042.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410363048|gb|EKP14081.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410744443|gb|EKQ93184.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
gi|410745411|gb|EKQ98321.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 569
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + +F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|456887822|gb|EMF98835.1| helicase C-terminal domain protein [Leptospira borgpetersenii str.
200701203]
Length = 345
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 85 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 143
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 144 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 201
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + +F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 202 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFR-SGKIKSLVVSKVANFSIDLPDAN 260
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 261 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 316
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 317 EQGYEYEIYT 326
>gi|381163282|ref|ZP_09872512.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418461379|ref|ZP_13032454.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359738482|gb|EHK87367.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379255187|gb|EHY89113.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 548
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + ++ H G+ T+V
Sbjct: 358 IAPAECVEVRVTLTDAERLGYATAEADERYRLASTARTKIGVVKSIVERHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++N P + G T ER + F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGAELNAPVVQGSTKNKEREALFDAFRRG-EIDKLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQMSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVSRDTVDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYHIV 539
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAQAEATTLILVTNTVAGRQWKRELVERTSLTEDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 299
>gi|407985074|ref|ZP_11165676.1| type III restriction enzyme, res subunit [Mycobacterium hassiacum
DSM 44199]
gi|407373345|gb|EKF22359.1| type III restriction enzyme, res subunit [Mycobacterium hassiacum
DSM 44199]
Length = 549
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 147/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++ H +G++T+V
Sbjct: 358 IAPAECIEVRVTMTDNERMLYATAEPDERYKICSTVHTKIPVVKSILERH--KGEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T +ER + F+ +V+T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGQELGAPVITGATKNAEREALFDAFRRG-EVSTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ ++ I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKASATTLILVTNTVAGRQWKRELINRTSLTENEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGQY---KHLELFDSRDWGLIIYDE 299
>gi|354614087|ref|ZP_09031975.1| helicase domain-containing protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353221569|gb|EHB85919.1| helicase domain-containing protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 548
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++++G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDIPWRDIEQQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y ++ +R L K + ++ H G+ T+V
Sbjct: 358 IAPAECTEVRVTLTDNERIAYATAESEERYRLASTAHTKSGVIRSIVDKHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T ER + + F+ + +++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGQALDAPVIQGSTRNKEREALFERFR-SGEIDKLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVARDTVDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 207 AGKTLVGAAAMAKAEATTLILVTNTVAGRQWKRELLARTSLTEDEIGEYSGEKKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 --VTIATYQVITRKSKGEY---KHLELFDSRDWGLVIYDE 299
>gi|332380642|gb|AEE65518.1| helicase domain protein [uncultured bacterium BAC AB649/1850]
Length = 553
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y V + +R + K + L+ H ++ +V
Sbjct: 358 IAPAECTEVRVTLTDAERMTYAVTEAEERYRVAATARTKLPVVRALVERHP--DEQVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ + +V T+ +SKV + S DLPEA
Sbjct: 416 GGYIDQLHQLGEYLDAPIVQGSTTNKERERLFDAFR-SGEVKTLVISKVGNFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTIDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
>gi|384567607|ref|ZP_10014711.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384523461|gb|EIF00657.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 548
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y ++ +R L K ++ H G+ T+V
Sbjct: 358 IAPAECIEVRVTLTDAERLAYATAESEERYRLASTAHTKTGVIASIVEKHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++N P + G T ER + F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGAELNAPVVQGSTRNKEREALFDAFRRG-EIDKLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVARDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A R L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMARARATTLILVTNTVAGRQWKRELVERTSLTEDEIGEYSGEKKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRKTKGEY---KHLELFDSRDWGLVIYDE 299
>gi|420154767|ref|ZP_14661647.1| type III restriction enzyme, res subunit [Actinomyces massiliensis
F0489]
gi|394751515|gb|EJF35267.1| type III restriction enzyme, res subunit [Actinomyces massiliensis
F0489]
Length = 559
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +L+ +G+
Sbjct: 314 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDLENQGW 372
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + ++ L P K L+ H RG+ +V
Sbjct: 373 IAPAICTEVRLALDSGERMAYATAEKEEKYRLAAATPAKLDVVDKLLDRH--RGESALVI 430
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A + P I G T+ ER ++ F+ +V T+ VSKVA+ S DLP A+
Sbjct: 431 GQYVDQLEELAEHLGAPLITGATTVRERQRLYGAFRAG-EVRTLVVSKVANFSIDLPGAS 489
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRI+R K+ + A FYT+V++DT++ ++ RQRFL
Sbjct: 490 VAVQVSGSFGSRQEEAQRLGRIVRPKE----DGRQAHFYTVVTRDTVDQEFAAHRQRFLA 545
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 546 EQGYTYDII 554
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + L+L + VS QWK + +++ + I ++ K+ +P
Sbjct: 222 AGKTLVGAASMARSSTTTLILVTNAVSARQWKEELIRFTSLTEDEIGEYSGSRKEVRP-- 279
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L + +WG+++ D+
Sbjct: 280 --VTIATYQVLTTKRKGVF---PHLDLLDSHDWGLIVYDE 314
>gi|398339178|ref|ZP_10523881.1| DNA or RNA helicase [Leptospira kirschneri serovar Bim str. 1051]
gi|418677043|ref|ZP_13238321.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|418688262|ref|ZP_13249418.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|418696605|ref|ZP_13257614.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H1]
gi|418739738|ref|ZP_13296119.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|421090818|ref|ZP_15551608.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 200802841]
gi|421132341|ref|ZP_15592509.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 2008720114]
gi|400322943|gb|EJO70799.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|409956134|gb|EKO15066.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H1]
gi|410000404|gb|EKO51034.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 200802841]
gi|410356106|gb|EKP03463.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 2008720114]
gi|410737119|gb|EKQ81861.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410752860|gb|EKR09832.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 569
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVSMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFGANN-WGLIVYDE 309
>gi|418475464|ref|ZP_13044861.1| ATP-dependent DNA helicase [Streptomyces coelicoflavus ZG0656]
gi|371543924|gb|EHN72687.1| ATP-dependent DNA helicase [Streptomyces coelicoflavus ZG0656]
Length = 548
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 151/251 (60%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y +T ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTDTKRKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L + P I G TS ++R ++ ++F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFESFR-QGEISVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTLDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIM 538
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A R L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAQARSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|289770106|ref|ZP_06529484.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
gi|289700305|gb|EFD67734.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
Length = 548
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 151/251 (60%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 301 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y +T ++ K + T+ ++ RR G + +
Sbjct: 360 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTDTKRKVTEAIV----RRFAGQQIL 415
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L + P I G TS ++R ++ ++F+ +++ + VSKVA+ S DLPE
Sbjct: 416 VIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFESFRQG-EISVLVVSKVANFSIDLPE 474
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 475 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTLDQDFAAHRQRF 530
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 531 LAEQGYAYRIM 541
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 208 GAGKTLVGAGAMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 301
>gi|449126575|ref|ZP_21762860.1| hypothetical protein HMPREF9733_00263 [Treponema denticola SP33]
gi|448946489|gb|EMB27344.1| hypothetical protein HMPREF9733_00263 [Treponema denticola SP33]
Length = 571
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 326 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 384
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H + ++ ++
Sbjct: 385 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKH--KENQILII 442
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++N P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 443 GQYLSQLETIAKEINAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 501
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 502 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 555
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 556 EQGYDYSILTE 566
>gi|392418210|ref|YP_006454815.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617986|gb|AFM19136.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 549
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H + T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMLYATAEPDERYKLCATAHTKIAVVKSILERHP--DEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T +ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLDELGAELDAPVIQGSTKTAEREALFDAFRRG-EIRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K G A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPKAGG----GGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYVI 538
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ +S I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKRELIARTSLTESEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLIIYDE 299
>gi|340625875|ref|YP_004744327.1| putative DNA helicase ERCC3 [Mycobacterium canettii CIPT 140010059]
gi|433625946|ref|YP_007259575.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140060008]
gi|340004065|emb|CCC43201.1| putative DNA helicase ERCC3 [Mycobacterium canettii CIPT 140010059]
gi|432153552|emb|CCK50775.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140060008]
Length = 542
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELDAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ + I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTEIEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|336319557|ref|YP_004599525.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
gi|336103138|gb|AEI10957.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 546
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK ++A W +++ +G+
Sbjct: 298 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRFDAPWKDIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV + Y + ++ L K R + L+A HE G+ T+V
Sbjct: 357 IAPAECIEVRLTLPDADRMAYATAEPEEKYRLAATASGKNRVVEQLVAQHE--GEPTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A + I G T+ ER ++ F+ + +++ + VSKVA+ S DLPEA+
Sbjct: 415 GQYLDQLHELAEHIGADLITGETTVRERQRLFDAFR-SGEISKLVVSKVANFSIDLPEAS 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K A A FYT+V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGSFGSRQEEAQRLGRIMRPK----ASGRTAHFYTVVARDTVDQEFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 530 EQGYAYSIL 538
>gi|302865000|ref|YP_003833637.1| helicase domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|302567859|gb|ADL44061.1| helicase domain protein [Micromonospora aurantiaca ATCC 27029]
Length = 596
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++++G+
Sbjct: 342 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEQQGW 400
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + K + L+ H ++ +V
Sbjct: 401 IAPAECTEVRVTLTDAERLAYATAEAEERYRMAATARTKLPVVRALVDRHP--SEQVLVI 458
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ + ++ T+ +SKV + S DLPEA
Sbjct: 459 GGFLDQLHQLGEYLDAPIVQGSTTNKERERLFDAFR-SGEIRTLVISKVGNFSIDLPEAA 517
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 518 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTIDTEYAAHRQRFLA 573
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 574 EQGYAYTIV 582
>gi|312138404|ref|YP_004005740.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
gi|311887743|emb|CBH47055.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
Length = 552
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + +R L K+ + ++ H G T+V
Sbjct: 360 IAPADCVEVRVTLTDAERMAYATAEPEERYKLCSTARTKHAVVKSILDRHP--GAPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLEELGAELDAPVIQGSTRNKEREALFDRFRAG-EIQTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGEKKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVITRKSKGEY---KHLELFDSRDWGLVIYDE 301
>gi|408531108|emb|CCK29282.1| ATP-dependent DNA helicase [Streptomyces davawensis JCM 4913]
Length = 547
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ L+ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCATTATKRKVTEALV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L +N P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIV 538
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|145596461|ref|YP_001160758.1| helicase domain-containing protein [Salinispora tropica CNB-440]
gi|145305798|gb|ABP56380.1| helicase domain protein [Salinispora tropica CNB-440]
Length = 581
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 146/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++++G+
Sbjct: 327 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEQQGW 385
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + K + L+ H ++T+V
Sbjct: 386 IAPARCTEVRVTLTEAERMAYATAEAEERYRMAATTRTKLPVVKALLDRHP--DEQTLVI 443
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ + ++ T+ +SKV + S DLPEA
Sbjct: 444 GGYIDQLHQLGEYLDAPIVQGATTNRERERLFDAFR-SGELRTLVISKVGNFSIDLPEAA 502
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 503 VAVQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTIDTEYAAHRQRFLA 558
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 559 EQGYAYTIV 567
>gi|404445592|ref|ZP_11010728.1| type III restriction enzyme, res subunit [Mycobacterium vaccae ATCC
25954]
gi|403651886|gb|EJZ06978.1| type III restriction enzyme, res subunit [Mycobacterium vaccae ATCC
25954]
Length = 542
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H + T+V
Sbjct: 351 IAPAECIEVRVTMTDNERMLYATAEPEERYKLCATAHTKMAVVKSILERHP--DEPTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T +ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 409 GAYLDQLDELGAELDAPVIQGSTKNAEREALFDGFRRG-EIRTLVVSKVANFSIDLPEAS 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY+Y +
Sbjct: 524 EQGYAYVI 531
>gi|359771470|ref|ZP_09274921.1| putative ATP-dependent DNA helicase [Gordonia effusa NBRC 100432]
gi|359311357|dbj|GAB17699.1| putative ATP-dependent DNA helicase [Gordonia effusa NBRC 100432]
Length = 556
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ + +Y V + ++ L K + ++ H R T+V
Sbjct: 361 IAPADCIEVRVTLTDDERLQYAVAEPEEKYKLCSTAHTKVNVVKAILDRH--RDAPTLVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T +R + F+ + ++ T+ VSKVA+ S DLPEA+
Sbjct: 419 GAYIDQLEELGEALGAPVIQGSTKNKDREVLFDQFR-SGEIQTLVVSKVANFSIDLPEAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K+ + A FY++VS+DT++ Y+ RQRFL
Sbjct: 478 VAVQVSGTFGSRQEEAQRLGRLLRPKR----DGGQAHFYSVVSRDTLDADYAAHRQRFLA 533
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 534 EQGYAYRI 541
>gi|257067983|ref|YP_003154238.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256558801|gb|ACU84648.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 555
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 143/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWRDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV M Y + + + R L +P K + + H G+ +V
Sbjct: 358 IAPAVCTEVRATMPSADRMAYAMAEAADRPRLGAAHPGKIDVVERIAQRHA--GEPMLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ I G T R ++ F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLEEIAERLGADLITGQTPVRRRQELFDAFR-EGRIDRLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A++ A FYT+V +DT + Y+ RQRFL
Sbjct: 475 VAVQVSGAFGSRQEEAQRLGRLLRPK----ADQRTAHFYTVVMRDTQDQDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + + L+L S VS QWK + +T + I ++ AK+ +P
Sbjct: 206 GAGKTIVGAGAMAAMGRTTLILVTSTVSARQWKQELLRRTTLTEEEIGEYSGAAKEVRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K ++ + ++WG+++ D+
Sbjct: 265 ---VTIATYQVLTMKRK---GVHPHLELMSARDWGLIVYDE 299
>gi|398337001|ref|ZP_10521706.1| superfamily II DNA/RNA helicase [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 569
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMDDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|421099792|ref|ZP_15560436.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
gi|410797216|gb|EKR99331.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
Length = 569
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|408826612|ref|ZP_11211502.1| ATP-dependent DNA helicase [Streptomyces somaliensis DSM 40738]
Length = 547
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ K R T+ ++ + G + +V
Sbjct: 357 IAPADCVEVRVDLTESERLAYATAEAEEKYRFCATTDTKRRVTEAIV--RKFAGQQILVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G T ++R ++ + F+ N +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLGAPVIKGETPNAQREKLFEAFR-NGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHELVRRTSLTEDEIGEYSGARKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|315501497|ref|YP_004080384.1| helicase domain-containing protein [Micromonospora sp. L5]
gi|315408116|gb|ADU06233.1| helicase domain protein [Micromonospora sp. L5]
Length = 615
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++++G+
Sbjct: 361 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEQQGW 419
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + K + L+ H ++ +V
Sbjct: 420 IAPAECTEVRVTLTDAERLAYATAEAEERYRMAATARTKLPVVRALVDRHP--SEQVLVI 477
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P + G T+ ER ++ F+ + ++ T+ +SKV + S DLPEA
Sbjct: 478 GGFLDQLHQLGEYLDAPIVQGSTTNKERERLFDAFR-SGEIRTLVISKVGNFSIDLPEAA 536
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+VS+DT++ Y+ RQRFL
Sbjct: 537 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRQAHFYTVVSRDTIDTEYAAHRQRFLA 592
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 593 EQGYAYTIV 601
>gi|440704816|ref|ZP_20885643.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
gi|440273502|gb|ELP62235.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
Length = 554
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 302 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y +T ++ K + T+ ++ RR G + +
Sbjct: 361 IAPADCVEVRVNLTESERISYATAETEEKYRFCATTATKRKVTEAIV----RRFAGQQIL 416
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L +N P I G T S+R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 417 VIGQYIDQLDELGEHLNAPVIKGETPNSQREKLFDAFR-EGEISVLVVSKVANFSIDLPE 475
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 476 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHKAHFYSVVARDTIDQDFAAHRQRF 531
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 532 LAEQGYAYRIM 542
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 209 GAGKTLVGAGSMAEAKATTLILVTNTVSARQWKHELVKRTSLTEEEIGEYSGTRKEIRP- 267
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 268 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIIYDE 302
>gi|418747212|ref|ZP_13303522.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. CBC379]
gi|418755555|ref|ZP_13311752.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. MOR084]
gi|421110258|ref|ZP_15570759.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. JET]
gi|422003710|ref|ZP_16350938.1| superfamily II DNA/RNA helicase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|409964017|gb|EKO31916.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. MOR084]
gi|410792006|gb|EKR89951.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. CBC379]
gi|410804443|gb|EKS10560.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. JET]
gi|417257680|gb|EKT87077.1| superfamily II DNA/RNA helicase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|456876697|gb|EMF91776.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. ST188]
Length = 569
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 149/260 (57%), Gaps = 10/260 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + ++ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGQIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT--KLAGMEEE 474
QGY Y++ T + G +EE
Sbjct: 541 EQGYEYEIYTLDQFRGAQEE 560
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|407641888|ref|YP_006805647.1| putative DNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407304772|gb|AFT98672.1| putative DNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 545
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 294 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 352
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + +R L K Q ++A H T+V
Sbjct: 353 IAPADCVEVRVTLTDAERMAYATAEPEERYKLCSTAHTKIPVVQSILAKHADA--PTLVI 410
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G T ER ++ + F+ +V + VSKVA+ S DLPEA+
Sbjct: 411 GAYLDQLDELGAALNAPVIQGSTKTKEREELFEAFR-QGEVPVLVVSKVANFSIDLPEAS 469
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 470 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 525
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 526 EQGYAYRI 533
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QW+ + ++ + I ++ E K+ +P
Sbjct: 201 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWRRELLARTSLTEDEIGEYSGERKEIRP- 259
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 260 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 294
>gi|325674600|ref|ZP_08154287.1| DNA repair helicase [Rhodococcus equi ATCC 33707]
gi|325554186|gb|EGD23861.1| DNA repair helicase [Rhodococcus equi ATCC 33707]
Length = 552
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + +R L K+ + ++ H G T+V
Sbjct: 360 IAPADCVEVRVTLTDAERMAYATAEPEERYKLCSTARTKHAVVKSVLDRHP--GAPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLEELGAELDAPVIQGSTRNKEREALFDRFRAG-EIQTLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGEKKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVITRKSKGEY---KHLELFDSRDWGLVIYDE 301
>gi|392403571|ref|YP_006440183.1| helicase domain-containing protein [Turneriella parva DSM 21527]
gi|390611525|gb|AFM12677.1| helicase domain-containing protein [Turneriella parva DSM 21527]
Length = 583
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+K+ +
Sbjct: 314 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELEKKKW 372
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ P+ Y V ++ L NP K R L+ +H R D+ +V
Sbjct: 373 IAEARCVEIRTPLRSLMRGMYSVADDREKFRLSSENPEKMRVIGTLLYHH--RDDQVLVI 430
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + + P I G T ER ++ + F+ ++ + VSKVA+ S DLP+AN
Sbjct: 431 GQYLDQLQRVSARFKIPLITGKTPLDERARLYEAFR-TKQIRALVVSKVANFSIDLPDAN 489
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGR+LR K A FY++++ ++ E + R RQ FL
Sbjct: 490 VAIQISGTFGSRQEEAQRLGRVLRPKGNG----NQALFYSVITNESSEEQFCRNRQLFLT 545
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 546 EQGYEYYI 553
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ A V + L+L + +S+ QWK++ +T +S I ++ + K+ KP
Sbjct: 220 AGKTIVGIGAMHAVGAQTLILVTNTLSIRQWKNEILDKTTIQESEIGEYSGDKKEIKP-- 277
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + WG ++ D+
Sbjct: 278 --ITIATYNILTHRKKKGGDFTH-FHLFSSNNWGFIVYDE 314
>gi|253575758|ref|ZP_04853093.1| type III restriction protein res subunit [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844801|gb|EES72814.1| type III restriction protein res subunit [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 564
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 148/256 (57%), Gaps = 8/256 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED D+ LIGPK Y+ W L++ GF
Sbjct: 316 EVHLLPAPIFRATADI-QATRRLGLTATLIREDGCERDVFSLIGPKRYDVPWRTLEESGF 374
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+V C E+ M +Y + ++ + NP Y+ R + ++
Sbjct: 375 IAQVDCQEIRVAMPEPQQNQYARAEGREKFRIAAENP--YKNEIVRRLLDRHRDRQVLII 432
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ P I G T Q+ER ++ Q F+ ++ + VSKVA+ + DLP+A+
Sbjct: 433 GQYLDQLQSIAAELHVPLITGSTPQAERSRLFQAFR-EGEIPVLAVSKVANFAVDLPDAS 491
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K+ A+FYTLVS++T E ++ +RQ FL+
Sbjct: 492 VAIQISGSFGSRQEEAQRLGRILRPKRDG----GRAYFYTLVSENTREQEFALRRQLFLL 547
Query: 457 NQGYSYKVITKLAGME 472
QGY Y V + G+E
Sbjct: 548 EQGYEYAVRREQEGIE 563
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG+ A + L+L ++ SV QW + +T + ++ E K KP
Sbjct: 221 GAGKTVVGLAAMERFQCETLILTSNVTSVRQWISEMISKTTLPPEAVGEYSGEKKQVKP- 279
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V+TY +++H + R E + M Q ++WG+++ D+
Sbjct: 280 ---VTVSTYQILTH-RARKEEGFKHMSLFQERDWGLIIYDE 316
>gi|410451517|ref|ZP_11305520.1| type III restriction enzyme, res subunit [Leptospira sp. Fiocruz
LV3954]
gi|410014561|gb|EKO76690.1| type III restriction enzyme, res subunit [Leptospira sp. Fiocruz
LV3954]
Length = 569
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 149/260 (57%), Gaps = 10/260 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + ++ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISRKFNIPLITGKTPLPERQTLYDAFR-SGQIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT--KLAGMEEE 474
QGY Y++ T + G +EE
Sbjct: 541 EQGYEYEIYTLDQFRGAQEE 560
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|359686072|ref|ZP_09256073.1| superfamily II DNA/RNA helicase [Leptospira santarosai str.
2000030832]
Length = 557
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 149/260 (57%), Gaps = 10/260 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 297 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 356 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + ++ ++ VSKVA+ S DLP+AN
Sbjct: 414 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGQIKSLVVSKVANFSIDLPDAN 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 473 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 528
Query: 457 NQGYSYKVIT--KLAGMEEE 474
QGY Y++ T + G +EE
Sbjct: 529 EQGYEYEIYTLDQFRGAQEE 548
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 203 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 260
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 261 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 297
>gi|24214829|ref|NP_712310.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
gi|45657657|ref|YP_001743.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074191|ref|YP_005988508.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
gi|417761127|ref|ZP_12409141.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000624]
gi|417763892|ref|ZP_12411865.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417768573|ref|ZP_12416501.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Pomona]
gi|417775460|ref|ZP_12423313.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000621]
gi|417783096|ref|ZP_12430819.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. C10069]
gi|418667771|ref|ZP_13229176.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418672678|ref|ZP_13234014.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000623]
gi|418681222|ref|ZP_13242455.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418692365|ref|ZP_13253443.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. FPW2026]
gi|418701013|ref|ZP_13261948.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418703992|ref|ZP_13264873.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418711136|ref|ZP_13271902.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418715905|ref|ZP_13275992.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 08452]
gi|418726410|ref|ZP_13285021.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12621]
gi|421085986|ref|ZP_15546837.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. HAI1594]
gi|421102319|ref|ZP_15562923.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421107529|ref|ZP_15568081.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H2]
gi|421116845|ref|ZP_15577220.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421120579|ref|ZP_15580890.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. Brem 329]
gi|421124173|ref|ZP_15584443.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421134687|ref|ZP_15594820.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|24195842|gb|AAN49328.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
gi|45600897|gb|AAS70380.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353457980|gb|AER02525.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
gi|400327043|gb|EJO79299.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400353724|gb|EJP05877.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400357598|gb|EJP13718.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. FPW2026]
gi|409943121|gb|EKN88724.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000624]
gi|409949546|gb|EKN99522.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Pomona]
gi|409953797|gb|EKO08293.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. C10069]
gi|409960320|gb|EKO24074.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12621]
gi|410007545|gb|EKO61255.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H2]
gi|410011655|gb|EKO69771.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410021271|gb|EKO88063.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410346693|gb|EKO97663.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. Brem 329]
gi|410367433|gb|EKP22817.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410431551|gb|EKP75911.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. HAI1594]
gi|410438660|gb|EKP87746.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410574785|gb|EKQ37814.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000621]
gi|410580366|gb|EKQ48191.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000623]
gi|410756216|gb|EKR17841.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410759911|gb|EKR26113.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410766360|gb|EKR37046.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410768736|gb|EKR43983.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410788133|gb|EKR81859.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 08452]
gi|455669031|gb|EMF34199.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455789603|gb|EMF41524.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456821496|gb|EMF70002.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. LT1962]
gi|456970563|gb|EMG11328.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
gi|456984533|gb|EMG20568.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 569
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIGLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFGANN-WGLIVYDE 309
>gi|256397207|ref|YP_003118771.1| helicase domain-containing protein [Catenulispora acidiphila DSM
44928]
gi|256363433|gb|ACU76930.1| helicase domain protein [Catenulispora acidiphila DSM 44928]
Length = 548
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED ++ LIGPK ++A W +++ +G+
Sbjct: 297 EVHLLPAPVFRFTADI-QSRRRLGLTATLVREDGLEGEVFSLIGPKRFDAPWKDIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ + K + L+ H G+ T+V
Sbjct: 356 IAPADCVEVRVTLTDHERLRYASSEPEEKYRIASTTATKSTLVEALVKKHA--GEPTLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P + G T+ ER ++ + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 414 GQYLEQLDDLGARLNAPVLKGSTTVKERERLYEGFRTG-EIPTLVVSKVANFSVDLPEAS 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FY +VS+DT++ Y+ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGRGARFYAVVSRDTVDQEYAAHRQRFLA 528
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 529 EQGYAYRI 536
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A V L+L + VSV QW+ + +T D I ++ K+ +P
Sbjct: 204 GAGKTIVGAAAMAGVEATTLILVTNTVSVHQWRKELLKRTTLTDEEIGEYSGARKEIRP- 262
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + ++ ++WG+++ D+
Sbjct: 263 ---VTIATYQVLTRKTKGVY---ANLELFDARDWGLIVYDE 297
>gi|407276999|ref|ZP_11105469.1| DNA repair helicase [Rhodococcus sp. P14]
Length = 552
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y V + +R L K + ++A H R T++
Sbjct: 360 IAPAECVEVRVTLTDAERMAYAVAEPEERYKLCSTAHTKIAVVKSILARH--RDSPTLII 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G T ER ++ F+ ++ + VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLDELGAALGAPVIKGSTRNKEREELFDRFRAG-ELKVLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 209 AGKTMVGAAAMAKAGATTLILVTNTVAGRQWKRELIARTSLTEDEIGEYSGEKKEIRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+M+ D+
Sbjct: 267 --VTIATYQVITRKSKGEY---RNLELFDSRDWGLMIYDE 301
>gi|261405781|ref|YP_003242022.1| type III restriction protein res subunit [Paenibacillus sp.
Y412MC10]
gi|261282244|gb|ACX64215.1| type III restriction protein res subunit [Paenibacillus sp.
Y412MC10]
Length = 595
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 150/252 (59%), Gaps = 14/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED + +D+ LIGPK YE W L+ +G+
Sbjct: 324 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGRESDVFSLIGPKRYEMPWKRLEAQGW 382
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVM---NPNKYRATQYLIAYHERRGDKT 333
IA V C E+ P+ P+ RE C+T+ + Y + NP+K + L+ H + +T
Sbjct: 383 IASVTCTEIKVPL-PDEIRE--ACETANKREQYRLAAENPSKLDVIRQLVDVH--KDAQT 437
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ + L + ++ P I G +Q +R + F+ + + VSKVA+ + DLP
Sbjct: 438 LIIGQYLDQLHAISRELQAPLITGQMTQDQRNEWYNAFR-EGNIRVLVVSKVANFAVDLP 496
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V I++S GSR++EAQRLGR+LR K G E A+FY LV++D+ E ++ +RQ
Sbjct: 497 DASVAIEVSGSYGSRQEEAQRLGRLLRPKSG----ENRAYFYALVTEDSREEIFAIRRQL 552
Query: 454 FLINQGYSYKVI 465
FLI QGY Y I
Sbjct: 553 FLIEQGYEYHAI 564
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A ++ L+L ++ SV QW + +T I ++ + K +P
Sbjct: 230 AGKTVIGIAAMRELQCETLILTSNTTSVRQWIAELMQKTTLSVDEIGEYSGQRKQVRP-- 287
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +++H Q + E Q M+ + WG+++ D+
Sbjct: 288 --VTVATYHILTHRQGKG-EEQQHMKLFNERRWGLIIYDE 324
>gi|31792049|ref|NP_854542.1| DNA helicase [Mycobacterium bovis AF2122/97]
gi|121636784|ref|YP_977007.1| DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224989255|ref|YP_002643942.1| DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|378770618|ref|YP_005170351.1| putative DNA helicase [Mycobacterium bovis BCG str. Mexico]
gi|449062894|ref|YP_007429977.1| DNA helicase [Mycobacterium bovis BCG str. Korea 1168P]
gi|31617636|emb|CAD93746.1| PROBABLE DNA HELICASE [Mycobacterium bovis AF2122/97]
gi|121492431|emb|CAL70899.1| Probable dna helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224772368|dbj|BAH25174.1| putative DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|341600800|emb|CCC63471.1| probable DNA helicase [Mycobacterium bovis BCG str. Moreau RDJ]
gi|356592939|gb|AET18168.1| Putative DNA helicase [Mycobacterium bovis BCG str. Mexico]
gi|449031402|gb|AGE66829.1| DNA helicase [Mycobacterium bovis BCG str. Korea 1168P]
Length = 542
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRPA- 258
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 259 ---TISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|294996341|ref|ZP_06802032.1| DNA helicase ercc3 [Mycobacterium tuberculosis 210]
gi|297633378|ref|ZP_06951158.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|308371780|ref|ZP_07426215.2| hypothetical protein TMDG_02629 [Mycobacterium tuberculosis
SUMu004]
gi|383306761|ref|YP_005359572.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB327]
gi|385990323|ref|YP_005908621.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5180]
gi|386003879|ref|YP_005922158.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB423]
gi|308335490|gb|EFP24341.1| hypothetical protein TMDG_02629 [Mycobacterium tuberculosis
SUMu004]
gi|339297516|gb|AEJ49626.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5180]
gi|379027027|dbj|BAL64760.1| DNA helicase [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|380720714|gb|AFE15823.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB327]
gi|380724367|gb|AFE12162.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB423]
Length = 549
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 358 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 299
>gi|418733506|ref|ZP_13290630.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12758]
gi|410773115|gb|EKR53146.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12758]
Length = 569
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + +Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIGLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + K N P I G T ER + F+ + K+ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFR-SGKIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GHDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QW+++ + I ++ E K+ +P
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFGANN-WGLIVYDE 309
>gi|183984638|ref|YP_001852929.1| DNA helicase Ercc3 [Mycobacterium marinum M]
gi|183177964|gb|ACC43074.1| DNA helicase Ercc3 [Mycobacterium marinum M]
Length = 549
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H G++T+V
Sbjct: 358 IAPAECVEVRVTMTDSERMTYATAEPEERYRLCSTVHTKIAVVKSILQRHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGTELDAPVIQGATKTREREALFDAFRRG-EIATLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGGAMFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAQATTLILVTNIVAARQWKRELVARTSLTEEEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITRRSKGEY---RHLELFDSRDWGLIIYDE 299
>gi|433633918|ref|YP_007267545.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070017]
gi|432165511|emb|CCK62989.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070017]
Length = 538
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDNERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELSAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|433629951|ref|YP_007263579.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070010]
gi|432161544|emb|CCK58889.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070010]
Length = 542
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDNERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELSAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|424946614|ref|ZP_18362310.1| DNA helicase [Mycobacterium tuberculosis NCGM2209]
gi|358231129|dbj|GAA44621.1| DNA helicase [Mycobacterium tuberculosis NCGM2209]
Length = 534
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 284 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 342
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 343 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 400
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 401 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 459
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 460 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 515
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 516 EQGYGYII 523
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 191 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP- 249
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 250 ---VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 284
>gi|308397334|ref|ZP_07492493.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu012]
gi|308366928|gb|EFP55779.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu012]
Length = 544
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 294 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 352
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 353 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 410
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 411 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 469
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 470 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 525
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 526 EQGYGYII 533
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 202 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 259
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 260 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 294
>gi|291438904|ref|ZP_06578294.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
gi|291341799|gb|EFE68755.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
Length = 547
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 151/251 (60%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y +T ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ + F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFR-QGEISVLVVSKVANFSVDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V +Q+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAVQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIV 538
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGSMAQAQSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTRRKGVYP---HLELFDSRDWGLIVYDE 298
>gi|443492737|ref|YP_007370884.1| DNA helicase Ercc3 [Mycobacterium liflandii 128FXT]
gi|442585234|gb|AGC64377.1| DNA helicase Ercc3 [Mycobacterium liflandii 128FXT]
Length = 549
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H G++T+V
Sbjct: 358 IAPAECVEVRVTMTDSERMTYATAEPEERYRLCSTVHTKIAVVKSILQRHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGTELDAPVIQGATKTREREALFDAFRRG-EIATLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGGAMFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAQATTLILVTNIVAARQWKRELVARTSLTEEEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITRRSKGEY---RHLELFDSRDWGLIIYDE 299
>gi|335041027|ref|ZP_08534144.1| type III restriction protein res subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334179004|gb|EGL81652.1| type III restriction protein res subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 569
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 143/257 (55%), Gaps = 8/257 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA ++R ++ QS +LGLTATL+RED + D+ LIGPK Y+ W EL+ +G
Sbjct: 321 EVHLLPAPVYRATASL-QSTRRLGLTATLVREDGREEDVFSLIGPKRYDLPWKELEHKGH 379
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C + + P R Y + ++ + NP K + L+ H R D+ ++
Sbjct: 380 IAEAICTAIRVDLDPALKRTYHLAPEKDKMRIAQENPQKLAVVKELLNKH--REDQVLII 437
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V ++ + P I G T ER ++ F+ ++ + VSKVA+ + DLP A
Sbjct: 438 GQYVRQMEALGMLFKVPVITGKTKHGERDRLYAQFRTG-EIRVLAVSKVANFAIDLPAAA 496
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K G E A+FY +V++D+ + Y+ KRQ FL+
Sbjct: 497 VAIQVSGTYGSRQEEAQRLGRILRPKPG----ENKAYFYHIVTKDSKDQDYALKRQLFLV 552
Query: 457 NQGYSYKVITKLAGMEE 473
QGY Y V+ L E
Sbjct: 553 EQGYRYHVVDYLQDYSE 569
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-DKPMG 96
AGK+++G+ + L+L ++ SV QWK + +T ++ + +T++ K KP
Sbjct: 227 AGKTIIGIAVMVRQQCATLILTSNETSVRQWKREILEKTTLTENEVGEYTTQTKLIKP-- 284
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY M++ +S A M + + WG+++ D+
Sbjct: 285 --VTIATYQMLTFRPSQS-AAFGHMHLFKRRRWGLIIYDE 321
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF--------- 226
RPL + P+ I+LE P Y L + ++ + PEHIH P ++
Sbjct: 7 RPLVIQPDRTIYLEVNHPQYEDVRQKLQSFSDLIKSPEHIHTYRITPLSLWHAAARGQRA 66
Query: 227 RRVLTIVQSHCKLGLT---ATLLRED-DKIADLNFL 258
+++ +Q++ K LT A +RED DK L +
Sbjct: 67 EDIISFLQAYAKFPLTNDVAQSIREDMDKYGQLTLV 102
>gi|329941405|ref|ZP_08290684.1| DNA helicase [Streptomyces griseoaurantiacus M045]
gi|329299936|gb|EGG43835.1| DNA helicase [Streptomyces griseoaurantiacus M045]
Length = 798
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 152/260 (58%), Gaps = 12/260 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 547 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 605
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ ++ RR G + +
Sbjct: 606 IAPADCVEVRVNLTDAERLAYATAEAEEKYRFCATTATKRKVTEAIV----RRFAGQQIL 661
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G T+ ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 662 VIGQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRTG-EISVLVVSKVANFSIDLPE 720
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V +Q+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 721 ATVAVQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTLDQDFAAHRQRF 776
Query: 455 LINQGYSYKVITKLAGMEEE 474
L QGY+Y+++ + EE
Sbjct: 777 LAEQGYAYRIVDADELLTEE 796
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 455 AGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 512
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 513 --VTIATYQVLTTKRKGVYP---HLELFDSRDWGLILYDE 547
>gi|383775537|ref|YP_005460103.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
gi|381368769|dbj|BAL85587.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
Length = 553
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 147/252 (58%), Gaps = 14/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV- 335
IA +C EV ++ Y V + +R + K + L+ H G++ +V
Sbjct: 358 IAPAECVEVRVTLTDAERMAYAVTEAEERYRVAASARTKLPVVKALVEKHP--GEQVLVI 415
Query: 336 --FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
F D + L Y ++ P + G T+ ER ++ F+ + + T+ +SKV + S DLP
Sbjct: 416 GGFLDQLHELGEY---LDAPIVQGSTTNKERERLFDAFR-DGSLRTLVLSKVGNFSIDLP 471
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V IQ+S GSR++EAQRLGR+LR K + A FYT+VS+DT++ Y+ RQR
Sbjct: 472 EAAVAIQVSGTFGSRQEEAQRLGRVLRPK----GDGRQAHFYTVVSRDTIDTEYAAHRQR 527
Query: 454 FLINQGYSYKVI 465
FL QGY+Y ++
Sbjct: 528 FLAEQGYAYTIV 539
>gi|419962442|ref|ZP_14478434.1| DNA repair helicase [Rhodococcus opacus M213]
gi|424854109|ref|ZP_18278467.1| DNA repair helicase [Rhodococcus opacus PD630]
gi|356664156|gb|EHI44249.1| DNA repair helicase [Rhodococcus opacus PD630]
gi|414572195|gb|EKT82896.1| DNA repair helicase [Rhodococcus opacus M213]
Length = 559
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 144/249 (57%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 308 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK-TIV 335
IA C EV ++ Y V + +R L K + ++ ER D T++
Sbjct: 367 IAPADCVEVRVTLTDAERMSYAVAEPDERYKLCSTAHTKIAVVKSIL---ERHTDAPTLI 423
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L +N P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 424 IGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANFSIDLPEA 482
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 483 SVAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFL 538
Query: 456 INQGYSYKV 464
QGY+Y++
Sbjct: 539 AEQGYAYRI 547
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 215 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 273
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 274 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 308
>gi|429193886|ref|ZP_19186022.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
gi|428670413|gb|EKX69300.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
Length = 547
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCSTTATKRKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ F+ ++N + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFR-EGEINVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIM 538
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|41406897|ref|NP_959733.1| hypothetical protein MAP0799c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417747240|ref|ZP_12395714.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|41395247|gb|AAS03116.1| hypothetical protein MAP_0799c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336461259|gb|EGO40134.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 549
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H G++T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMMYATAEPEERYRLCSTVHTKIAVVKSILDKHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ +VNT+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGEQLGAPVIQGSTRTKEREELFDAFRRG-EVNTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGGAVFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ + + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITRRTRGEY---RHLELFDSRDWGLIIYDE 299
>gi|289442270|ref|ZP_06432014.1| DNA helicase ercc3 [Mycobacterium tuberculosis T46]
gi|289415189|gb|EFD12429.1| DNA helicase ercc3 [Mycobacterium tuberculosis T46]
Length = 542
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRHTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|148660638|ref|YP_001282161.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Ra]
gi|148822069|ref|YP_001286823.1| DNA helicase ercc3 [Mycobacterium tuberculosis F11]
gi|253800117|ref|YP_003033118.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 1435]
gi|254549837|ref|ZP_05140284.1| DNA helicase ercc3 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289446426|ref|ZP_06436170.1| DNA helicase ercc3 [Mycobacterium tuberculosis CPHL_A]
gi|289573483|ref|ZP_06453710.1| DNA helicase ercc3 [Mycobacterium tuberculosis K85]
gi|289744587|ref|ZP_06503965.1| DNA helicase ercc3 [Mycobacterium tuberculosis 02_1987]
gi|289752915|ref|ZP_06512293.1| DNA helicase ercc3 [Mycobacterium tuberculosis EAS054]
gi|289756947|ref|ZP_06516325.1| DNA helicase ercc3 [Mycobacterium tuberculosis T85]
gi|289760993|ref|ZP_06520371.1| DNA helicase ercc3 [Mycobacterium tuberculosis GM 1503]
gi|297730363|ref|ZP_06959481.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN R506]
gi|298524354|ref|ZP_07011763.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306774985|ref|ZP_07413322.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu001]
gi|306782101|ref|ZP_07420438.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu002]
gi|306783529|ref|ZP_07421851.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu003]
gi|306792234|ref|ZP_07430536.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu005]
gi|306796632|ref|ZP_07434934.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu006]
gi|306802519|ref|ZP_07439187.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu008]
gi|306966897|ref|ZP_07479558.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu009]
gi|307078820|ref|ZP_07487990.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu011]
gi|308375273|ref|ZP_07443369.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu007]
gi|308378741|ref|ZP_07483753.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu010]
gi|313657689|ref|ZP_07814569.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN V2475]
gi|339630926|ref|YP_004722568.1| DNA helicase [Mycobacterium africanum GM041182]
gi|375297350|ref|YP_005101617.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|385997642|ref|YP_005915940.1| DNA helicase ErcC3 [Mycobacterium tuberculosis CTRI-2]
gi|392385571|ref|YP_005307200.1| ercc3 [Mycobacterium tuberculosis UT205]
gi|392433556|ref|YP_006474600.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 605]
gi|397672677|ref|YP_006514212.1| DNA excision repair protein ERCC-3 [Mycobacterium tuberculosis
H37Rv]
gi|422811811|ref|ZP_16860205.1| DNA helicase ercc3 [Mycobacterium tuberculosis CDC1551A]
gi|424805643|ref|ZP_18231074.1| DNA helicase ercc3 [Mycobacterium tuberculosis W-148]
gi|448824750|ref|NP_215376.3| DNA helicase Ercc3 [Mycobacterium tuberculosis H37Rv]
gi|148504790|gb|ABQ72599.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
H37Ra]
gi|148720596|gb|ABR05221.1| DNA helicase ercc3 [Mycobacterium tuberculosis F11]
gi|253321620|gb|ACT26223.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 1435]
gi|289419384|gb|EFD16585.1| DNA helicase ercc3 [Mycobacterium tuberculosis CPHL_A]
gi|289537914|gb|EFD42492.1| DNA helicase ercc3 [Mycobacterium tuberculosis K85]
gi|289685115|gb|EFD52603.1| DNA helicase ercc3 [Mycobacterium tuberculosis 02_1987]
gi|289693502|gb|EFD60931.1| DNA helicase ercc3 [Mycobacterium tuberculosis EAS054]
gi|289708499|gb|EFD72515.1| DNA helicase ercc3 [Mycobacterium tuberculosis GM 1503]
gi|289712511|gb|EFD76523.1| DNA helicase ercc3 [Mycobacterium tuberculosis T85]
gi|298494148|gb|EFI29442.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308216480|gb|EFO75879.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu001]
gi|308325182|gb|EFP14033.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu002]
gi|308331690|gb|EFP20541.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu003]
gi|308339288|gb|EFP28139.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu005]
gi|308342965|gb|EFP31816.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu006]
gi|308346849|gb|EFP35700.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu007]
gi|308350765|gb|EFP39616.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu008]
gi|308355426|gb|EFP44277.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu009]
gi|308359379|gb|EFP48230.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu010]
gi|308363287|gb|EFP52138.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu011]
gi|323720724|gb|EGB29800.1| DNA helicase ercc3 [Mycobacterium tuberculosis CDC1551A]
gi|326904919|gb|EGE51852.1| DNA helicase ercc3 [Mycobacterium tuberculosis W-148]
gi|328459855|gb|AEB05278.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|339330282|emb|CCC25942.1| putative DNA helicase ERCC3 [Mycobacterium africanum GM041182]
gi|344218688|gb|AEM99318.1| DNA helicase ErcC3 [Mycobacterium tuberculosis CTRI-2]
gi|378544122|emb|CCE36395.1| ercc3 [Mycobacterium tuberculosis UT205]
gi|392054965|gb|AFM50523.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 605]
gi|395137582|gb|AFN48741.1| DNA excision repair protein ERCC-3 [Mycobacterium tuberculosis
H37Rv]
gi|440580326|emb|CCG10729.1| putative DNA HELICASE ERCC3 [Mycobacterium tuberculosis 7199-99]
gi|444894355|emb|CCP43609.1| DNA helicase Ercc3 [Mycobacterium tuberculosis H37Rv]
Length = 542
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|118466248|ref|YP_880250.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
104]
gi|254773876|ref|ZP_05215392.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
subsp. avium ATCC 25291]
gi|118167535|gb|ABK68432.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
104]
Length = 549
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H G++T+V
Sbjct: 358 IAPAECVEVRVTMTDNERMMYATAEPEERYRLCSTVHTKIAVVKSILDKHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ +VNT+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDELGEQLGAPVIQGSTRTKEREELFDAFRRG-EVNTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGGAVFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVTRTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 299
>gi|269957708|ref|YP_003327497.1| type III restriction protein res subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269306389|gb|ACZ31939.1| type III restriction protein res subunit [Xylanimonas
cellulosilytica DSM 15894]
Length = 558
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 309 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIEAQGY 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y V + + L K + ++A H D+ +V
Sbjct: 368 IAPADCVEVRLTLPESERMTYAVAEPEDKYRLAATASGKNPVVERIVAAHP--DDQVLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + ++ P I G T+ ER ++ F+ + +V+ + VSKVA+ S DLPEA+
Sbjct: 426 GQYLDQLEELSAHLDAPLITGATTIRERQRLFDAFR-SGEVSRLVVSKVANFSIDLPEAS 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR++R K+ + A FY +VS+DT++ ++ RQRFL
Sbjct: 485 VAIQVSGSFGSRQEEAQRLGRVMRPKQ----DGRTAHFYAVVSRDTVDQDFAAHRQRFLA 540
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 541 EQGYAYRIV 549
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A L+L + VS QWK + +T + I ++ K+ KP
Sbjct: 217 AGKTIVGAAAMAKSGTTTLILVTNTVSARQWKDELIRRTTLTEEEIGEYSGTRKEIKP-- 274
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ L ++WG+++ D+
Sbjct: 275 --VTIATYQVLTTKRKGVY---AHLELLDARDWGLIVYDE 309
>gi|111021918|ref|YP_704890.1| DNA repair helicase [Rhodococcus jostii RHA1]
gi|110821448|gb|ABG96732.1| probable DNA repair helicase [Rhodococcus jostii RHA1]
Length = 584
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 144/249 (57%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 333 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 391
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK-TIV 335
IA C EV ++ Y V + +R L K + ++ ER D T++
Sbjct: 392 IAPADCVEVRVTLTDAERMSYAVAEPDERYKLCSTAHTKIAVVKSIL---ERHTDAPTLI 448
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L +N P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 449 IGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANFSIDLPEA 507
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 508 SVAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFL 563
Query: 456 INQGYSYKV 464
QGY+Y++
Sbjct: 564 AEQGYAYRI 572
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 240 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 298
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 299 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 333
>gi|408679846|ref|YP_006879673.1| putative ATP-dependent DNA helicase [Streptomyces venezuelae ATCC
10712]
gi|328884175|emb|CCA57414.1| putative ATP-dependent DNA helicase [Streptomyces venezuelae ATCC
10712]
Length = 546
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ K + T+ L+ E G + +V
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEAEEKYRFCATTATKRKVTEALVKKFE--GQQILVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETPNAQREKLFDAFRTG-EISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIV 538
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTKKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTKRKGIY---PHLELFDSRDWGLIVYDE 298
>gi|397735054|ref|ZP_10501757.1| type III restriction enzyme, res subunit [Rhodococcus sp. JVH1]
gi|396929279|gb|EJI96485.1| type III restriction enzyme, res subunit [Rhodococcus sp. JVH1]
Length = 559
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 144/249 (57%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 308 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK-TIV 335
IA C EV ++ Y V + +R L K + ++ ER D T++
Sbjct: 367 IAPADCVEVRVTLTDAERMSYAVAEPDERYKLCSTAHTKIAVVKSIL---ERHTDAPTLI 423
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L +N P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 424 IGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANFSIDLPEA 482
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 483 SVAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFL 538
Query: 456 INQGYSYKV 464
QGY+Y++
Sbjct: 539 AEQGYAYRI 547
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 215 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 273
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 274 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 308
>gi|380301717|ref|ZP_09851410.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 554
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 143/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWRDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M E Y + + R L + K + L H G+ +V
Sbjct: 358 IAPAECTEVRVSMPAEDRMAYAMAEAEDRPRLGAAHGAKVPVVRALAERHP--GEPLLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + ++ I G T R Q+ F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GQYLDQLEEISTELGAELITGQTPVKRRQQLFDAFRAG-EIDRLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ A FYT+V +DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGAFGSRQEEAQRLGRLLRPK----ADGRAAHFYTVVMRDTVDQDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y +I
Sbjct: 531 EQGYAYAII 539
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + + L+L S VS QWK + +T + I ++ K+ +P
Sbjct: 206 GAGKTLVGAGAMAAMGRTTLILVTSTVSARQWKAELLRRTTLTEDEIGEYSGTTKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K ++ + ++WG+++ D+
Sbjct: 265 ---VTIATYQVLTAKRK---GVHPHLELMSARDWGLIVYDE 299
>gi|440776231|ref|ZP_20955081.1| hypothetical protein D522_04953 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436723722|gb|ELP47507.1| hypothetical protein D522_04953 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 542
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H G++T+V
Sbjct: 351 IAPAECVEVRVTMTDNERMMYATAEPEERYRLCSTVHTKIAVVKSILDKHP--GEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ +VNT+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGEQLGAPVIQGSTRTKEREELFDAFRRG-EVNTLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGGAVFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
>gi|345854813|ref|ZP_08807609.1| DNA helicase [Streptomyces zinciresistens K42]
gi|345633718|gb|EGX55429.1| DNA helicase [Streptomyces zinciresistens K42]
Length = 546
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K R T+ L+ RR G + +
Sbjct: 356 IAPADCVEVRVNLTDAERLAYATAEQEEKYRFCATTDTKRRVTEALV----RRFAGQQIL 411
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 412 VIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFGAFR-EGEISVLVVSKVANFSIDLPE 470
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 471 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 526
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 527 LAEQGYAYRIV 537
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 AGKTLVGAGAMAEAKSTTLILVTNTVSARQWKHELVKRTSLTEEEIGEYSGTRKEIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 297
>gi|226364428|ref|YP_002782210.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
gi|226242917|dbj|BAH53265.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
Length = 559
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 144/249 (57%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 308 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK-TIV 335
IA C EV ++ Y V + +R L K + ++ ER D T++
Sbjct: 367 IAPADCVEVRVTLTDAERMAYAVAEPDERYKLCSTAHTKIAVVKSIL---ERHTDAPTLI 423
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L +N P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 424 IGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANFSIDLPEA 482
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 483 SVAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFL 538
Query: 456 INQGYSYKV 464
QGY+Y++
Sbjct: 539 AEQGYAYRI 547
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 215 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 273
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 274 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 308
>gi|410865494|ref|YP_006980105.1| DNA or RNA helicase of superfamily II [Propionibacterium
acidipropionici ATCC 4875]
gi|410822135|gb|AFV88750.1| DNA or RNA helicase of superfamily II [Propionibacterium
acidipropionici ATCC 4875]
Length = 551
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 148/252 (58%), Gaps = 15/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK Y+A W E++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEEDVFTLIGPKRYDAPWKEIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN---PNKYRATQYLIAYHERRGDKT 333
IA C EV + + E + C ++ + Y M +K + L+ H RG T
Sbjct: 360 IAPADCVEVRVNPTED---ERMACALAEPDVRYRMASTLASKNAVVRDLVERH--RGQPT 414
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
+V V L+ A ++ I G T+ R +I Q F+ + ++N + VSKVA+ S DLP
Sbjct: 415 LVIGQYVDQLEELADELGCEIITGATTSLRRQKIYQQFR-DGEINLLVVSKVANFSIDLP 473
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
A V IQ+S GSR++EAQRLGR+LR K G +A FY +VS+DT++ ++ RQR
Sbjct: 474 SAEVAIQVSGSFGSRQEEAQRLGRLLRPKHGLVAR-----FYAVVSRDTVDADFAAHRQR 528
Query: 454 FLINQGYSYKVI 465
FL QGYSY+++
Sbjct: 529 FLAEQGYSYRIV 540
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG TA + L+L + VS QWK + ++ I ++ K+ +P
Sbjct: 209 AGKTLVGATAMSLAQCTTLILVTNTVSARQWKDELVRRTSLTADEIGEYSGSRKEVRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I T KR ++ + ++WG+++ D+
Sbjct: 267 --VTIATYQVI--TTKRH-GVHPHLELFEARDWGLVIYDE 301
>gi|289749381|ref|ZP_06508759.1| DNA helicase ercc3 [Mycobacterium tuberculosis T92]
gi|289689968|gb|EFD57397.1| DNA helicase ercc3 [Mycobacterium tuberculosis T92]
Length = 531
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRHTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|15828157|ref|NP_302420.1| DNA helicase [Mycobacterium leprae TN]
gi|221230634|ref|YP_002504050.1| DNA helicase [Mycobacterium leprae Br4923]
gi|13093711|emb|CAC31112.1| probable DNA helicase [Mycobacterium leprae]
gi|219933741|emb|CAR72254.1| probable DNA helicase [Mycobacterium leprae Br4923]
Length = 549
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +L+++G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDTPWKDLEEQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + +K + +++ H G++T+V
Sbjct: 358 IAPAKCVEVRVTLTNNERMTYATAEPEERYRVCSTAHSKIAVVKSVLSRHP--GEQTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G T ER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLNELGSELNAPIIQGSTRTKEREALFDAFRRG-EVFTLVVSKVANFSIDLPEAA 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGYSY +
Sbjct: 531 EQGYSYII 538
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAKTGATTLILVTNIVVARQWKRELITHTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+H K + + ++ +++WG+++ D+
Sbjct: 265 ---VTISTYQMITHRTKGEY---RHLELFNSRDWGLIIYDE 299
>gi|433640979|ref|YP_007286738.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070008]
gi|432157527|emb|CCK54805.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070008]
Length = 542
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTAGL-QSKRRLGLTATLIREDRREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|398345432|ref|ZP_10530135.1| DNA or RNA helicase [Leptospira inadai serovar Lyme str. 10]
Length = 553
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 297 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + Y + ++ L NP K +A ++ H +V
Sbjct: 356 IAEAKCREIRVSMDDDLRMRYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T ER ++ F+ + ++ ++ VSKVA+ S DLP+AN
Sbjct: 414 GQYINQLEEISKAFKIPLITGKTPLGERQELYDAFR-SGRIKSLVVSKVANFSIDLPDAN 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K E+ A FY+L+S+DT E + + RQ FL
Sbjct: 473 IAIQVSGTFGSRQEEAQRLGRILRPK----GEDNTAVFYSLISRDTNEERFGQNRQLFLT 528
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 529 EQGYEYEIYT 538
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QWK++ + +S I ++ E K+ KP
Sbjct: 203 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKEIKP-- 260
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 261 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 297
>gi|302560004|ref|ZP_07312346.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
gi|302477622|gb|EFL40715.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
Length = 547
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + ++ K R T+ ++ G + +V
Sbjct: 357 IAPADCVEVRVSLTESERLAYATAEQEEKYRFCSTTATKQRVTEAIVKRFA--GQQILVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G TS ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRFL
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHKAHFYSVVARDTIDQDFAAHRQRFLA 529
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 530 EQGYAYRIM 538
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEEEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 264 --VTIATYQVLTTKRKGIYP---HLELFDSRDWGLILYDE 298
>gi|257057395|ref|YP_003135227.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256587267|gb|ACU98400.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 548
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + ++ H G+ T+V
Sbjct: 358 IAPAECVEVRVTLTDAERLAYATADSEERYRLASTARTKNKVISSIVDKHA--GEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P + G T ER + F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGAELDAPVVQGSTRNKEREALFDAFRRG-EIDKLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K ++ A FY++V++DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----SDGRQAHFYSVVARDTVDTEYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYHIV 539
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 207 AGKTLVGAAAMAQAQATTLILVTNTVAGRQWKRELVERTSLTEDEIGEYSGEKKEIRP-- 264
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 --VTIATYQVITRRSKGEY---KHLELFDSRDWGLIIYDE 299
>gi|443626543|ref|ZP_21110961.1| putative ATP-dependent DNA helicase [Streptomyces viridochromogenes
Tue57]
gi|443339950|gb|ELS54174.1| putative ATP-dependent DNA helicase [Streptomyces viridochromogenes
Tue57]
Length = 548
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ L+ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCATTDTKRKVTEALV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L +N P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K ++ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----SDGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIV 538
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|418757586|ref|ZP_13313773.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384115363|gb|EIE01621.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
Length = 564
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCKEIRVSMEDDLRMRYSIADDREKFRLASENPEKLKAIGMIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T ER ++ F+ + ++ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKTFKIPLITGKTPLGERQELYDAFR-SGRIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K E+ A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GEDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QWK++ + +S I ++ E K+ KP
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKEIKP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|118616163|ref|YP_904495.1| DNA helicase Ercc3 [Mycobacterium ulcerans Agy99]
gi|118568273|gb|ABL03024.1| DNA helicase Ercc3 [Mycobacterium ulcerans Agy99]
Length = 542
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H G++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMAYATAEPEERYRLCSTVHTKIAVVKSILQRHP--GEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 409 GAYLDQLEELGTELDAPVIQGATKTREREALFDAFRRG-EIATLVVSKVANFSIDLPEAS 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGRAMFYSVVARDSLDSEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAQATTLILVTNIVAARQWKRELVARTSLTEEEIGEYSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRSKGEY---RHLELFDSRDWGLIIYDE 292
>gi|336120274|ref|YP_004575054.1| ATP-dependent DNA helicase [Microlunatus phosphovorus NM-1]
gi|334688066|dbj|BAK37651.1| putative ATP-dependent DNA helicase [Microlunatus phosphovorus
NM-1]
Length = 548
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 302 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGY 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S Y V + + L +K + L+A H RG +V
Sbjct: 361 IAPADCVEVRVTLSEPERMTYAVAEPDVKYRLASTAESKTQVVIDLVAKH--RGVPILVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A +++ P I G T+ +R ++ + F+ + +V+ + VSKVA+ S DLP A
Sbjct: 419 GQYVDQLEDLAARLDAPLITGETTVRQRERLYEAFR-SGEVDLLVVSKVANFSIDLPSAQ 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K +E A F +V++DT++ ++ RQRFL
Sbjct: 478 VAIQVSGAFGSRQEEAQRLGRLLRPK----SEGTTARFLAVVARDTVDADFAAHRQRFLA 533
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 534 EQGYAYTIM 542
>gi|297200523|ref|ZP_06917920.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
gi|197709647|gb|EDY53681.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
Length = 547
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ L+ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCATTATKRKVTEALV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-QGEISVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIV 538
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEEEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 264 --VTIATYQVLTTRRKGVY---PHLELFDSRDWGLILYDE 298
>gi|386845478|ref|YP_006263491.1| DNA excision repair protein ERCC-3 [Actinoplanes sp. SE50/110]
gi|359832982|gb|AEV81423.1| DNA excision repair protein ERCC-3 [Actinoplanes sp. SE50/110]
Length = 548
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 148/252 (58%), Gaps = 14/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV- 335
IA +C EV ++ + Y V +R K + L+A H + ++ +V
Sbjct: 358 IAPAECVEVRVTLTEQERMAYAVTDAEERYKAAATARTKLPVVKALVARHPQ--EQVLVI 415
Query: 336 --FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
F D + L Y ++ P + G TS ER ++ F+ + ++ T+ +SKV + S DLP
Sbjct: 416 GGFLDQLHTLGEY---LDAPIVEGSTSNKERERLFDAFR-SGELRTLVLSKVGNFSIDLP 471
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQR
Sbjct: 472 EAAVAIQVSGTFGSRQEEAQRLGRVLRPK----GDGRQAHFYSVVSRDTIDTEYAAHRQR 527
Query: 454 FLINQGYSYKVI 465
FL QGY+Y ++
Sbjct: 528 FLAEQGYAYTIV 539
>gi|295394515|ref|ZP_06804738.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972694|gb|EFG48546.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
ATCC 49030]
Length = 542
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + ++ LIGPK ++ W E++ G
Sbjct: 297 EVHLLPAPIFR-LTAGLQARRRLGLTATLVREDGREEEVFSLIGPKQFDVPWKEIEAAGH 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + R L K RAT++++ H + +V
Sbjct: 356 IATATCHEVRVKLDRDLRSTYASAEGENRYRLAASCEAKVRATKHIVKEHP--DAQLLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +N P + G T +SER ++ ++F+ N +V + VSKVA+ S DLP+A+
Sbjct: 414 GQYLDQLEELGEALNAPVLTGKTPESERERLYEDFR-NGEVRVLVVSKVANFSVDLPQAS 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K+ A+ A FYT+V+ +T++ +++ R+RFL
Sbjct: 473 VAIQVSGSFGSRQEEAQRLGRILRPKENALP----ATFYTIVTANTVDEDFAQHRRRFLT 528
Query: 457 NQGYSYKV 464
QGYSY +
Sbjct: 529 EQGYSYTI 536
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG V+ L+L + VS +QWK + ++ I ++ K +P
Sbjct: 205 AGKTVVGAATMSRVQTTTLILVTNSVSAKQWKAELLRRTSLTPEEIGEYSGNLKQIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K S+ ++ L + WG+++ D+
Sbjct: 263 --VTIATYQVLTTRRKGSY---LHLELLDARNWGLVIYDE 297
>gi|359689912|ref|ZP_09259913.1| ATP-dependent DNA helicase [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418749034|ref|ZP_13305326.1| type III restriction enzyme, res subunit [Leptospira licerasiae
str. MMD4847]
gi|404276103|gb|EJZ43417.1| type III restriction enzyme, res subunit [Leptospira licerasiae
str. MMD4847]
Length = 552
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 297 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + Y + ++ L NP K +A ++ H +V
Sbjct: 356 IAEAKCKEIRVSMEDDLRMRYSIADDREKFRLASENPEKLKAIGMIMKKHSE--SHLLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T ER ++ F+ + ++ ++ VSKVA+ S DLP+AN
Sbjct: 414 GQYINQLEEISKTFKIPLITGKTPLGERQELYDAFR-SGRIKSLVVSKVANFSIDLPDAN 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K E+ A FY+L+S+DT E + + RQ FL
Sbjct: 473 IAIQVSGTFGSRQEEAQRLGRILRPK----GEDNTAVFYSLISRDTNEERFGQNRQLFLT 528
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 529 EQGYEYEIYT 538
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QWK++ + +S I ++ E K+ KP
Sbjct: 203 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKEIKP-- 260
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 261 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 297
>gi|449124740|ref|ZP_21761059.1| hypothetical protein HMPREF9723_01103 [Treponema denticola OTK]
gi|449129740|ref|ZP_21765969.1| hypothetical protein HMPREF9724_00634 [Treponema denticola SP37]
gi|448943071|gb|EMB23965.1| hypothetical protein HMPREF9723_01103 [Treponema denticola OTK]
gi|448945230|gb|EMB26104.1| hypothetical protein HMPREF9724_00634 [Treponema denticola SP37]
Length = 572
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 153/251 (60%), Gaps = 10/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK ++ W +L+++G+
Sbjct: 327 EVHLLPAPVFR-ITAELQVIRRLGLTATLVREDGCEGDVFSLVGPKRFDVPWKDLEQKGW 385
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E+ ++P EY V T ++ + NP K + L+ H+ ++ ++
Sbjct: 386 IAKAYCTEIRVNIAPSKEIEYAVGTTREKHRIASENPAKLEIVKKLLTKHKE--NQILII 443
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ P I G + +ER + +F+ ++N + VSKVA+ + DLP+A+
Sbjct: 444 GQYLSQLETIAKEIRAPLITGKNTNAERELLYDSFR-KGEINVLVVSKVANFAIDLPDAS 502
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E ++ FY++V++ T+E ++ KRQ+FL
Sbjct: 503 VAIQVSGVFGSRQEEAQRLGRILRPK------ECDSHFYSIVTRQTIEEGFAEKRQKFLA 556
Query: 457 NQGYSYKVITK 467
QGY Y ++T+
Sbjct: 557 EQGYDYSILTE 567
>gi|427706036|ref|YP_007048413.1| type III restriction protein res subunit [Nostoc sp. PCC 7107]
gi|427358541|gb|AFY41263.1| type III restriction protein res subunit [Nostoc sp. PCC 7107]
Length = 556
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIGPK Y+ W EL+ GF
Sbjct: 313 EVHLLPAPVFR-ITAELQARRRLGLTATLIREDGREGDVFALIGPKRYDVPWRELEGGGF 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ E EY + + + NP K + + L+A G + ++
Sbjct: 372 IATASCTEIRVSQDKERQMEYALAPRRNQFRVAAENPRKVQVIKDLLARES--GHRILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + L+ A P I G T + ER ++ Q F+ K+ + +S+V + + DLP+A+
Sbjct: 430 GEFLSQLEAIAQVTQLPLITGKTPEKEREKLYQAFR-EGKLGGLVLSRVGNFAIDLPDAD 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+LIQ+S GSR++EAQRLGR+LR K ++ A FYTLVS T E ++R RQ FL
Sbjct: 489 ILIQVSGKYGSRQEEAQRLGRVLRPK----SDGRPAQFYTLVSLRTCEEDFARHRQLFLT 544
Query: 457 NQGYSYKV 464
QGYSY++
Sbjct: 545 EQGYSYQI 552
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+TA V++ LVL S SV QW+ + + + I ++ E K+
Sbjct: 219 AGKTIVGMTAIAAVQESTLVLSTSLTSVRQWRRELLDKTDLPEDAIAEYSGEVKNT---G 275
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I ++TY ++++ +R + + WG+++ D+
Sbjct: 276 PITLSTYQILTYRHQRDGDFPH-FDLFSARSWGLIIYDE 313
>gi|379706890|ref|YP_005262095.1| putative DNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374844389|emb|CCF61451.1| putative DNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 552
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + +R L K + ++A H + T+V
Sbjct: 360 IAPADCIEVRVTLTDAERMAYATAEPEERYKLCSTAHTKIAVVESILAKH--KDAPTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ ++ P I G T ER + ++F+ ++ + VSKVA+ S DLPEA+
Sbjct: 418 GAYLEQLEELGAALDAPVIQGSTKTKEREALFESFRRG-EIPVLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K+ + A FY++V++DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKQ----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QW+ + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMARAKATTLILVTNTVAGRQWRRELLARTSLTEDEIGEYSGERKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 301
>gi|302552290|ref|ZP_07304632.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
40736]
gi|302469908|gb|EFL33001.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
40736]
Length = 547
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y +T ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVSLTDAERLAYATAETEEKYRFCATTDTKRKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L + P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K ++ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----SDGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIV 538
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAQAKSTTLILVTNTVSARQWKHELVRRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|118361658|ref|XP_001014057.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89295824|gb|EAR93812.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 407
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 161/281 (57%), Gaps = 31/281 (11%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E A ++++ K+GLTAT RED+KI DL +IGPKLYEAN EL + +
Sbjct: 130 ETQYSAASTYKKIFEEFNFKLKIGLTATTYREDNKIYDLFHVIGPKLYEANISELIQDSY 189
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C F++ S+++ +V+ L HE R DK +VF
Sbjct: 190 LAKPYCVVF------RFWK-------SRKIQTFVL----------LNQVHESRKDKILVF 226
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
D + LK+Y+ KM P IYG E++ L F+ ++NT+F+S+V DT+ DLP AN
Sbjct: 227 CDQIPVLKYYSQKMGYPAIYGEVGLLEKLVWLDLFR-KGEINTLFLSRVGDTALDLPIAN 285
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQI GS++QE QRLGRI+R K+G EYNAFFYT+VS++T + + +RQ+ L+
Sbjct: 286 VCIQIGFQFGSKKQEVQRLGRIMRRKEGQKG-EYNAFFYTIVSKNTEQAQFYYRRQKSLM 344
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASE 497
+ G +++VI ++E+ G + + + L Q+++ AS+
Sbjct: 345 DLGINFEVI----DIDEQNGNKF--KYDPDILDQKIIRASD 379
>gi|398347412|ref|ZP_10532115.1| DNA or RNA helicase [Leptospira broomii str. 5399]
Length = 565
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 8/250 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+ + +
Sbjct: 309 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSW 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M + Y + ++ L NP K +A ++ H +V
Sbjct: 368 IAEAKCREIRVSMDDDLRMRYSIADDREKFRLASENPEKMKAIDLIMKKHSE--SHLLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T ER ++ F+ + ++ ++ VSKVA+ S DLP+AN
Sbjct: 426 GQYINQLEEISKYFKIPLITGKTPLGERQELYDAFR-SGRIKSLVVSKVANFSIDLPDAN 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K E+ A FY+L+S+DT E + + RQ FL
Sbjct: 485 IAIQVSGTFGSRQEEAQRLGRILRPK----GEDNTAVFYSLISRDTNEERFGQNRQLFLT 540
Query: 457 NQGYSYKVIT 466
QGY Y++ T
Sbjct: 541 EQGYEYEIYT 550
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QWK++ + +S I ++ E K+ KP
Sbjct: 215 AGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKEIKP-- 272
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++++H +K+ + + N WG+++ D+
Sbjct: 273 --ITIATYNILTHRKKKGGDFTHFHLFSANN-WGLIVYDE 309
>gi|381181009|ref|ZP_09889845.1| helicase domain protein [Treponema saccharophilum DSM 2985]
gi|380767014|gb|EIC01017.1| helicase domain protein [Treponema saccharophilum DSM 2985]
Length = 614
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V+ +Q+ ++GLTATL+RED + L+GPK Y+ W +L+ GF
Sbjct: 353 EVHMLPAPVFR-VVAEIQAVRRIGLTATLVREDGCEGHVFSLVGPKRYDVPWKDLEHSGF 411
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV P+ EY V K+ + NP K + ++ DK +V
Sbjct: 412 IATAECIEVKVPLPESMEIEYAVADQRKKHKIASENPAKESFVRRIV--ESSPDDKILVI 469
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G T SER +I + F+ +++ + VSKVA+ + DLP+A+
Sbjct: 470 GQYIEQLQSIAQMLGCPIITGRTPNSERDEIYRKFRTG-EISVLVVSKVANFAIDLPDAS 528
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E + F+TL++++T E + RQ+FL
Sbjct: 529 VAIQVSGTFGSRQEEAQRLGRILRPK------ERKSRFFTLITRNTTEEDFGANRQKFLA 582
Query: 457 NQGYSYKV 464
QGYSY++
Sbjct: 583 EQGYSYRI 590
>gi|329922713|ref|ZP_08278265.1| helicase C-terminal domain protein [Paenibacillus sp. HGF5]
gi|328942055|gb|EGG38338.1| helicase C-terminal domain protein [Paenibacillus sp. HGF5]
Length = 595
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 149/252 (59%), Gaps = 14/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I Q+ +LGLTATL+RED + +D+ LIGPK YE W L+ +G+
Sbjct: 324 EVHLLPAPVFRATADI-QATRRLGLTATLVREDGRESDVFSLIGPKRYEMPWKRLEAQGW 382
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVM---NPNKYRATQYLIAYHERRGDKT 333
IA V C E+ P+ P+ RE C+T+ + Y + NP+K + L+ H + +T
Sbjct: 383 IASVTCTEIKVPL-PDEIRE--ACETAGKREQYRLAAENPSKLDVIRQLVDVH--KDAQT 437
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ + L + ++ P I G +Q +R + F+ V + VSKVA+ + DLP
Sbjct: 438 LIIGQYLDQLHAISRELQAPLITGQMTQDQRNEWYNAFR-EGNVRVLVVSKVANFAVDLP 496
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V I++S GSR++EAQRLGR+LR K G E +FY LV++D+ E ++ +RQ
Sbjct: 497 DASVAIEVSGSYGSRQEEAQRLGRLLRPKTG----ENRGYFYALVTEDSREEIFAIRRQL 552
Query: 454 FLINQGYSYKVI 465
FLI QGY Y I
Sbjct: 553 FLIEQGYEYHAI 564
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A ++ L+L ++ SV QW + +T I ++ + K +P
Sbjct: 230 AGKTVIGIAAMRELQCETLILTSNTTSVRQWIAELMQKTTLSVDEIGEYSGQRKQVRP-- 287
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY +++H Q + E Q M+ + WG+++ D+
Sbjct: 288 --VTVATYHILTHRQGKG-EEQQHMKLFNERRWGLIIYDE 324
>gi|17232195|ref|NP_488743.1| DNA repair helicase [Nostoc sp. PCC 7120]
gi|17133840|dbj|BAB76402.1| DNA repair helicase [Nostoc sp. PCC 7120]
Length = 563
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIGPK Y+ W EL+ GF
Sbjct: 313 EVHLLPAPVFR-ITAELQARRRLGLTATLIREDGREGDVFALIGPKRYDVPWRELETEGF 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ E Y + + + NP+K + + L+ + G + ++
Sbjct: 372 IATASCTEIRVSQDAERQMTYALAPRRNQFRVAAENPHKVQVVKELL--EKESGHRILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + L+ A P I G T + ER Q+ Q F+ K+ + +S+V + + DLP+A+
Sbjct: 430 GEFLAQLETLAKVTGLPLITGKTPEKEREQLYQAFR-EGKLGGLVLSRVGNFAIDLPDAD 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+LIQ+S GSR++EAQRLGR+LR K ++ A FYTLVS T E ++R RQ FL
Sbjct: 489 ILIQVSGKYGSRQEEAQRLGRVLRPK----SDGRPAQFYTLVSLRTCEEDFARHRQLFLT 544
Query: 457 NQGYSYKV 464
QGYSY +
Sbjct: 545 EQGYSYNI 552
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG++A V++ L+L S SV QW+ + + + I ++ E K+
Sbjct: 219 AGKTIVGMSAIAAVQENTLILSTSLTSVRQWRRELLDKTDLPEEAIAEYSGEVKNT---G 275
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I ++TY ++++ R + + WG+++ D+
Sbjct: 276 PITLSTYQILTYRPNREDDFPH-FDLFSARSWGLIIYDE 313
>gi|395769274|ref|ZP_10449789.1| ATP-dependent DNA helicase [Streptomyces acidiscabies 84-104]
Length = 548
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 149/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEAEEKYRFCATTATKRKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIV 538
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAEAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG++L D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLILYDE 298
>gi|385652085|ref|ZP_10046638.1| DNA repair helicase [Leucobacter chromiiresistens JG 31]
Length = 554
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 142/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +GF
Sbjct: 309 EVHLLPAPVFK-LTADLQARRRLGLTATLVREDGREGDVFSLIGPKRYDAAWKDIEAQGF 367
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV EY V + R + K + +I H G+ +V
Sbjct: 368 IAPAACFEVRVDFGEAERMEYAVAEDQDRYRIASSALIKQPVARRIIDRHP--GESVLVI 425
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G T ER ++ Q F+ + + VSKVA+ S DLP+A+
Sbjct: 426 GQYIDQLESMAEALGAPLITGQTPVDERERLFQAFRSGAE-KILVVSKVANFSVDLPDAS 484
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGR+LR K A FYTL+++DT++ +++ RQRFL
Sbjct: 485 VAIQISGSFGSRQEEAQRLGRLLRPKSNGA----TASFYTLITRDTVDQDFAQNRQRFLA 540
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 541 EQGYAYTIL 549
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG + V + L+L + VS QW+ + ++ + I ++ + K+ KP
Sbjct: 217 AGKTIVGAASMAAVGAKTLILVTNAVSARQWRDELLRRTSLTEDEIGEYSGQVKEVKP-- 274
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L ++WG+++ D+
Sbjct: 275 --VTIATYQILTSRRKGEY---AHLSLLDAEDWGVIVYDE 309
>gi|338706347|ref|YP_004673115.1| putative DNA repair helicase [Treponema paraluiscuniculi Cuniculi
A]
gi|335344408|gb|AEH40324.1| probable DNA repair helicase [Treponema paraluiscuniculi Cuniculi
A]
Length = 606
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 142/249 (57%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK Y+ W +L+ RG+
Sbjct: 361 EVHLLPAPLFR-ITAELQVVRRLGLTATLVREDGCAQDVFSLVGPKRYDVPWKDLEARGW 419
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IARV+C EV M +Y+ R L N K Q L+ H G T++
Sbjct: 420 IARVRCVEVRVTMDQSLQYQYMTAPVRLRHRLASENEAKVAVVQRLLRAHA--GAPTLII 477
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L H A + P + G + + R I Q F+ + + VSKVA+ + DLP+A+
Sbjct: 478 GQYVQQLLHLAHVLQVPLVSGRQTYAAREAIYQRFR-EGTLQVLVVSKVANCALDLPDAS 536
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K +A FY+L+++ T+E + +RQRFL+
Sbjct: 537 VAIQVSGTFGSRQEEAQRLGRLLRPKI------CDAHFYSLITEQTVEEDCALRRQRFLV 590
Query: 457 NQGYSYKVI 465
QGY+Y+ +
Sbjct: 591 EQGYTYETL 599
>gi|332297020|ref|YP_004438942.1| helicase domain-containing protein [Treponema brennaborense DSM
12168]
gi|332180123|gb|AEE15811.1| helicase domain-containing protein [Treponema brennaborense DSM
12168]
Length = 638
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 145/249 (58%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ ++GLTATL+RED + L+GPK Y+ W EL+ G+
Sbjct: 373 EVHMLPAPVFR-VAAELQAVRRVGLTATLVREDGCEGHVFSLVGPKRYDVPWKELEHSGW 431
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV + + EY V + K+ + NP K Q LI DK ++
Sbjct: 432 IATAECVEVRIDLPADTEIEYAVADSRKKHRIASENPAKTPVVQELIKRFPE--DKILII 489
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A +N P I G T +ER +I +F+ N + + VSKVA+ + DLP+A+
Sbjct: 490 GQYLDQLAELARLLNAPVITGKTPTAERDRIYADFR-NGVIQVLVVSKVANFAIDLPDAS 548
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K E + F+TL++++T+E + RQ+FL
Sbjct: 549 MAIQVSGTFGSRQEEAQRLGRILRPK------ERTSRFFTLITRNTVEEEFGSNRQKFLA 602
Query: 457 NQGYSYKVI 465
QGYSY++I
Sbjct: 603 EQGYSYRII 611
>gi|373487888|ref|ZP_09578554.1| helicase domain protein [Holophaga foetida DSM 6591]
gi|372007662|gb|EHP08291.1| helicase domain protein [Holophaga foetida DSM 6591]
Length = 580
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 9/251 (3%)
Query: 215 IH-EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK 273
IH EVH +PA +FR V + Q+ +LGLTATL+RED K D+ LIGPK + W L+K
Sbjct: 313 IHDEVHMLPAPIFRAVAEL-QAKRRLGLTATLVREDGKEEDVFSLIGPKRVDVPWKVLEK 371
Query: 274 RGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GFIA C E+ P+ + EY V R + N K L+A H D
Sbjct: 372 DGFIATAHCLEIRVPLPTDERMEYAVADQRARFRIASENSLKLTVVDELLAGHPE--DSI 429
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ + L+ ++ P + G T + ER ++ + F+ ++ + VSKVA+ + DLP
Sbjct: 430 LIIGQYLEQLRILGKRLQVPVLTGQTPEREREELFRQFRAG-ELRILIVSKVANFAIDLP 488
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A+V IQ+S GSR++EAQRLGR+LR K ++FY+L+S+DT E ++R RQ
Sbjct: 489 DASVAIQVSGTFGSRQEEAQRLGRVLRPK----GNRNVSYFYSLISRDTTEQEFARNRQL 544
Query: 454 FLINQGYSYKV 464
FL QGY Y +
Sbjct: 545 FLTEQGYRYLI 555
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+++G+ ++ LVL + +V+QWK + +T + I +T + K+ +P
Sbjct: 221 GAGKTVIGIACMARLQTHTLVLTTNVTAVKQWKQELLDKTTLTEDQIGLYTGDTKEIRP- 279
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY ++++ + + + + + WG+++ D+
Sbjct: 280 ---VTIATYQILTYRRTKGGPFEH-FKLFEAANWGLVIHDE 316
>gi|403508838|ref|YP_006640476.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402798567|gb|AFR05977.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 545
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 145/259 (55%), Gaps = 11/259 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 294 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDMENQGW 352
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + R + K + ++ H ++ +V
Sbjct: 353 IAPADCVEVRVDLTESERLAYATAEPEDRYRFCASSETKTSVVREIVERHSE--EQVLVI 410
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ + ++ T+ VSKVA+ S DLPEA
Sbjct: 411 GSYIDQLDELGERLGAPVIKGETRNKERERLFDAFR-SGELRTLVVSKVANFSIDLPEAG 469
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY +V++DT++ Y+ RQRFL
Sbjct: 470 VAVQVSGSFGSRQEEAQRLGRVLRPK----ADGRTARFYAVVARDTLDQDYAAHRQRFLA 525
Query: 457 NQGYSYKVITK---LAGME 472
QGY+Y++ LAG E
Sbjct: 526 EQGYAYRITDAADLLAGDE 544
>gi|383826946|ref|ZP_09982061.1| hypothetical protein MXEN_18794 [Mycobacterium xenopi RIVM700367]
gi|383331524|gb|EID10020.1| hypothetical protein MXEN_18794 [Mycobacterium xenopi RIVM700367]
Length = 543
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 293 EVHLLPAPVFR-LTADLQSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 351
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R + +K + +++ H G+ T+V
Sbjct: 352 IAPAECVEVRVTLTDNERMRYATAEPEERYRVCSTAHSKIAVVKSILSRHP--GEPTLVI 409
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P I G T +ER + F+ +V T+ VSKVA+ + DLPEA
Sbjct: 410 GAYLDQLEELGALLGAPVIQGSTKTAEREALFDAFRRG-EVTTLVVSKVANFAIDLPEAA 468
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K G A FY++V++D+ + Y+ RQRFL
Sbjct: 469 VAVQVSGTFGSRQEEAQRLGRLLRPKAGG----GGAVFYSVVARDSQDTEYAAHRQRFLA 524
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 525 EQGYGYVI 532
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + V+ QWK + ++ I ++ E K+ +P
Sbjct: 199 GAGKTLVGAAAMAKASATTLILVTNTVAARQWKRELVARTSLTADEIGEYSGERKEIRP- 257
Query: 96 GCGILVTTYSMISHTQKRSWEAD-QTMQWLQNQEWGIMLLDD 136
+ ++TY +++ +R+ + D + ++ +++WG+++ D+
Sbjct: 258 ---VTISTYQLMT---RRNRKGDYRHLELFDSRDWGLIIYDE 293
>gi|15639371|ref|NP_218820.1| DNA repair helicase, [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025613|ref|YP_001933385.1| DNA repair helicase [Treponema pallidum subsp. pallidum SS14]
gi|378972887|ref|YP_005221491.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973954|ref|YP_005222560.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378975016|ref|YP_005223624.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981863|ref|YP_005230168.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421904|ref|YP_005631263.1| DNA or RNA helicase of superfamily II [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502258|ref|YP_006869702.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|3322660|gb|AAC65366.1| DNA repair helicase, putative [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018188|gb|ACD70806.1| possible DNA repair helicase [Treponema pallidum subsp. pallidum
SS14]
gi|291059770|gb|ADD72505.1| DNA or RNA helicase of superfamily II [Treponema pallidum subsp.
pallidum str. Chicago]
gi|374677210|gb|AEZ57503.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678280|gb|AEZ58572.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679349|gb|AEZ59640.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680414|gb|AEZ60704.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
DAL-1]
gi|408475621|gb|AFU66386.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 606
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 142/249 (57%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK Y+ W +L+ RG+
Sbjct: 361 EVHLLPAPLFR-ITAELQVVRRLGLTATLVREDGCAQDVFSLVGPKRYDVPWKDLEARGW 419
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IARV+C EV M +Y+ R L N K Q L+ H G T++
Sbjct: 420 IARVRCVEVRVTMDRSLQYQYMTAPVRLRHRLASENEAKVAVVQRLLRAHA--GAPTLII 477
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L H A + P + G + + R I Q F+ + + VSKVA+ + DLP+A+
Sbjct: 478 GQYVQQLLHLAHVLQVPLVSGRQTYAAREAIYQRFR-EGTLQVLVVSKVANCALDLPDAS 536
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K +A FY+LV++ T+E + +RQRFL+
Sbjct: 537 VAIQVSGTFGSRQEEAQRLGRLLRPKIC------DAHFYSLVTEQTVEEDCALRRQRFLV 590
Query: 457 NQGYSYKVI 465
QGY+Y+ +
Sbjct: 591 EQGYTYETL 599
>gi|15840274|ref|NP_335311.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
gi|13880434|gb|AAK45125.1| ATP-dependent DNA helicase, putative [Mycobacterium tuberculosis
CDC1551]
Length = 542
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ + T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EXATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|337748137|ref|YP_004642299.1| ATP-dependent helicase [Paenibacillus mucilaginosus KNP414]
gi|379723001|ref|YP_005315132.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus 3016]
gi|336299326|gb|AEI42429.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus
KNP414]
gi|378571673|gb|AFC31983.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus 3016]
Length = 563
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED D+ L+GPK YE W +L+ +G+
Sbjct: 312 EVHLLPAPVFR-VTADIQATRRLGLTATLIREDGMEQDVFSLVGPKRYEMPWKDLESQGW 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA V+C E+ P+ Y +++ + +NP K L+ H +G++ ++
Sbjct: 371 IAAVECVELRVPLPEREMEAYRSASPREQMRMASINPAKLDLVCRLVEQH--KGEQILII 428
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G +R ++ F+ + + VSKVA+ + DLP+A
Sbjct: 429 GQYLEQLHDLGSRTGIPVITGSMPSEKREELYDAFR-KSAIQELIVSKVANFAVDLPDAA 487
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K G A+FYT++S+DT E ++ RQ FLI
Sbjct: 488 VAIQVSGSYGSRQEEAQRLGRILRPKAG----NNKAYFYTVISEDTREQDFALNRQLFLI 543
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 544 EQGYRYRM 551
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A + L+L ++ SV QWK + + + M+ +T K+ +P
Sbjct: 218 AGKTVIGIAAMGKLSCATLILTSNSTSVRQWKREILDKTDVTEDMVGEYTGTQKEVRP-- 275
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++H + + E M+ ++WG+++ D+
Sbjct: 276 --ITIATYQILTHRKSKD-EPFTHMELFNKRDWGLIVYDE 312
>gi|290959478|ref|YP_003490660.1| DNA helicase [Streptomyces scabiei 87.22]
gi|260649004|emb|CBG72118.1| putative DNA helicase [Streptomyces scabiei 87.22]
Length = 546
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 148/251 (58%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 297 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + + ++ RR G + +
Sbjct: 356 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCSTTATKRKVAEAIV----RRFAGQQIL 411
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ F+ ++N + VSKVA+ S DLPE
Sbjct: 412 VIGQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFR-QGEINVLVVSKVANFSIDLPE 470
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 471 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 526
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 527 LAEQGYAYRIM 537
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 AGKTLVGAGAMAQAKSTTLILVTNTVSARQWKHELIKRTSLTEEEIGEYSGTRKEIRP-- 262
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 263 --VTIATYQVLTTRRKGVYP---HLELFDSRDWGLVVYDE 297
>gi|118468039|ref|YP_889939.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
smegmatis str. MC2 155]
gi|118169326|gb|ABK70222.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
smegmatis str. MC2 155]
Length = 585
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 335 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 393
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H + T+V
Sbjct: 394 IAPAECIEVRVTMTDNERMLYATSEPDERYKLCSTVHTKIAVVRSILERHP--NEPTLVI 451
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 452 GAYLDQLEELGQELDAPVIQGSTKNAEREALFDAFRRG-EIRTLVVSKVANFSIDLPEAS 510
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 511 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 566
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 567 EQGYGYII 574
>gi|386725786|ref|YP_006192112.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus K02]
gi|384092911|gb|AFH64347.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus K02]
Length = 563
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED D+ L+GPK YE W +L+ +G+
Sbjct: 312 EVHLLPAPVFR-VTADIQATRRLGLTATLIREDGMEQDVFSLVGPKRYEMPWKDLESQGW 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA V+C E+ P+ Y +++ + +NP K L+ H +G++ ++
Sbjct: 371 IAAVECVELRVPLPEREMEAYRSASPREQMRMASINPAKLDLVCRLVEQH--KGEQILII 428
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G +R ++ F+ + + VSKVA+ + DLP+A
Sbjct: 429 GQYLEQLHDLGSRTGIPVITGSMPSEKREELYDAFR-KSAIQELIVSKVANFAVDLPDAA 487
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K G A+FYT++S+DT E ++ RQ FLI
Sbjct: 488 VAIQVSGSYGSRQEEAQRLGRILRPKAG----NNKAYFYTVISEDTREQDFALNRQLFLI 543
Query: 457 NQGYSYKV 464
QGY Y++
Sbjct: 544 EQGYRYRM 551
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+++G+ A + L+L ++ SV QWK + + + M+ +T K+ +P
Sbjct: 218 AGKTVIGIAAMGKLSCATLILTSNSTSVRQWKREILDKTDVTEDMVGEYTGTQKEVRP-- 275
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++H + + E M+ ++WG+++ D+
Sbjct: 276 --ITIATYQILTHRKSKD-EPFTHMELFNKRDWGLIVYDE 312
>gi|403378912|ref|ZP_10920969.1| putative ATP-dependent helicase [Paenibacillus sp. JC66]
Length = 566
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 145/257 (56%), Gaps = 8/257 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED ++ LIGPK + W L+ G+
Sbjct: 314 EVHLLPAPIFR-VTAEIQATRRLGLTATLVREDGCEKEVYSLIGPKRIDVPWKSLEGDGY 372
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A V+C EV + PE +EY + N K+ Q L+ H G T++
Sbjct: 373 LATVECREVHVALDPEAKQEYERLSARHKTRAAAENKRKFAVVQALLQKHA--GMPTLLI 430
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A P+I G ER ++ + F+ +VN + VSKVA+ + DLP+A
Sbjct: 431 GQYLDQLRQLAELTGAPFISGQMPHEEREELYKQFR-EGRVNPLVVSKVANFAIDLPDAA 489
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K GA A FY++VS +T E ++ RQ FL+
Sbjct: 490 VAIQISGSFGSRQEEAQRLGRILRPKAGA----NEAIFYSIVSANTKEQEFALNRQLFLV 545
Query: 457 NQGYSYKVITKLAGMEE 473
QGY Y+++ + ++E
Sbjct: 546 EQGYKYQLLDEQEVLQE 562
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+++G+ A C ++ L+L + SV+QWK + + + I + + K+ +P
Sbjct: 219 GAGKTVIGIGAMCRLQCATLILTPNVSSVKQWKRELLNITDLPEEWIGEYDGDRKEVRP- 277
Query: 96 GCGILVTTYSMISHTQKRSWEAD-QTMQWLQNQEWGIMLLDD 136
+ + TY +++H ++S +A + M ++WG+++ D+
Sbjct: 278 ---VTIATYQILTH--RKSKDAPFKHMHLFNKRDWGLIIYDE 314
>gi|399989940|ref|YP_006570290.1| type III restriction enzyme, res subunit [Mycobacterium smegmatis
str. MC2 155]
gi|441215685|ref|ZP_20976615.1| DNA helicase Ercc3 [Mycobacterium smegmatis MKD8]
gi|399234502|gb|AFP41995.1| Type III restriction enzyme, res subunit [Mycobacterium smegmatis
str. MC2 155]
gi|440624767|gb|ELQ86626.1| DNA helicase Ercc3 [Mycobacterium smegmatis MKD8]
Length = 549
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R L K + ++ H + T+V
Sbjct: 358 IAPAECIEVRVTMTDNERMLYATSEPDERYKLCSTVHTKIAVVRSILERHP--NEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P I G T +ER + F+ ++ T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGQELDAPVIQGSTKNAEREALFDAFRRG-EIRTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+D+++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGGGAVFYSVVSRDSLDAEYAAHRQRFLA 530
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 531 EQGYGYII 538
>gi|284033810|ref|YP_003383741.1| helicase domain-containing protein [Kribbella flavida DSM 17836]
gi|283813103|gb|ADB34942.1| helicase domain protein [Kribbella flavida DSM 17836]
Length = 546
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ ++GLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QTRRRIGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + R L P K R + + +H +G+ +V
Sbjct: 358 IAPADCVEVRVDLEQTERFVYATAEPEDRYRLAASTPAKSRLVRRIAEHH--KGEPMLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T+ ER ++ F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GQYIDQLDELGERLECPVIKGETTVKERQRLFNAFRTG-EIDRLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ ++ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRVLRPKN----DGRTARFYSIVARDTVDAEFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYTIV 539
>gi|384106694|ref|ZP_10007601.1| DNA repair helicase [Rhodococcus imtechensis RKJ300]
gi|383834030|gb|EID73480.1| DNA repair helicase [Rhodococcus imtechensis RKJ300]
Length = 559
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 308 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK-TIV 335
IA C EV ++ Y V + +R L K + ++ ER D T++
Sbjct: 367 IAPADCVEVRVTLTDAERMSYAVAEPDERYKLCSTAHTKIAVVKSIL---ERHTDAPTLI 423
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L +N P I G T ER ++ F+ ++ + VSKVA+ S DLPEA
Sbjct: 424 IGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQKLVVSKVANFSIDLPEA 482
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 483 SVAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFL 538
Query: 456 INQGYSYKV 464
QGY+Y++
Sbjct: 539 AEQGYAYRI 547
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 215 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP- 273
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 274 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 308
>gi|452959547|gb|EME64884.1| DNA repair helicase [Rhodococcus ruber BKS 20-38]
Length = 552
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y V + +R L K + ++ H R T++
Sbjct: 360 IAPAECVEVRVTLTDAERMAYAVAEPEERYKLCSTAHTKIAVVKSILDRH--RDSPTLII 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER ++ F+ ++ + VSKVA+ S DLPEA+
Sbjct: 418 GAYLDQLDELGEALDAPVIKGSTRNKEREELFDRFRAG-ELKVLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 209 AGKTMVGAAAMAKAGATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGEKKEIRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+M+ D+
Sbjct: 267 --VTIATYQVITRKSKGEY---RNLELFDSRDWGLMIYDE 301
>gi|456385575|gb|EMF51143.1| DNA helicase [Streptomyces bottropensis ATCC 25435]
Length = 547
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 148/251 (58%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + + ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCSTTATKRKVAEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ F+ ++N + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFRRG-EINVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHKAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIM 538
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 205 GAGKTLVGAGSMAQAKATTLILVTNTVSARQWKHELVKRTSLTEEEIGEYSGTRKEIRP- 263
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 ---VTIATYQVLTTRRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|331699464|ref|YP_004335703.1| type III restriction protein res subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326954153|gb|AEA27850.1| type III restriction protein res subunit [Pseudonocardia
dioxanivorans CB1190]
Length = 553
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 140/249 (56%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y +R + K + ++ H + T+V
Sbjct: 358 IAPAECIEVRVTLTDAERLGYATADAEERYRMASTARTKLPVVKAILDRHP--DEPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L +N P I G T ER + F+ +V + VSKVA+ S DLPEA
Sbjct: 416 GAYLDQLDDLGGALNCPVIQGSTKNKEREALFDAFRAG-EVKRLVVSKVANFSIDLPEAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAIQVSGTFGSRQEEAQRLGRLLRPK----GDGRQAHFYSVVSRDTLDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A + L+L + VS QWK + ++ + I ++ E K+ +P
Sbjct: 206 GAGKTLVGAAAMAQAKATTLILVTNTVSGRQWKRELIARTSLTEDEIGEYSGERKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 265 ---VTIATYQVITRRTKGEY---RHLELFDSRDWGLVIYDE 299
>gi|455648330|gb|EMF27207.1| ATP-dependent DNA helicase [Streptomyces gancidicus BKS 13-15]
Length = 547
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 150/251 (59%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDSERLAYATAEQEEKYRFCSTTATKQKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L ++ P I G TS ++R ++ + F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFR-QGELSVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V +Q+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAVQVSGTFGSRQEEAQRLGRVLRPK----ADGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIV 538
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMAQAKSTTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTKRKGVYP---HLELFDSRDWGLIVYDE 298
>gi|425734424|ref|ZP_18852743.1| DNA helicase, superfamily II [Brevibacterium casei S18]
gi|425481691|gb|EKU48850.1| DNA helicase, superfamily II [Brevibacterium casei S18]
Length = 544
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 145/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR ++ Q+ +LGLTATL+RED + ++ LIGPK YE W EL++ GF
Sbjct: 302 EVHLLPAPIFRLTASL-QARRRLGLTATLVREDGREDEVFSLIGPKQYEVPWKELERLGF 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y R L + K + L+A H + +V
Sbjct: 361 IATAACHEVRVRLDGGTRTAYARADGEDRYRLAATSDAKLPIVRSLVAEHPDA--QILVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P + G T +S+R Q+ ++F+ + + + VSKVA+ S DLP A+
Sbjct: 419 GQYLDQLEEIGAELDAPVLTGQTPESQRQQLFRDFR-SGAIRVLVVSKVANFSVDLPAAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K+ A +A FYT+V+ DT++ ++ +R+RFL
Sbjct: 478 VAIQVSGAFGSRQEEAQRLGRILRPKEDA----GSATFYTVVAADTVDEHFAAQRRRFLT 533
Query: 457 NQGYSYKV 464
QGYSY +
Sbjct: 534 EQGYSYDI 541
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VGV V+ L+L + VS +QWK + +T + I ++ K+ +P
Sbjct: 210 AGKTVVGVATMSRVQTTTLILVTNSVSAKQWKDEILARTTLTEDEIGEYSGSVKEIRP-- 267
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ +K S+ ++ L ++WG+++ D+
Sbjct: 268 --ITIATYQVLTTRRKGSY---LHLELLDAKDWGLVIYDE 302
>gi|145479837|ref|XP_001425941.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393013|emb|CAK58543.1| unnamed protein product [Paramecium tetraurelia]
Length = 645
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 155/267 (58%), Gaps = 22/267 (8%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+ ++ ++++ K+GLTAT R+D+KI ++ + +GPKL+E+ ++L++
Sbjct: 341 MDEVHGLPAEQINAEISKLKANMKIGLTATPYRQDNKIKEIFYKVGPKLHESMIVDLKQM 400
Query: 275 GFIARVQCAEVWCPMSPEF---YREY------LVCKTSKRLLLYVMNPNKYRATQYLIAY 325
G+++++ C +V+ M + Y EY V T LY MNP K+ Q LI
Sbjct: 401 GYVSKIYCIQVYVGMQDLYKQKYEEYRRVNNQFVTNT-----LYQMNPKKFEVLQSLINI 455
Query: 326 HERRGDKTIVFSDNVF------ALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNT 379
H R DK +VF + V L+ +A N P I Q+ER I + ++ K++
Sbjct: 456 HRTRKDKILVFCEKVNKLADTGTLEKFAKLNNCPIISQKVEQTERSAIYKLYQ-EDKLDV 514
Query: 380 IFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS 439
I ++AD DLP ANV IQIS + S RQE QR+GRI R K+ I EY+ FFY++V+
Sbjct: 515 IIFGQIADQGLDLPSANVGIQISFNFKSVRQEFQRMGRIQRKKENQIG-EYDCFFYSIVT 573
Query: 440 QDTMEMSYSRKRQRFLINQGYSYKVIT 466
+ T E+ +RQ +INQGY Y++I+
Sbjct: 574 KGTREVEIQFERQIAVINQGYPYEIIS 600
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L+G+ ++++ L++C+ V QW+ F ++ D + + ++ PM
Sbjct: 247 AGKTLLGINVALKIKRKTLIICDQVNDVYQWQKSFIKFTEMDKNNLAIILRTQQEVPMAV 306
Query: 98 G-----ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVE 147
I++T MIS +K ++ + EW ++++D+ G+P A + N E
Sbjct: 307 LGREHIIVITNKDMISSNRK-------DIKHVTTLEWPLLIMDEVHGLP-AEQINAE 355
>gi|114777697|ref|ZP_01452657.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114551913|gb|EAU54447.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 554
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 142/249 (57%), Gaps = 11/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V + +Q+ +LGLTATL+RED D+ LIGPK ++ W EL++ G
Sbjct: 311 EVHMLPAPVFRAV-SEIQARRRLGLTATLIREDGLERDVFSLIGPKRFDLPWRELEQSGH 369
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLL-LYVMNPNKYRATQYLIAYHERRGDKTIV 335
IA+ C E+ PMS + + +++ + N K R LI H +G +V
Sbjct: 370 IAKAHCVEIRVPMSQHDHMAHATADDARKAYRIAAENSIKDRVATALIKKHADQG--ILV 427
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L+ A + P I G S ER ++ F+ ++ + VSKVA+ + DLP+A
Sbjct: 428 IGQYIKQLERIAAHLGAPLISGRMSSPERERLYAAFRAG-ELRLLVVSKVANYAIDLPDA 486
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ IQIS GSR++EAQRLGRILR + G AFFYTLVS + E+ ++ RQRFL
Sbjct: 487 SIAIQISGAFGSRQEEAQRLGRILRPQGGP------AFFYTLVSDHSEELKFAVNRQRFL 540
Query: 456 INQGYSYKV 464
QGY Y +
Sbjct: 541 AEQGYDYLI 549
>gi|297563115|ref|YP_003682089.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
gi|296847563|gb|ADH69583.1| helicase domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 548
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 139/248 (56%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 297 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDMENQGW 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S Y + R + K + ++ H ++ +V
Sbjct: 356 IAPADCVEVRVDLSEAERLAYATAEPEDRYRFCASSETKTSVVREIVERHP--DEQVLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + P I G T ER ++ F+ + + T+ VSKVA+ S DLPEA
Sbjct: 414 GSYIDQLDELGASLGAPVIKGETRNKERERLFDAFR-SGDLRTLVVSKVANFSIDLPEAG 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY +V++DT++ Y+ RQRFL
Sbjct: 473 VAVQVSGSFGSRQEEAQRLGRVLRPK----ADGRAARFYAVVARDTLDQDYAAHRQRFLA 528
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 529 EQGYAYRI 536
>gi|256825951|ref|YP_003149911.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256689344|gb|ACV07146.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
Length = 550
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGP+ Y A W +++ +G+
Sbjct: 297 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGRENEVFSLIGPQRYNAPWKDIEAQGW 355
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + +R L K ++ +H G+ T+V
Sbjct: 356 IAPADCVEVRTTLPESERMAYATAEADQRYRLAACADVKLPVLDRIVEHHA--GEATLVI 413
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +++ I G T Q ER ++ + F+ + ++ + VSKVA+ S DLPEA+
Sbjct: 414 GQYLDQLEEIAGRLDCDIITGETPQKERGRLFEAFR-SGEITRLVVSKVANFSIDLPEAS 472
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K ++ A FYT+V++DT++ ++ RQRFL
Sbjct: 473 VAIQVSGTFGSRQEEAQRLGRVLRPK----SDGRTAHFYTVVTRDTVDAEFAAHRQRFLA 528
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 529 EQGYAYRIL 537
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + +S QWK + +T + I ++ K+ +P
Sbjct: 204 GAGKTLVGAGAMARQETTTLILVTNTMSARQWKAELLRRTTLTEEEIGEYSGTVKEVRP- 262
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + + L ++WG+++ D+
Sbjct: 263 ---VTIATYQVLTTRRKGVY---THLDLLDARDWGLIIYDE 297
>gi|167966812|ref|ZP_02549089.1| DNA helicase ercc3 [Mycobacterium tuberculosis H37Ra]
Length = 542
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQVSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 524 EQGYGYII 531
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|427716121|ref|YP_007064115.1| type III restriction protein res subunit [Calothrix sp. PCC 7507]
gi|427348557|gb|AFY31281.1| type III restriction protein res subunit [Calothrix sp. PCC 7507]
Length = 556
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ +LGLTATL+RED + D+ LIGPK Y+ W EL+ GF
Sbjct: 313 EVHLLPAPVFR-ITAELQARRRLGLTATLIREDGREGDVFALIGPKRYDVPWRELEGEGF 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ E Y + + + NP K + + L+A + G + ++
Sbjct: 372 IATANCTEIRVSQDTERQMAYALASRRNQFRVASENPQKVKVVKDLLA--KESGHRILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + L+ A P I G T + ER ++ Q+F N K+ + +S+V + + DLP+A+
Sbjct: 430 GEFISQLETLAQVTGLPLITGKTPEREREKLYQDF-CNGKLAGLVLSRVGNFAIDLPDAD 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+LIQ+S GSR++EAQRLGRILR K + A FYT+VS T E ++R R FL
Sbjct: 489 ILIQVSGKYGSRQEEAQRLGRILRPK----FDGRPANFYTIVSLRTCEEDFARHRHLFLT 544
Query: 457 NQGYSYKV 464
QGYSY++
Sbjct: 545 EQGYSYQI 552
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++VG+ A +V++ L+L S SV QW+ + + + I ++ E K+
Sbjct: 219 AGKTIVGMAAIASVQESTLILSTSLTSVRQWRRELLDKTDLPEDAIAEYSGEVKNT---G 275
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY ++++ R + + + WG+++ D+
Sbjct: 276 PVTLSTYQILTYRSHRDKDFPH-FDLFRARAWGLIIYDE 313
>gi|445063350|ref|ZP_21375562.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30599]
gi|444505257|gb|ELV05807.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30599]
Length = 564
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 149/258 (57%), Gaps = 22/258 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA + + + + +QS +LGLTATL+RED D+ LIGPK ++ W EL+++ F
Sbjct: 312 EVHLLPAPIIK-LTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIPWRELEEKKF 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C ++ P+ +Y+V + + N KYR + +I E +
Sbjct: 371 IAEAYCYDIRIPLDDSHRSDYVVSSDKVKFRIASENILKYRVVKKIIEKLEGK------- 423
Query: 337 SDNVFALKHYAVKMNK-------PYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTS 389
N+ + Y ++N+ I G T QSER I + FK ++ + VSKVA+ +
Sbjct: 424 --NILIIGQYLDQLNEMKRLTGYTIITGKTPQSERDIIYKKFKTG-EIKILIVSKVANLA 480
Query: 390 FDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449
DLP+ANVLIQIS GSR++EAQRLGR+LR KKG E ++F+++++ DT E ++
Sbjct: 481 VDLPDANVLIQISGTFGSRQEEAQRLGRVLRPKKG----ENKSYFFSIITTDTKEEDFAH 536
Query: 450 KRQRFLINQGYSYKVITK 467
KRQ FL QGY Y+++ K
Sbjct: 537 KRQLFLTEQGYHYELLDK 554
>gi|374586244|ref|ZP_09659336.1| helicase domain-containing protein [Leptonema illini DSM 21528]
gi|373875105|gb|EHQ07099.1| helicase domain-containing protein [Leptonema illini DSM 21528]
Length = 608
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 145/257 (56%), Gaps = 22/257 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q+ +LGLTATL+RED D+ LIGPK Y+ W EL+KR +
Sbjct: 312 EVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELEKRSW 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C E+ M E +Y V ++ L NP K A + ++ H
Sbjct: 371 IANAKCIEIRVEMDEELRLKYSVSDDREKYRLASENPAKLDAIEKIMGVHG--------- 421
Query: 337 SDNVFALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTS 389
S+N+ + Y ++ N P I G T ER ++ + F+ + + VS+VA+ S
Sbjct: 422 SNNILIIGQYLQQLDVISQHFNLPMITGNTPLMERERLYKAFR-EGREPCLIVSRVANFS 480
Query: 390 FDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449
DLP+A V IQ+S GSR++EAQRLGR+LR K E+ AFFYT+V++DT E ++
Sbjct: 481 IDLPDARVAIQVSGTFGSRQEEAQRLGRVLRPK----GEDNMAFFYTVVTRDTTEERFAH 536
Query: 450 KRQRFLINQGYSYKVIT 466
RQ FL QGY Y + T
Sbjct: 537 NRQLFLAEQGYEYNLHT 553
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ V L+L + +S+ QWK + + + I ++ E K+ KP
Sbjct: 218 AGKTIVGIGVMQLVGAHTLILVTNTLSIRQWKSEILDKTDISEDDIGEYSGEKKELKP-- 275
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY++I+H +K+ A WG+++ D+
Sbjct: 276 --ITIATYNIITHRKKKGG-AFTHYNIFGEGNWGLVVYDE 312
>gi|300870216|ref|YP_003785087.1| putative DNA repair helicase [Brachyspira pilosicoli 95/1000]
gi|404475446|ref|YP_006706877.1| DNA repair helicase [Brachyspira pilosicoli B2904]
gi|431806738|ref|YP_007233636.1| DNA repair helicase [Brachyspira pilosicoli P43/6/78]
gi|434382657|ref|YP_006704440.1| putative DNA repair helicase [Brachyspira pilosicoli WesB]
gi|300687915|gb|ADK30586.1| putative DNA repair helicase [Brachyspira pilosicoli 95/1000]
gi|404431306|emb|CCG57352.1| putative DNA repair helicase [Brachyspira pilosicoli WesB]
gi|404436935|gb|AFR70129.1| putative DNA repair helicase [Brachyspira pilosicoli B2904]
gi|430780097|gb|AGA65381.1| putative DNA repair helicase [Brachyspira pilosicoli P43/6/78]
Length = 565
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 151/257 (58%), Gaps = 9/257 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA + + + + +QS +LGLTATL+RED D+ LIGPK ++ W EL+++ F
Sbjct: 313 EVHLLPAPIIK-LTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDMPWRELEEKKF 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C ++ P+ E +Y+V + + N KY + +I E G ++
Sbjct: 372 IAEAYCYDLRIPLDNEQRADYVVSSDKVKFRIASENILKYEIVKKIIKKLE--GKNILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + I G T Q+ER +I + FK + ++ + VSKVA+ + DLP+AN
Sbjct: 430 GQYLNQLNEMKRQTGYTIITGKTPQAERDEIYKKFK-SGEIKILIVSKVANLAVDLPDAN 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQIS GSR++EAQRLGR+LR KKG E ++F+++++ DT E +S KRQ FL
Sbjct: 489 VLIQISGTFGSRQEEAQRLGRVLRPKKG----ENKSYFFSVITSDTKEEDFSHKRQLFLT 544
Query: 457 NQGYSYKVITKLAGMEE 473
QGY Y+++ +A EE
Sbjct: 545 EQGYHYELL-DMASFEE 560
>gi|386346047|ref|YP_006044296.1| type III restriction protein res subunit [Spirochaeta thermophila
DSM 6578]
gi|339411014|gb|AEJ60579.1| type III restriction protein res subunit [Spirochaeta thermophila
DSM 6578]
Length = 563
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 145/249 (58%), Gaps = 12/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ + GLTATL+RED K L L+GPK Y+ W +++ +G+
Sbjct: 317 EVHLLPAPVFR-ITAELQAKRRCGLTATLVREDGKERHLFALVGPKRYDIPWKDVEAQGW 375
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD-KTIV 335
IA C E+ P+ + Y+ K+ + NP K R L+ ER D T++
Sbjct: 376 IAEALCYEIRIPLPEDLRLAYIAADQRKKHTIASTNPLKDRVVAALL---ERHADLPTLI 432
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L+ A + P I G T ER ++ + FK ++ + VS+VA+ S DLP+A
Sbjct: 433 IGQYLNQLERIARTLGLPLITGRTPNRERERLYREFKEG-RITRLVVSRVANFSIDLPDA 491
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V IQ+S GSR++EAQRLGRILR K ++A+FYT+V++DT+E ++ RQRFL
Sbjct: 492 AVAIQVSGTFGSRQEEAQRLGRILRPK------HHHAYFYTIVTRDTLEEHFAANRQRFL 545
Query: 456 INQGYSYKV 464
QGY Y++
Sbjct: 546 TEQGYRYQM 554
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ R L+L + + QW + +T + I +T E+KD KP
Sbjct: 222 AGKTVVGLALMAHYRTSTLILTPNVAAAHQWIDEILDKTTLTEDQIAEYTGESKDIKP-- 279
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQN------QEWGIMLLDD 136
+ V TY ++ +W D T ++ + + WG+++ D+
Sbjct: 280 --VTVATYHIL------TWRPDHTQEYYPHFDLFLARNWGLIIYDE 317
>gi|383639665|ref|ZP_09952071.1| ATP-dependent DNA helicase [Streptomyces chartreusis NRRL 12338]
Length = 547
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 148/251 (58%), Gaps = 12/251 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR--GDKTI 334
IA C EV ++ Y + ++ K + T+ ++ RR G + +
Sbjct: 357 IAPADCVEVRVNLTDAERLAYATAEAEEKYRFCATTDTKRKVTEAIV----RRFAGQQIL 412
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L + P I G TS ++R ++ F+ +++ + VSKVA+ S DLPE
Sbjct: 413 VIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANFSIDLPE 471
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V IQ+S GSR++EAQRLGR+LR K ++ + A FY++V++DT++ ++ RQRF
Sbjct: 472 ATVAIQVSGTFGSRQEEAQRLGRVLRPK----SDGHQAHFYSVVARDTIDQDFAAHRQRF 527
Query: 455 LINQGYSYKVI 465
L QGY+Y+++
Sbjct: 528 LAEQGYAYRIM 538
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG + + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGSMAQAKSTTLILVTNTVSARQWKHELVRRTSLTEDEIGEYSGTKKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --VTIATYQVLTTKRKGVY---PHLELFDSRDWGLIVYDE 298
>gi|359420342|ref|ZP_09212280.1| putative ATP-dependent DNA helicase [Gordonia araii NBRC 100433]
gi|358243699|dbj|GAB10349.1| putative ATP-dependent DNA helicase [Gordonia araii NBRC 100433]
Length = 561
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 144/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK +++ W +++ +G+
Sbjct: 304 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDSPWKDIEAQGW 362
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + + ++ L K + ++ H G T++
Sbjct: 363 IAPAECIEVRVTLTDSERLSYAIAENDEKYKLCSTAHTKVGVVKSILDRHP--GAPTLII 420
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER + F+ +V + VSKVA+ S DLPEA+
Sbjct: 421 GAYLDQLAELGEALDAPVIQGSTKTKEREALFDAFRRG-EVERLVVSKVANFSIDLPEAS 479
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K ++ A FY++VS+DT++ Y+ RQRFL
Sbjct: 480 VAVQVSGTFGSRQEEAQRLGRLLRPK----SDGGQAHFYSVVSRDTLDADYAAHRQRFLA 535
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 536 EQGYAYRIV 544
>gi|256374606|ref|YP_003098266.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
gi|255918909|gb|ACU34420.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
Length = 550
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 145/249 (58%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + ++ LIGPK ++ W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGQEGEVFSLIGPKRFDVPWRDIEAQGW 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + ++ H G+ +V
Sbjct: 358 IAPAECTEVRVTLTDAERLGYATAEPEERYKLCSTARTKLPVVKAVLDKHP--GEPALVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ + P + G T ER ++ F+ +++T+ VSKVA+ S DLPEA+
Sbjct: 416 GAYLDQLEELGEALGAPVVQGATKNKEREELFDAFRRG-ELSTLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ A FY++VS+DT++ Y+ RQRFL
Sbjct: 475 VAVQVSGTFGSRQEEAQRLGRLLRPK----ADGRQAHFYSVVSRDTLDTDYAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 531 EQGYAYRIV 539
>gi|295696317|ref|YP_003589555.1| type III restriction protein res subunit [Kyrpidia tusciae DSM
2912]
gi|295411919|gb|ADG06411.1| type III restriction protein res subunit [Kyrpidia tusciae DSM
2912]
Length = 553
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 148/256 (57%), Gaps = 8/256 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV +PA +FR I Q+ +LGLTATL+RED + ++ LIGPK ++ W +++ G+
Sbjct: 298 EVQLVPAPIFRFSAGI-QNCRRLGLTATLVREDGRETEVFSLIGPKCFDLPWRTVEEEGW 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IAR +C E+ P+ P Y ++ +R + NP K L+A H RG +V
Sbjct: 357 IARAECYELRVPLDPAAEEAYRQAESRQRWRIAATNPRKVEVAAELVARH--RGTPVLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A ++ P I G T + R + F+ ++ + +S+VA+T+ DLP+A
Sbjct: 415 GHYLDQLRELAHRLGAPDITGDTPERVRRETYDAFRRG-EIPVLCLSRVANTAVDLPDAR 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +++S + GSR++EAQRLGR+LR KK + A Y LV++ T E+ + +RQ+FL
Sbjct: 474 VAVELSGNFGSRQEEAQRLGRLLRLKK----DGGGARLYMLVTEGTEEVETAVRRQQFLA 529
Query: 457 NQGYSYKVITKLAGME 472
QGY Y++ T AG+E
Sbjct: 530 EQGYEYRIFTVRAGVE 545
>gi|257457572|ref|ZP_05622739.1| helicase domain protein [Treponema vincentii ATCC 35580]
gi|257444958|gb|EEV20034.1| helicase domain protein [Treponema vincentii ATCC 35580]
Length = 614
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 10/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK Y+ W EL+++G+
Sbjct: 359 EVHLLPAPVFR-ITAELQVIRRLGLTATLIREDGCEGDVFSLVGPKRYDVPWKELEEKGW 417
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ P+ EY ++ + N K + L+A H D+ ++
Sbjct: 418 IAHAYCTEIRIPLPVSKEIEYAAAPLREKHRIASENEAKNDIVRQLLARHT--DDQILII 475
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ LK A ++ P I G T +ER + F+ ++ + VSKVA+ + DLP+A+
Sbjct: 476 GQYITQLKKIADAVHAPLITGKTPNAEREVLYDAFRAG-DISVLVVSKVANFAIDLPDAS 534
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K E ++FFYTLV++ ++E + RQ+FL
Sbjct: 535 VAIQISGTFGSRQEEAQRLGRILRPK------ERDSFFYTLVTRHSVEEECADHRQKFLA 588
Query: 457 NQGYSYKVIT 466
QGY+Y +IT
Sbjct: 589 EQGYAYSLIT 598
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ + L+L + +V QWK + + D I ++SE K+ KP
Sbjct: 265 AGKTIVGMLVMSMLNTDTLILTTNTAAVHQWKRELIDKTELDPDSIGIYSSETKEIKP-- 322
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQW-----LQNQEWGIMLLDD 136
+ V TY ++ +W D ++ + + WG+++ D+
Sbjct: 323 --VTVATYQIL------TWRPDIEAEFPHFKLFRERNWGLIIYDE 359
>gi|54022596|ref|YP_116838.1| DNA helicase [Nocardia farcinica IFM 10152]
gi|54014104|dbj|BAD55474.1| putative DNA helicase [Nocardia farcinica IFM 10152]
Length = 552
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV ++ Y + +R L K + ++A H T+V
Sbjct: 360 IAPAECIEVRVTLTDAERMAYATAEPEERYKLCSTARTKIPVVESILAKHPDA--PTLVI 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ ++ ++ P I G T ER + F+ ++ + VSKVA+ S DLPEA+
Sbjct: 418 GAYLEQIEELGAALDAPVIQGSTKNKEREALFDAFRRG-EIPVLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRFL
Sbjct: 477 VAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG A + L+L + V+ QW+ + ++ + I ++ E K+ +P
Sbjct: 208 GAGKTMVGAAAMAKAKATTLILVTNTVAGRQWRRELLARTSLTEDEIGEYSGERKEIRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 267 ---VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 301
>gi|328949357|ref|YP_004366694.1| helicase [Treponema succinifaciens DSM 2489]
gi|328449681|gb|AEB15397.1| helicase domain protein [Treponema succinifaciens DSM 2489]
Length = 595
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 148/249 (59%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IPA +FR V +Q+ ++GLTATL+RED ++ L+GPK Y+ W EL+K +
Sbjct: 335 EVHMIPAPVFR-VAAELQAVRRVGLTATLVREDGCEGNVFSLVGPKRYDVPWKELEKAKW 393
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ +C EV + EY V ++ + NP K + Q L+ + + DK ++
Sbjct: 394 IAKAECIEVRLGLPENKEIEYAVAANREKHRIASENPLKNKIVQELV--EKFKDDKILII 451
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A +N P I G T SER I +F+ + K+ + VSKVA+ + DLP+A+
Sbjct: 452 GQFLTHLEIIAKLLNVPIITGKTKNSERDIIYDDFR-SGKIRVLVVSKVANFAIDLPDAS 510
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K E + F+TL+++ T+E + RQ+FL
Sbjct: 511 VAIQVSGTFGSRQEEAQRLGRILRPK------ERTSRFFTLITRGTVEEDFGSNRQKFLA 564
Query: 457 NQGYSYKVI 465
QGYSY+++
Sbjct: 565 EQGYSYRIV 573
>gi|307718024|ref|YP_003873556.1| DNA-helicase [Spirochaeta thermophila DSM 6192]
gi|306531749|gb|ADN01283.1| putative DNA-helicase [Spirochaeta thermophila DSM 6192]
Length = 588
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 145/249 (58%), Gaps = 12/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q+ + GLTATL+RED K L L+GPK ++ W E++ +G+
Sbjct: 342 EVHLLPAPVFR-ITAELQAKRRCGLTATLVREDGKERHLFALVGPKRHDIPWKEVEAQGW 400
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD-KTIV 335
IA C E+ P+ + Y+ K+ + NP K R L+ ER D T++
Sbjct: 401 IAEALCYEIRIPLPEDLRLAYIAADQRKKHTIASTNPLKDRVVAVLL---ERHPDLPTLI 457
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L+ A + P I G T ER ++ + FK ++ + VS+VA+ S DLP+A
Sbjct: 458 IGQYLDQLERIARTLGLPLITGRTPNRERERLYREFKEG-RITRLVVSRVANFSIDLPDA 516
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V IQ+S GSR++EAQRLGRILR K ++A+FYT+V++DT+E ++ RQRFL
Sbjct: 517 AVAIQVSGTFGSRQEEAQRLGRILRPK------HHHAYFYTIVTRDTLEEHFAANRQRFL 570
Query: 456 INQGYSYKV 464
QGY Y++
Sbjct: 571 TEQGYRYQM 579
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG+ R L+L + + QW + +T + I +T E+KD KP
Sbjct: 247 AGKTVVGLALMAHYRTSTLILTPNVAAAHQWIDEILDKTTLTEDQIAEYTGESKDIKP-- 304
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQN------QEWGIMLLDD 136
+ V TY ++ +W DQT + + + WG+++ D+
Sbjct: 305 --VTVATYHIL------TWRPDQTQEHYPHFDLFLARNWGLIIYDE 342
>gi|317123892|ref|YP_004098004.1| helicase [Intrasporangium calvum DSM 43043]
gi|315587980|gb|ADU47277.1| helicase domain protein [Intrasporangium calvum DSM 43043]
Length = 550
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 142/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + +D+ LIGPK ++A W +++ +G+
Sbjct: 305 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKDIEAQGY 363
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + R L K + L H + T++
Sbjct: 364 IAPADCVEVRVTLPDSLRLAYATAEPEDRYRLASCADAKLAVVEQLAQRHT--AEPTLII 421
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A +++ I G T+ ER ++ F+ ++ + VSKVA+ S DLPEA+
Sbjct: 422 GQYLDQLHEIAERLDADVITGETTVRERQRLYDAFRRG-EITRLVVSKVANFSIDLPEAS 480
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FYT+V++DT++ ++ RQRFL
Sbjct: 481 VAIQVSGTFGSRQEEAQRLGRVLRPK----GDGRTAHFYTVVARDTVDADFAAHRQRFLA 536
Query: 457 NQGYSYKVI 465
QGYSY+++
Sbjct: 537 EQGYSYRIV 545
>gi|363420727|ref|ZP_09308818.1| DNA repair helicase [Rhodococcus pyridinivorans AK37]
gi|359735394|gb|EHK84355.1| DNA repair helicase [Rhodococcus pyridinivorans AK37]
Length = 552
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 142/248 (57%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK ++A W +++ +G+
Sbjct: 301 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKDIEAQGW 359
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y V + +R L K + ++ H+ T++
Sbjct: 360 IAPADCVEVRVTLTDAERMAYAVAEPEERYKLCSTARTKIPVVKSILEQHQDA--PTLII 417
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T ER + F+ + ++ + VSKVA+ S DLPEA+
Sbjct: 418 GAYIDQLDELGEALDAPVIKGSTKTKEREALFDRFR-SGELKVLVVSKVANFSIDLPEAS 476
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR K + A FY++VS+DT++ Y+ RQRFL
Sbjct: 477 VAIQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVSRDTLDAEYAAHRQRFLA 532
Query: 457 NQGYSYKV 464
QGY+Y++
Sbjct: 533 EQGYAYRI 540
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 209 AGKTMVGAAAMAKAGATTLILVTNTVAGRQWKRELIARTSLTEDEIGEYSGEKKEIRP-- 266
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+M+ D+
Sbjct: 267 --VTIATYQVITRKSKGEY---RNLELFDSRDWGLMIYDE 301
>gi|392959534|ref|ZP_10325017.1| type III restriction protein res subunit [Pelosinus fermentans DSM
17108]
gi|421052601|ref|ZP_15515588.1| type III restriction protein res subunit [Pelosinus fermentans B4]
gi|421062252|ref|ZP_15524439.1| type III restriction protein res subunit [Pelosinus fermentans B3]
gi|421064029|ref|ZP_15525951.1| type III restriction protein res subunit [Pelosinus fermentans A12]
gi|421070443|ref|ZP_15531577.1| helicase domain-containing protein [Pelosinus fermentans A11]
gi|392442914|gb|EIW20475.1| type III restriction protein res subunit [Pelosinus fermentans B4]
gi|392444064|gb|EIW21536.1| type III restriction protein res subunit [Pelosinus fermentans B3]
gi|392448621|gb|EIW25810.1| helicase domain-containing protein [Pelosinus fermentans A11]
gi|392456473|gb|EIW33222.1| type III restriction protein res subunit [Pelosinus fermentans DSM
17108]
gi|392461889|gb|EIW38034.1| type III restriction protein res subunit [Pelosinus fermentans A12]
Length = 584
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 147/252 (58%), Gaps = 14/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVHT+PA +F+ V +Q+ +LGLTATL+RED K AD+ LIGPK + W E++ G+
Sbjct: 328 EVHTLPAPVFQ-VTAELQAKRRLGLTATLVREDGKEADVFTLIGPKKLDVPWTEMESAGW 386
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVM---NPNKYRATQYLIAYHERRGDKT 333
IA C EV PM E C + Y M N +K +A +Y++ H+ G+
Sbjct: 387 IATAVCTEVRVPMDFSLRME---CAQVPERIAYRMEAENTSKLKAIEYIL--HKHAGEGI 441
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ + L+ A P I G +R ++ + F+ N K+ + VSKVA+ + DLP
Sbjct: 442 LIIGQYIKQLEGIAEYFGFPLITGKMPTVKRDELYEAFR-NRKIPVLIVSKVANFAIDLP 500
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A V +Q+S GSR++EAQRLGRILR K + +A+FY++VS+D+ E ++ RQ
Sbjct: 501 DAAVGVQVSGAFGSRQEEAQRLGRILRPKD----DGRSAYFYSVVSKDSREQEFAHHRQL 556
Query: 454 FLINQGYSYKVI 465
FL QGY Y+++
Sbjct: 557 FLTEQGYQYQIL 568
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG 96
AGK+++G+ A V L+L S +V QW + + ++ ++ + KD
Sbjct: 233 GAGKTIIGIGAMEKVGMNTLILTTSTSAVHQWMREIVEKTDLPAEIVGEYSGDRKDI--- 289
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
C + VTTY M+++ ++ + + WG+++ D+
Sbjct: 290 CPVTVTTYQMVTYRPVKNGPFPH-FEIFNARAWGLVIYDE 328
>gi|320538234|ref|ZP_08038123.1| type III restriction enzyme, res subunit [Treponema phagedenis
F0421]
gi|320144916|gb|EFW36643.1| type III restriction enzyme, res subunit [Treponema phagedenis
F0421]
Length = 562
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 146/252 (57%), Gaps = 12/252 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + +Q +LGLTATL+RED D+ L+GPK Y+ W EL++ G+
Sbjct: 318 EVHLLPAPVFR-ITAELQIIRRLGLTATLIREDGCEGDVFSLVGPKRYDVPWKELEEAGW 376
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + +Y + ++ + NP K +I E+ D I+
Sbjct: 377 IAHAYCIEVRIALDSKKEIDYAIASQREKYRIASENPRKL---PIIIKLLEKHADAQILI 433
Query: 337 SDNVFA-LKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
A L A ++ P I G + +ER + +F++ K+ + VSKVA+ + DLP+A
Sbjct: 434 IGQYIAQLTEIATEIQAPVITGKMTNAEREILYNDFRMG-KIKVLVVSKVANFAIDLPDA 492
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+V IQIS GSR++EAQRLGRILR K E +++FYTLV++ ++E ++ RQ+FL
Sbjct: 493 SVAIQISGSFGSRQEEAQRLGRILRPK------EESSYFYTLVTRQSVEEEFAEHRQKFL 546
Query: 456 INQGYSYKVITK 467
QGY Y ++T+
Sbjct: 547 AEQGYEYSILTE 558
>gi|429125100|ref|ZP_19185632.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30446]
gi|426279162|gb|EKV56189.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30446]
Length = 564
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 149/258 (57%), Gaps = 22/258 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA + + + + +QS +LGLTATL+RED D+ LIGPK ++ W EL+++ F
Sbjct: 312 EVHLLPAPIIK-LTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIPWRELEEKKF 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C ++ P+ +Y++ + + N KY+ + +I E +
Sbjct: 371 IAEAYCYDIRIPLDDSHRSDYVISSDKVKFRIASENVLKYKIVKKIIEKLEGK------- 423
Query: 337 SDNVFALKHYAVKMNK-------PYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTS 389
N+ + Y ++N+ I G T QSER I + FK ++ + VSKVA+ +
Sbjct: 424 --NILIIGQYLDQLNEMKRLTGYTIITGKTPQSERDIIYKKFKTG-EIKILIVSKVANLA 480
Query: 390 FDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449
DLP+ANVLIQIS GSR++EAQRLGR+LR KKG E ++F+++++ DT E ++
Sbjct: 481 VDLPDANVLIQISGTFGSRQEEAQRLGRVLRPKKG----ENKSYFFSIITTDTKEEDFAH 536
Query: 450 KRQRFLINQGYSYKVITK 467
KRQ FL QGY Y+++ K
Sbjct: 537 KRQLFLTEQGYHYELLDK 554
>gi|421074772|ref|ZP_15535796.1| type III restriction protein res subunit [Pelosinus fermentans
JBW45]
gi|392527131|gb|EIW50233.1| type III restriction protein res subunit [Pelosinus fermentans
JBW45]
Length = 584
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 146/252 (57%), Gaps = 14/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVHT+PA +F+ V +Q+ +LGLTATL+RED K AD+ LIGPK + W E++ G+
Sbjct: 328 EVHTLPAPVFQ-VTAELQAKRRLGLTATLVREDGKEADVFTLIGPKKLDVPWTEMESAGW 386
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVM---NPNKYRATQYLIAYHERRGDKT 333
IA C EV PM E C + Y M N K +A +Y++ H+ G+
Sbjct: 387 IATAVCTEVRVPMDFSLRME---CAQVPERIAYRMEAENTFKLKAIEYIL--HKHAGEGI 441
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
++ + L+ A P I G +R ++ Q F+ N K+ + VSKVA+ + DLP
Sbjct: 442 LIIGQYIKQLEAIADYFGFPLITGKMPTVKRDELYQAFR-NRKIAVLIVSKVANFAIDLP 500
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+A V +Q+S GSR++EAQRLGRILR K + +A+FY++VS+D+ E ++ RQ
Sbjct: 501 DAAVGVQVSGAFGSRQEEAQRLGRILRPKD----DGRSAYFYSVVSKDSREQEFAHHRQL 556
Query: 454 FLINQGYSYKVI 465
FL QGY Y+++
Sbjct: 557 FLTEQGYQYQIL 568
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG 96
AGK+++G+ A V L+L S +V QW + + ++ ++ + KD
Sbjct: 233 GAGKTIIGIGAMERVGMNTLILTTSTSAVHQWMREIVEKTDLPAEIVGEYSGDRKDI--- 289
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
C + VTTY M+++ ++ + + WG+++ D+
Sbjct: 290 CPVTVTTYQMVTYRPVKNGPFPH-FEIFNARAWGLVIYDE 328
>gi|384209279|ref|YP_005594999.1| DNA or RNA helicase of superfamily II [Brachyspira intermedia
PWS/A]
gi|343386929|gb|AEM22419.1| DNA or RNA helicase of superfamily II [Brachyspira intermedia
PWS/A]
Length = 564
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 145/251 (57%), Gaps = 8/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA + + + + +QS +LGLTATL+RED D+ LIGPK ++ W EL+++ F
Sbjct: 312 EVHLLPAPIIK-LTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIPWRELEEKKF 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C ++ P+ +Y+V + + N KY + +I E G ++
Sbjct: 371 IAEAYCYDIRIPLDDSHRSDYVVSSDKVKFRIASENVFKYTIVKKIIEKLE--GKNILII 428
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + I G T QSER I + FK ++ + VSKVA+ + DLP+AN
Sbjct: 429 GQYLDQLNEMKKRTGYTIITGKTPQSERDIIYKKFKTG-EIKILIVSKVANLAVDLPDAN 487
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQIS GSR++EAQRLGR+LR KKG E ++F+++++ DT E ++ KRQ FL
Sbjct: 488 VLIQISGTFGSRQEEAQRLGRVLRPKKG----ENKSYFFSIITTDTKEEDFAHKRQLFLT 543
Query: 457 NQGYSYKVITK 467
QGY Y+++ K
Sbjct: 544 EQGYHYELLDK 554
>gi|225619690|ref|YP_002720947.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
WA1]
gi|225214509|gb|ACN83243.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
WA1]
Length = 564
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 145/251 (57%), Gaps = 8/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA + + + + +QS +LGLTATL+RED D+ LIGPK ++ W EL+++ F
Sbjct: 312 EVHLLPAPIIK-LTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIPWRELEEKKF 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C ++ P+ +Y++ + + N KY + +I E G ++
Sbjct: 371 IAEAYCYDIRIPLDDSHRSDYVISSDKVKFRIASENVLKYTIVKKIIEKLE--GKNILII 428
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + I G T QSER I + FK ++ + VSKVA+ + DLP+AN
Sbjct: 429 GQYLDQLNEMKKRTGYTIITGKTPQSERDVIYKKFKTG-EIKILIVSKVANLAVDLPDAN 487
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQIS GSR++EAQRLGR+LR KKG E ++F+++++ DT E ++ KRQ FL
Sbjct: 488 VLIQISGTFGSRQEEAQRLGRVLRPKKG----ENKSYFFSIITTDTKEEDFAHKRQLFLT 543
Query: 457 NQGYSYKVITK 467
QGY Y+++ K
Sbjct: 544 EQGYHYELLDK 554
>gi|211909008|gb|ACJ12794.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [Sebastiscus marmoratus]
Length = 182
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKD P+GC
Sbjct: 23 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDNPIGC 82
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+++LD+ + AK
Sbjct: 83 SVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHTIPAK 128
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 60/64 (93%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCK+GLTATL+REDDKI DLNFLIGPKL+EANW+ELQ
Sbjct: 119 LDEVHTIPAKMFRRVLTIVQAHCKMGLTATLVREDDKIVDLNFLIGPKLFEANWMELQNS 178
Query: 275 GFIA 278
G+IA
Sbjct: 179 GYIA 182
>gi|260904266|ref|ZP_05912588.1| type III restriction protein res subunit [Brevibacterium linens
BL2]
Length = 544
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 146/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR ++ Q+ +LGLTATL+RED + ++ LIGPK YE W EL++ G+
Sbjct: 302 EVHLLPAPIFRLTASL-QARRRLGLTATLVREDGREDEVFSLIGPKQYEVPWKELERMGY 360
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y R L + K + L+A H + + +V
Sbjct: 361 IATASCHEVRVRLDGGTRTAYARADGEDRYRLAATSDAKLPIVRELVADHPKA--QILVI 418
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ +++ P + G T +S+R ++ ++F+ + + + VSKVA+ S DLP A+
Sbjct: 419 GQYLDQLEEVGRELDAPVLTGQTPESQRQELFRDFR-SGAIPVLVVSKVANFSVDLPAAS 477
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRILR K+ + +A FYT+V+ DT++ ++ +R+RFL
Sbjct: 478 VAIQVSGAFGSRQEEAQRLGRILRPKE----DSGSATFYTVVAADTVDEHFAAQRRRFLT 533
Query: 457 NQGYSYKV 464
QGYSY +
Sbjct: 534 EQGYSYDI 541
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VGV V+ L+L + V+ QWK + ++ + + ++ K+ +P
Sbjct: 210 AGKTIVGVATMSRVQTTTLILVTNSVAARQWKDEILARTSLTEDEVGEYSGSTKEIRP-- 267
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ +K S+ ++ L ++WG+++ D+
Sbjct: 268 --ITIATYQVLTTRRKGSY---LHLELLDAKDWGLVIYDE 302
>gi|296127753|ref|YP_003635005.1| helicase domain-containing protein [Brachyspira murdochii DSM
12563]
gi|296019569|gb|ADG72806.1| helicase domain protein [Brachyspira murdochii DSM 12563]
Length = 564
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 146/251 (58%), Gaps = 8/251 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA + + + + +QS +LGLTATL+RED D+ LIGPK ++ W EL+++ F
Sbjct: 312 EVHLLPAPIIK-LTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIPWRELEEKKF 370
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C ++ P+ +Y+V + + N KY + +I + +G ++
Sbjct: 371 IAEAYCYDIRIPLDESHRSDYVVSSDKVKFRIASENVLKYTVVKKII--EKLQGKNILII 428
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + I G T Q+ER I + FK ++ + VSKVA+ + DLP+AN
Sbjct: 429 GQYLDQLNEMKKRTGYTIITGKTPQAERDIIYKKFKTG-EIKILIVSKVANLAVDLPDAN 487
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQIS GSR++EAQRLGR+LR KKG E ++F+++++ DT E ++ KRQ FL
Sbjct: 488 VLIQISGTFGSRQEEAQRLGRVLRPKKG----ENKSYFFSIITTDTKEEDFAHKRQLFLT 543
Query: 457 NQGYSYKVITK 467
QGY Y+++ K
Sbjct: 544 EQGYHYELLDK 554
>gi|333997565|ref|YP_004530177.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-2]
gi|333740745|gb|AEF86235.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-2]
Length = 599
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 140/248 (56%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED + L+GPK Y+ W +L+ +G+
Sbjct: 337 EVHLLPAPVFR-VTAELQAVRRLGLTATLIREDRAEDAVFSLVGPKRYDVPWKDLEGKGW 395
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ M + Y V ++ + NP K + L+ H D +V
Sbjct: 396 IAEALCTEIRLDMPEKLKIPYAVAAPREKYRIASENPYKEIIARQLVENHPE--DHILVI 453
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G T+ +ER ++ FK V I VSKVA+ + DLP+A+
Sbjct: 454 GQYIAQLESLARLLKAPLITGKTANAEREKVYGAFKRG-DVRVIVVSKVANFAIDLPDAS 512
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K N++FYTLVS+ T+E ++ RQ+FL
Sbjct: 513 MAIQVSGSFGSRQEEAQRLGRILRPKG------RNSYFYTLVSRYTVEEDFAANRQKFLA 566
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 567 EQGYKYAI 574
>gi|332669171|ref|YP_004452179.1| helicase domain-containing protein [Cellulomonas fimi ATCC 484]
gi|332338209|gb|AEE44792.1| helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 548
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 141/249 (56%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK ++A W +++ +G+
Sbjct: 299 EVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRFDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + + L K + ++A HE G T+V
Sbjct: 358 IAPADCVEVRLTLPDHERMLYATAEPEDKYRLAATAAGKNAVVERIVAQHE--GAPTLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A + I G T ER ++ F+ ++ + VSKVA+ S DLPEA+
Sbjct: 416 GQYLDQLHELAEHVGADLITGETPVRERQRLFDAFRAG-EITKLVVSKVANFSIDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGRI+R K+ + A FYT+V++DT++ ++ RQRFL
Sbjct: 475 VAIQVSGSFGSRQEEAQRLGRIMRPKE----DGRTAHFYTVVARDTVDQEFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYSIL 539
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A L+L + VS QW+ + +T + I ++ K+ +P
Sbjct: 206 GAGKTLVGAGAMARSSTTTLILVTNTVSARQWRDELVRRTTLTEDEIGEYSGARKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K + ++ L ++WG+++ D+
Sbjct: 265 ---VTIATYQVLTTKRKGVY---SHLELLDARDWGLVVYDE 299
>gi|339501119|ref|YP_004699154.1| type III restriction protein res subunit [Spirochaeta caldaria DSM
7334]
gi|338835468|gb|AEJ20646.1| type III restriction protein res subunit [Spirochaeta caldaria DSM
7334]
Length = 600
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 138/248 (55%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED + L+GPK Y+ W +L+ +G+
Sbjct: 354 EVHMLPAPVFR-VTAELQAVRRLGLTATLVREDGAEDAVFSLVGPKRYDVPWKDLEAKGW 412
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + + Y V + + NP K Q LI H D+ +V
Sbjct: 413 IAEALCTEIRLDLPEQLKIPYAVANQRAKYRIASENPLKIAVVQQLIENHPE--DRILVI 470
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A + P I G T +ER I FK ++ I VSKVA+ + DLP+A+
Sbjct: 471 GQYLSQLSELARILKVPLITGQTPHAEREVIYHRFKQG-ELRLIVVSKVANFAIDLPDAS 529
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K N++FYT+VS+ T+E ++ RQ+FL
Sbjct: 530 MAIQVSGSFGSRQEEAQRLGRILRPKN------RNSYFYTIVSRFTVEEEFAANRQKFLA 583
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 584 EQGYKYTI 591
>gi|386774129|ref|ZP_10096507.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 551
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 142/249 (57%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 299 EVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + Y + + S R L + K + + H G+ +V
Sbjct: 358 IAPAVCTEVRVTLPASDRMAYAMAEASDRPRLGAAHGAKVPVVERIARAHP--GEPLLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + + G T R Q+ +F+ +++ + VSKVA+ S DLPEA+
Sbjct: 416 GQYLDQLEEIAEHLGAELLTGQTPVKRRQQLFADFR-EGRIDRLVVSKVANFSVDLPEAS 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGR+LR K A+ +A FYT+V +DT + ++ RQRFL
Sbjct: 475 VAVQVSGAFGSRQEEAQRLGRLLRPK----ADGRSAHFYTVVMRDTQDQDFAAHRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y ++
Sbjct: 531 EQGYAYSIV 539
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A +++ L+L + VS QW+ + +T + I ++ K+ +P
Sbjct: 206 GAGKTLVGAGAMAAMQRTTLILVTNTVSARQWRDELLARTTLTEDEIGEYSGTTKEIRP- 264
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ +K ++ + ++WG++L D+
Sbjct: 265 ---VTIATYQVLTMKRK---GVHPHLELMSARDWGLILYDE 299
>gi|385993921|ref|YP_005912219.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5079]
gi|339293875|gb|AEJ45986.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5079]
Length = 240
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 134/232 (57%), Gaps = 7/232 (3%)
Query: 233 VQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPE 292
+QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+IA +C EV M+
Sbjct: 5 LQSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECVEVRVTMTDS 64
Query: 293 FYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNK 352
Y + +R + K + ++A H ++T+V + L ++
Sbjct: 65 ERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVIGAYLDQLDELGAELGA 122
Query: 353 PYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEA 412
P I G T SER + F+ +V T+ VSKVA+ S DLPEA V +Q+S GSR++EA
Sbjct: 123 PVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAAVAVQVSGTFGSRQEEA 181
Query: 413 QRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKV 464
QRLGRILR K A+ A FY++V++D+++ Y+ RQRFL QGY Y +
Sbjct: 182 QRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLAEQGYGYII 229
>gi|333995987|ref|YP_004528600.1| dna repair helicase Rad25 [Treponema azotonutricium ZAS-9]
gi|333735550|gb|AEF81499.1| dna repair helicase Rad25 (general transcription and dnarepair
factor iih subunit rad25) (tfiih subunit rad25)
[Treponema azotonutricium ZAS-9]
Length = 573
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 140/248 (56%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED + L+GPK Y+ W +L+ +G+
Sbjct: 315 EVHLLPAPVFR-VTAELQAVRRLGLTATLVREDGAEDAVFSLVGPKRYDVPWKDLEGKGW 373
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + Y V ++ L NP K A LI H D+ +V
Sbjct: 374 IAEAFCTEIRLELPGHLKIPYAVAAPREKYRLASENPLKEEAVVELIQNHP--DDQILVI 431
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A + P I G T +ER +I FK +V I VS+VA+ + DLP+A+
Sbjct: 432 GQYLSQLDSLAKLLKVPLITGKTPNTEREKIYNAFKKG-EVRVIVVSRVANFAIDLPDAS 490
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K E +++FYTLVS+ T+E ++ RQ+FL
Sbjct: 491 MAIQVSGSFGSRQEEAQRLGRILRPKD----EGRSSWFYTLVSRYTVEEDFAANRQQFLA 546
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 547 EQGYKYSI 554
>gi|374606946|ref|ZP_09679760.1| type III restriction protein res subunit [Paenibacillus
dendritiformis C454]
gi|374387451|gb|EHQ58959.1| type III restriction protein res subunit [Paenibacillus
dendritiformis C454]
Length = 561
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTATL+RED D+ LIGPK +E W +L++ G+
Sbjct: 303 EVHLLPAPVFRTTADL-QATRRLGLTATLVREDGCERDVFSLIGPKRFELPWRQLEEAGW 361
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+V C EV P+ Y +R + N K A + LIA H G T+V
Sbjct: 362 IAQVTCTEVRVPLCAATRIAYQQTGLRERARIAAENGAKIPAVRQLIARHP--GAPTLVI 419
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A + P + G T Q+ER ++ + FK ++ + VSKVA+ + DLP+A
Sbjct: 420 GQYLSQLDALAAALQAPVLTGQTPQAERQRLYEAFK-QGELPVLIVSKVANFAVDLPDAT 478
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR++EAQRLGR+LR KK + A+FYT+VS+ T E Y+ KRQ FL+
Sbjct: 479 VAIQVSGSYGSRQEEAQRLGRLLRPKK----DGRMAYFYTVVSEATKERDYALKRQLFLV 534
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 535 EQGYRYLI 542
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG+ A ++ L+L ++ SV+QWK + +T + +T K +P
Sbjct: 208 GAGKTIVGLAAMSALQSETLILTSNATSVKQWKEELLKRTTLKSEHVGEYTGADKQVRP- 266
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY ++++ Q++ E M+ ++WG+++ D+
Sbjct: 267 ---VTISTYQIMTYRQQKDGEWSH-MRLFHERDWGLIIYDE 303
>gi|448824182|ref|YP_007417351.1| putative helicase [Corynebacterium urealyticum DSM 7111]
gi|448277679|gb|AGE37103.1| putative helicase [Corynebacterium urealyticum DSM 7111]
Length = 556
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 139/249 (55%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA L S G L+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 304 EVHLLPAPGVPHDLRPAVSPPS-GAHRHLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 362
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV +S Y + S + L P K R + L+A H + ++
Sbjct: 363 IAPADCTEVRVQLSESERMVYATAEQSDKYRLAATTPAKNRVVKKLLAMHPE--EPALII 420
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V L+ A +++ P I G TS ++R ++ Q F+ + ++ T+ VSKVA+ S DLP A+
Sbjct: 421 GAYVDQLEEIAEELDVPVIDGKTSTAKREKLYQQFR-DGEITTLAVSKVANFSIDLPGAS 479
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQRLGRILR K + AFFYT+V++DT++ Y+ R RFL
Sbjct: 480 VAIQISGTFGSRQEEAQRLGRILRPKP----DGGGAFFYTVVTRDTLDADYAAHRMRFLA 535
Query: 457 NQGYSYKVI 465
QGY Y ++
Sbjct: 536 EQGYGYGIM 544
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK++VG + + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 211 GAGKTMVGAASMAKAKATTLILVTNTVAGRQWKDELVRRTSLTEDEIGEYSGEKKEIRP- 269
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ K + A ++ +++WG+++ D+
Sbjct: 270 ---VTIATYQVVTRKSKGEYRA---LELFDSRDWGLIIYDE 304
>gi|403251986|ref|ZP_10918301.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
gi|402914731|gb|EJX35739.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
Length = 547
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 138/249 (55%), Gaps = 8/249 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR I QS +LGLTATL+RED ++ LIGPK ++ W E++ +G+
Sbjct: 299 EVHLLPAPIFRFTADI-QSRRRLGLTATLVREDGMEGEVFSLIGPKRFDVPWKEIEAQGY 357
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y + R + K L H D+ +V
Sbjct: 358 IAPADCVEVRITLTDAERLNYATAEQEDRYRFCSTSQTKKEVAVALAKQHA--NDQVLVI 415
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L + + P I G T ER ++ F+ ++ + VSKVA+ S DLPEA
Sbjct: 416 GQYIDQLDQLSEALGVPVIKGDTPIKERERLYALFRTG-ELKCLVVSKVANFSIDLPEAT 474
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K A+ A FY+LV++DT++ +++ RQRFL
Sbjct: 475 IAIQVSGTFGSRQEEAQRLGRILRPK----ADGRGARFYSLVARDTIDQDFAQNRQRFLA 530
Query: 457 NQGYSYKVI 465
QGY+Y++I
Sbjct: 531 EQGYAYRII 539
>gi|330836652|ref|YP_004411293.1| helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748555|gb|AEC01911.1| helicase domain protein [Sphaerochaeta coccoides DSM 17374]
Length = 555
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 144/248 (58%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ V +Q+ ++GLTATL+RED + ++ L+GPK ++ W E++K+G+
Sbjct: 313 EVHMLPAPVFK-VTAELQAVHRVGLTATLIREDGREDEVFSLVGPKRFDVPWSEMEKQGW 371
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IAR C EV P+ + Y + ++ + NP K L++ H D ++
Sbjct: 372 IARAYCIEVKVPLPHDLELTYAIAGKREKHRVASENPIKMDVLDELLSRHA--DDYILII 429
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
V LK A K P I G T+ + R + F+ + + VSKVA+ + DLP+A+
Sbjct: 430 GQYVDQLKQIARKYGFPLITGSTANTRRDDLYAAFRSGGE-RVLVVSKVANFAIDLPDAS 488
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K + +FFY+LV++ + E +S RQ+FL
Sbjct: 489 IAIQVSGTFGSRQEEAQRLGRILRPKAKS------SFFYSLVTRYSSEEEFSENRQKFLA 542
Query: 457 NQGYSYKV 464
QGY+YK+
Sbjct: 543 EQGYTYKI 550
>gi|384108565|ref|ZP_10009458.1| DNA or RNA helicases of superfamily II [Treponema sp. JC4]
gi|383869952|gb|EID85558.1| DNA or RNA helicases of superfamily II [Treponema sp. JC4]
Length = 594
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 149/258 (57%), Gaps = 14/258 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V+ +Q+ ++GLTATL+RED + L+GPK Y+ W EL++ +
Sbjct: 348 EVHMLPAPVFR-VVAELQAVRRVGLTATLVREDHCEGYVFSLVGPKRYDVPWKELERDHW 406
Query: 277 IARVQCAEVWC--PMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
IA +C EV P+S E +Y V ++ + N K + +I H DK +
Sbjct: 407 IATAECIEVRIDLPVSQEI--DYAVATVREKHKMASQNVEKLPVVEEIIKTHPE--DKIL 462
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
V + L A K+ P I G + +ER +I +F+ + K+ + VSKVA+ + DLP+
Sbjct: 463 VIGQYLEQLDQIAKKIGAPIITGKVANAERDKIYADFR-SGKIRVLVVSKVANFAIDLPD 521
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A++ IQ+S GSR++EAQRLGRILR K E + FYTL++++T+E + RQ+F
Sbjct: 522 ASLAIQVSGTFGSRQEEAQRLGRILRPK------ERTSRFYTLITRNTVEEEFGSNRQKF 575
Query: 455 LINQGYSYKVITKLAGME 472
L QGY Y+++ G E
Sbjct: 576 LAEQGYQYRIVRYSPGCE 593
>gi|374815582|ref|ZP_09719319.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-1]
Length = 579
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 139/248 (56%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR V +Q+ +LGLTATL+RED + L+GPK Y+ W +L+ +G+
Sbjct: 323 EVHLLPAPVFR-VTAELQAVRRLGLTATLIREDGAEDAVFSLVGPKRYDVPWKDLESKGW 381
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ M + Y V ++ + NP K + L+ H D +V
Sbjct: 382 IAEALCTEIRLDMPEKLKIPYAVATPREKYRVASENPYKESIVRQLMDNHPE--DHILVI 439
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G T +ER ++ FK + I VSKVA+ + DLP+A+
Sbjct: 440 GQYITQLEGLARLLKVPLITGKTPNAEREKVYGAFKRG-EFRVIVVSKVANFAIDLPDAS 498
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ IQ+S GSR++EAQRLGRILR K N++FYTLVS+ T+E ++ RQ+FL
Sbjct: 499 MAIQVSGSFGSRQEEAQRLGRILRPKG------RNSYFYTLVSRYTVEEDFAANRQKFLA 552
Query: 457 NQGYSYKV 464
QGY Y +
Sbjct: 553 EQGYKYAI 560
>gi|403746349|ref|ZP_10954882.1| type III restriction protein res subunit [Alicyclobacillus
hesperidum URH17-3-68]
gi|403120680|gb|EJY55034.1| type III restriction protein res subunit [Alicyclobacillus
hesperidum URH17-3-68]
Length = 486
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 141/249 (56%), Gaps = 10/249 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVHT+PA+ FR + + KLGL+ATL+RED ++ D+ L+GP +++ +L G
Sbjct: 239 EVHTLPARWFRLTSELAAAR-KLGLSATLVREDGRVGDVLSLVGPVVFQTQARDLTDSGH 297
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A V+C EV P+ ++Y + + + NP+K A + A H R ++T+V
Sbjct: 298 LAPVRCVEVRVPLIGRDRQDYERGSAADKHRIAAQNPSKLDAATEICALH--RAERTLVM 355
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
L A ++ P I G T SER+++ F+ + + VS+VA+ + DLP A
Sbjct: 356 GYYTSPLHELANRLRVPVIDGRTLHSERLRLYNEFRAG-GLPVLIVSRVANAAIDLPSAT 414
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ +Q+S GSR++EAQRLGRILR A FY+LVS T+E+ + RQ +L+
Sbjct: 415 IAVQLSGLYGSRQEEAQRLGRILRPNGK------QAIFYSLVSDQTVEVRRAFHRQSYLV 468
Query: 457 NQGYSYKVI 465
QGY+Y+++
Sbjct: 469 EQGYTYEIV 477
>gi|90658431|gb|ABD97114.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658433|gb|ABD97115.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658435|gb|ABD97116.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658437|gb|ABD97117.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658439|gb|ABD97118.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658441|gb|ABD97119.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658443|gb|ABD97120.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658445|gb|ABD97121.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658447|gb|ABD97122.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658449|gb|ABD97123.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658451|gb|ABD97124.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658453|gb|ABD97125.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658455|gb|ABD97126.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658457|gb|ABD97127.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658459|gb|ABD97128.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658461|gb|ABD97129.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658463|gb|ABD97130.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658465|gb|ABD97131.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658467|gb|ABD97132.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658469|gb|ABD97133.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
Length = 102
Score = 155 bits (391), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/102 (66%), Positives = 81/102 (79%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH PA MFR+ + + H KLGLTATL+REDD+I DL +LIGPKLYEANW++L K G
Sbjct: 1 EVHVTPADMFRKCINNFKVHAKLGLTATLVREDDRIGDLGYLIGPKLYEANWMDLAKNGH 60
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRA 318
IA VQCAEVWCPM+PEFYREYL + KR+LL+ MNPNK +A
Sbjct: 61 IATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKIQA 102
>gi|302544484|ref|ZP_07296826.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
ATCC 53653]
gi|302462102|gb|EFL25195.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
ATCC 53653]
Length = 565
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 144/247 (58%), Gaps = 17/247 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + Q+ +LGLTATL+RED + +D+ LIGPK ++A W E++ +G+
Sbjct: 298 EVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGY 356
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV ++ Y +T ++ +K R T+ L+A H +G +T+V
Sbjct: 357 IAPADCVEVRVNLTDTERLAYATAETEEKYRYCATTASKQRITEALVAKH--KGQQTLVI 414
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T+ ++R ++ F+ +++ + VSKVA+ S DLPEA
Sbjct: 415 GQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRQG-ELSVLVVSKVANFSIDLPEAT 473
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY--------- 447
V IQ+S GSR++EAQRLGR+LR K A+ + A FY++V++DT++ +
Sbjct: 474 VAIQVSGTFGSRQEEAQRLGRVLRPK----ADGHPAVFYSVVARDTIDQDFAAHASGSWP 529
Query: 448 SRKRQRF 454
SR R RF
Sbjct: 530 SRVRYRF 536
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A T + L+L + VS QWKH+ ++ + I ++ K+ +P
Sbjct: 206 AGKTLVGAGAMATAKSTTLILVTNTVSARQWKHELVRRTSLTEEEIGEYSGTRKEIRP-- 263
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
I + TY +++ +K + ++ +++WG+++ D+
Sbjct: 264 --ITIATYQVLTTKRKGIY---PHLELFDSRDWGLIIYDE 298
>gi|374315062|ref|YP_005061490.1| DNA/RNA helicase [Sphaerochaeta pleomorpha str. Grapes]
gi|359350706|gb|AEV28480.1| DNA/RNA helicase, superfamily II [Sphaerochaeta pleomorpha str.
Grapes]
Length = 553
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 145/248 (58%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ ++GLTATL+RED + ++ L+GPK ++ W ELQ++GF
Sbjct: 311 EVHMLPAPVFK-ITAELQAVYRVGLTATLVREDGREDEVFSLVGPKRFDVPWNELQQQGF 369
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C+E+ + + Y + ++ + NP K + L+A H D ++
Sbjct: 370 IATAYCSEIRLDLPTDMEIPYAIANKREKYRIASENPLKLDVVKGLVARHP--DDYILII 427
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L+ A + P I G T ++R ++ + FK + + + VSKVA+ + DLP+A+
Sbjct: 428 GQYIKQLESIAAEFKLPIITGSTPNAKREELYRAFK-EGESHILVVSKVANFAIDLPDAS 486
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR +EAQRLGRILR K ++FFY++V++ + E ++ RQ+FL
Sbjct: 487 VAIQVSGTFGSRSEEAQRLGRILRPKN------RSSFFYSVVTRYSTEEEFAANRQKFLA 540
Query: 457 NQGYSYKV 464
QGYSY +
Sbjct: 541 EQGYSYDI 548
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
+GK++VG+T ++ R L++ + +V QW + T I +T E KD
Sbjct: 217 SGKTVVGMTIMSQLKTRTLIVTTNVAAVHQWISEILDKMTLTQQQIGEYTGEKKDPR--- 273
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ V TY ++++ + ++ L +WG+++ D+
Sbjct: 274 EVTVCTYQVLTYRPDKDGPFPH-LELLTKGQWGLIIYDE 311
>gi|390566548|ref|ZP_10246916.1| Type III restriction protein res subunit [Nitrolancetus hollandicus
Lb]
gi|390170199|emb|CCF86268.1| Type III restriction protein res subunit [Nitrolancetus hollandicus
Lb]
Length = 529
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 143/255 (56%), Gaps = 32/255 (12%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH++PA +FR + QS +LGLTATL+RED + D L+GP +Y W L+ G+
Sbjct: 293 EVHSLPADVFRSSAAL-QSRRRLGLTATLIREDGRERDAFSLVGPPVYSVPWRLLEHHGW 351
Query: 277 IARVQCAEVWC------PMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRG 330
IA V C EV P++PE RLL K R + L A H R
Sbjct: 352 IAPVDCVEVRVRPAREQPVTPE------------RLL-----AAKLRVLRVLAARH--RD 392
Query: 331 DKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSF 390
+ +V + + + + ++ P I G T SER + F+ + + + +S+VA+
Sbjct: 393 EPLLVIAHRLIEVAAASRALDAPVITGQTPASERRALYDAFR-SGEHRCLALSRVANAGV 451
Query: 391 DLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRK 450
DLP+A VL+Q+S GSR++EAQR+GR+LR K+G+ A FY+LV+ T E ++ +
Sbjct: 452 DLPDAAVLVQVSGAFGSRQEEAQRVGRLLRPKQGS-----RATFYSLVAAGTRETEFAGR 506
Query: 451 RQRFLINQGYSYKVI 465
RQRFLI+QGY Y+V+
Sbjct: 507 RQRFLIDQGYRYQVV 521
>gi|432335750|ref|ZP_19587311.1| DNA repair helicase, partial [Rhodococcus wratislaviensis IFP 2016]
gi|430777326|gb|ELB92688.1| DNA repair helicase, partial [Rhodococcus wratislaviensis IFP 2016]
Length = 537
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 136/239 (56%), Gaps = 10/239 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 308 EVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW 366
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK-TIV 335
IA C EV ++ Y V + +R L K + ++ ER D T++
Sbjct: 367 IAPADCVEVRVTLTDAERMSYAVAEPDERYKLCSTAHTKIAVVKSIL---ERHTDAPTLI 423
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
+ L +N P I G T ER ++ F+ ++ T+ VSKVA+ S DLPEA
Sbjct: 424 IGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANFSIDLPEA 482
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
+V +Q+S GSR++EAQRLGR+LR K + A FY++V++DT++ Y+ RQRF
Sbjct: 483 SVAVQVSGTFGSRQEEAQRLGRLLRPKH----DGGQAHFYSVVARDTLDAEYAAHRQRF 537
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK++VG A + L+L + V+ QWK + ++ + I ++ E K+ +P
Sbjct: 216 AGKTMVGAAAMAKAKATTLILVTNTVAGRQWKRELIARTSLTEEEIGEYSGERKEIRP-- 273
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +I+ K + + ++ +++WG+++ D+
Sbjct: 274 --VTIATYQVITRRTKGEY---KHLELFDSRDWGLVIYDE 308
>gi|269837747|ref|YP_003319975.1| type III restriction protein res subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269787010|gb|ACZ39153.1| type III restriction protein res subunit [Sphaerobacter
thermophilus DSM 20745]
Length = 530
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 143/249 (57%), Gaps = 19/249 (7%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA++FR+ ++ QS +LGLTATL+RED + D+ L+GP ++ W +L++RG+
Sbjct: 293 EVHALPAEIFRQSASL-QSRRRLGLTATLVREDGRERDVFSLVGPTVFSVPWRDLERRGW 351
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
I+ V C EV ++ R+L K R + L H G+ T+V
Sbjct: 352 ISPVDCVEV------RVRPPATGAASADRILA-----AKLRVVRRLARRHA--GEPTLVV 398
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + + A + P + G T +ER + F+ ++ + +S+VA+ DLP+A
Sbjct: 399 AHRLIEVAAAARALGVPMVTGQTPAAERRALYDAFRRG-EIRCLALSRVANVGVDLPDAA 457
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQIS GSR++EAQRLGR+LR K+ A FY+LV T E+ ++ +RQRFL+
Sbjct: 458 VLIQISGAFGSRQEEAQRLGRLLRPKESG----RRAVFYSLVVPGTREVEFAARRQRFLV 513
Query: 457 NQGYSYKVI 465
+QGY Y+V+
Sbjct: 514 DQGYRYRVV 522
>gi|254231169|ref|ZP_04924496.1| DNA helicase ercc3 [Mycobacterium tuberculosis C]
gi|124600228|gb|EAY59238.1| DNA helicase ercc3 [Mycobacterium tuberculosis C]
Length = 582
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 136/237 (57%), Gaps = 8/237 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQR
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSVDAEYAAHRQR 520
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
>gi|322784714|gb|EFZ11548.1| hypothetical protein SINV_16244 [Solenopsis invicta]
Length = 111
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/83 (83%), Positives = 74/83 (89%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
DGVP AAK +VEK D EDEFGAKDYR+QM+LKPD SRPLWVAPNGHIFLESFSPVY
Sbjct: 27 DGVPDAAKNDVEKQDECAIEDEFGAKDYRSQMILKPDCSSRPLWVAPNGHIFLESFSPVY 86
Query: 196 RHAHDFLIAIAEPVCRPEHIHEV 218
+HAHDFLIAI+EPVCRPEHIHEV
Sbjct: 87 KHAHDFLIAISEPVCRPEHIHEV 109
>gi|325971054|ref|YP_004247245.1| type III restriction protein res subunit [Sphaerochaeta globus str.
Buddy]
gi|324026292|gb|ADY13051.1| type III restriction protein res subunit [Sphaerochaeta globus str.
Buddy]
Length = 553
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 143/248 (57%), Gaps = 10/248 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +F+ + +Q+ ++GLTATL+RED + ++ L+GPK ++ W+ELQ++GF
Sbjct: 311 EVHMLPAPVFK-ITAELQAVYRVGLTATLIREDGREDEVFSLVGPKRFDVPWIELQQQGF 369
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C E+ + E Y + ++ + NP K + L++ H D ++
Sbjct: 370 IAEAYCHEIRLDLPQELEIPYALANKREKYRMASENPLKLEVVKDLVSRHP--DDFILII 427
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A P I G T ++R ++ + F+ + + VSKVA+ + DLP+A+
Sbjct: 428 GQYLDQLAMIADAFGLPIITGSTPNAKREELYRAFR-DGDCRILVVSKVANFAIDLPDAS 486
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQ+S GSR +EAQRLGRILR K ++FFY++V++ + E ++ RQ+FL
Sbjct: 487 VAIQVSGTFGSRSEEAQRLGRILRPKN------RSSFFYSVVTRYSNEEEFAANRQKFLA 540
Query: 457 NQGYSYKV 464
QGYSY++
Sbjct: 541 EQGYSYEI 548
>gi|317129326|ref|YP_004095608.1| type III restriction protein res subunit [Bacillus cellulosilyticus
DSM 2522]
gi|315474274|gb|ADU30877.1| type III restriction protein res subunit [Bacillus cellulosilyticus
DSM 2522]
Length = 553
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 136/247 (55%), Gaps = 8/247 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + + +Q +LGLTAT +RED K +D+ LIGPK YE L++ G+
Sbjct: 304 EVHLLPAPLFR-ITSNLQGKRRLGLTATFVREDKKESDIYSLIGPKRYEVGIKALEENGW 362
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA+ C E P + + + +Y +R N K + ++ H I+
Sbjct: 363 IAKPICMEYKIPFTEKQWEKYFTLSKRERYRFASENEQKLSLLKRIVEKH--HDVPIIII 420
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L A ++ P I G T +SER +I +FK + T+ +S+VA+ + DLP+A
Sbjct: 421 GQYLDQLHRIARELQLPLITGETKKSERQKIYDDFK-KGNIQTLVLSRVANMAVDLPDAQ 479
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V IQIS GSR++EAQR+GR+LR KK +FYTL++ T E + RQ F+
Sbjct: 480 VAIQISGTYGSRQEEAQRIGRLLRPKKSGEP----VYFYTLITPMTQEEEVASNRQLFMH 535
Query: 457 NQGYSYK 463
QGYSYK
Sbjct: 536 EQGYSYK 542
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
+GK++VG+ +++ L+L + S++QW ++ ++ S I +TSE K+
Sbjct: 207 SGKTIVGLGVMDKIKEDTLILVPNDTSLQQWYNELLDKTSLQKSQIGLYTSEKKEVK--- 263
Query: 98 GILVTTYSMIS--HTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTY M++ H+ +S + WG+++ D+
Sbjct: 264 EVTITTYQMLTYHHSNNKSKGDFPHFSLFHQRSWGLVIYDE 304
>gi|339898776|ref|XP_001466580.2| putative DNA repair helicase [Leishmania infantum JPCM5]
gi|321398503|emb|CAM69619.2| putative DNA repair helicase [Leishmania infantum JPCM5]
Length = 1106
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 114/166 (68%), Gaps = 3/166 (1%)
Query: 302 TSKRLLLYVMNPNKYRATQYLIAYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPT 359
TS+ L L NP K TQ L+A+H++R DK I+F D + ++ +A ++ P++ T
Sbjct: 756 TSRSLRLASCNPYKLWCTQALLAFHQQRSPPDKVIIFCDYLADVRFFAHHLHLPFMDRRT 815
Query: 360 SQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRIL 419
S++ER +LQ F+ + VN I +++V D + DLP A+V+IQ+S G SRRQEAQRLGRIL
Sbjct: 816 SEAERTNLLQYFQHSDSVNAIVLTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRIL 875
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI 465
R K ++ + A+FYTLVSQDT ++S S KRQ +L +QG++Y+++
Sbjct: 876 RPKPPSL-DNTCAYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 920
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 67/93 (72%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A F+ VL ++ C LGL+ATLLREDDKI DL L+GPKLYEANWL+L
Sbjct: 606 LDEVHTALAHHFQDVLNTIKYKCVLGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTCA 665
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLL 307
GF+A V+CAEV CPM P F +EY ++++ LL
Sbjct: 666 GFLANVECAEVQCPMPPLFLQEYHDIQSTRALL 698
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A T++ +V+C + +SV QW+ +F W+ + + T++ K +P
Sbjct: 507 AGKTLTGIGAAATMQTTTIVMCINNMSVFQWQREFLRWTDLAEDEVTVCTAKVKQRPG-- 564
Query: 98 GILVTTYSMI-----SHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTYSM+ S + E+ +Q + Q WG++LLD+
Sbjct: 565 KVFITTYSMVVAKRGSTDGAAAEESRAILQAMTAQPWGLLLLDE 608
>gi|398018627|ref|XP_003862478.1| DNA repair helicase, putative [Leishmania donovani]
gi|322500708|emb|CBZ35785.1| DNA repair helicase, putative [Leishmania donovani]
Length = 1106
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 114/166 (68%), Gaps = 3/166 (1%)
Query: 302 TSKRLLLYVMNPNKYRATQYLIAYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPT 359
TS+ L L NP K TQ L+A+H++R DK I+F D + ++ +A ++ P++ T
Sbjct: 756 TSRSLRLASCNPYKLWCTQALLAFHQQRSPPDKVIIFCDYLADVRFFAHHLHLPFMDRRT 815
Query: 360 SQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRIL 419
S++ER +LQ F+ + VN I +++V D + DLP A+V+IQ+S G SRRQEAQRLGRIL
Sbjct: 816 SEAERTNLLQYFQHSDSVNAIVLTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRIL 875
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI 465
R K ++ + A+FYTLVSQDT ++S S KRQ +L +QG++Y+++
Sbjct: 876 RPKPPSL-DNTCAYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 920
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 67/93 (72%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A F+ VL ++ C LGL+ATLLREDDKI DL L+GPKLYEANWL+L
Sbjct: 606 LDEVHTALAHHFQDVLNTIKYKCVLGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTCA 665
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLL 307
GF+A V+CAEV CPM P F +EY ++++ LL
Sbjct: 666 GFLANVECAEVQCPMPPLFLQEYHDIQSTRALL 698
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A T++ +V+C + +SV QW+ +F W+ + + T++ K +P
Sbjct: 507 AGKTLTGIGAAATMQTTTIVMCINNMSVFQWQREFLRWTDLAEDEVTVCTAKVKQRPG-- 564
Query: 98 GILVTTYSMI-----SHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTYSM+ S + E+ +Q + Q WG++LLD+
Sbjct: 565 KVFITTYSMVVAKRGSTDGAAAEESRAILQAMTAQPWGLLLLDE 608
>gi|289568824|ref|ZP_06449051.1| DNA helicase ercc3 [Mycobacterium tuberculosis T17]
gi|289542578|gb|EFD46226.1| DNA helicase ercc3 [Mycobacterium tuberculosis T17]
Length = 510
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 132/233 (56%), Gaps = 8/233 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 280 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 338
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 339 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 396
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 397 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 455
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ R
Sbjct: 456 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDARVRR 504
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 188 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 245
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 246 --VTISTYQMITRHTKGEY---RHLELFDSRDWGLIIYDE 280
>gi|401416016|ref|XP_003872503.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488727|emb|CBZ23974.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1103
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 114/166 (68%), Gaps = 3/166 (1%)
Query: 302 TSKRLLLYVMNPNKYRATQYLIAYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPT 359
TS+ L L NP K TQ L+A+H++R DK I+F D + ++ +A ++ P++ T
Sbjct: 753 TSRSLRLASCNPYKLWCTQALLAFHQQRSPPDKVIIFCDYLSDVRFFAHHLHLPFMDQRT 812
Query: 360 SQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRIL 419
S++ER +LQ F+ + VN I +++V D + DLP A+V+IQ+S G SRRQEAQRLGRIL
Sbjct: 813 SEAERTNLLQYFQHSSGVNAIILTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRIL 872
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI 465
R K ++ + A+FYTLVSQDT ++S S KRQ +L +QG++Y+++
Sbjct: 873 RPKPLSL-DNTCAYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 917
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 66/93 (70%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A F+ VL ++ C LGL+ATLLREDDKI DL L+GPKLYEANWL+L +
Sbjct: 606 LDEVHTALAHHFQDVLNTIKYKCVLGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRA 665
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLL 307
GF+A V+CAEV CPM P F EY + ++ LL
Sbjct: 666 GFLANVECAEVQCPMPPLFLEEYHAIQRTRALL 698
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A T++ +V+C + +SV QW+ +F W+ + + T++ K +P
Sbjct: 507 AGKTLTGIGAAATMQTTTIVMCINNMSVFQWQREFLRWTDLAEDEVTVCTAKVKQRPG-- 564
Query: 98 GILVTTYSMISHTQKR-------SWEADQTMQWLQNQEWGIMLLDD 136
+ +TTYSM+ KR + E+ +Q + Q WG++LLD+
Sbjct: 565 KVFITTYSMV--VAKRGNADGAAAEESRAILQAMTAQPWGLLLLDE 608
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+ +G+IF+E P Y H DFLI+ EPV R +H+ +
Sbjct: 3 IGDSGNIFVEKAHPAYAHVIDFLISCCEPVSRTQHMEQ 40
>gi|389593769|ref|XP_003722133.1| putative DNA repair helicase [Leishmania major strain Friedlin]
gi|321438631|emb|CBZ12390.1| putative DNA repair helicase [Leishmania major strain Friedlin]
Length = 1106
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
Query: 302 TSKRLLLYVMNPNKYRATQYLIAYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPT 359
TS+ L L NP K Q L+A+H++R DK I+F D + ++ +A ++ P++ T
Sbjct: 756 TSRSLRLASCNPYKLWCAQALLAFHQQRSPPDKVIIFCDYLADVRFFAHHLHLPFMDQRT 815
Query: 360 SQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRIL 419
S++ER +LQ F+ + VN I +++V D + DLP A+V+IQ+S G SRRQEAQRLGRIL
Sbjct: 816 SEAERTNLLQYFQHSDGVNAIILTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRIL 875
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI 465
R K ++ + A+FYTLVSQDT ++S S KRQ +L +QG++Y+++
Sbjct: 876 RPKPPSL-DNTCAYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 920
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 67/93 (72%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A F+ VL ++ C LGL+ATLLREDDKI DL L+GPKLYEANWL+L +
Sbjct: 606 LDEVHTALAHHFQDVLNTIKYKCVLGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRA 665
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLL 307
GF+A V+CAEV CPM P F +EY + ++ LL
Sbjct: 666 GFLANVECAEVQCPMPPLFLQEYYGIQRTRALL 698
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK+L G+ A T++ +V+C + +SV QW+ +F W+ + + T++ K +P
Sbjct: 507 AGKTLTGIGAAATMQTTTIVMCINHMSVFQWQREFLRWTNLAEEEVTVCTAKVKQRPG-- 564
Query: 98 GILVTTYSMI-----SHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTYSM+ S + E+ +Q + Q WG++LLD+
Sbjct: 565 KVFITTYSMVVAKRGSADGAAAEESRAILQVMTAQPWGLLLLDE 608
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+ +G+IF+E P Y H DFLI+ EPV R +H+ +
Sbjct: 3 IGDSGNIFVEKAHPAYAHVIDFLISCCEPVSRTQHMEQ 40
>gi|389602007|ref|XP_001566408.2| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505277|emb|CAM39916.2| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1108
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 113/165 (68%), Gaps = 3/165 (1%)
Query: 303 SKRLLLYVMNPNKYRATQYLIAYHERRG--DKTIVFSDNVFALKHYAVKMNKPYIYGPTS 360
S+ L L NP K TQ L+A+H++R DK I+F D + ++ +A ++ P++ TS
Sbjct: 759 SRSLRLASCNPYKLWCTQALLAFHQQRSPPDKAIIFCDYLADVRFFAHHLHLPFMDQRTS 818
Query: 361 QSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILR 420
++ER +LQ F+ + VN I +++V D + DLP A+V+IQ+S G SRRQEAQRLGRILR
Sbjct: 819 EAERANLLQYFQHSNDVNAIILTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRILR 878
Query: 421 AKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI 465
K ++ + A+FYTLVSQDT ++S S KRQ +L +QG++Y+++
Sbjct: 879 PKPPSL-DNTCAYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 922
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 67/93 (72%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHT A F+ VL ++ C LGL+ATLLREDDKI DL L+GPKLYEANWL+L +
Sbjct: 608 LDEVHTALAHHFQDVLNTIKYKCVLGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRA 667
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLL 307
GF+A V+CAEV CPM P F +EY + ++ LL
Sbjct: 668 GFLANVECAEVQCPMPPLFLQEYRDIQRTRTLL 700
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWS--TADDSMICRFTSEAKDKPM 95
AGK+L G+ A T++ +V+C + +SV QWK +F W+ T D+ +C T++ K +P
Sbjct: 509 AGKTLTGIGAAATMQTTTIVMCINNMSVFQWKREFLRWTDLTEDEVTVC--TAKVKQRPG 566
Query: 96 GCGILVTTYSMI-----SHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ +TTYSM+ + + E+ +Q + Q WG++LLD+
Sbjct: 567 --KVFITTYSMVIAKRGNADGAAAEESRAILQAMAAQPWGLLLLDE 610
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
+ +G+IF+E P Y H DFLI+ EPV R +H+ +
Sbjct: 3 IGDSGNIFVEKAHPAYAHVIDFLISCCEPVSRTQHMEQ 40
>gi|302793636|ref|XP_002978583.1| hypothetical protein SELMODRAFT_108762 [Selaginella moellendorffii]
gi|300153932|gb|EFJ20569.1| hypothetical protein SELMODRAFT_108762 [Selaginella moellendorffii]
Length = 109
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 72/81 (88%)
Query: 218 VHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFI 277
VH +PA MF +V++I +SHCKLGLTATL+RED++I+DLNFL+GPKLY+ANWL+L K G+I
Sbjct: 1 VHVVPAHMFHKVISITKSHCKLGLTATLVREDERISDLNFLVGPKLYQANWLDLVKCGYI 60
Query: 278 ARVQCAEVWCPMSPEFYREYL 298
A VQCAEVWCPM+ EFY EYL
Sbjct: 61 ANVQCAEVWCPMTKEFYAEYL 81
>gi|340059837|emb|CCC54234.1| putative DNA repair helicase and transcription factor protein,
fragment, partial [Trypanosoma vivax Y486]
Length = 584
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 10/189 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+ ++ L + + +GLTAT +RED KI DL L+GPKL++ +W L
Sbjct: 396 MDEVHVMPAETYKESLGFINAKGVIGLTATYVREDAKIRDLFHLVGPKLFDVSWETLASS 455
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS------KRLLLYVM----NPNKYRATQYLIA 324
G++A V C E+ P++ +F EY+ +S +R+ L VM NPNK LI
Sbjct: 456 GYLANVTCVEILTPLTRQFSLEYMERSSSDSTGAHRRIPLLVMLAAANPNKMLCVMELIR 515
Query: 325 YHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384
H K +VF D++ LK Y+ +N P I G T ER+ I +F+ KVN I +S+
Sbjct: 516 RHLAESSKILVFCDHIALLKEYSKVLNAPVICGETPHRERLMIFSDFQSTSKVNVICISR 575
Query: 385 VADTSFDLP 393
V D + +LP
Sbjct: 576 VGDVTVNLP 584
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSM 82
AGK+LVG+ C V+K L+LC VSVEQWK+Q +ST S+
Sbjct: 255 AGKTLVGIMLLCKVKKPTLILCAGSVSVEQWKNQILEFSTLGCSL 299
>gi|405959468|gb|EKC25508.1| TFIIH basal transcription factor complex helicase XPB subunit
[Crassostrea gigas]
Length = 282
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 3/80 (3%)
Query: 138 VPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRH 197
+P AA ++V DD EDEFGAKDYR ++ LKPDH SRPL+VAPNGHIFLESFSPVY+H
Sbjct: 46 IPDAATRSV--DDTG-KEDEFGAKDYRTELALKPDHNSRPLFVAPNGHIFLESFSPVYKH 102
Query: 198 AHDFLIAIAEPVCRPEHIHE 217
AHDFLIAI+EPVCRPE IHE
Sbjct: 103 AHDFLIAISEPVCRPEFIHE 122
>gi|448733231|ref|ZP_21715476.1| DNA/RNA helicase, superfamily ii [Halococcus salifodinae DSM 8989]
gi|445802965|gb|EMA53265.1| DNA/RNA helicase, superfamily ii [Halococcus salifodinae DSM 8989]
Length = 645
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IP+K+FRR + H +LGL+AT +REDDK +++ LIGP + +W +L + GF
Sbjct: 400 EVHHIPSKVFRRSADLQAKH-RLGLSATPVREDDKESEIFTLIGPPIG-TDWAKLFEAGF 457
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E RE Y + +R + N K A + L+ H K +V
Sbjct: 458 VAEPEVELRYVPWGSEIDREEYASAEGHERRQVAGTNTAKLDAVRSLLDDHPDA--KALV 515
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + YA ++ P+I G T +ER ++ F+ + + + VS+V D DLP A
Sbjct: 516 FVEWLDQGREYADALDVPFISGETRHAERERLFDEFRRGER-SRLLVSRVGDEGIDLPNA 574
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V I S GGSRRQ +QR GR +R N+ Y L ++ T E + R++ R L
Sbjct: 575 EVAIMASGLGGSRRQASQRAGRTMRPAG-------NSRVYVLATRGTREEDFVRQQLRHL 627
Query: 456 INQG 459
+ +G
Sbjct: 628 VGKG 631
>gi|399574209|ref|ZP_10767969.1| DNA/RNA helicase, superfamily ii [Halogranum salarium B-1]
gi|399240717|gb|EJN61641.1| DNA/RNA helicase, superfamily ii [Halogranum salarium B-1]
Length = 683
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P++++RR + H +LGL+AT +REDD+ D+ LIGP + +W +L GF
Sbjct: 392 EVHHVPSRIYRRSADLQAKH-RLGLSATPVREDDREKDIFTLIGPPIG-TDWDKLFDAGF 449
Query: 277 IARVQCAEVWCPMSPEF-YREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P + + E+ +R +L MNP K A + L+ H K +V
Sbjct: 450 VQEPEVEIRYVPWTDDMSLNEWRSADGRERHMLAAMNPAKLDAAERLLTQHPES--KALV 507
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + +++ P+I G R Q+ Q+F+ + + T+ +S+V D DLP+A
Sbjct: 508 FVDYLDQGRFFEEELDVPFISGEMPHYRREQLFQSFR-DGDIRTLVISRVGDEGIDLPDA 566
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ AQR GR +R +A Y L ++ T E +++++ R L
Sbjct: 567 ELAIVASGLGGSRRQGAQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMRHL 619
Query: 456 INQG 459
+G
Sbjct: 620 AEKG 623
>gi|452207732|ref|YP_007487854.1| DNA repair helicase Rad25 [Natronomonas moolapensis 8.8.11]
gi|452083832|emb|CCQ37159.1| DNA repair helicase Rad25 [Natronomonas moolapensis 8.8.11]
Length = 632
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 15/260 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IP+ + RR ++ Q+ +LGLTAT +RE + ++ L+GP + +W L + G+
Sbjct: 369 EVHHIPSPVHRRSASL-QTKHRLGLTATPVRETEDQEEIYTLVGPPIG-TDWEALFEAGY 426
Query: 277 IARVQCAEVWC-P-MSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
+A + E+ C P SP EY R NP K R ++ HE RG K I
Sbjct: 427 VAEPEV-EIRCLPWASPAHREEYAASDGHGRRQAAATNPAKIREISAIL--HENRGSKAI 483
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF + + A ++ P+I G T + R ++ F+ V+TI VS+V D DLP+
Sbjct: 484 VFVEYIDQGDAIAEALSVPFISGETPHARRSRLFDRFRRG-AVDTIVVSRVGDEGIDLPD 542
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V I S GGSRRQ AQR GR +R A Y L ++ T E ++R R +
Sbjct: 543 AEVAIAASGLGGSRRQGAQRAGRTMRPVG-------KARMYVLATRGTEEEDFARNRTKH 595
Query: 455 LINQGYSYKVITKLAGMEEE 474
L +G + +A ++ E
Sbjct: 596 LAARGVRVRETEPVAVVDPE 615
>gi|448738744|ref|ZP_21720765.1| DNA/RNA helicase, superfamily ii [Halococcus thailandensis JCM
13552]
gi|445801130|gb|EMA51474.1| DNA/RNA helicase, superfamily ii [Halococcus thailandensis JCM
13552]
Length = 608
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA ++RR + H +LGL+AT +REDDK ++ LIGP + +W +L + GF
Sbjct: 368 EVHHVPAAIYRRSADLQAKH-RLGLSATPIREDDKEGEIFTLIGPPIG-TDWAKLFEAGF 425
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E R EY + +R + NP K A + L+A H KT++
Sbjct: 426 VAEPEVELRYVPWRSEEDRTEYASVEGYERRQVAGTNPAKLDAIRSLLADHADA--KTLI 483
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + Y+ ++ P+I G T +ER ++ F+ + + + VS+V D DLP A
Sbjct: 484 FVEWLDQGREYSDALDIPFISGETRYAERERLFDEFRRGER-SRLLVSRVGDEGIDLPNA 542
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V I S GGSRRQ +QR GR +R N+ Y L ++ T E ++R + R L
Sbjct: 543 EVAIVASGLGGSRRQGSQRAGRTMRPSG-------NSQMYVLATRGTREEEFARNQLRHL 595
Query: 456 INQG 459
+G
Sbjct: 596 AGKG 599
>gi|448726395|ref|ZP_21708800.1| DNA/RNA helicase, superfamily ii [Halococcus morrhuae DSM 1307]
gi|445795049|gb|EMA45585.1| DNA/RNA helicase, superfamily ii [Halococcus morrhuae DSM 1307]
Length = 608
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA ++RR + H +LGL+AT +REDDK ++ LIGP + +W +L + GF
Sbjct: 368 EVHHVPAAIYRRSADLQAKH-RLGLSATPIREDDKEGEIFTLIGPPIG-TDWAKLFEAGF 425
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E R EY + +R + NP K A + L+A H KT++
Sbjct: 426 VAEPEVELRYVPWRSEEDRTEYASVEGYERRQVAGTNPAKLDAIRSLLADHADA--KTLI 483
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + Y+ ++ P+I G T ER ++ F+ + + + VS+V D DLP A
Sbjct: 484 FVEWLDQGQEYSDALDIPFISGETRYPERERLFDEFRRGER-SRLLVSRVGDEGIDLPNA 542
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R N+ Y L ++ T E ++R + R L
Sbjct: 543 EIAIVASGLGGSRRQGSQRAGRTMRPSG-------NSQMYVLATRGTREEEFARNQLRHL 595
Query: 456 INQG 459
+G
Sbjct: 596 AGKG 599
>gi|448410539|ref|ZP_21575244.1| DNA/RNA helicase, superfamily ii [Halosimplex carlsbadense 2-9-1]
gi|445671575|gb|ELZ24162.1| DNA/RNA helicase, superfamily ii [Halosimplex carlsbadense 2-9-1]
Length = 646
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV +P+ ++RR + Q+ +LGL+A+ +REDD ++ LIGP + +W L GF
Sbjct: 361 EVQHVPSDVYRRSANL-QTRHRLGLSASPVREDDLQEEIFTLIGPPIG-TDWDALFDEGF 418
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P + + +R EY+ + +R + NP K T+ ++ H + K ++
Sbjct: 419 VAEPTVEIRYVPWTDDDHRNEYVGSEGHERRQIAASNPAKVEETRRILREHPEQ--KALI 476
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P+I G T ER + + F+ + ++T+ VS+V D DLP+A
Sbjct: 477 FVDYLDQGRELAAALDAPFISGDTPHHERARKFEQFR-DGSLDTLVVSRVGDEGIDLPDA 535
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R A Y L +Q E ++R++ R+L
Sbjct: 536 SLAIVASGLGGSRRQGTQRAGRTMRPAG-------RALMYVLATQGAREEEFARRQMRYL 588
Query: 456 INQG 459
+G
Sbjct: 589 AGKG 592
>gi|448729965|ref|ZP_21712277.1| DNA/RNA helicase, superfamily ii [Halococcus saccharolyticus DSM
5350]
gi|445794286|gb|EMA44839.1| DNA/RNA helicase, superfamily ii [Halococcus saccharolyticus DSM
5350]
Length = 634
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IP+K+FRR + H +LGL+AT +RED+K +++ LIGP + +W +L + GF
Sbjct: 389 EVHHIPSKVFRRSADLQAKH-RLGLSATPVREDNKESEIFTLIGPPIG-TDWAKLFEAGF 446
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E RE Y + +R + N K A + L+ H K +V
Sbjct: 447 VAEPEVELRYVPWGSEIDREEYASAEGHERRQVAGTNSAKLDAIRSLLDDHADA--KALV 504
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + YA + P+I G T +ER ++ F+ + I VS+V D DLP A
Sbjct: 505 FVEWLDQGREYAEALGIPFISGETRHAERERLFDEFRRGERTRLI-VSRVGDEGIDLPNA 563
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V I S GGSRRQ +QR GR +R N+ Y L ++ T E + R++ R L
Sbjct: 564 EVAIMASGLGGSRRQASQRAGRTMRPAG-------NSRVYVLATRGTREEDFVRQQLRHL 616
Query: 456 INQG 459
+G
Sbjct: 617 AGKG 620
>gi|76802734|ref|YP_330829.1| DNA repair helicase [Natronomonas pharaonis DSM 2160]
gi|76558599|emb|CAI50191.2| DNA repair helicase Rad25 [Natronomonas pharaonis DSM 2160]
Length = 624
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 125/254 (49%), Gaps = 13/254 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IP+ + RR + H +LGLTAT +RE D + L+G + NW L + G+
Sbjct: 373 EVHHIPSPVHRRSAQLQTKH-RLGLTATPVRETDDQQQIYTLVGQPIG-TNWEALFEAGY 430
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P + E +R EY ++ L NP K R ++ HE RG K IV
Sbjct: 431 VAEPEVEIRFLPWASETHRNEYGSATGHEKRQLAATNPAKIREISAIL--HENRGSKAIV 488
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + A + P+I G T + R ++ F+ +++TI VS+V D DLP+
Sbjct: 489 FVEYIEQGDQIAEALGVPFISGETPHARRSKLFGRFR-GGQLDTIVVSRVGDEGIDLPDT 547
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V I S GGSRRQ AQR GR +R A Y L ++ + E ++RKR + L
Sbjct: 548 EVAIAASGLGGSRRQGAQRAGRTMRPVG-------KARMYVLATRGSREEDFARKRTKHL 600
Query: 456 INQGYSYKVITKLA 469
+G + LA
Sbjct: 601 AARGVRVQEAEPLA 614
>gi|194390514|dbj|BAG62016.1| unnamed protein product [Homo sapiens]
Length = 161
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHE 217
++A DFL+AIAEPVCRP H+HE
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHE 115
>gi|409728397|ref|ZP_11271263.1| DNA repair helicase [Halococcus hamelinensis 100A6]
gi|448722840|ref|ZP_21705368.1| DNA repair helicase [Halococcus hamelinensis 100A6]
gi|445788507|gb|EMA39216.1| DNA repair helicase [Halococcus hamelinensis 100A6]
Length = 615
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IPA ++R+ + + Q+ +LGL+AT +REDDK A++ LIGP + +W +L + GF
Sbjct: 373 EVHHIPAAVYRKSVDL-QAKHRLGLSATPVREDDKGAEIFTLIGPPIG-TDWAKLFEAGF 430
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E R EY +R + NP K A + L+ H K +V
Sbjct: 431 VAEPEVELRFVPWGSEADRDEYASVTGHERRRVAGSNPAKLDAIRSLLDEHADA--KALV 488
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + YA + P+I G T ER ++ F+ + + VS+V D DLP A
Sbjct: 489 FVEWLDQGESYAEALGIPFISGDTPHPERERLFDEFRRGERARLV-VSRVGDEGIDLPNA 547
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V + S GGSRRQ +QR GR +R ++ Y L ++ T E ++R++ R L
Sbjct: 548 EVAVVASGLGGSRRQASQRAGRTMRPAG-------SSRLYVLATRGTREEEFARQQLRHL 600
Query: 456 INQG 459
+G
Sbjct: 601 AGKG 604
>gi|10580909|gb|AAG19725.1| putative DNA helicase [Halobacterium sp. NRC-1]
Length = 324
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 15/245 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IPA++ RR ++ QS +LGLTAT +REDDK AD+ L+G + +W L GF
Sbjct: 81 EVHHIPAEVARRSASL-QSKHRLGLTATPVREDDKEADIYTLVG-RPIGTDWDALFDAGF 138
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD-KTI 334
+A + + P + R EY R L NP K ++L+ H GD + +
Sbjct: 139 VAEPEVEIRYVPWRDDDDRYEYAAASGHTRRRLAAENPAKEAEIEHLVDQH---GDTQAL 195
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF D + + A +++ P++ G T S R F+ ++ + VS++ D DLP+
Sbjct: 196 VFVDYLSQGERIAERLDAPFVNGETPHSRRETHFDQFRTG-ALDALVVSRIGDEGIDLPD 254
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A + S GGSRRQ AQR GR +R + + L ++ T E ++R R R
Sbjct: 255 AEFAVVASGLGGSRRQGAQRAGRTMRPGS-------QSLLFVLATRGTEEEDHARSRMRH 307
Query: 455 LINQG 459
L +G
Sbjct: 308 LSTKG 312
>gi|345004916|ref|YP_004807769.1| type III restriction protein res subunit [halophilic archaeon DL31]
gi|344320542|gb|AEN05396.1| type III restriction protein res subunit [halophilic archaeon DL31]
Length = 630
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 121/244 (49%), Gaps = 14/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H +PA +FRR + QS +LGLTAT +RE D ++ LIGP L +W +L GF
Sbjct: 361 EAHHVPAPVFRRSAAL-QSRHRLGLTATPVRESDDEKEIYTLIGPPLG-TDWSQLFDAGF 418
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P EF E+ +R +L MNP K TQ L+A E+ G K +V
Sbjct: 419 VAEPEVELRYLPWDDEFAENEWASAHGRERHILAGMNPRKIEETQKLLA--EQDG-KALV 475
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + A ++ P+I G T R + + F+ + + VS+V D DLP A
Sbjct: 476 FVDYLDQGDAIAEAIDAPFISGETPHHRREALFEAFRTGEE-EALVVSRVGDEGIDLPNA 534
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ AQR GR +R A L + T E ++R++ R L
Sbjct: 535 ELAIVASGLGGSRRQGAQRAGRTMRPVG-------RAEVVVLATHGTREEEFARRQMRHL 587
Query: 456 INQG 459
+G
Sbjct: 588 AEKG 591
>gi|313126222|ref|YP_004036492.1| DNA/RNA helicase, superfamily ii [Halogeometricum borinquense DSM
11551]
gi|448286064|ref|ZP_21477299.1| DNA/RNA helicase, superfamily ii [Halogeometricum borinquense DSM
11551]
gi|312292587|gb|ADQ67047.1| DNA/RNA helicase, superfamily II [Halogeometricum borinquense DSM
11551]
gi|445575115|gb|ELY29594.1| DNA/RNA helicase, superfamily ii [Halogeometricum borinquense DSM
11551]
Length = 643
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P++++RR + Q+ +LGL+AT +REDDK ++ LIGP + +W +L + G+
Sbjct: 402 EVHHVPSRIYRRSADL-QAKHRLGLSATPIREDDKEKEIFTLIGPPIG-TDWSKLFEAGY 459
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P + + R E+ +R L MNP K T+ L+ H + K +V
Sbjct: 460 VQEPEVEIRYVPWADDTARNEWSSADGRERRQLASMNPQKIAETRRLLRQHPK--SKALV 517
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P+I G R ++ + F+ ++ T+ +S+V D DLP A
Sbjct: 518 FVDYLDQGEELAEALDVPFISGEMRHHHRERLFRQFR-EGELRTLVISRVGDEGIDLPNA 576
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ AQR GR +R GA+ Y L ++ T E +++++ R L
Sbjct: 577 ELAIVASGLGGSRRQGAQRAGRTMRPAGGAL-------VYVLATRGTSEEDFAQRQMRHL 629
Query: 456 INQG 459
+G
Sbjct: 630 AEKG 633
>gi|354610899|ref|ZP_09028855.1| type III restriction protein res subunit [Halobacterium sp. DL1]
gi|353195719|gb|EHB61221.1| type III restriction protein res subunit [Halobacterium sp. DL1]
Length = 599
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++FRR + QS +LGL+AT +REDDK D+ LIGP + +W L G+
Sbjct: 357 EAHHIPSEVFRRSADL-QSKHRLGLSATPVREDDKEMDIYTLIGPPIG-TDWDALFDAGY 414
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P + R EY R L NP K ++L+ H + + +V
Sbjct: 415 VAEPEVEIRYVPWLDDDARYEYASESGHTRRRLAAENPAKDEEARHLLGQHPDK--QALV 472
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER + F+ ++T+ VS++ D DLP+A
Sbjct: 473 FVDYLEQGRRLAEALDAPFVSGETRHVERQSLFDQFRTG-ALDTLVVSRIGDEGIDLPDA 531
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ AQR GR +R + + L ++ T E +R R R L
Sbjct: 532 ELAIVASGLGGSRRQGAQRAGRTMRPGG-------QSLLFVLATRGTEEEDDARNRMRHL 584
Query: 456 INQG 459
+G
Sbjct: 585 AAKG 588
>gi|16554496|ref|NP_444220.1| helicase [Halobacterium sp. NRC-1]
Length = 524
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 15/245 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IPA++ RR ++ QS +LGLTAT +REDDK AD+ L+G + +W L GF
Sbjct: 281 EVHHIPAEVARRSASL-QSKHRLGLTATPVREDDKEADIYTLVG-RPIGTDWDALFDAGF 338
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD-KTI 334
+A + + P + R EY R L NP K ++L+ H GD + +
Sbjct: 339 VAEPEVEIRYVPWRDDDDRYEYAAASGHTRRRLAAENPAKEAEIEHLVDQH---GDTQAL 395
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF D + + A +++ P++ G T S R F+ ++ + VS++ D DLP+
Sbjct: 396 VFVDYLSQGERIAERLDAPFVNGETPHSRRETHFDQFRTG-ALDALVVSRIGDEGIDLPD 454
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A + S GGSRRQ AQR GR +R + + L ++ T E ++R R R
Sbjct: 455 AEFAVVASGLGGSRRQGAQRAGRTMRPGS-------QSLLFVLATRGTEEEDHARSRMRH 507
Query: 455 LINQG 459
L +G
Sbjct: 508 LSTKG 512
>gi|169236157|ref|YP_001689357.1| DNA repair helicase [Halobacterium salinarum R1]
gi|167727223|emb|CAP14009.1| DNA repair helicase Rad25 [Halobacterium salinarum R1]
Length = 600
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 15/245 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IPA++ RR ++ QS +LGLTAT +REDDK AD+ L+G + +W L GF
Sbjct: 357 EVHHIPAEVARRSASL-QSKHRLGLTATPVREDDKEADIYTLVG-RPIGTDWDALFDAGF 414
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD-KTI 334
+A + + P + R EY R L NP K ++L+ H GD + +
Sbjct: 415 VAEPEVEIRYVPWRDDDDRYEYAAASGHTRRRLAAENPAKEAEIEHLVDQH---GDTQAL 471
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF D + + A +++ P++ G T S R F+ ++ + VS++ D DLP+
Sbjct: 472 VFVDYLSQGERIAERLDAPFVNGETPHSRRETHFDQFRTG-ALDALVVSRIGDEGIDLPD 530
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A + S GGSRRQ AQR GR +R + + L ++ T E ++R R R
Sbjct: 531 AEFAVVASGLGGSRRQGAQRAGRTMRPGS-------QSLLFVLATRGTEEEDHARSRMRH 583
Query: 455 LINQG 459
L +G
Sbjct: 584 LSTKG 588
>gi|424814642|ref|ZP_18239820.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalina sp.
J07AB43]
gi|339758258|gb|EGQ43515.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalina sp.
J07AB43]
Length = 549
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 13/249 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IP+K+FR+ ++ QS ++GL+A+ +RED K D+ LIG ++ +W K G
Sbjct: 310 EVHHIPSKLFRKTASL-QSTRRIGLSASPVREDSKEKDIFALIGQEIG-GDWARFFKEGH 367
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + +++R EY K+ ++ NP K + L+ +H+ +KTI+
Sbjct: 368 VVKPDVEIQLVEWASDYHRHEYEQASGIKKAIIASKNPAKKENLEELLDHHDE--EKTII 425
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + N P+I G T ER + ++F+ N ++NTI VS++ D DLP+
Sbjct: 426 FCDWIDQGEEIEKEYNVPFISGETDFEEREEYFEDFR-NDEMNTIMVSRIGDEGLDLPDT 484
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V I +S GGSRRQ QR GR++R +A Y + ++ + E + +++ L
Sbjct: 485 EVGIIMSGQGGSRRQATQRAGRVMRPFG-------DAQVYMIATKGSNEEDFVKRQVELL 537
Query: 456 INQGYSYKV 464
+G V
Sbjct: 538 KEKGVPVSV 546
>gi|321466391|gb|EFX77387.1| hypothetical protein DAPPUDRAFT_247765 [Daphnia pulex]
Length = 206
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 68/99 (68%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AG+SLV V ACC V K AL+LC+S + VE WK QFK+WS AD+ MICRFT A D P+
Sbjct: 60 AGRSLVVVAACCKVHKMALILCSSELVVEYWKAQFKMWSIADNGMICRFTLNANDNPLAS 119
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
IL+TTY MI+H S + + WLQ QEWGIM+ D+
Sbjct: 120 KILITTYKMITHQNSCSSMEFRRIMWLQQQEWGIMVFDE 158
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEA 266
EVH I M VLTIVQ+ C LGL L ++ I DLN LIGPKLYEA
Sbjct: 158 EVHAISTDMLDSVLTIVQAPCNLGLIP--LSSENLIKDLNILIGPKLYEA 205
>gi|448373607|ref|ZP_21557693.1| type III restriction protein res subunit [Halovivax asiaticus JCM
14624]
gi|445661559|gb|ELZ14342.1| type III restriction protein res subunit [Halovivax asiaticus JCM
14624]
Length = 638
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 12/247 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ ++RR T +QS +LGL+A+ +RED++ A++ L+GP + +W L GF
Sbjct: 385 EVHHVPSDVYRRA-THLQSRYRLGLSASPIREDERQAEIFTLVGPPIG-TDWDALFDAGF 442
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A + + P + E + +R + NP K + L+A H + ++F
Sbjct: 443 VAEPELEIRYVPWADEAGNAHAAADGRERYRIAAENPAKIHEVRTLLAAHP--SGQALIF 500
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + + + ++ P++ G T ER ++L F+ + + VS+V D DLP A+
Sbjct: 501 VEYLDQGRELSDALSIPFLSGETPHHERQRLLDEFRAG-ECQQLLVSRVGDEGLDLPTAD 559
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ I S GGSRRQ QR GR +R GA+ Y L ++ + E ++R++ + L
Sbjct: 560 LAIIASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGSREEDFARRQLQHLG 612
Query: 457 NQGYSYK 463
+G S +
Sbjct: 613 RKGISVR 619
>gi|433638605|ref|YP_007284365.1| DNA/RNA helicase, superfamily II [Halovivax ruber XH-70]
gi|433290409|gb|AGB16232.1| DNA/RNA helicase, superfamily II [Halovivax ruber XH-70]
Length = 637
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 129/247 (52%), Gaps = 12/247 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ ++RR T +QS +LGL+A+ +RED++ A++ L+GP + +W L GF
Sbjct: 385 EVHHVPSDVYRRA-THLQSRYRLGLSASPIREDERQAEIFTLVGPPIG-TDWDALFDAGF 442
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A + + P + E + +R + NP K + L+A H + ++F
Sbjct: 443 VAEPELEIRYVPWADEAGNAHAAADGRERYRIAAENPAKIHEVRTLLAAHP--SGQALIF 500
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ + + + ++ P++ G T ER ++L+ F+ + + VS+V D DLP A+
Sbjct: 501 VEYLDQGRELSDALSIPFLSGETPHHERQRLLEAFRAGER-QQLIVSRVGDEGLDLPTAD 559
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
+ I S GGSRRQ QR GR +R GA+ Y L ++ + E ++R++ + L
Sbjct: 560 LAIIASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGSREEDFARRQLQHLG 612
Query: 457 NQGYSYK 463
+G S +
Sbjct: 613 RKGISVR 619
>gi|448414419|ref|ZP_21577488.1| DNA/RNA helicase, superfamily ii [Halosarcina pallida JCM 14848]
gi|445681985|gb|ELZ34409.1| DNA/RNA helicase, superfamily ii [Halosarcina pallida JCM 14848]
Length = 707
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P++++RR + H +LGL+AT +REDDK ++ LIGP + +W +L + G+
Sbjct: 466 EVHHVPSRIYRRSADLQAKH-RLGLSATPIREDDKEKEIFTLIGPPIG-TDWSKLFEAGY 523
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P + + R E+ +R L MN K T+ L+ H K +V
Sbjct: 524 VQEPEVEIRYVPWADDTARNEWSSADGRERHQLAAMNSQKIAETRRLLRQHPE--SKALV 581
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G R ++ + F+ K+ T+ +S+V D DLP A
Sbjct: 582 FVDYLDQGEDIAEALDVPFVSGEMRHHHRERLFRQFR-EGKLRTLVISRVGDEGIDLPNA 640
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R NA Y L ++ T E +++++ R L
Sbjct: 641 ELAVVASGLGGSRRQGAQRAGRTMRPAG-------NALVYVLATRGTSEEDFAQRQMRHL 693
Query: 456 INQG 459
+G
Sbjct: 694 AEKG 697
>gi|257389185|ref|YP_003178958.1| type III restriction protein res subunit [Halomicrobium mukohataei
DSM 12286]
gi|257171492|gb|ACV49251.1| type III restriction protein res subunit [Halomicrobium mukohataei
DSM 12286]
Length = 630
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV IPA + RR + H +LGLTAT +REDDK ++ L+GP + +W L GF
Sbjct: 374 EVQHIPADVARRSARLQGKH-RLGLTATPVREDDKEEEIFTLVGPPIG-TDWSALFDAGF 431
Query: 277 IARVQCAEVWCPMSP-EFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + P S E EY+ R NP K ++L+ H K +V
Sbjct: 432 VQEPEVQIRQIPWSDDEVADEYVSAVGHGRRQTAATNPAKIDEIRHLLTEHPHA--KALV 489
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + A +++ P+I G T +ER ++ F+ N + +T+ +S+V D DLP+A
Sbjct: 490 FVEYLDQGEAIAAELDVPFISGETRHAERERLFDEFRRNER-DTLVISRVGDEGIDLPDA 548
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ AQR GR +R +A Y L ++ T E + R++ R L
Sbjct: 549 ELAIVASGLGGSRRQGAQRAGRTMRPVG-------DAQLYLLATRGTEEEDFVRQQMRHL 601
Query: 456 INQG 459
++G
Sbjct: 602 ASKG 605
>gi|397774973|ref|YP_006542519.1| DNA/RNA helicase, superfamily ii [Natrinema sp. J7-2]
gi|397684066|gb|AFO58443.1| DNA/RNA helicase, superfamily ii [Natrinema sp. J7-2]
Length = 635
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 130/257 (50%), Gaps = 16/257 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H A ++R I QS +LGL+AT +RE D ++ LIGP + +W L G+
Sbjct: 393 ECHHAVASTWKRFREI-QSKARLGLSATPVREADDPKEIYTLIGPPIG-TDWGSLFAEGW 450
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + V P + + RE Y SKRL+ NP K + L+ H R KT++
Sbjct: 451 VEKPDVEIVSVPWASDTARERYQRASGSKRLIEAARNPKKSSVIKSLLKEH--RSQKTLI 508
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + K ++N P++YG T ER QI F+ +++T+ +S++ D DLP+A
Sbjct: 509 FVDWIKQGKELKDELNLPFVYGDTGHKEREQIYDRFR-EGEIDTLIISRIGDEGIDLPDA 567
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V I S+ G SR Q QR GR +R +A Y ++++ + E + R+ ++L
Sbjct: 568 EVAILASTMGSSRSQTGQRAGRTMRPLG-------DAKVYIVLTRGSGEEDWGRESTQYL 620
Query: 456 INQGYSYKVITKLAGME 472
+G + +TK + +E
Sbjct: 621 AEKGIN---VTKTSWVE 634
>gi|389847266|ref|YP_006349505.1| DNA repair helicase [Haloferax mediterranei ATCC 33500]
gi|448614789|ref|ZP_21663817.1| putative DNA repair helicase [Haloferax mediterranei ATCC 33500]
gi|388244572|gb|AFK19518.1| putative DNA repair helicase [Haloferax mediterranei ATCC 33500]
gi|445752876|gb|EMA04295.1| putative DNA repair helicase [Haloferax mediterranei ATCC 33500]
Length = 718
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 447 EAHHIPSRVFQRSANL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGY 504
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H KT+V
Sbjct: 505 VQEPEVEIRYVGWGDDMARNEWAASDGRERYMLAAMNPGKIFEIRRLRARHA--DSKTLV 562
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + K + ++ P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 563 FVDYLDQGKEISEALDVPFVSGETRHHRREAYFEAFR-DGDLDTLVISRIGDEGIDLPNA 621
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 622 ELAIVASGLGGSRRQGSQRAGRTMRPAG-------SALMYVLATRGTSEEDFAQRQMQHL 674
Query: 456 INQG 459
+G
Sbjct: 675 AGKG 678
>gi|448608861|ref|ZP_21660140.1| putative DNA repair helicase [Haloferax mucosum ATCC BAA-1512]
gi|445747238|gb|ELZ98694.1| putative DNA repair helicase [Haloferax mucosum ATCC BAA-1512]
Length = 708
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 432 EAHHIPSRVFQRSANL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWSKLFDAGY 489
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + S + R E+ +R +L MNP K + L A H KT+V
Sbjct: 490 VQEPEIEIRYVGWSDDMARNEWAASDGRERHMLAAMNPGKIFEIRRLRARHA--DSKTLV 547
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 548 FVDYLDQGETISEALDVPFVSGETRHHRREAYFEAFR-DDDLDTLVISRIGDEGIDLPNA 606
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 607 ELAIVASGLGGSRRQGSQRAGRTMRPAG-------SALMYVLATRGTSEEDFAQRQMQHL 659
Query: 456 INQG 459
+G
Sbjct: 660 AGKG 663
>gi|284176145|ref|YP_003406422.1| type III restriction protein res subunit [Haloterrigena turkmenica
DSM 5511]
gi|284017802|gb|ADB63749.1| type III restriction protein res subunit [Haloterrigena turkmenica
DSM 5511]
Length = 666
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 391 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQQEIFTLVGPPIG-TDWEALFEAGF 448
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K +V
Sbjct: 449 VAEPELEIRYVPWGDDEQGNAYASADGQEKYRIAAKNRGKVDEVRYLLSAHP--DSKALV 506
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + K + ++ P++ G T ER ++L F+ N + + + VS+V D DLP A
Sbjct: 507 FVDYLEQGKDLSAALDVPFLSGETPHHERRRLLDEFRRNER-DLLIVSRVGDEGIDLPTA 565
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 566 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 618
Query: 456 INQGYSYK 463
+G + +
Sbjct: 619 GRKGMTIR 626
>gi|448591575|ref|ZP_21651063.1| DNA repair helicase Rad25 [Haloferax elongans ATCC BAA-1513]
gi|445733549|gb|ELZ85118.1| DNA repair helicase Rad25 [Haloferax elongans ATCC BAA-1513]
Length = 717
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ L+GP + +W +L G+
Sbjct: 425 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLVGPPIG-TDWGKLFDAGY 482
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + + R E+ +R +L MNP K + L A H KT++
Sbjct: 483 VQEPEVEIRYVGWADDMARNEWASSDGRERHMLAAMNPAKVFEARRLRARHPDS--KTLI 540
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T R ++F+ + ++T+ +S++ D DLP A
Sbjct: 541 FVDYLDQGEEIADALDVPFVSGETRHHHREGYFKSFR-DGDLDTLVISRIGDEGIDLPNA 599
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 600 ELAIVASGLGGSRRQGSQRAGRTMRPAG-------SALVYVLATRGTSEEDFAQRQMQHL 652
Query: 456 INQG 459
+G
Sbjct: 653 AGKG 656
>gi|433427155|ref|ZP_20407000.1| DNA repair helicase Rad25 [Haloferax sp. BAB2207]
gi|448570486|ref|ZP_21639316.1| DNA repair helicase Rad25 [Haloferax lucentense DSM 14919]
gi|448595446|ref|ZP_21653149.1| DNA repair helicase Rad25 [Haloferax alexandrinus JCM 10717]
gi|432196513|gb|ELK52962.1| DNA repair helicase Rad25 [Haloferax sp. BAB2207]
gi|445723133|gb|ELZ74780.1| DNA repair helicase Rad25 [Haloferax lucentense DSM 14919]
gi|445742900|gb|ELZ94390.1| DNA repair helicase Rad25 [Haloferax alexandrinus JCM 10717]
Length = 695
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 415 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGY 472
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H KT+V
Sbjct: 473 VQEPEVEIRYVGWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHA--DSKTLV 530
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 531 FVDYLDQGEAIAEALDVPFVSGETRHHRREAYFEAFR-DGDLDTLVISRIGDEGIDLPNA 589
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 590 GLAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMQHL 642
Query: 456 INQG 459
+G
Sbjct: 643 AGKG 646
>gi|292655869|ref|YP_003535766.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
gi|448289858|ref|ZP_21481020.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
gi|291370479|gb|ADE02706.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
gi|445581040|gb|ELY35404.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
Length = 695
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 415 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGY 472
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H KT+V
Sbjct: 473 VQEPEVEIRYVGWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHA--DSKTLV 530
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 531 FVDYLDQGEAIAEALDVPFVSGETRHHRREAYFEAFR-DGDLDTLVISRIGDEGIDLPNA 589
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 590 GLAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMQHL 642
Query: 456 INQG 459
+G
Sbjct: 643 AGKG 646
>gi|448585090|ref|ZP_21647699.1| DNA repair helicase Rad25 [Haloferax gibbonsii ATCC 33959]
gi|445727429|gb|ELZ79042.1| DNA repair helicase Rad25 [Haloferax gibbonsii ATCC 33959]
Length = 680
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 409 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGY 466
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H KT+V
Sbjct: 467 VQEPEVEIRYVGWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHADS--KTLV 524
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 525 FVDYLDQGEAISEALDVPFVSGETRHHRREAYFEAFR-DGDLDTLVISRIGDEGIDLPNA 583
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 584 GLAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMQHL 636
Query: 456 INQG 459
+G
Sbjct: 637 AGKG 640
>gi|448393729|ref|ZP_21567788.1| type III restriction protein res subunit [Haloterrigena salina JCM
13891]
gi|445663332|gb|ELZ16084.1| type III restriction protein res subunit [Haloterrigena salina JCM
13891]
Length = 659
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 387 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQQEIFTLVGPPIG-TDWEALFEAGF 444
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K +V
Sbjct: 445 VAEPELEIRYVPWGDDEQGNAYASADGQEKYRIAAKNRGKVDEVRYLLSAHP--DSKALV 502
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + K + ++ P++ G T ER ++L F+ N + + + VS+V D DLP A
Sbjct: 503 FVDYLEQGKELSSALDVPFLSGETPHHERRRLLDEFRRNER-DLLIVSRVGDEGIDLPTA 561
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 562 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 614
Query: 456 INQGYSYK 463
+G + +
Sbjct: 615 GRKGMTIR 622
>gi|448576276|ref|ZP_21642319.1| DNA repair helicase Rad25 [Haloferax larsenii JCM 13917]
gi|445729956|gb|ELZ81550.1| DNA repair helicase Rad25 [Haloferax larsenii JCM 13917]
Length = 661
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ L+GP + +W +L G+
Sbjct: 382 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLVGPPI-GTDWGKLFDAGY 439
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + + R E+ +R +L MNP K + L A H KT++
Sbjct: 440 VQEPEVEIRYVGWADDMARNEWASSDGRERHMLAAMNPAKVFEARRLRARHP--DSKTLI 497
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T R ++F+ + ++T+ +S++ D DLP A
Sbjct: 498 FVDYLDQGEEIADALDVPFVSGETRHHHREGYFKSFR-DGDLDTLVISRIGDEGIDLPNA 556
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 557 ELAIVASGLGGSRRQGSQRAGRTMRPAG-------SALVYVLATRGTSEEDFAQRQMQHL 609
Query: 456 INQG 459
+G
Sbjct: 610 AGKG 613
>gi|448562552|ref|ZP_21635510.1| DNA repair helicase Rad25 [Haloferax prahovense DSM 18310]
gi|445718870|gb|ELZ70554.1| DNA repair helicase Rad25 [Haloferax prahovense DSM 18310]
Length = 680
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 409 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGY 466
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H KT+V
Sbjct: 467 VQEPEVEIRYVGWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHADS--KTLV 524
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 525 FVDYLDQGEAISEALDVPFVSGETRHHRREAYFEAFR-DGDLDTLVISRIGDEGIDLPNA 583
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 584 GLAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMQHL 636
Query: 456 INQG 459
+G
Sbjct: 637 AGKG 640
>gi|448624489|ref|ZP_21670437.1| DNA repair helicase Rad25 [Haloferax denitrificans ATCC 35960]
gi|445749694|gb|EMA01136.1| DNA repair helicase Rad25 [Haloferax denitrificans ATCC 35960]
Length = 706
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 430 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGY 487
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H KT+V
Sbjct: 488 VQEPEVEIRYVEWGSDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHADS--KTLV 545
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T R + F+ ++T+ +S++ D DLP A
Sbjct: 546 FVDYLDQGEAISEALDVPFVSGETRHHRREAYFEAFRTG-DLDTLVISRIGDEGIDLPNA 604
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 605 GLAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMQHL 657
Query: 456 INQG 459
+G
Sbjct: 658 AGKG 661
>gi|336254456|ref|YP_004597563.1| type III restriction protein res subunit [Halopiger xanaduensis
SH-6]
gi|335338445|gb|AEH37684.1| type III restriction protein res subunit [Halopiger xanaduensis
SH-6]
Length = 654
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 13/251 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 376 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQKEIFTLVGPPIG-TDWQALFDAGF 433
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P + R Y+ + ++ + N K +YL++ H K +V
Sbjct: 434 VAEPELEIRYVPWGDDEQRNAYVSAEGREKYRIAAENRGKVDEIRYLLSAHP--DSKALV 491
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P+I G T ER ++ F+ N + + + +S+V D DLP A
Sbjct: 492 FVDYLEQGRELSDALDAPFISGETRHHERRRLFDEFRRNER-DLLVISRVGDEGIDLPTA 550
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 551 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARRQLQHL 603
Query: 456 INQGYSYKVIT 466
+G + + T
Sbjct: 604 GRKGMTVREQT 614
>gi|448604599|ref|ZP_21657766.1| DNA repair helicase Rad25 [Haloferax sulfurifontis ATCC BAA-897]
gi|445744008|gb|ELZ95488.1| DNA repair helicase Rad25 [Haloferax sulfurifontis ATCC BAA-897]
Length = 709
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 433 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGY 490
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H KT+V
Sbjct: 491 VQEPEVEIRYVEWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHADS--KTLV 548
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 549 FVDYLDQGEAISEALDVPFVSGETRHHRREAYFEAFR-DGDLDTLVISRIGDEGIDLPNA 607
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 608 GLAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMQHL 660
Query: 456 INQG 459
+G
Sbjct: 661 AGKG 664
>gi|383625406|ref|ZP_09949812.1| type III restriction protein res subunit [Halobiforma lacisalsi
AJ5]
gi|448700385|ref|ZP_21699493.1| type III restriction protein res subunit [Halobiforma lacisalsi
AJ5]
gi|445779925|gb|EMA30840.1| type III restriction protein res subunit [Halobiforma lacisalsi
AJ5]
Length = 651
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 397 ECQHVPSDVYRRS-THLQSQHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWQALFDAGF 454
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P + R Y + ++ + N K ++L+ H K +V
Sbjct: 455 VAEPELEIRYVPWGDDEQRNAYASAEGQEKYRIAARNRGKVDEVRFLLRDH--HDAKALV 512
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L F+ N + + + VS+V D DLP A
Sbjct: 513 FVDYLAQGRELAEALDAPFLSGETPHHERRRLLDEFRRNER-DLLIVSRVGDEGIDLPTA 571
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ + E ++R++ + L
Sbjct: 572 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGSREEEFARRQLQHL 624
Query: 456 INQGYSYK 463
+G + +
Sbjct: 625 GRKGMTVR 632
>gi|307108852|gb|EFN57091.1| hypothetical protein CHLNCDRAFT_57434 [Chlorella variabilis]
Length = 818
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 59/70 (84%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VL IV++HCKLGLTATL+RED I DLNFLIGPKLYEANWL+L +
Sbjct: 591 LDEVHVVPAAMFRKVLGIVKAHCKLGLTATLVREDSLIGDLNFLIGPKLYEANWLDLTRG 650
Query: 275 GFIARVQCAE 284
G IA VQCAE
Sbjct: 651 GHIASVQCAE 660
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 77/113 (68%), Gaps = 3/113 (2%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG 96
AGKSLVGV+A ++K L LC +GVSV+QWK+QF++W+ +CRFTS+ ++ G
Sbjct: 493 GAGKSLVGVSAAARIKKGCLCLCTNGVSVDQWKYQFEMWTNVPKDQVCRFTSQTREWFEG 552
Query: 97 -CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G+ +TTY+M++ T +RS E ++ M + ++EWG++LLD+ VP A + V
Sbjct: 553 PTGVCITTYTMVAFTGRRSTEGERIMSQIMSREWGLLLLDEVHVVPAAMFRKV 605
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKL---AGME--EE 474
RA + EE++AFFYTLV+ DT E+ +S KRQ+FLI+QGYSYKVI L AG E +
Sbjct: 664 RAGRAGAGEEFDAFFYTLVTLDTQEVYFSAKRQQFLIDQGYSYKVIPHLLEAAGAEGPDG 723
Query: 475 RGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG----GVSGGFKRSGGTMASLSGAD 530
G+ S+ +EQ +L +LA ++ D EE + G +R G MA+LSGA
Sbjct: 724 GGLLLSSHEEQLDVLAAILAVTDADLAEEETDDKDDIANLGKKSATRRVVGDMAALSGAA 783
Query: 531 DAVYHE 536
Y E
Sbjct: 784 GMRYME 789
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 57/106 (53%), Gaps = 18/106 (16%)
Query: 158 FGAKD--YR--AQMVLKPDH--------------KSRPLWVAPNGHIFLESFSPVYRHAH 199
GA D YR + LKPDH + PLWV P+ +FLE+FSPVY+ A+
Sbjct: 201 LGAADEEYRDFTSLRLKPDHFNRRAGAGLGGGGDRGGPLWVCPDCRVFLETFSPVYKQAY 260
Query: 200 DFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATL 245
DFLIAIAEPV RPE IHE P ++ V ++ +G+ L
Sbjct: 261 DFLIAIAEPVSRPEFIHEYQLTPHSLYAAVSIGLEMGTIVGVLGRL 306
>gi|448539634|ref|ZP_21623100.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-646]
gi|448548854|ref|ZP_21627747.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-645]
gi|448555925|ref|ZP_21631783.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-644]
gi|445710376|gb|ELZ62191.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-646]
gi|445713947|gb|ELZ65719.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-645]
gi|445717210|gb|ELZ68930.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-644]
Length = 699
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+++F+R + QS +LGL+AT +REDDK A++ LIGP + +W +L G+
Sbjct: 415 EAHHIPSRVFQRSADL-QSKHRLGLSATPIREDDKEAEIFTLIGPPI-GTDWGKLFDAGY 472
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + + R E+ +R +L MNP K + L A H K +V
Sbjct: 473 VQEPEVEIRYVGWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHA--DSKALV 530
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A + P++ G T R + F+ + ++T+ +S++ D DLP A
Sbjct: 531 FVDYLDQGEAIAEALGVPFVSGETRHHRREAYFEAFR-DGDLDTLVISRIGDEGIDLPNA 589
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ +QR GR +R +A Y L ++ T E +++++ + L
Sbjct: 590 GLAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGTSEEDFAQRQMQHL 642
Query: 456 INQG 459
+G
Sbjct: 643 AGKG 646
>gi|448362999|ref|ZP_21551603.1| type III restriction protein res subunit [Natrialba asiatica DSM
12278]
gi|445647621|gb|ELZ00595.1| type III restriction protein res subunit [Natrialba asiatica DSM
12278]
Length = 665
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 416 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWQALFDDGF 473
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y + +R + N K +YL+A K ++
Sbjct: 474 VAEPELEIRYVPWGDDEQQNAYASAEGRERYRIAAQNRGKIDEIRYLLAAEP--NSKALI 531
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + A ++ P++ G T ER ++L F+ + + + + VS+V D DLP A
Sbjct: 532 FVDYLDQGGELATALDVPFLSGETPHHERRRLLDEFRRDER-DLLIVSRVGDEGIDLPTA 590
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 591 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARRQLQHL 643
Query: 456 INQGYSYK 463
+G + +
Sbjct: 644 GRKGMTVR 651
>gi|300710310|ref|YP_003736124.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
gi|448294636|ref|ZP_21484715.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
gi|299123993|gb|ADJ14332.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
gi|445586313|gb|ELY40595.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
Length = 599
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H IP+ +FRR + QS +LGL+AT +RE D ++ LIGP + +W L + G+
Sbjct: 357 EAHHIPSPVFRRSADL-QSKHRLGLSATPVRESDDEVEIFTLIGPPIG-TDWSALFEAGY 414
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + P E EY +R + NP K + L+ H G+KT++
Sbjct: 415 VMEPDVEIRYVPWRNEAAESEYASAVGHERRQVAASNPAKLDEIRRLLEAHA--GEKTLI 472
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + YA + P++ G T ++R ++L F+ + + VS+V D DLP A
Sbjct: 473 FVDWIDQGEAYAEDLEIPFLSGQTRYAKRERLLSEFRHGTR-EVLLVSRVGDEGIDLPAA 531
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
V I S GGSRRQ +QR GR +R GA Y L ++ T E + R + R L
Sbjct: 532 TVAIVASGLGGSRRQGSQRAGRTMRPVGGAQ-------VYMLATRGTEEEEFVRDQLRHL 584
Query: 456 INQG 459
+G
Sbjct: 585 QRKG 588
>gi|148508019|gb|ABQ75817.1| DNA repair helicase [uncultured haloarchaeon]
Length = 259
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IP+K+FRR T+ H +LGL+AT +RED K +++ L+GP + +W EL + G
Sbjct: 20 EVHHIPSKVFRRSTTLQGKH-RLGLSATPVREDKKESEIFTLVGPPIG-IDWSELIEAGH 77
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ Q + + + E+ ++ L NP K L+A H + ++
Sbjct: 78 VREPQVEIRYLSWQDDLAQNEWANADGRQKRRLAAENPEKITHISKLLADHA--SAQVLI 135
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + K+ P+I G ER +I ++FK +++T+ VS+V D DLP A
Sbjct: 136 FVEWLDQGDAISEKLEIPFINGEMPHRERERIFESFKAG-ELSTMVVSRVGDEGIDLPNA 194
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ AQR+GR +R +IA Y L ++ T E +++++ + L
Sbjct: 195 DMAILASGLGGSRRQGAQRVGRTMRPAGSSIA-------YVLATRGTREEEFAQRQMQHL 247
Query: 456 INQG 459
+G
Sbjct: 248 SEKG 251
>gi|163839247|ref|YP_001623652.1| DNA/RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162952723|gb|ABY22238.1| DNA/RNA helicase (DEAD/DEAH box family) [Renibacterium salmoninarum
ATCC 33209]
Length = 394
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + Q+ +LGLTA L+RED + ++ LIGPK Y+A W +++ +G+
Sbjct: 192 EVHLLPAPIFRMTAGL-QARRRLGLTAKLVREDGREGEVFSLIGPKRYDAPWKDIEAQGY 250
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA C EV + + Y + + + + L + +K + L+A H + ++ +V
Sbjct: 251 IAPADCVEVRVDLPKDERMAYAMAEDADKYRLCATSLSKIDVVEELVAAH--KNEQLLVI 308
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++N P I G TS ER ++ F+ +V+T+ VSKVA+ S DLPEA+
Sbjct: 309 GQYIDQLDEIGERINAPVIKGETSVKERQRLFDAFRAG-EVHTLVVSKVANFSIDLPEAS 367
Query: 397 VLIQISS 403
V IQ+S
Sbjct: 368 VAIQVSG 374
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 37 SAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPM 95
AGK+LVG A T L+L + VS QWK + ++ + I ++ K+ +P
Sbjct: 99 GAGKTLVGAAAMATSGTTTLILVTNTVSARQWKQELLKRTSLAEGEIGEYSGAMKEVRP- 157
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ + TY +++ + + ++ L +WG+++ D+
Sbjct: 158 ---VTIATYQVLTMRRGGLY---PHLELLDANDWGLIVYDE 192
>gi|222479956|ref|YP_002566193.1| type III restriction protein res subunit [Halorubrum lacusprofundi
ATCC 49239]
gi|222452858|gb|ACM57123.1| type III restriction protein res subunit [Halorubrum lacusprofundi
ATCC 49239]
Length = 658
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 121/258 (46%), Gaps = 26/258 (10%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H I A +F R + H +LGL+AT +RE ++ LIG + A+W EL + GF
Sbjct: 402 EAHHITAPIFSRSAELQAKH-RLGLSATPVRETGSEEEIYTLIG-RPIGADWDELFEAGF 459
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 460 VQEPEVEIRYVPWRDEMARNEYASADGRERRRLAAENPAKIEEIRYLLAAH--RDKKALV 517
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL--------------NPKVNTIF 381
F + + + A + P+I G T ER ++ + F+ V+T+
Sbjct: 518 FIEYLDQGEAIADALGVPFISGETPHHERAELFRRFREEGTEGGEREGIGADGDDVDTLV 577
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441
VS+V D DLP A + I S GGSRRQ +QR GR +R +A Y L ++
Sbjct: 578 VSRVGDEGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRG 630
Query: 442 TMEMSYSRKRQRFLINQG 459
+ E +++++ R L +G
Sbjct: 631 SSEEEFAQRQMRHLARKG 648
>gi|385803900|ref|YP_005840300.1| DNA repair helicase Rad25 [Haloquadratum walsbyi C23]
gi|339729392|emb|CCC40640.1| DNA repair helicase Rad25 [Haloquadratum walsbyi C23]
Length = 690
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IPA ++RR + Q+ +LGL+AT +REDDK ++ L+GP + +W L + G+
Sbjct: 446 EVHHIPAAVYRRSADL-QTKHRLGLSATPVREDDKETEIFTLVGPPIG-TDWSALFEAGY 503
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + P E + E+ R L NP K T+ L+ H +V
Sbjct: 504 VQEPYVEIQYVPWKDELSQNEWANADGRDRRRLAAENPQKITTTKKLLGMHSDA--SALV 561
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + A ++ P++ G R Q+ ++F+ + +++ + +S+V D DLP A
Sbjct: 562 FVEWLDHGEALADALDAPFVSGEMPHYRRDQVFESFR-DDEISVLVISRVGDEGIDLPNA 620
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A Y L ++ T E +++++ R L
Sbjct: 621 ELAVVASGLGGSRRQGAQRAGRTMRPTG-------SAQVYVLATRGTTEEEFAQRQLRHL 673
Query: 456 INQG 459
+G
Sbjct: 674 AEKG 677
>gi|110668437|ref|YP_658248.1| DNA repair helicase [Haloquadratum walsbyi DSM 16790]
gi|109626184|emb|CAJ52640.1| DNA repair helicase Rad25 [Haloquadratum walsbyi DSM 16790]
Length = 692
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IPA ++RR + Q+ +LGL+AT +REDDK ++ L+GP + +W L + G+
Sbjct: 448 EVHHIPAAVYRRSADL-QTKHRLGLSATPVREDDKETEIFTLVGPPI-GTDWSALFEAGY 505
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + P E + E+ R L NP K T+ L+ H +V
Sbjct: 506 VQEPYVEIQYVPWKDELSQNEWANADGRDRRRLAAENPQKITTTKKLLGMHSDA--SALV 563
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + A ++ P++ G R Q+ ++F+ + +++ + +S+V D DLP A
Sbjct: 564 FVEWLDHGEALADALDAPFVSGEMPHYRRDQVFESFR-DDEISVLVISRVGDEGIDLPNA 622
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A Y L ++ T E +++++ R L
Sbjct: 623 ELAVVASGLGGSRRQGAQRAGRTMRPTG-------SAQVYVLATRGTTEEEFAQRQLRHL 675
Query: 456 INQG 459
+G
Sbjct: 676 AEKG 679
>gi|448329809|ref|ZP_21519105.1| type III restriction protein res subunit [Natrinema versiforme JCM
10478]
gi|445613428|gb|ELY67129.1| type III restriction protein res subunit [Natrinema versiforme JCM
10478]
Length = 640
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L G
Sbjct: 396 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGH 453
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K IV
Sbjct: 454 VAEPELEIRYVPWGDDEQANAYGSADGREKYRIAARNRGKIDEVRYLLSAHPDA--KAIV 511
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + + P++ G T ER ++L F+ + + + + +S+V D DLP A
Sbjct: 512 FVDYLEQGRELSEALEVPFLSGETPHHERRRLLDEFRRDER-DLLLISRVGDEGIDLPTA 570
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 571 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 623
Query: 456 INQGYSYK 463
+G + +
Sbjct: 624 GRKGMTVR 631
>gi|448474264|ref|ZP_21602123.1| type III restriction protein res subunit [Halorubrum aidingense JCM
13560]
gi|445817571|gb|EMA67440.1| type III restriction protein res subunit [Halorubrum aidingense JCM
13560]
Length = 685
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 123/263 (46%), Gaps = 31/263 (11%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT +RE ++ LIG + A+W EL + GF
Sbjct: 424 EAHHVTAPVYSRTAEL-QSKHRLGLSATPVRETGSEEEIYTLIGQPI-GADWDELFEAGF 481
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 482 VQEPEVEIRYVPWRDELARNEYASADGRERRRLAAENPAKIEEIRYLLAAH--RDKKALV 539
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFK-------------------LNPK 376
F + + K A + P++ G T ER ++ + F+ +
Sbjct: 540 FIEFLDQGKAIADALGVPFVSGETPHYERAELFRRFRDDGARSSAGRDGDAPDGLGTSDA 599
Query: 377 VNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYT 436
++T+ VS+V D DLP A + I S GGSRRQ AQR GR +R +A Y
Sbjct: 600 IDTLVVSRVGDEGIDLPNAELAIVASGLGGSRRQGAQRAGRTMRPTG-------SALVYV 652
Query: 437 LVSQDTMEMSYSRKRQRFLINQG 459
L ++ + E +++++ R L +G
Sbjct: 653 LATRGSSEEEFAQRQMRHLARKG 675
>gi|302417724|ref|XP_003006693.1| DNA repair helicase RAD25 [Verticillium albo-atrum VaMs.102]
gi|261354295|gb|EEY16723.1| DNA repair helicase RAD25 [Verticillium albo-atrum VaMs.102]
Length = 518
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-- 95
AGK+LVG+TA CTV+K +VLC S +SV QW+++F WS I FTS+ K +
Sbjct: 366 AGKTLVGITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIAAFTSDNKGQTFTG 425
Query: 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI+VTTYSM++ T++RS EA + M +LQ++EWG+MLLD+
Sbjct: 426 STGIIVTTYSMVTQTRERSHEAKKMMDFLQHREWGLMLLDE 466
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKL 263
+ EVH +PA +FR+V + +++H KLGLTATLLREDDKI+DLNFLIGPK
Sbjct: 464 LDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIGPKF 512
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWV-APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG +DY + + LKPD ++RPLW+ A IFLESFSP+ + DFLI IAEP+ RP +H
Sbjct: 80 FGKRDY-SYLSLKPDFQNRPLWIDASKARIFLESFSPLAQQCQDFLITIAEPISRPSFVH 138
Query: 217 EVHTIPAKMFRRV 229
E P ++ V
Sbjct: 139 EYALSPHSLYAAV 151
>gi|448300808|ref|ZP_21490805.1| type III restriction protein res subunit [Natronorubrum tibetense
GA33]
gi|445584798|gb|ELY39103.1| type III restriction protein res subunit [Natronorubrum tibetense
GA33]
Length = 646
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 394 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFEAGF 451
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E R Y +R + N K +YL++ H K +V
Sbjct: 452 VAEPELEIRYVPWGDEGQRNAYASADGQERYRIAAKNRGKVDDVRYLLSAHPDA--KALV 509
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ N + + + +S+V D DLP A
Sbjct: 510 FVDYLEQGRDLAAALDVPFLSGETPHHERRRLLEEFRRNER-DLLVISRVGDEGIDLPTA 568
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 569 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 621
Query: 456 INQGYSYK 463
+G + +
Sbjct: 622 GRKGMTIR 629
>gi|448439742|ref|ZP_21588154.1| type III restriction protein res subunit [Halorubrum saccharovorum
DSM 1137]
gi|445690894|gb|ELZ43097.1| type III restriction protein res subunit [Halorubrum saccharovorum
DSM 1137]
Length = 658
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 122/252 (48%), Gaps = 20/252 (7%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H I + ++ R + Q+ +LGL+AT +RE ++ LIG + A+W EL + GF
Sbjct: 408 EAHHISSPVYSRTAEL-QTKHRLGLSATPVRETGSEEEIYTLIG-RPIGADWDELFEAGF 465
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 466 VQEPEVEIRYVPWRDEMARNEYASADGRERRRLAAENPAKIEEVRYLLAAH--RDKKALV 523
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLN--------PKVNTIFVSKVAD 387
F + + + A + P+I G T ER ++ + F+ + V+ + VS+V D
Sbjct: 524 FIEYLDQGEAIADALGVPFISGETPHRERAELFRRFRDDGGESDSDRDDVDALVVSRVGD 583
Query: 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY 447
DLP A + I S GGSRRQ +QR GR +R +A Y L ++ + E +
Sbjct: 584 EGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPAG-------SALVYVLATRGSSEEEF 636
Query: 448 SRKRQRFLINQG 459
++++ R L +G
Sbjct: 637 AQRQMRHLARKG 648
>gi|448466577|ref|ZP_21599163.1| type III restriction protein res subunit [Halorubrum kocurii JCM
14978]
gi|445813838|gb|EMA63812.1| type III restriction protein res subunit [Halorubrum kocurii JCM
14978]
Length = 648
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 22/254 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT +RE ++ LIG + A+W EL + GF
Sbjct: 396 ECHHVTAPVYSRTAEL-QSKHRLGLSATPVRETGSEEEIYTLIG-RPIGADWDELFEAGF 453
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E + EY +R L NP K +YL+A H R K +V
Sbjct: 454 VQEPEVEIRYVPWRDELAQNEYASADGRERRRLAAENPAKIEEIRYLLAAH--RDKKALV 511
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLN----------PKVNTIFVSKV 385
F + + + A + P+I G T ER ++ + F+ V+T+ VS+V
Sbjct: 512 FIEFLDQGEAIADALGVPFISGETPHYERAELFRRFREEGDEPSADADRDDVDTLVVSRV 571
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
D DLP A + I S GGSRRQ +QR GR +R +A Y L ++ + E
Sbjct: 572 GDEGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGSSEE 624
Query: 446 SYSRKRQRFLINQG 459
+++++ R L +G
Sbjct: 625 EFAQRQMRHLARKG 638
>gi|161899087|ref|XP_001712770.1| DNA repair and transcription protein [Bigelowiella natans]
gi|75756263|gb|ABA27158.1| DNA repair and transcription protein [Bigelowiella natans]
Length = 534
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 11/243 (4%)
Query: 225 MFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAE 284
+F R++ + S+ ++GLTA + I + +IGPKL W +L G I+ V+ E
Sbjct: 275 IFYRLIKL-HSYGRVGLTAIFKLDHGGINYCDTIIGPKLVNVKWKQLTHSGSISFVKYYE 333
Query: 285 VWCPMSPEFYREYLVCKTSK----RLLLYVMNPNKYRATQYLIAYHERRGDKTI-VFSDN 339
+ + + L+ K SK + + MNPNK +YLI Y I +F D+
Sbjct: 334 ILIDLPL---MDQLIYKNSKSNREKFDIATMNPNKIEICRYLIKYFLYSIKFNILIFCDS 390
Query: 340 VFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNT-IFVSKVADTSFDLPEANVL 398
+ + I G TS+ R ++++ FK N N I SKV DTS D+P AN++
Sbjct: 391 IKLHNKIRKALKIDSISGKTSKIIREKLIKEFKANNNKNNAILFSKVGDTSVDIPNANLI 450
Query: 399 IQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQ 458
IQISS GS QE QR+GRI+RA ++Y+ F L+S++T+E YS+KR+ L Q
Sbjct: 451 IQISSDRGSSVQEIQRIGRIMRANNLKSVKKYSIFI-NLISKNTVEHYYSKKRKSLLARQ 509
Query: 459 GYS 461
+S
Sbjct: 510 DFS 512
>gi|147918687|ref|YP_687590.1| putative DNA repair protein 25 [Methanocella arvoryzae MRE50]
gi|110622986|emb|CAJ38264.1| putative DNA repair protein 25 [Methanocella arvoryzae MRE50]
Length = 446
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 179/404 (44%), Gaps = 88/404 (21%)
Query: 110 TQKRSWEADQTMQWLQNQEWGIMLLDDG-----VPVAAKKNVEKDDAAVP---------- 154
T R ++ WL+ +WG+++L G V + A V VP
Sbjct: 69 TVLREYQEKAIAAWLRADKWGVVVLPTGSGKTLVALKAISIVHPAIVIVPTLDLVEQWKS 128
Query: 155 --EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRP 212
E+EFG + + +H+ P+ +A ++ + R F + + +
Sbjct: 129 RIEEEFGIE---PGVYSGEEHRLGPVTIATYDTAYIRASELGNR----FRLVVFD----- 176
Query: 213 EHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQ 272
EVH +P+ + + ++ C+LGLTAT RED K DL L+G K++E + L+
Sbjct: 177 ----EVHHLPSPAYTTIAEMLACPCRLGLTATYEREDGKEKDLPRLVGGKVFEMSVENLE 232
Query: 273 KRGFIARVQCAEVWCPMSPE----------FYREYL-----VCKTSKRLLLYVMNPNKYR 317
+A + + PE YR+YL + ++ + VM + +
Sbjct: 233 GV-HLANYDLRRIKVDLLPEEEASYRRDYDLYRKYLSDNHIILRSPRDFERLVMRSGRDK 291
Query: 318 -ATQYLIAYHERRG-----------------------DKTIVFSDN---VFAL-KHYAVK 349
A + ++A H R D+TI+F+++ V+A+ K + +
Sbjct: 292 GAREAILARHRARTTALNSRAKILELTKIFQQHSGPEDRTIIFTEHNELVYAISKEFLI- 350
Query: 350 MNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRR 409
P+I TS+ ER++ L F+ I SKV D D+P+ANV I I S GSRR
Sbjct: 351 ---PFITHTTSKDERMENLSKFRTG-AYRAIVTSKVLDEGVDVPDANVGI-ILSGSGSRR 405
Query: 410 QEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
+ QRLGRILR KKG + A Y +V+Q TME SRKR+R
Sbjct: 406 EFVQRLGRILR-KKG----DKKAVLYEIVAQGTMEEGSSRKRRR 444
>gi|385302856|gb|EIF46964.1| dna repair helicase rad25 [Dekkera bruxellensis AWRI1499]
Length = 273
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT+RK A+VLC S VSV QW+ QF W T + I FTSE K+ G
Sbjct: 127 AGKTLVGITAACTIRKSAIVLCTSSVSVMQWRQQFLQWCTIQPNQIAVFTSENKEMFSGD 186
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++++TYSM+++T+ RS ++ + M ++ ++EWG ++LD+ VP A + V AA
Sbjct: 187 SGLVISTYSMVANTRNRSHDSQKVMDFITSREWGFIILDEVHVVPAAMFRRVVTTIAA 244
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNF 257
+ EVH +PA MFRRV+T + +H KLGLTATL+RED+KI+DLNF
Sbjct: 224 LDEVHVVPAAMFRRVVTTIAAHAKLGLTATLVREDEKISDLNF 266
>gi|448318047|ref|ZP_21507585.1| type III restriction protein res subunit [Natronococcus jeotgali
DSM 18795]
gi|445600805|gb|ELY54807.1| type III restriction protein res subunit [Natronococcus jeotgali
DSM 18795]
Length = 658
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 135/259 (52%), Gaps = 14/259 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 412 ECQHVPSDIYRRS-THLQSRHRLGLSASPIREDDRQKEIFTLVGPPIG-TDWEALFDAGF 469
Query: 277 IARVQCAEVWCPMSPEFY-REYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y + ++ + N K +YL++ H G K++V
Sbjct: 470 VAEPELEIRYVPWGDEEQGNAYGSAEGREKYRIAAQNRGKIDEVRYLLSAHP--GAKSLV 527
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 528 FVDYLAQGRAIADALDVPFLSGETPHRERRRLLEEFRRDER-DLLVISRVGDEGIDLPTA 586
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 587 DMAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEEFARRQLQHL 639
Query: 456 INQGYSYKVIT-KLAGMEE 473
+G + + T AG EE
Sbjct: 640 GRKGITVREQTVDAAGTEE 658
>gi|344211217|ref|YP_004795537.1| DNA repair helicase [Haloarcula hispanica ATCC 33960]
gi|343782572|gb|AEM56549.1| DNA repair helicase [Haloarcula hispanica ATCC 33960]
Length = 620
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ + RR + Q+ +LGLTAT RE D ++ LIGP + +W +L G+
Sbjct: 371 EVHHVPSPIHRRSADL-QTKHRLGLTATPTRESDDEEEIFTLIGPPIG-TDWGKLFDEGY 428
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P E + EY R N K Y +A E K +V
Sbjct: 429 VAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQAAASNTGKIDEIHYALA--ENPAAKALV 486
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + + ++ P+I G T + R ++ F+ ++NT+ VS+V D DLP+A
Sbjct: 487 FIEYLDQGEAISEAIDAPFISGETPHARREKLFDEFRRG-ELNTLVVSRVGDEGIDLPDA 545
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ I S GGSRRQ AQR GR +R +A L ++ T E + R++ R L
Sbjct: 546 ELAIVASGLGGSRRQGAQRAGRTMRPAG-------DARMVILATRGTTEEDFVRRQMRHL 598
Query: 456 INQG 459
++G
Sbjct: 599 ASKG 602
>gi|448678599|ref|ZP_21689606.1| DNA repair helicase [Haloarcula argentinensis DSM 12282]
gi|445772586|gb|EMA23631.1| DNA repair helicase [Haloarcula argentinensis DSM 12282]
Length = 621
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ + RR + Q+ +LGLTAT RE D ++ LIGP + +W +L G+
Sbjct: 372 EVHHVPSPIHRRSADL-QTKHRLGLTATPTRESDDEEEIFTLIGPPIG-TDWGKLFDEGY 429
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P E + EY R + N K +Y +A E K +V
Sbjct: 430 VAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQVAASNTGKIDEIRYALA--ENPAAKALV 487
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + + ++ P+I G T + R ++ F+ ++NT+ VS+V D DLP+A
Sbjct: 488 FIEYLDQGEAISEAIDAPFISGETPHARREKLFDEFRRG-ELNTLVVSRVGDEGIDLPDA 546
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A L ++ T E + R++ R L
Sbjct: 547 ELALVASGLGGSRRQGAQRAGRTMRPAG-------DARMVILATRGTTEEDFVRRQMRHL 599
Query: 456 INQG 459
++G
Sbjct: 600 ASKG 603
>gi|448309246|ref|ZP_21499107.1| type III restriction protein res subunit [Natronorubrum bangense
JCM 10635]
gi|445590551|gb|ELY44764.1| type III restriction protein res subunit [Natronorubrum bangense
JCM 10635]
Length = 659
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 129/248 (52%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 408 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFEAGF 465
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P + R Y+ ++ + N K +YL++ H K IV
Sbjct: 466 VAEPELEIRYVPWGDDEQRNAYVSADGREKYRIAAKNRGKIDDVRYLLSAHP--DSKAIV 523
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ N + + + +S+V D DLP A
Sbjct: 524 FVDYLEQGRDLAAALDVPFLSGETPHHERRRLLEEFRRNER-DLLVISRVGDEGIDLPTA 582
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L + T E ++RK+ + L
Sbjct: 583 DLAIIASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATYGTREEDFARKQLQHL 635
Query: 456 INQGYSYK 463
+G + +
Sbjct: 636 GRKGMTIR 643
>gi|289582687|ref|YP_003481153.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
gi|448281886|ref|ZP_21473179.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
gi|289532240|gb|ADD06591.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
gi|445577515|gb|ELY31948.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
Length = 649
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 400 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWQALFEAGF 457
Query: 277 IARVQCAEVWCPMSP-EFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y +R + N K +YL++ H G K++V
Sbjct: 458 VAEPELEIRYVPWGDDEQSNAYASADGRERYRIAARNRGKIDEVRYLLSAHP--GSKSLV 515
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T ER ++L+ F+ + + + + VS+V D DLP A
Sbjct: 516 FVDYLEQGRDLSDALDVPFLSGETPHHERRRLLEEFRRDER-DLLIVSRVGDEGIDLPTA 574
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 575 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARRQLQHL 627
Query: 456 INQGYSYK 463
+G + +
Sbjct: 628 GRKGMTVR 635
>gi|435848672|ref|YP_007310922.1| DNA/RNA helicase, superfamily II [Natronococcus occultus SP4]
gi|433674940|gb|AGB39132.1| DNA/RNA helicase, superfamily II [Natronococcus occultus SP4]
Length = 646
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 136/260 (52%), Gaps = 14/260 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 399 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGF 456
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E + Y + ++ + N K +YL++ H G K++V
Sbjct: 457 VAEPELEIRYVPWGDEEQQNAYGSAEGREKYRIAAQNRGKIDEIRYLLSAHP--GAKSLV 514
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 515 FVDYLEQGRELAAALDVPFLSGETPHHERRRLLEEFRRDER-DLLVISRVGDEGIDLPTA 573
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 574 DMAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEEFARRQLQHL 626
Query: 456 INQGYSYKVIT-KLAGMEEE 474
+G + + AG +EE
Sbjct: 627 GRKGITVREQNVDAAGTDEE 646
>gi|448302736|ref|ZP_21492709.1| type III restriction protein res subunit [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595309|gb|ELY49420.1| type III restriction protein res subunit [Natronorubrum
sulfidifaciens JCM 14089]
Length = 642
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 392 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFEAGF 449
Query: 277 IARVQCAEVWCPMSP-EFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y+ ++ + N K +YL++ H K IV
Sbjct: 450 VAEPELEIRYVPWGDDEQQNAYVSADGREKYRIAAKNRGKIDDVRYLLSAHP--DSKAIV 507
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ N + + + +S+V D DLP A
Sbjct: 508 FVDYLEQGRDLAAALDVPFLSGETPHHERRRLLEEFRRNER-DLLIISRVGDEGIDLPTA 566
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L + T E ++RK+ + L
Sbjct: 567 DLAIIASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATYGTREEDFARKQLQHL 619
Query: 456 INQGYSYK 463
+G + +
Sbjct: 620 GRKGMTIR 627
>gi|448428101|ref|ZP_21584201.1| type III restriction protein res subunit [Halorubrum terrestre JCM
10247]
gi|445676885|gb|ELZ29399.1| type III restriction protein res subunit [Halorubrum terrestre JCM
10247]
Length = 642
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 21/253 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 391 EAHHVSAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYTLIGQPIG-ADWDSLFEAGF 448
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 449 VQEPEVEIRYVPWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH--RDKKALV 506
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL---------NPKVNTIFVSKVA 386
F + + + A ++ P+I G T ER ++ + F+ ++ + VS+V
Sbjct: 507 FVEYLDHGREIADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVG 566
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
D DLP A + + S GGSRRQ +QR GR +R +A Y L ++ + E
Sbjct: 567 DEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGSSEEE 619
Query: 447 YSRKRQRFLINQG 459
+++++ R L +G
Sbjct: 620 FAQRQMRHLGRKG 632
>gi|448453685|ref|ZP_21594028.1| type III restriction protein res subunit [Halorubrum litoreum JCM
13561]
gi|445807485|gb|EMA57570.1| type III restriction protein res subunit [Halorubrum litoreum JCM
13561]
Length = 642
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 21/253 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 391 EAHHVSAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYTLIGQPIG-ADWDSLFEAGF 448
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 449 VQEPEVEIRYVPWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH--RDKKALV 506
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL---------NPKVNTIFVSKVA 386
F + + + A ++ P+I G T ER ++ + F+ ++ + VS+V
Sbjct: 507 FVEYLDHGREIADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVG 566
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
D DLP A + + S GGSRRQ +QR GR +R +A Y L ++ + E
Sbjct: 567 DEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGSSEEE 619
Query: 447 YSRKRQRFLINQG 459
+++++ R L +G
Sbjct: 620 FAQRQMRHLGRKG 632
>gi|448323084|ref|ZP_21512549.1| type III restriction protein res subunit [Natronococcus
amylolyticus DSM 10524]
gi|445600713|gb|ELY54719.1| type III restriction protein res subunit [Natronococcus
amylolyticus DSM 10524]
Length = 649
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 14/260 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 402 ECQHVPSDIYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGF 459
Query: 277 IARVQCAEVWCPMSPEFY-REYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y + ++ + N K +YL++ H G K++V
Sbjct: 460 VAEPELEIRYVPWGDEEQGNAYGSAEGREKYRIAAQNRGKIDEVRYLLSAHP--GAKSLV 517
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 518 FVDYLEQGRELADALDVPFLSGETPHHERRRLLEEFRRDER-DLLVISRVGDEGIDLPTA 576
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 577 DMAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEEFARRQLQHL 629
Query: 456 INQGYSYKVIT-KLAGMEEE 474
+G + + AG +EE
Sbjct: 630 GRKGITVREQNVDAAGTDEE 649
>gi|448667378|ref|ZP_21685920.1| DNA repair helicase [Haloarcula amylolytica JCM 13557]
gi|445770413|gb|EMA21477.1| DNA repair helicase [Haloarcula amylolytica JCM 13557]
Length = 620
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ + RR + Q+ +LGLTAT RE D ++ LIGP + +W +L G+
Sbjct: 371 EVHHVPSPIHRRSADL-QTKHRLGLTATPTRESDDEEEIFTLIGPPIG-TDWGKLFDEGY 428
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P E + EY R N K +Y +A E K +V
Sbjct: 429 VAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQTAASNTGKIDEIRYALA--ENPAAKALV 486
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + + ++ P+I G T + R ++ F+ ++NT+ VS+V D DLP+A
Sbjct: 487 FIEYLDQGEAISEAIDAPFISGETPHARREKLFDEFRRG-ELNTLVVSRVGDEGIDLPDA 545
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A L ++ T E + R++ R L
Sbjct: 546 ELALVASGLGGSRRQGAQRAGRTMRPAG-------DARMVILATRGTTEEDFVRRQMRHL 598
Query: 456 INQG 459
++G
Sbjct: 599 ASKG 602
>gi|448314677|ref|ZP_21504360.1| type III restriction protein res subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445594410|gb|ELY48570.1| type III restriction protein res subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 654
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +RED++ ++ L+GP + +W L GF
Sbjct: 386 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDNRQTEIFTLVGPPIG-TDWEALFDAGF 443
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E R Y +R + N K +YL++ H K +V
Sbjct: 444 VAEPELEIRYVPWGDEEQRNAYASADGQERYRIAAKNRGKVDEVRYLLSAHP--DSKALV 501
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ + + + + VS+V D DLP A
Sbjct: 502 FVDYLEQGEDLAAALDVPFLSGETRHHERRRLLEEFRRDER-DLLIVSRVGDEGIDLPTA 560
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 561 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 613
Query: 456 INQGYSYK 463
+G + +
Sbjct: 614 GRKGMTIR 621
>gi|448689019|ref|ZP_21694756.1| DNA repair helicase [Haloarcula japonica DSM 6131]
gi|445778889|gb|EMA29831.1| DNA repair helicase [Haloarcula japonica DSM 6131]
Length = 621
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ + RR + Q+ +LGLTAT RE D ++ LIGP + +W +L G+
Sbjct: 372 EVHHVPSPIHRRSADL-QTKHRLGLTATPTRESDDEEEIFTLIGPPIG-TDWGKLFDEGY 429
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P E + EY R N K +Y +A E K +V
Sbjct: 430 VAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQAAASNTGKIDEIRYALA--ENPAAKALV 487
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + + ++ P+I G T + R ++ F+ ++NT+ VS+V D DLP+A
Sbjct: 488 FIEYLDQGEAISEAIDAPFISGETPHARREKLFDEFRRG-ELNTLVVSRVGDEGIDLPDA 546
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A L ++ T E + R++ R L
Sbjct: 547 ELALVASGLGGSRRQGAQRAGRTMRPAG-------DARMVILATRGTTEEDFVRRQMRHL 599
Query: 456 INQG 459
++G
Sbjct: 600 ASKG 603
>gi|448355614|ref|ZP_21544364.1| type III restriction protein res subunit [Natrialba hulunbeirensis
JCM 10989]
gi|445634735|gb|ELY87910.1| type III restriction protein res subunit [Natrialba hulunbeirensis
JCM 10989]
Length = 677
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 400 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWQALFEAGF 457
Query: 277 IARVQCAEVWCPMSP-EFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y +R + N K +YL++ H K +V
Sbjct: 458 VAEPELEIRYVPWGDDEQSNAYASADGRERYRIAARNRGKVDEVRYLLSAHADS--KALV 515
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ + + + + VS+V D DLP A
Sbjct: 516 FVDYLDQGRDLADALDVPFLSGETPHHERRRLLEEFRRDER-DLLIVSRVGDEGIDLPTA 574
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 575 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARRQLQHL 627
Query: 456 INQGYSYK 463
+G + +
Sbjct: 628 GRKGMTVR 635
>gi|448485711|ref|ZP_21606856.1| type III restriction protein res subunit [Halorubrum arcis JCM
13916]
gi|445817410|gb|EMA67284.1| type III restriction protein res subunit [Halorubrum arcis JCM
13916]
Length = 632
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 21/253 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 381 EAHHVSAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYTLIGQPI-GADWDSLFEAGF 438
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 439 VQEPEVEIRYVPWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH--RDKKALV 496
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL---------NPKVNTIFVSKVA 386
F + + + A ++ P+I G T ER ++ + F+ ++ + VS+V
Sbjct: 497 FVEYLDHGREIADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVG 556
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
D DLP A + + S GGSRRQ +QR GR +R +A Y L ++ + E
Sbjct: 557 DEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGSSEEE 609
Query: 447 YSRKRQRFLINQG 459
+++++ R L +G
Sbjct: 610 FAQRQMRHLGRKG 622
>gi|55377101|ref|YP_134951.1| DNA repair helicase [Haloarcula marismortui ATCC 43049]
gi|55229826|gb|AAV45245.1| DNA repair helicase [Haloarcula marismortui ATCC 43049]
Length = 470
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ + RR + Q+ +LGLTAT RE D ++ LIGP + +W +L G+
Sbjct: 221 EVHHVPSPIHRRSADL-QTKHRLGLTATPTRESDDEEEIFTLIGPPIG-TDWGKLFDEGY 278
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P E + EY R N K +Y +A E K +V
Sbjct: 279 VAEPEVEIRLVPWGDETEQSEYSSTSGHDRRQAAASNTGKIDEIRYALA--ENPAAKALV 336
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + + ++ P+I G T + R ++ F+ ++ T+ VS+V D DLP+A
Sbjct: 337 FIEYLDQGEAISEAIDAPFISGETPHARREKLFDEFRRG-ELTTLVVSRVGDEGIDLPDA 395
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A L ++ T E + R++ R L
Sbjct: 396 ELALVASGLGGSRRQGAQRAGRTMRPAG-------DARMVILATRGTTEEDFVRRQMRHL 448
Query: 456 INQG 459
++G
Sbjct: 449 ASKG 452
>gi|448384820|ref|ZP_21563555.1| type III restriction protein res subunit [Haloterrigena
thermotolerans DSM 11522]
gi|445657824|gb|ELZ10648.1| type III restriction protein res subunit [Haloterrigena
thermotolerans DSM 11522]
Length = 655
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 136/271 (50%), Gaps = 22/271 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 398 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGF 455
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y + ++ + N K +YL++ H K IV
Sbjct: 456 VAEPELEIRYVPWGDDEQQNAYASAEGQEKYRIAARNRGKIDEVRYLLSAHPEA--KAIV 513
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 514 FVDYLEQGRELSAALDVPFLSGETPHHERRRLLEEFRRDER-DLLLISRVGDEGIDLPTA 572
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ + E ++RK+ + L
Sbjct: 573 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGSREEDFARKQLQHL 625
Query: 456 INQGYSYKVITKLAGMEEERGMHYSTRDEQG 486
+G + + E+R S+ DE G
Sbjct: 626 GRKGITVR---------EQRVEDGSSADEDG 647
>gi|429193446|ref|YP_007179124.1| DNA/RNA helicase [Natronobacterium gregoryi SP2]
gi|448324008|ref|ZP_21513450.1| type III restriction protein res subunit [Natronobacterium gregoryi
SP2]
gi|429137664|gb|AFZ74675.1| DNA/RNA helicase, superfamily II [Natronobacterium gregoryi SP2]
gi|445619906|gb|ELY73420.1| type III restriction protein res subunit [Natronobacterium gregoryi
SP2]
Length = 620
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 13/252 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 368 ECQHVPSDVYRRS-THLQSQHRLGLSASPIREDDRQTEIFTLVGPPI-GTDWQALFDAGF 425
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P + R Y +R + N K +YL+ H K +V
Sbjct: 426 VAEPELEIRYVPWGDDQQRNAYASADGRERYRIAAKNHGKIDEVRYLLRDHHDA--KALV 483
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ + + + + VS+V D DLP A
Sbjct: 484 FVDYLEQGRELAEALDGPFLSGETPHHERRRLLEEFRRDER-DLLVVSRVGDEGIDLPTA 542
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 543 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEEFARRQLQHL 595
Query: 456 INQGYSYKVITK 467
+G + + T+
Sbjct: 596 GRKGMTVREQTR 607
>gi|389860558|ref|YP_006362797.1| DNA repair helicase RAD25 [Thermogladius cellulolyticus 1633]
gi|388525461|gb|AFK50659.1| DNA repair helicase RAD25 [Thermogladius cellulolyticus 1633]
Length = 545
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 179/392 (45%), Gaps = 61/392 (15%)
Query: 107 ISHTQKRSWEADQTMQWLQNQEWGIMLLDDG-----VPVAAKKNVEKDDAAVPEDEFGAK 161
+ + + R ++ + +WL+N+ GI+ L G + VAA + + V + A
Sbjct: 161 LVNVKLRDYQEEALAKWLENKGTGIIALPTGSGKTVIGVAAITKISERTLIVTYTKEQAV 220
Query: 162 DYRAQMVLK----PDHKSRPLW-----VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRP 212
+R + +LK P H L+ +AP I + ++ +R +I P
Sbjct: 221 QWR-ETILKYTNTPSHMVGLLYSEEKRIAP---ITITTYQTGFR-----MIKEIAPQYSL 271
Query: 213 EHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQ 272
+ EVH +PA FR + + ++GL+AT RED + +L L+G +Y EL
Sbjct: 272 LIVDEVHHLPADKFRFIAVHAVAPYRMGLSATPYREDGRHEELFPLLGGVVYYKTPGELA 331
Query: 273 KRGFIARVQCAEVWCPMSPEFYREYLVCKT-------------------------SKRLL 307
++G++AR V + P ++EYL +T ++ L
Sbjct: 332 EQGYLARYVVYTVKTRLPPNEWKEYLELRTVFEKYAAGRTFEQLVDDASRGDKSAAEALR 391
Query: 308 LY-----VMNPNKYRATQYL-IAYHE-RRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTS 360
++ ++ +K + + + IA E +G K IVF+ V + A ++N + G T
Sbjct: 392 VHSKIRGILAKSKAKIEKAVEIARSELAKGGKIIVFTQYVEQAEELAKRLNAWLLTGETP 451
Query: 361 QSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILR 420
ER + L+ FK + K + V+ V D D+P+ANV I I S GSRRQ QRLGRILR
Sbjct: 452 GEERRRALEEFK-SAKSGILVVTTVGDEGLDIPDANVGI-IVSGTGSRRQFVQRLGRILR 509
Query: 421 AKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
K G A Y +V + T E +RKR+
Sbjct: 510 PKPGG----GEARLYEIVLEKTSEEFQARKRK 537
>gi|448640630|ref|ZP_21677533.1| DNA repair helicase [Haloarcula sinaiiensis ATCC 33800]
gi|448651341|ref|ZP_21680410.1| DNA repair helicase [Haloarcula californiae ATCC 33799]
gi|445761940|gb|EMA13179.1| DNA repair helicase [Haloarcula sinaiiensis ATCC 33800]
gi|445770868|gb|EMA21926.1| DNA repair helicase [Haloarcula californiae ATCC 33799]
Length = 621
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ + RR + Q+ +LGLTAT RE D ++ LIGP + +W +L G+
Sbjct: 372 EVHHVPSPIHRRSADL-QTKHRLGLTATPTRESDDEEEIFTLIGPPIG-TDWGKLFDEGY 429
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P E + EY R N K +Y +A E K +V
Sbjct: 430 VAEPEVEIRLVPWGDETEQSEYSSTSGHDRRQAAASNTGKIDEIRYALA--ENPAAKALV 487
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + + ++ P+I G T + R ++ F+ ++ T+ VS+V D DLP+A
Sbjct: 488 FIEYLDQGEAISEAIDAPFISGETPHARREKLFDEFRRG-ELTTLVVSRVGDEGIDLPDA 546
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A L ++ T E + R++ R L
Sbjct: 547 ELALVASGLGGSRRQGAQRAGRTMRPAG-------DARMVILATRGTTEEDFVRRQMRHL 599
Query: 456 INQG 459
++G
Sbjct: 600 ASKG 603
>gi|448359567|ref|ZP_21548217.1| type III restriction protein res subunit [Natrialba chahannaoensis
JCM 10990]
gi|445642202|gb|ELY95271.1| type III restriction protein res subunit [Natrialba chahannaoensis
JCM 10990]
Length = 677
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 400 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWQALFEAGF 457
Query: 277 IARVQCAEVWCPMSP-EFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K +V
Sbjct: 458 VAEPELEIRYVPWGDDEQSNAYASADGREKYRIAARNRGKVDDVRYLLSAHADS--KALV 515
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A ++ P++ G T ER ++L+ F+ + + + + VS+V D DLP A
Sbjct: 516 FVDYLDQGRDLADALDVPFLSGETPHHERRRLLEEFRRDER-DLLIVSRVGDEGIDLPTA 574
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 575 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARRQLQHL 627
Query: 456 INQGYSYK 463
+G + +
Sbjct: 628 GRKGMTVR 635
>gi|448519873|ref|ZP_21618080.1| type III restriction protein res subunit [Halorubrum distributum
JCM 10118]
gi|445703437|gb|ELZ55367.1| type III restriction protein res subunit [Halorubrum distributum
JCM 10118]
Length = 642
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 21/253 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 391 EAHHVSAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYTLIGQPIG-ADWDSLFEAGF 448
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY + L NP K +YL+A H R K +V
Sbjct: 449 VQEPEVEIRYVPWRDETARNEYAAADGREHRRLAAENPAKVEEIRYLLAAH--RDKKALV 506
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL---------NPKVNTIFVSKVA 386
F + + + A ++ P+I G T ER ++ + F+ ++ + VS+V
Sbjct: 507 FVEYLDHGREIADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVG 566
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
D DLP A + + S GGSRRQ +QR GR +R +A Y L ++ + E
Sbjct: 567 DEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGSSEEE 619
Query: 447 YSRKRQRFLINQG 459
+++++ R L +G
Sbjct: 620 FAQRQMRHLGRKG 632
>gi|448630375|ref|ZP_21673030.1| DNA repair helicase [Haloarcula vallismortis ATCC 29715]
gi|445756298|gb|EMA07673.1| DNA repair helicase [Haloarcula vallismortis ATCC 29715]
Length = 621
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 13/244 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ + RR + Q+ +LGLTAT RE D ++ L+GP + +W +L G+
Sbjct: 372 EVHHVPSPIHRRSADL-QTKHRLGLTATPTRESDDEEEIFTLVGPPIG-TDWGKLFDEGY 429
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + P E + EY R N K +Y +A E K +V
Sbjct: 430 VAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQAAASNTGKIDEIRYALA--ENPAAKALV 487
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + + + ++ P+I G T + R ++ F+ +++T+ VS+V D DLP+A
Sbjct: 488 FIEYLDQGEAISEAIDAPFISGETPHARREKLFDEFRRG-ELDTLVVSRVGDEGIDLPDA 546
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ + S GGSRRQ AQR GR +R +A L ++ T E + R++ R L
Sbjct: 547 ELALVASGLGGSRRQGAQRAGRTMRPAG-------DARMVILATRGTTEEDFVRRQMRHL 599
Query: 456 INQG 459
++G
Sbjct: 600 ASKG 603
>gi|448498866|ref|ZP_21611057.1| type III restriction protein res subunit [Halorubrum coriense DSM
10284]
gi|445698039|gb|ELZ50092.1| type III restriction protein res subunit [Halorubrum coriense DSM
10284]
Length = 635
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 25/257 (9%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 380 ECHHVTAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYTLIGQPI-GADWDSLFEAGF 437
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 438 VQEPEVEIRYVPWREEMARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH--RDKKALV 495
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPK-------------VNTIFV 382
F + + A + P+I G T ER ++ + F+ + + ++ + V
Sbjct: 496 FVEYLDQGAAIADALGVPFISGETPHHERAELFRRFRADEEAGSSDGGSATDDDLDVLVV 555
Query: 383 SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442
S+V D DLP A + + S GGSRRQ +QR GR +R +A Y L ++ +
Sbjct: 556 SRVGDEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGS 608
Query: 443 MEMSYSRKRQRFLINQG 459
E +++++ R L +G
Sbjct: 609 SEEEFAQRQMRHLGRKG 625
>gi|448511860|ref|ZP_21616239.1| type III restriction protein res subunit [Halorubrum distributum
JCM 9100]
gi|445694694|gb|ELZ46813.1| type III restriction protein res subunit [Halorubrum distributum
JCM 9100]
Length = 642
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 21/253 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 391 EAHHVSAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYPLIGQPIG-ADWDSLFEAGF 448
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY + L NP K +YL+A H R K +V
Sbjct: 449 VQEPEVEIRYVPWRDETARNEYAAADGREHRRLAAENPAKVEEIRYLLAAH--RDKKALV 506
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL---------NPKVNTIFVSKVA 386
F + + + A ++ P+I G T ER ++ + F+ ++ + VS+V
Sbjct: 507 FVEYLDHGREIADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVG 566
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
D DLP A + + S GGSRRQ +QR GR +R +A Y L ++ + E
Sbjct: 567 DEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGSSEEE 619
Query: 447 YSRKRQRFLINQG 459
+++++ R L +G
Sbjct: 620 FAQRQMRHLGRKG 632
>gi|448671428|ref|ZP_21687367.1| DNA/RNA helicase, superfamily ii [Haloarcula amylolytica JCM 13557]
gi|445766031|gb|EMA17168.1| DNA/RNA helicase, superfamily ii [Haloarcula amylolytica JCM 13557]
Length = 649
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 15/245 (6%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H A ++R I QS +LGL+AT +RE ++ LIGP + +W L G+
Sbjct: 406 ECHHAVADTWKRFREI-QSVARLGLSATPVRESGDAQEIYTLIGPPVG-TDWGSLFADGW 463
Query: 277 IARVQCAEVWCPMSPEFYRE-YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD-KTI 334
+ + + P + RE Y +++L+ N K + L+ +R GD K I
Sbjct: 464 VEKPDVEIITVPWGSDDERESYQRTSGNRQLIEAARNSAKTDVVRSLL---DRHGDAKNI 520
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
+F D + + A ++ P+IYG TS R ++ Q F+ + + + +S+V D DLP+
Sbjct: 521 IFVDWIKQGQQLAEALDLPFIYGETSHDRRDELYQQFR-DGGLEALIISRVGDEGIDLPD 579
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A V I S+ G SR Q QR GR +R ++ Y L+++ + E + R+ ++
Sbjct: 580 AEVAILASTMGSSRSQTGQRAGRTMRPMG-------DSRVYVLLTRGSGEEDWGRESTQY 632
Query: 455 LINQG 459
L +G
Sbjct: 633 LAEKG 637
>gi|448352223|ref|ZP_21541014.1| type III restriction protein res subunit [Natrialba taiwanensis DSM
12281]
gi|445631603|gb|ELY84832.1| type III restriction protein res subunit [Natrialba taiwanensis DSM
12281]
Length = 681
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 432 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWQALFDDGF 489
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y +R + N K +YL+A K ++
Sbjct: 490 VAEPELEIRYVPWGDDEQQNAYASADGRERYRIAAQNRGKIDEIRYLLAAEPNS--KALI 547
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + A ++ P++ G T ER ++L+ F+ + + + + VS+V D DLP A
Sbjct: 548 FVDYLDQGGELATALDVPFLSGETPHHERRRLLEEFRRDER-DLLIVSRVGDEGIDLPTA 606
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 607 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARRQLQHL 659
Query: 456 INQGYSYK 463
+G + +
Sbjct: 660 GRKGMTVR 667
>gi|448365465|ref|ZP_21553845.1| type III restriction protein res subunit [Natrialba aegyptia DSM
13077]
gi|445655004|gb|ELZ07851.1| type III restriction protein res subunit [Natrialba aegyptia DSM
13077]
Length = 671
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 422 ECQHVPSDVYRRS-THLQSRHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWQALFDDGF 479
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y +R + N K +YL+A K ++
Sbjct: 480 VAEPELEIRYVPWGDDEQQNAYASADGRERYRIAAQNRGKIDEIRYLLAAEP--NSKALI 537
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + A ++ P++ G T ER ++L+ F+ + + + + VS+V D DLP A
Sbjct: 538 FVDYLDQGGELATALDVPFLSGETPHHERRRLLEEFRRDER-DLLIVSRVGDEGIDLPTA 596
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++R++ + L
Sbjct: 597 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARRQLQHL 649
Query: 456 INQGYSYK 463
+G + +
Sbjct: 650 GRKGMTVR 657
>gi|448537455|ref|ZP_21622605.1| type III restriction protein res subunit [Halorubrum hochstenium
ATCC 700873]
gi|445702081|gb|ELZ54048.1| type III restriction protein res subunit [Halorubrum hochstenium
ATCC 700873]
Length = 652
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 20/252 (7%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H + A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 402 EAHHVTAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYTLIGGPIG-ADWDALFEAGF 459
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E EY +R + NP K +YL+A H R K +V
Sbjct: 460 VQEPEVEIRYVPWRDELAESEYAAADGRERRRVAAENPAKIEELRYLLAAH--RDKKALV 517
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL--------NPKVNTIFVSKVAD 387
F + + A ++ P+I G T ER ++ + F+ ++ + VS+V D
Sbjct: 518 FVEYLDHGNAIADALDAPFISGETPHHERAELFRRFRAEGADAEDAGDDLDVLVVSRVGD 577
Query: 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY 447
DLP A + + S GGSRRQ +QR GR +R +A Y L ++ + E +
Sbjct: 578 EGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLATRGSSEEEF 630
Query: 448 SRKRQRFLINQG 459
++++ R L +G
Sbjct: 631 AQRQMRHLGRKG 642
>gi|433590592|ref|YP_007280088.1| DNA/RNA helicase, superfamily II [Natrinema pellirubrum DSM 15624]
gi|448332004|ref|ZP_21521253.1| type III restriction protein res subunit [Natrinema pellirubrum DSM
15624]
gi|433305372|gb|AGB31184.1| DNA/RNA helicase, superfamily II [Natrinema pellirubrum DSM 15624]
gi|445628142|gb|ELY81452.1| type III restriction protein res subunit [Natrinema pellirubrum DSM
15624]
Length = 640
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L GF
Sbjct: 392 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGF 449
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y + ++ + N K +YL++ H K IV
Sbjct: 450 VAEPELEIRYVPWGDDEQQNAYASAEGQEKYRIAARNRGKIDEVRYLLSAHPEA--KAIV 507
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 508 FVDYLEQGRELSEALDVPFLSGETPHHERRRLLEEFRRDER-DLLLISRVGDEGIDLPTA 566
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ + E ++RK+ + L
Sbjct: 567 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGSREEDFARKQLQHL 619
Query: 456 INQGYSYK 463
+G + +
Sbjct: 620 GRKGITVR 627
>gi|424812223|ref|ZP_18237463.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756445|gb|EGQ40028.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalinarum sp.
J07AB56]
Length = 540
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 6/205 (2%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH IP+K+FR+ ++ QS ++GL+A+ +RED K ++ LIG ++ +W + +
Sbjct: 302 EVHHIPSKLFRKTASL-QSTRRIGLSASPVREDSKEREIFALIGREIG-GDWARFFDQDY 359
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + +++R +Y ++ ++ NP K + +E KTIV
Sbjct: 360 VLKPDVDIHFVDWESDYHRMKYQKASGFEKAIIASKNPAKMPMIGEFLEEYE--DSKTIV 417
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + A + + P+I G T ER + + ++ +++T+ VS++ D DLP+A
Sbjct: 418 FCDWIEQGEKLAEEFDLPFINGETDYDEREEYFERYR-EGEIDTVIVSRIGDEGLDLPDA 476
Query: 396 NVLIQISSHGGSRRQEAQRLGRILR 420
V I S GGSRRQ QR GR++R
Sbjct: 477 EVGIVASGQGGSRRQATQRAGRVMR 501
>gi|452211505|ref|YP_007491619.1| DNA repair helicase [Methanosarcina mazei Tuc01]
gi|452101407|gb|AGF98347.1| DNA repair helicase [Methanosarcina mazei Tuc01]
Length = 457
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 124/258 (48%), Gaps = 32/258 (12%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +R + + C+LGLTAT RED +LN L+G K+YE EL G
Sbjct: 185 EVHHLPAAGYRSIAEFSAAPCRLGLTATYEREDGLHTELNRLVGGKVYEKKVSELAG-GH 243
Query: 277 IARVQCAEVWCPMSPEFYREY---------LVCKTS------KRLL-------LYVMNPN 314
+A V ++ E +EY LV K+ K LL L + +
Sbjct: 244 LAPYTIKRVSIALTDEEQKEYEKKYSVLQKLVMKSGRDPEARKALLARNAARDLAFNSDS 303
Query: 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLN 374
K + ++ H R D+ +F+++ + + P I T ER IL+ F+
Sbjct: 304 KIEKLREILEQH--RDDRIFIFTEHNRLVHRISNSFFIPAITYRTPSKERSSILEKFR-E 360
Query: 375 PKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFF 434
+ + SKV D D+PEAN+ I I+S GS+R QRLGRILR K+G A
Sbjct: 361 GRYRAVVTSKVLDEGIDVPEANIGI-IASGTGSKRAYVQRLGRILRKKEGK-----EAVL 414
Query: 435 YTLVSQDTMEMSYSRKRQ 452
Y +++++T E +++R+
Sbjct: 415 YEIIAEETTETGTAKRRK 432
>gi|448429815|ref|ZP_21584680.1| type III restriction protein res subunit [Halorubrum tebenquichense
DSM 14210]
gi|445689871|gb|ELZ42095.1| type III restriction protein res subunit [Halorubrum tebenquichense
DSM 14210]
Length = 661
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 29/261 (11%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H I A ++ R + QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 402 EAHHITAPVYSRTAEL-QSKHRLGLSATPVSETGSEEEIYTLIGGPI-GADWDSLFEAGF 459
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E + EY +R + NP K +YL+A H R K +V
Sbjct: 460 VQEPEVEIRYVPWRDELAQSEYAAADGRERRRVAAENPAKIEEIRYLLAAH--RDKKALV 517
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL-----------------NPKVN 378
F + + A ++ P+I G T ER ++ + F+ + ++
Sbjct: 518 FVEYLDHGNAIADALDAPFISGETPHHERAELFRRFRAEEGDADGDNTEETDGARDDDLD 577
Query: 379 TIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLV 438
+ VS+V D DLP A + + S GGSRRQ +QR GR +R +A Y L
Sbjct: 578 VLVVSRVGDEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLA 630
Query: 439 SQDTMEMSYSRKRQRFLINQG 459
++ + E +++++ R L +G
Sbjct: 631 TRGSSEEEFAQRQMRHLGRKG 651
>gi|448399557|ref|ZP_21570817.1| type III restriction protein res subunit [Haloterrigena limicola
JCM 13563]
gi|445668574|gb|ELZ21201.1| type III restriction protein res subunit [Haloterrigena limicola
JCM 13563]
Length = 638
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L + GF
Sbjct: 394 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFEAGF 451
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K IV
Sbjct: 452 VAEPELEIRYVPWGDDEQANAYGSADGREKYRIAAKNRGKIDEVRYLLSAHPDA--KAIV 509
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + + P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 510 FVDYLEQGRELSDALEVPFLSGETPHHERRRLLEEFRRDER-DLLIISRVGDEGIDLPTA 568
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 569 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 621
Query: 456 INQGYSYK 463
+G + +
Sbjct: 622 GRKGMTIR 629
>gi|159465889|ref|XP_001691150.1| hypothetical protein CHLREDRAFT_181520 [Chlamydomonas reinhardtii]
gi|158269032|gb|EDO95757.1| predicted protein [Chlamydomonas reinhardtii]
Length = 142
Score = 99.4 bits (246), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/103 (47%), Positives = 71/103 (68%)
Query: 322 LIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381
+IA+ +R +++ + + + + + M++ ++ R ++L FK NP +NT+F
Sbjct: 11 MIAFSGKRSEESERIMNIIRSREWGLLLMDEVHVVPAQMFRTRTRVLHAFKHNPDINTVF 70
Query: 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG 424
+SKV D S D+PEANVLIQISSH GSRRQEAQRLGRILRAK+G
Sbjct: 71 LSKVGDNSLDIPEANVLIQISSHAGSRRQEAQRLGRILRAKRG 113
Score = 46.2 bits (108), Expect = 0.048, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 33/39 (84%)
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+LVTT++MI+ + KRS E+++ M ++++EWG++L+D+
Sbjct: 3 GVLVTTFTMIAFSGKRSEESERIMNIIRSREWGLLLMDE 41
>gi|119720665|ref|YP_921160.1| type III restriction enzyme, res subunit [Thermofilum pendens Hrk
5]
gi|119525785|gb|ABL79157.1| DNA repair helicase RAD25 [Thermofilum pendens Hrk 5]
Length = 451
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 131/278 (47%), Gaps = 49/278 (17%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +P+ +R+V + + ++GLTAT RED L +L+GP +Y E+ + +
Sbjct: 180 EVHHLPSPGYRQVAELSAAPWRMGLTATPEREDGLHELLPYLVGPVVYRRGVGEMAGK-W 238
Query: 277 IARVQCAEVWCPMSPEFYREY-LVCKTSKRLL------------------LYVMNPNK-- 315
+A V+ MSPE EY + +T + L L V +P
Sbjct: 239 LAEFDVVRVYAEMSPEEREEYERLTRTYRSFLRKRGLRIRGPRDFERLAALSVKDPEARE 298
Query: 316 -----YRA-------------TQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYG 357
YRA + L+A H RGDK ++F+++ ++ + + P I
Sbjct: 299 ALLAWYRARRIALHASSKMEVLEELLARH--RGDKVLIFAEHGDVVRRISSRFLVPEITY 356
Query: 358 PTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGR 417
T + ER ++ F+ V I SKV + D+P+ANV + I S SRR+ QRLGR
Sbjct: 357 RTPEEERRAVMSAFR-KGLVRAIVTSKVLEEGVDVPDANVAV-ILSGTASRREFVQRLGR 414
Query: 418 ILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+LR ++G A Y +V+ T E+ SRKR++ L
Sbjct: 415 VLRPREGK-----RAVVYEVVTSGTKEVEISRKRRKAL 447
>gi|448493730|ref|ZP_21609161.1| type III restriction protein res subunit [Halorubrum californiensis
DSM 19288]
gi|445689906|gb|ELZ42128.1| type III restriction protein res subunit [Halorubrum californiensis
DSM 19288]
Length = 637
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 29/261 (11%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH + ++ R QS +LGL+AT + E ++ LIG + A+W L + GF
Sbjct: 378 EVHHVTGPVYSRTAEF-QSRHRLGLSATPVSETGSEEEIYTLIGQPI-GADWDSLFEAGF 435
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 436 VQEPEVEIRYVPWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH--RDKKALV 493
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKL-----------------NPKVN 378
F + + + A ++ P+I G T ER ++ + F+ + ++
Sbjct: 494 FVEYLDHGRAIADALDAPFISGETPHHERAELFRRFRAADGDATEGEEDSAGARDDDALD 553
Query: 379 TIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLV 438
+ VS+V D DLP A + + S GGSRRQ +QR GR +R +A Y L
Sbjct: 554 VLVVSRVGDEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG-------SALVYVLA 606
Query: 439 SQDTMEMSYSRKRQRFLINQG 459
++ + +++++ R L +G
Sbjct: 607 TRGSSGEEFAQRQMRHLGRKG 627
>gi|448336883|ref|ZP_21525970.1| type III restriction protein res subunit [Natrinema pallidum DSM
3751]
gi|445627221|gb|ELY80546.1| type III restriction protein res subunit [Natrinema pallidum DSM
3751]
Length = 636
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L G
Sbjct: 392 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGH 449
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K IV
Sbjct: 450 VAEPELEIRYVPWGDDEQANAYGSADGREKYRIAARNRGKIDEVRYLLSAHPDA--KAIV 507
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + ++ P++ G T ER ++L+ F+ N + + + +S+V D DLP A
Sbjct: 508 FVDYLEQGGELSEALDVPFLSGETPHHERRRLLEEFRRNER-DLLLISRVGDEGIDLPTA 566
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 567 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 619
Query: 456 INQGYSYK 463
+G + +
Sbjct: 620 GRKGMTVR 627
>gi|356524307|ref|XP_003530771.1| PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase
1-like [Glycine max]
Length = 600
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 218 VHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFI 277
VH +PA MFR+V +I +SHCK+GLTATL+RED++I DLNFLIGPKLYEANWL+ K GFI
Sbjct: 499 VHVVPALMFRKVNSITKSHCKIGLTATLVREDERITDLNFLIGPKLYEANWLDPVKGGFI 558
Query: 278 A 278
A
Sbjct: 559 A 559
>gi|397773187|ref|YP_006540733.1| type III restriction protein res subunit [Natrinema sp. J7-2]
gi|397682280|gb|AFO56657.1| type III restriction protein res subunit [Natrinema sp. J7-2]
Length = 636
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L G
Sbjct: 392 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGH 449
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K IV
Sbjct: 450 VAEPELEIRYVPWGDDEQANAYGSADGREQYRIAARNRGKVDEVRYLLSAHPDA--KAIV 507
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 508 FVDYLAQGRELSEALDVPFLSGETPHHERRRLLEEFRRDER-DLLLISRVGDEGIDLPTA 566
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 567 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 619
Query: 456 INQGYSYK 463
+G + +
Sbjct: 620 GRKGMTVR 627
>gi|448340839|ref|ZP_21529808.1| type III restriction protein res subunit [Natrinema gari JCM 14663]
gi|445629445|gb|ELY82728.1| type III restriction protein res subunit [Natrinema gari JCM 14663]
Length = 636
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L G
Sbjct: 392 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGH 449
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K IV
Sbjct: 450 VAEPELEIRYVPWGDDEQANAYGSADGREQYRIAARNRGKVDEVRYLLSAHPDA--KAIV 507
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 508 FVDYLAQGRELSEALDVPFLSGETPHHERRRLLEEFRRDER-DLLLISRVGDEGIDLPTA 566
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 567 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 619
Query: 456 INQGYSYK 463
+G + +
Sbjct: 620 GRKGMTVR 627
>gi|448346033|ref|ZP_21534922.1| type III restriction protein res subunit [Natrinema altunense JCM
12890]
gi|445633966|gb|ELY87153.1| type III restriction protein res subunit [Natrinema altunense JCM
12890]
Length = 636
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 13/248 (5%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E +P+ ++RR T +QS +LGL+A+ +REDD+ ++ L+GP + +W L G
Sbjct: 392 ECQHVPSDVYRRS-THLQSKHRLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGH 449
Query: 277 IARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + P E Y ++ + N K +YL++ H K IV
Sbjct: 450 VAEPELEIRYVPWGDDEQANAYGSADGREKYRIAARNRGKIDEVRYLLSAHPDA--KAIV 507
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F D + + + ++ P++ G T ER ++L+ F+ + + + + +S+V D DLP A
Sbjct: 508 FVDYLEQGRDLSEALDVPFLSGETPYHERRRLLEEFRRDER-DLLLISRVGDEGIDLPTA 566
Query: 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
++ I S GGSRRQ QR GR +R GA+ Y L ++ T E ++RK+ + L
Sbjct: 567 DLAIVASGLGGSRRQGTQRAGRTMRPAGGAL-------VYVLATRGTREEDFARKQLQHL 619
Query: 456 INQGYSYK 463
+G + +
Sbjct: 620 GRKGMTVR 627
>gi|423436590|ref|ZP_17413571.1| hypothetical protein IE9_02771 [Bacillus cereus BAG4X12-1]
gi|401122326|gb|EJQ30113.1| hypothetical protein IE9_02771 [Bacillus cereus BAG4X12-1]
Length = 552
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 130/250 (52%), Gaps = 10/250 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
+ H +PAK + R + I Q+ +L L +TL R D++ A + L+GPK YE EL ++G+
Sbjct: 299 DAHKLPAKTYERTIEI-QTRYRLALASTLARADEQGAKVFALVGPKWYEILHQELIRKGY 357
Query: 277 IARVQCAEVWCPMSPEFYREY--LVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
+ C E+ P+S E ++Y T+K+ L N K + L+ + ++ +T+
Sbjct: 358 SVPITCIEMRIPLSTEMKQQYNSYGNNTNKKRELAAFNTQKDNIVKELLMKYTKK--QTV 415
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
+ S ++ Y + IYG + + + +++ F + +++ +S + L
Sbjct: 416 ITSYRTELIEKYRKLFDIDSIYGKSDEKQNEVLIKQFN-DRQISCCNISSLKAEKVLLKG 474
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
V+I S GS R+E R+G++L ++G EE F Y+LVS T+E + RKR+
Sbjct: 475 VEVIIATSYQQGSEREEYLRVGKLLPKEEG--KEE--GFLYSLVSDGTIEENDYRKRRVS 530
Query: 455 LINQGYSYKV 464
L++ G+ YKV
Sbjct: 531 LLHYGFPYKV 540
>gi|322371366|ref|ZP_08045916.1| DNA repair helicase Rad25 [Haladaptatus paucihalophilus DX253]
gi|320549034|gb|EFW90698.1| DNA repair helicase Rad25 [Haladaptatus paucihalophilus DX253]
Length = 546
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E IP+++FRR + QS +LGL+AT +REDDK D+ LIGP + +W L + GF
Sbjct: 358 ECQHIPSRVFRRSADL-QSKHRLGLSATPVREDDKEKDIFTLIGPPIG-TDWDALFEAGF 415
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+A + + E Y EY + + NP K ++L+A H K +V
Sbjct: 416 VAEPEVEIRYVGWDEETYHGEYANADGRGKRRIAATNPAKLDEIRFLLAEHP--TSKALV 473
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395
F + + A ++ P++ G +ER + LQ F+ + + +T+ +S+V D DLP+A
Sbjct: 474 FVEYLEQGDRIAEALDVPFLSGQMRHAERERHLQAFR-DGREDTLVISRVGDEGIDLPDA 532
Query: 396 NVLIQISSHGGSRR 409
+ I S GGSRR
Sbjct: 533 EIAIVASGLGGSRR 546
>gi|448454819|ref|ZP_21594299.1| type III restriction protein res subunit [Halorubrum lipolyticum
DSM 21995]
gi|445814502|gb|EMA64464.1| type III restriction protein res subunit [Halorubrum lipolyticum
DSM 21995]
Length = 646
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
E H I A +F + + H +LGL+AT +RE ++ LIG + A+W L + GF
Sbjct: 394 EAHHITAPIFSQSAELQAKH-RLGLSATPVRETGSEEEIYTLIG-RPIGADWDALFEAGF 451
Query: 277 IARVQCAEVWCPMSPEFYR-EYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335
+ + + P E R EY +R L NP K +YL+A H R K +V
Sbjct: 452 VQEPEVEIRYVPWRDEMARNEYASADGRERRRLAAENPAKIEEIRYLLAAH--RDKKALV 509
Query: 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNF----------KLNPKVNTIFVSKV 385
F + + + A + P+I G T +R + + F + V+T+ VS+V
Sbjct: 510 FIEYLDQGEAIADALGVPFISGETPHRDRREFFRRFREDGDGPSADRDRDDVDTLVVSRV 569
Query: 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
D DLP A + I S GGSRRQ +QR GR +R +A Y L ++ + E
Sbjct: 570 GDEGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPAG-------SALVYVLATRGSSEE 622
Query: 446 SYSRKRQRFLINQG 459
+++++ R L +G
Sbjct: 623 EFAQRQMRHLARKG 636
>gi|14279304|gb|AAK58563.1|AF265295_1 Rad25-like protein [Methanosarcina thermophila]
Length = 489
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 71/398 (17%)
Query: 113 RSWEADQTMQWLQNQEWGIMLLDDG-----VPVAAKKNVEKDDAAVPEDEFGAKDYRAQM 167
R ++A+ + W +N +WG+++L G V + A V + ++ Q+
Sbjct: 79 RDYQAEALVSWGENDKWGVLVLPTGSGKTLVGIRAIAGCNTPALVVVPTLDLLEQWKKQL 138
Query: 168 VLKPDHKSRPLWVAPNGH-----IFLESFSPVYRHA----HDFLIAIAEPVCRPEHIHEV 218
+ S + G I + ++ Y HA + F + I EV
Sbjct: 139 ---EEAFSMEIGKLGGGEKKILPITVSTYDSAYIHAEILGNRFGLLI---------FDEV 186
Query: 219 HTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIA 278
H +PA +R + + C+LGLTAT RED +LN L G K+YE EL G +A
Sbjct: 187 HHLPAVGYRSIAEFFAAPCRLGLTATYEREDGLHTELNRLAGGKVYEKKVSELAG-GHLA 245
Query: 279 RVQCAEVWCPMSPEFYREY-----LVCKTSKRLLLYVMNPNKYR-----------ATQYL 322
++ REY + K+ L + P +R A + L
Sbjct: 246 PYTIKRTSVTLTAGEQREYDRNYSVFLNYLKKTGLIMRGPQDFRKLVMKSGRDPEARKAL 305
Query: 323 IA---------------------YHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQ 361
+A E R D+ +F+++ + + P I T
Sbjct: 306 LARNAARDLAFNSDSKIEKLREILEEHREDRVFIFTEHNRLVHRISNTFFIPAITYRTPS 365
Query: 362 SERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA 421
ER IL+ F++ + SKV D D+PEANV + I S GS+R QRLGRILR
Sbjct: 366 KERNSILEKFRIG-SYRAVVTSKVLDEGIDVPEANVGV-IVSGTGSKRAYVQRLGRILRK 423
Query: 422 KKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQG 459
K+G A Y +++ +T E +++R+ L N G
Sbjct: 424 KEGK-----KAVLYEIIASETSETGTAQRRKEALDNAG 456
>gi|21229102|ref|NP_635024.1| DNA repair helicase [Methanosarcina mazei Go1]
gi|20907658|gb|AAM32696.1| DNA repair helicase [Methanosarcina mazei Go1]
Length = 474
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 45/273 (16%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +R + S C+LGLTAT RED +LN L+G K+YE EL G
Sbjct: 185 EVHHLPATGYRSIAEFSASPCRLGLTATYEREDGLHTELNRLVGGKVYEKKVSELAG-GH 243
Query: 277 IARVQCAEVWCPMSPEFYREY---------------LVCKTSKRLLLYVMNPNK-YRATQ 320
+A V ++ E +EY ++ ++ + VM + A +
Sbjct: 244 LAPYTIKRVSVALTDEEQKEYEKKYSVFLDYLRKTGMIMRSPQDFQKLVMKSGRDPEARK 303
Query: 321 YLIA---------------------YHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPT 359
L+A + R D+ +F+++ + + P I T
Sbjct: 304 ALLARNAARDLAFNSDSKIEKLREILEQHRDDRIFIFTEHNRLVHRISNSFFIPAITYRT 363
Query: 360 SQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRIL 419
ER IL+ F+ + + SKV D D+PEAN+ I I+S GS+R QRLGRIL
Sbjct: 364 PSKERSSILEKFR-EGRYRAVVTSKVLDEGIDVPEANIGI-IASGTGSKRAYVQRLGRIL 421
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452
R K+G A Y +++++T E +++R+
Sbjct: 422 RQKEGK-----EAVLYEIIAEETTETGTAKRRK 449
>gi|170291163|ref|YP_001737979.1| type III restriction protein res subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175243|gb|ACB08296.1| type III restriction protein res subunit [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 492
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 24/250 (9%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA F+ V ++ +LGL+AT R D + G +Y ++ EL RGF
Sbjct: 234 EVHHVPASTFKEVAFRSKAKYRLGLSATPERADGNDHLIFLTSGEIVYRISFPELLSRGF 293
Query: 277 IARVQCAEVWCPMSPEFYRE-----YLVCKTSKRLLL---YVMNP-NKYRATQYLIAYHE 327
+A V+ ++ +S E RE +L +R L+ Y + NK R + L E
Sbjct: 294 LAPVRHHIIYVDLSDEERREMSRELFLARNDDERKLIEKKYALKAKNKIR--EVLRIMEE 351
Query: 328 RRGDKTIVFSDNVFALKHYAVKMNKPY----IYGPTSQSERIQILQNFKLNPKVNTIFVS 383
+ K ++F++ + + ++ K Y + G TS R +I + FK ++N I +
Sbjct: 352 VKDRKVLIFTEYIDQAEEIYRELRKRYKVELMIGKTSG--RSEIFERFK-RGEINVIVTT 408
Query: 384 KVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443
+V D D+P+A+V I I S GSRRQ AQR+GR++R G +A+ Y +V++ T+
Sbjct: 409 RVLDEGIDVPDADVAI-IVSGSGSRRQMAQRVGRVVRGAPGKVAD-----VYEIVTRGTI 462
Query: 444 EMSYSRKRQR 453
E SR R+R
Sbjct: 463 EEKLSRVRRR 472
>gi|305663464|ref|YP_003859752.1| type III restriction protein res subunit [Ignisphaera aggregans DSM
17230]
gi|304378033|gb|ADM27872.1| type III restriction protein res subunit [Ignisphaera aggregans DSM
17230]
Length = 556
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 125/273 (45%), Gaps = 39/273 (14%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
I EVH +PA FR + + + +LGL+AT++RED + DL L+G +Y + EL ++
Sbjct: 278 IDEVHHLPADKFRYIAENMFARKRLGLSATVIREDGRHVDLFPLMGGIVYSKSVSELAEK 337
Query: 275 GFIARVQCAEVWCPMSPEF---YREYL----------------------------VCKTS 303
G+IA + ++ E YR+ L KT
Sbjct: 338 GYIAPFTVKTIKVSLTKEEKEKYRKLLEKYKKLAGGREFQTLLEDAKRGDVAALEALKTR 397
Query: 304 KRLLLYVMNP-NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQS 362
+ V N K A + ++ K IVF+ + + A +N YI G +
Sbjct: 398 AEIRSLVHNAKEKIEALKAIVNRELENNSKIIVFTQYIEQAEKLAEILNTVYITGELDED 457
Query: 363 ERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422
R + L+ FK N V I ++ V D D+P+ANV I I + GSRRQ QRLGR+LR
Sbjct: 458 TRRRRLEMFK-NNMVKIIVLTTVGDEGIDIPDANVGI-IFAGTGSRRQFIQRLGRLLRPM 515
Query: 423 KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
G A Y ++ + T E + +RKR++ L
Sbjct: 516 PGK-----EARLYEIIVKGTFEEAEARKRKKAL 543
>gi|126465860|ref|YP_001040969.1| DNA repair helicase RAD25 [Staphylothermus marinus F1]
gi|126014683|gb|ABN70061.1| DNA repair helicase RAD25 [Staphylothermus marinus F1]
Length = 548
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 128/278 (46%), Gaps = 42/278 (15%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA FR + S ++GL+AT +RED + +L L+G +Y + EL
Sbjct: 276 VDEVHHLPADKFRYIAIHSISRYRMGLSATPVREDGRHEELFPLLGGIIYYRSAAELANM 335
Query: 275 GFIARVQCAEVWCPMS-------PEFYREYLVCKTSK----------------------- 304
G++AR + + + + + Y V +
Sbjct: 336 GYLARYRVLTIKVGLRKDEKKLFEDLRKTYKVLSGGRSFNEVLDSALKGDEKAKNALRIH 395
Query: 305 ---RLLLYVMNPNKYRATQYLIAYHE-RRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTS 360
R++L +A + IA E RRG K I+F+ + K A K+N + G
Sbjct: 396 NQMRMILAKSKSKIDKAVE--IAEKEYRRGSKIIIFTQYIEQAKEIAEKLNAYLLTGEVP 453
Query: 361 QSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILR 420
+R ++L+ FK N + V+ V D D+P+ANV I I S GSRRQ QRLGRILR
Sbjct: 454 VEKRKRVLEEFK-NRDNGILVVTTVGDEGLDIPDANVGI-IVSGTGSRRQFIQRLGRILR 511
Query: 421 AKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQ 458
K + A Y +V + T E ++RKR+R +++
Sbjct: 512 PKPNGV----EARLYEIVLEKTPEEYHARKRKRVDLDE 545
>gi|383320765|ref|YP_005381606.1| DNA repair helicase RAD25 [Methanocella conradii HZ254]
gi|379322135|gb|AFD01088.1| DNA repair helicase RAD25 [Methanocella conradii HZ254]
Length = 446
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 172/408 (42%), Gaps = 78/408 (19%)
Query: 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDG-----VPVAAKKNVEKDDAAVP 154
LV + + T R ++ W + WG+++L G V + A VP
Sbjct: 59 LVPSPELKMRTVLRDYQERAVSAWDRAGRWGVVVLPTGAGKTHVAMKAISMANPAIVVVP 118
Query: 155 ------------EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFL 202
EDEFG + +H P+ VA ++ + R FL
Sbjct: 119 TLDLLAQWKERLEDEFGID---VGVYSGDEHSLGPVTVATYDTAYIRAAELGNR----FL 171
Query: 203 IAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPK 262
+A+ + EVH +P+ + + + +LGLTAT RED + ++L L+G K
Sbjct: 172 LAVFD---------EVHHLPSTGYSTIAEMFACPARLGLTATYEREDGRHSELPRLVGGK 222
Query: 263 LYEANWLELQKRGFIARVQCAEVWCPMSP----------EFYREYL-----VCKTSKRLL 307
++E + +E K +A + ++ ++P E Y+ YL + +T +
Sbjct: 223 VFEKS-VESLKGEHLAPFELKRIYVRLTPEEEAQYQKDMEIYKNYLKENHIILRTPRDFE 281
Query: 308 LYVMNPNKYR-ATQYLIAYHERR---------------------GDKTIVFSDNVFALKH 345
VM + R A + ++A H R GDK ++F+++ +
Sbjct: 282 RLVMRSGRDRHAREAILARHRARAVALNSSSKLEALADVLRKHSGDKVLIFTEHNELVYR 341
Query: 346 YAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG 405
+ + P+I T ER + L FK + SKV D D+P+A+V I I S
Sbjct: 342 ISRQFLIPFITYKTGGEERSRNLAEFKAG-NYRALVTSKVLDEGVDVPDASVGI-ILSGS 399
Query: 406 GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
GS+R+ QRLGRILR KKG + A Y ++S T E+ S +R R
Sbjct: 400 GSKREFVQRLGRILR-KKG----DKKAVLYEIISGSTSEVKTSYRRHR 442
>gi|302788834|ref|XP_002976186.1| hypothetical protein SELMODRAFT_416209 [Selaginella moellendorffii]
gi|300156462|gb|EFJ23091.1| hypothetical protein SELMODRAFT_416209 [Selaginella moellendorffii]
Length = 137
Score = 94.4 bits (233), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 51/65 (78%)
Query: 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAK 224
+++ LKPDHK RPLWV P+GHIFL++FSP+++ A+ FLI AEPVC+PEH+HE + P
Sbjct: 31 SKLELKPDHKKRPLWVGPDGHIFLKTFSPLHKQAYGFLIVTAEPVCQPEHMHEYNLTPHP 90
Query: 225 MFRRV 229
++ V
Sbjct: 91 LYPAV 95
>gi|320101410|ref|YP_004177002.1| DNA repair helicase RAD25 [Desulfurococcus mucosus DSM 2162]
gi|319753762|gb|ADV65520.1| DNA repair helicase RAD25 [Desulfurococcus mucosus DSM 2162]
Length = 561
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 124/277 (44%), Gaps = 41/277 (14%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
I EVH +PA+ FR + + ++GL+AT RED + +L L+G +Y +L
Sbjct: 285 IDEVHHLPAEKFRHIAVHSIARYRMGLSATPFREDGRHEELFPLLGGVVYYKTPNDLVSM 344
Query: 275 GFIARVQCAEVWCPMS-------PEFYREYLVCKTSKRLLLYVMNP-NKYRATQYLIAYH 326
G++AR + V +S E R+Y S+ V + RA + L +
Sbjct: 345 GYLARYRVVTVKTRLSGEERKAYEELRRKYWALAGSRDFKQVVEDARTDPRAREALRVHS 404
Query: 327 ERR-----------------------GDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSE 363
+ R G K IVF+ V + + ++N + G E
Sbjct: 405 QMRSILARAKAKIDKAVEIARSELEKGGKIIVFTQYVDQAREISERLNAYLLTGEIPTEE 464
Query: 364 RIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 423
R +IL+ FK N + V+ V D D+P+ANV I +S G SRRQ QRLGR+LR K
Sbjct: 465 RKRILEEFK-NTDKGILVVTTVGDEGLDIPDANVGIMVSGTG-SRRQFIQRLGRLLRPKP 522
Query: 424 GAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGY 460
G A Y ++ + T E +RKR+ N G+
Sbjct: 523 GG----KEAVLYEIILEKTSEEYQARKRK----NMGF 551
>gi|332797089|ref|YP_004458589.1| nucleotide excision repair helicase, Xpb1 [Acidianus hospitalis W1]
gi|332694824|gb|AEE94291.1| nucleotide excision repair helicase, Xpb1 [Acidianus hospitalis W1]
Length = 544
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 133/304 (43%), Gaps = 54/304 (17%)
Query: 185 HIFLESFSPVYRHA------HDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCK 238
I L ++ +RH D LI I E H +PA FR V + + +
Sbjct: 241 QITLSTYQTAFRHVSELSDKFDLLI-----------IDEAHHLPADKFREVALGILATKR 289
Query: 239 LGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYL 298
LGL+AT RED + +L L+G +Y EL K+G++A +V ++ E ++YL
Sbjct: 290 LGLSATPFREDGRHEELFKLMGGIVYYKPVDELIKKGYLAPYDIVQVKVFLTTEERKKYL 349
Query: 299 VCKTSKRLL--------LYVMNPN-KYRATQYLIAYHE---------------------R 328
R+L L V+ N A + L Y+E
Sbjct: 350 TLLNKFRVLSKNKKLKELIVLAKNGDNNAIEALKVYNEIKKVVNFAQNKMLKIEEILNKE 409
Query: 329 RGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADT 388
+G K ++F+ V + A + N I G S++ER +IL FK K + ++ V D
Sbjct: 410 KGKKILIFTQYVDQAEEIARRFNTLLISGKMSKNERKKILDTFKF-MKSGILTLTTVGDE 468
Query: 389 SFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS 448
D+P+A+V I I + SRRQ QRLGRILR G A Y ++ T E S
Sbjct: 469 GLDIPDASVGI-IVTGTSSRRQFIQRLGRILRPVNGK-----RAILYEIIVSGTQEEYQS 522
Query: 449 RKRQ 452
+KR+
Sbjct: 523 KKRK 526
>gi|378756456|gb|EHY66480.1| DNA repair helicase rad25 [Nematocida sp. 1 ERTm2]
Length = 347
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+ A CT+++ L+LC + VSVEQWK Q K ++ D I TS+ K+K G
Sbjct: 237 AGKTLVGIVALCTMKRSCLILCTTSVSVEQWKQQIKHFTNVKDESIAILTSDTKEKFTGQ 296
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIM 132
GI+V+TY+M+S++ KRS+E + M +L N + G++
Sbjct: 297 AGIVVSTYTMVSYSGKRSYETQKIMDFLTNTDGGLL 332
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
++LK +H +RP+WV+ +G I LE S + A DFLIAIAEPV RP ++HE
Sbjct: 17 IILKENHAARPMWVSADGVIILEMHSEQSQQAQDFLIAIAEPVTRPCNMHE 67
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,717,379,780
Number of Sequences: 23463169
Number of extensions: 369561870
Number of successful extensions: 4102212
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3830
Number of HSP's successfully gapped in prelim test: 594
Number of HSP's that attempted gapping in prelim test: 3955522
Number of HSP's gapped (non-prelim): 92928
length of query: 552
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 404
effective length of database: 8,886,646,355
effective search space: 3590205127420
effective search space used: 3590205127420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)