BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11640
(552 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Drosophila melanogaster
GN=hay PE=1 SV=2
Length = 798
Score = 576 bits (1485), Expect = e-163, Method: Compositional matrix adjust.
Identities = 276/344 (80%), Positives = 308/344 (89%), Gaps = 7/344 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 516 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVG---- 510
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE G
Sbjct: 696 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 755
Query: 511 GVSGGFKRSGGTMASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
G G +R GG ++S+SG DDA+Y+E R N+ HPLFKKFRG
Sbjct: 756 GSGGAVRRVGG-LSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRG 798
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 88/126 (69%)
Query: 111 QKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170
+KR E + Q + + + +G+P AA KN E +D + DE+GAKDYR+QM L+
Sbjct: 19 KKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLR 78
Query: 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL 230
PDH +RPLWVAPNGH+FLESFSPVY+HAHDFLIAI+EPVCRPEHIHE ++ V
Sbjct: 79 PDHGNRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVS 138
Query: 231 TIVQSH 236
+Q+H
Sbjct: 139 VGLQTH 144
>sp|Q4G005|ERCC3_RAT TFIIH basal transcription factor complex helicase XPB subunit
OS=Rattus norvegicus GN=Ercc3 PE=2 SV=1
Length = 782
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 262/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSLSGADDTVYMEYHSSRNKASTKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>sp|P49135|ERCC3_MOUSE TFIIH basal transcription factor complex helicase XPB subunit
OS=Mus musculus GN=Ercc3 PE=2 SV=1
Length = 783
Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/343 (76%), Positives = 297/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 441 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 501 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 560
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 561 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 620
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 621 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 680
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G SG
Sbjct: 681 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 739
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+SLSGADD VY E S K HPLFK+FR
Sbjct: 740 QASRRCGTMSSLSGADDTVYMEYHSSRSKASSKHVHPLFKRFR 782
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 345 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 404
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + A+
Sbjct: 405 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAR 450
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>sp|Q7ZVV1|ERCC3_DANRE TFIIH basal transcription factor complex helicase XPB subunit
OS=Danio rerio GN=ercc3 PE=2 SV=1
Length = 782
Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/346 (76%), Positives = 299/346 (86%), Gaps = 12/346 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 439 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 499 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 559 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 619 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 678
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE M +STRDEQ QLLQ+VLAAS+ DA+EE V GEVGG
Sbjct: 679 LVDQGYSFKVITKLAGMEEEDLM-FSTRDEQQQLLQKVLAASDLDAEEEVVMGEVGG-KP 736
Query: 515 GFKRSGGTMASLSGADDAVYHESRF---------SNVKHPLFKKFR 551
F R GTM+S+SGADDA+Y E + N+ HPLFK+FR
Sbjct: 737 QFSRRAGTMSSMSGADDALYMEYQMPRGSKASVGKNI-HPLFKRFR 781
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 343 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 402
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+++LD+ + AK
Sbjct: 403 SVAISTYSMLGHTTKRSWEAERVMEWMKSQEWGLIILDEVHTIPAK 448
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 34 EAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPLWVAPDGHIFLEAFSPVY 91
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AI+EPVCRP H HE ++ V +Q+
Sbjct: 92 KYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQT 131
>sp|Q1RMT1|ERCC3_BOVIN TFIIH basal transcription factor complex helicase XPB subunit
OS=Bos taurus GN=ERCC3 PE=2 SV=1
Length = 782
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSSRSKTSTKHVHPLFKRFR 781
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>sp|Q5RA62|ERCC3_PONAB TFIIH basal transcription factor complex helicase XPB subunit
OS=Pongo abelii GN=ERCC3 PE=2 SV=1
Length = 782
Score = 549 bits (1414), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAE VCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>sp|P19447|ERCC3_HUMAN TFIIH basal transcription factor complex helicase XPB subunit
OS=Homo sapiens GN=ERCC3 PE=1 SV=1
Length = 782
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>sp|Q60HG1|ERCC3_MACFA TFIIH basal transcription factor complex helicase XPB subunit
OS=Macaca fascicularis GN=ERCC3 PE=2 SV=1
Length = 782
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/343 (75%), Positives = 296/343 (86%), Gaps = 7/343 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE G S
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
R GTM+S+SGADD VY E S K HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>sp|Q5ZKK7|ERCC3_CHICK TFIIH basal transcription factor complex helicase XPB subunit
OS=Gallus gallus GN=ERCC3 PE=2 SV=1
Length = 788
Score = 517 bits (1332), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/340 (74%), Positives = 289/340 (85%), Gaps = 8/340 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKL LTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 437 LDEVHTIPAKMFRRVLTIVQAHCKLELTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 496
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 497 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 556
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 557 VFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 616
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 617 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 676
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VL AS+ DA+EE VAGE G S
Sbjct: 677 LVDQGYSFKVITKLAGMEEEE-LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSV 735
Query: 515 GFKRSGGTMASLSGADDAVYHESRFSNVK-------HPLF 547
R GTM+S+SGADDAVY E S K HPL
Sbjct: 736 QMSRRTGTMSSMSGADDAVYMEYHSSRSKASSNKHIHPLL 775
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+ C
Sbjct: 341 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDC 400
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+++EWG+M+LD+ + AK
Sbjct: 401 SIAISTYSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAK 446
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPLWVAP+GHIFLE+FSPVY
Sbjct: 33 EAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 91 KYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 130
>sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SSL2 PE=1 SV=1
Length = 843
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/351 (58%), Positives = 255/351 (72%), Gaps = 16/351 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE---RVAGEVGG 511
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E A E VG
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 785
Query: 512 VSGGFK-------RSGGTMASLSGADDAVYHESRFSNVK-----HPLFKKF 550
S G K R G+++ L+G +D Y E + K HPL +K
Sbjct: 786 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRKM 836
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P +G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 E 217
E
Sbjct: 172 E 172
>sp|O00835|ERCC3_DICDI TFIIH basal transcription factor complex helicase repB subunit
OS=Dictyostelium discoideum GN=repB PE=2 SV=1
Length = 800
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/353 (56%), Positives = 256/353 (72%), Gaps = 19/353 (5%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VLT+ ++HCKLGLTATLLRED+KI DLNFLIGPKLYEANWL+LQK
Sbjct: 443 LDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDEKIQDLNFLIGPKLYEANWLDLQKA 502
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKT-SKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A V C+EVWCPM+ EFY+EYL+ + K+ LLY MNPNK+RA +YLI +HE+RGDK
Sbjct: 503 GFLANVSCSEVWCPMTAEFYKEYLINDSQGKKKLLYTMNPNKFRACEYLIRFHEQRGDKI 562
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA + + +IYGPTS ER+ IL F+ +P V TIF+SKV DTS D+P
Sbjct: 563 IVFSDNVYALQKYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIP 622
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V+IQ+SSH GSRRQEAQRLGRILR K + YNAFFY+LVS+DT EM YS KRQ+
Sbjct: 623 EATVIIQVSSHYGSRRQEAQRLGRILRPKPKSDG-LYNAFFYSLVSKDTQEMYYSTKRQQ 681
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVS 513
FLI+QGYS+KVI++L G+++E + YS++ +Q LL QVL E E + + ++
Sbjct: 682 FLIDQGYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDIT 741
Query: 514 GGFKRS-----------GGTMASLSGADDAVYHESRFSNV------KHPLFKK 549
G K+S GG+ +LSG +D Y E + + +H LFK+
Sbjct: 742 RGAKKSKSSAPTVSRTTGGSTRALSGGNDMNYMEYQAPAIYKSIPTQHALFKQ 794
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSL G+TA CTV+K LVLC S VSVEQWK+QFKLWS ++ I +FTS+ K+K
Sbjct: 346 AGKSLSGITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNV 405
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G+ +TTY+M++ +RS E+ + M + N+EWG++LLD+ VP A + V
Sbjct: 406 AGVTITTYTMVAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKV 457
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTI 221
DY + +LK D+KSRP+WV P+GHIFLE+FS +Y+ A DFL+AIAEPVCRP++IHE
Sbjct: 65 DYSKRCILKQDNKSRPIWVCPDGHIFLETFSAIYKQASDFLVAIAEPVCRPQNIHEYQLT 124
Query: 222 PAKMFRRV 229
P ++ V
Sbjct: 125 PYSLYAAV 132
>sp|O13768|ERCC3_SCHPO Probable DNA repair helicase ercc3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ercc3 PE=1 SV=1
Length = 804
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 258/350 (73%), Gaps = 16/350 (4%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPK+YEANW++L ++
Sbjct: 449 LDEVHVVPAAMFRRVVTTIAAHTKLGLTATLVREDDKIDDLNFLIGPKMYEANWMDLAQK 508
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWC M+ EFY EYL + KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 509 GHIAKVQCAEVWCAMTTEFYNEYLRENSRKRMLLYIMNPKKFQACQFLIDYHEKRGDKII 568
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K +IYG T Q ER++IL+NF+ N VNTIF+SKV DTS DLPE
Sbjct: 569 VFSDNVYALRAYAIKLGKYFIYGGTPQQERMRILENFQYNELVNTIFLSKVGDTSIDLPE 628
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 629 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 687
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD----EERVAG--E 508
LI+QGY++KVIT L GME + Y+++ E+ +LLQ+VL +E AD E+ G
Sbjct: 688 LIDQGYAFKVITNLKGMENLPNLAYASKAERLELLQEVLLQNEEAADLDDGEDTSFGSRS 747
Query: 509 VGGVSGGFKRSGGTMASLSGADDAVYHESRFSNVK---------HPLFKK 549
+ KRS G++++L+GAD+ Y E S K H LF+K
Sbjct: 748 LSRAPAKAKRSSGSLSTLAGADNMAYVEYNKSANKQLKKDSKEHHALFRK 797
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF WS I FT++ K++
Sbjct: 352 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKPDHIAVFTADHKERFHSE 411
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
G++V+TYSM+++T+ RS+++ + M +L +EWG +LLD+ VP A + V
Sbjct: 412 AGVVVSTYSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRV 463
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + LK DH +RPLW+ P +G I LE+FSP+ A DFL+ I+EPV RP IH
Sbjct: 71 FGQNDFSNLLGLKLDHTARPLWINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIH 130
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 131 EYRITAYSLYAAV 143
>sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1
Length = 766
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 247/330 (74%), Gaps = 8/330 (2%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED+KI DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 527 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +VL A + E++
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVGLEQLE 706
Query: 507 GEVGGVSGGFKRSGGTMASLSGADDAVYHE 536
+ G + +RS G+M+++SGA+ VY E
Sbjct: 707 EDTDGKALKTRRSMGSMSAMSGANGRVYME 736
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW +QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+MI+ KRS EA++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDE 409
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228
LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE +HE + P ++
Sbjct: 57 LKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAA 116
Query: 229 V 229
V
Sbjct: 117 V 117
>sp|Q38861|XPB1_ARATH DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3
Length = 767
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/346 (56%), Positives = 255/346 (73%), Gaps = 11/346 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K
Sbjct: 407 MDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 466
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHE-RRGDK 332
GFIA VQCAEVWCPM+ EF+ EYL + S K+ LYVMNPNK+RA ++LI +HE +RGDK
Sbjct: 467 GFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 526
Query: 333 TIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392
IVF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+
Sbjct: 527 IIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDI 586
Query: 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKK------GAIAEEYNAFFYTLVSQDTMEMS 446
PEANV+IQISSH GSRRQEAQRLGRILRAK EEYNAFFY+LVS DT EM
Sbjct: 587 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMY 646
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVA 506
YS KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +V+ A + E++
Sbjct: 647 YSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLE 706
Query: 507 GEVGGVS-GGFKRSGGTMASLSGADDAVYHESRFSNVKHPLFKKFR 551
+ G++ +RS G+M+ +SG+ VY E +++ +H ++F+
Sbjct: 707 EDTDGMALQKARRSMGSMSVMSGSKGMVYME--YNSGRHKSGQQFK 750
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDE 409
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEH 214
E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEPVCRPE
Sbjct: 44 EGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 102
Query: 215 IHEVHTIPAKMFRRV 229
+HE + P ++ V
Sbjct: 103 MHEYNLTPHSLYAAV 117
>sp|C4V922|RAD25_NOSCE Probable DNA repair helicase RAD25 homolog OS=Nosema ceranae
(strain BRL01) GN=RAD25 PE=3 SV=1
Length = 659
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/329 (55%), Positives = 241/329 (73%), Gaps = 10/329 (3%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V+++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 329 LDEVHVVPAMMFRKVISLVTHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 388
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V+C EVWC M+ EFY+EYL+ + K+ LL +MNP K++A +YLI+ HE +GDK I
Sbjct: 389 GHIAKVECFEVWCGMTGEFYKEYLIQTSRKKRLLSIMNPTKFQACEYLISRHEAKGDKII 448
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 449 VFSDSVAALKSYALKLGKPFIYGPTGQTERMRILKQFQTNPLINTIFLSKVGDTSIDLPE 508
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ FFY+LVS+DT EM YS KRQ+F
Sbjct: 509 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVFFYSLVSKDTDEMFYSSKRQQF 567
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAAS--ETDADEERVAGEVGGV 512
L++QGYS+ +IT++ + + Y ++ +Q +LL VL +S E ++D E E+G
Sbjct: 568 LVDQGYSFNIITEIPEIYKNENRVYKSKSQQKELLVSVLLSSDKELESDTEADNEEIGVY 627
Query: 513 SGGFKRSGGTMASLSGADDAVYHESRFSN 541
SG K S +G D Y E+ N
Sbjct: 628 SGILKGS-------TGVDGMAYMETNERN 649
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 7/103 (6%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSE----AKDK 93
+GK+LVG+TA T++K L+LC S VSVEQW+ Q L++ ICRFTSE KDK
Sbjct: 232 SGKTLVGITALTTIKKSCLILCTSAVSVEQWRQQTMLFTNISGDNICRFTSEYKEWYKDK 291
Query: 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
CGI++TTY+M+++ KRS EA + M +Q+ EWG++LLD+
Sbjct: 292 ---CGIIITTYTMLAYNGKRSPEAQKIMDLIQSTEWGLLLLDE 331
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
+++LK DH++ LW+ + I LE+F + A DFLIAIAEPV RP++IHE +
Sbjct: 19 EIILKDDHENFSLWINYDALIILETFKQNSKQASDFLIAIAEPVSRPKYIHEYQITAYSL 78
Query: 226 FRRV 229
+ V
Sbjct: 79 YAAV 82
>sp|Q8SSK1|RAD25_ENCCU Probable DNA repair helicase RAD25 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RAD25 PE=3 SV=1
Length = 696
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 235/324 (72%), Gaps = 6/324 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRVL++V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 358 LDEVHVVPAMMFRRVLSLVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSAK 417
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARV C EVWC M+ +FYREYL T +R LL +MNP K++ +YLI HE RGDK I
Sbjct: 418 GHIARVSCIEVWCGMTGDFYREYLSQPTRRRRLLSIMNPTKFQVCEYLINKHESRGDKII 477
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+V+ALK YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NTIF+SKV DTS DLPE
Sbjct: 478 VFSDSVYALKAYALKLGKPFIYGPTGQTERMRILKQFQTNPVINTIFLSKVGDTSIDLPE 537
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ ++ +FY+LVS+DT EM YS KRQ+F
Sbjct: 538 ATCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPDFKVYFYSLVSKDTDEMFYSSKRQQF 596
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGVSG 514
LI+QGY++ ++T + + E Y T+ +Q +LL VL ASE + + E G V
Sbjct: 597 LIDQGYTFTILTDIPEVHENEHCVYKTKGQQRELLAGVLLASEKELESEESEDSEGIVYS 656
Query: 515 GFKRSGGTMASLSGADDAVYHESR 538
K + SLSG D+ Y E +
Sbjct: 657 TTK-----LKSLSGGDEMAYIERK 675
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPM-G 96
+GK++VG+TA T++K LVLC S VSVEQWK Q ++ + RFTS+ K+ P
Sbjct: 261 SGKTIVGITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDD 320
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
GI++TTY+M+++T KRS EA + M ++ EWG+++LD+
Sbjct: 321 SGIVITTYTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDE 360
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 147 EKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIA 206
E ++ +P+ + ++VLK D +S P+WV +G I LE+F R A DFLIAIA
Sbjct: 24 EMNEVVIPKKATKHQFPYEELVLKEDGESHPIWVNYDGLIILETFRESSRQASDFLIAIA 83
Query: 207 EPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258
EP+ RP IHE ++ V +GLT + + E NFL
Sbjct: 84 EPMSRPLQIHEFQITAYSLYAAV--------SVGLTTSDIIETLDRFSKNFL 127
>sp|A9CRJ7|RAD25_ENTBH Probable DNA repair helicase RAD25 homolog OS=Enterocytozoon
bieneusi (strain H348) GN=RAD25 PE=3 SV=1
Length = 609
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/289 (61%), Positives = 222/289 (76%), Gaps = 5/289 (1%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFR+V++ V CKLGLTATL+REDDKI DLNFLIGPKLYEANW +L +
Sbjct: 321 LDEVHVVPAQMFRKVVSSVLHQCKLGLTATLVREDDKIEDLNFLIGPKLYEANWQDLSDK 380
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+V+C+EVWC M+ EFYREYL+ TSK+ LL +MNP K + +YLI HE +GDK I
Sbjct: 381 GHIAKVECSEVWCEMTAEFYREYLIQDTSKKRLLSIMNPVKIQMCEYLIQKHEAQGDKII 440
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSD+VFALK YA+KM KP+IYGPTSQ+ER++IL+ F++N K+NT+F+SKV DTS DLPE
Sbjct: 441 VFSDSVFALKEYAIKMKKPFIYGPTSQTERMKILKQFQINSKINTLFLSKVGDTSIDLPE 500
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGR+LRAKK + A+FY+LVS+DT EM YS KRQ+F
Sbjct: 501 ATCLIQISSHFGSRRQEAQRLGRVLRAKKRN-NPNFKAYFYSLVSKDTEEMHYSAKRQQF 559
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQV----LAASETD 499
LI+QGYS+K I M Y T+ EQ +LL + L++ ETD
Sbjct: 560 LIDQGYSFKTIIGFNDMYYNETRLYKTKQEQKELLFNLLSKNLSSDETD 608
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK------ 91
+GK+LVG+TA T++K A++LC S VSVEQWK L++T + + RFTS+ K
Sbjct: 217 SGKTLVGITAISTIKKSAIILCTSAVSVEQWKQSILLFTTINPYSVSRFTSDCKEWFENY 276
Query: 92 --DKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ GIL+TTYSM+S + KRS++ + + + WGIM+LD+ V A+
Sbjct: 277 NVENTSQGGILITTYSMLSFSGKRSYDVQRIINKIFAYNWGIMILDEVHVVPAQ 330
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
+K + + PLW+ +G I LE F + A +FLIAIAEP+ RPE+IHE P +F
Sbjct: 1 MKENSEDCPLWINYDGLIILEMFRENSQQATNFLIAIAEPISRPENIHEYQITPYSLF 58
>sp|Q6E6J3|RAD25_ANTLO Probable DNA repair helicase RAD25 homolog OS=Antonospora locustae
GN=RAD25 PE=3 SV=1
Length = 687
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/281 (59%), Positives = 214/281 (76%), Gaps = 1/281 (0%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V++ V HCKLGLTATL+REDDKI DLNFLIGPKLYEA+W +L +
Sbjct: 353 LDEVHVVPAAMFRKVVSAVSHHCKLGLTATLVREDDKIEDLNFLIGPKLYEADWQDLSMQ 412
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IARV+C EVWC M+ EFYREYL +R +L +MNP K++ ++LI HE G+K I
Sbjct: 413 GHIARVECVEVWCDMTAEFYREYLGQDPRRRRVLSIMNPAKFQTCEFLIRKHEALGEKII 472
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV AL+ YA+K+ KP+IYGPT Q+ER++IL+ F+ NP +NT+F+SKV DTS DLPE
Sbjct: 473 VFSDNVLALRTYALKLGKPFIYGPTGQTERMRILRQFQTNPAINTLFLSKVGDTSIDLPE 532
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A+ LIQISSH GSRRQEAQRLGRILRAK+ + +FYTLVS+DT EM YSRKRQ+F
Sbjct: 533 ASCLIQISSHFGSRRQEAQRLGRILRAKRRN-DPGFRVYFYTLVSKDTEEMYYSRKRQQF 591
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAA 495
L++QGY+++ +T L G + + + EQ +LL VL A
Sbjct: 592 LVDQGYTFRTVTALEGFRDTDVRVFRGKAEQRELLATVLLA 632
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC SGVSVEQW+ Q +ST + RFTSE K+
Sbjct: 256 AGKTLVGITAMCTIKKPCIVLCTSGVSVEQWRQQVLAFSTVSADAVSRFTSERKEMFEAD 315
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD--GVPVAAKKNV 146
GIL+TTY+M++ + +RS EA + M+WL+ EWG+M+LD+ VP A + V
Sbjct: 316 AGILITTYTMLAFSGRRSAEAQRVMEWLRGTEWGLMILDEVHVVPAAMFRKV 367
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKM 225
++ +K +H PL V+ NG I LE+F+ + A DFLIAIAEPV RP H+HE P +
Sbjct: 34 EIRMKQEHTECPLLVSHNGIIILETFTANAKQATDFLIAIAEPVSRPAHVHEYRITPYSL 93
Query: 226 F 226
+
Sbjct: 94 Y 94
>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis
elegans GN=T26G10.1 PE=3 SV=1
Length = 489
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 309 YVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVK-----MNKPYIYGPTSQSE 363
Y+ PNKY+ T + +E G+ IVF AV M ++G SQ +
Sbjct: 262 YIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEK 321
Query: 364 RIQILQNFKLNPKVNTIFV-SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422
R+ L FK K I V + VA D+P +++I S + R+GR RA
Sbjct: 322 RLGSLNKFK--SKAREILVCTDVAARGLDIPHVDMVINYDMPSQS-KDYVHRVGRTARAG 378
Query: 423 KGAIA 427
+ IA
Sbjct: 379 RSGIA 383
>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0022 PE=4 SV=1
Length = 559
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
I E H PA + + +L + +LGL+AT +RED K ++ L+G + ++ EL +
Sbjct: 299 IDEAHHTPANIVKSLLLDSPNSIRLGLSATPIREDGKELEIMGLLGKISFTIDYTELVRN 358
Query: 275 GFIARVQCAEVWCP----------------MSPEFYREYLVC---------KTSKRLLLY 309
++ ++ + P PE + +Y T+K+++
Sbjct: 359 RYLVPIEYIR-YIPEIPKKLKLKIQDLDDNKDPENFAKYYSSLLRSFEHSPNTNKQIISK 417
Query: 310 VMNPNKYRATQYL--IAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQI 367
+ N+Y + IA ++ + I+ + + A ++ T ER++
Sbjct: 418 IKQLNQYPCLVIVRRIAIAKKLAE--IMRENGIIA----------DWVSSKTKLEERMEK 465
Query: 368 LQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA----KK 423
++ K N K+ + + +AD D+P L+ + + G SR + QR+GR++R +K
Sbjct: 466 IEALK-NEKLQVLISTSLADEGLDIPNLR-LVVLLTQGKSRIKLIQRIGRVMRVSQNKRK 523
Query: 424 GAIAE 428
G I +
Sbjct: 524 GYILD 528
>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1
Length = 467
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 309 YVMNPNKYRATQYLIAYHERRGDKTIVFSDNV-----FALKHYAVKMNKPYIYGPTSQSE 363
Y+ P K++ + +E G TI+F+ V A A+ ++G SQS
Sbjct: 267 YLFIPQKHKDLYLVYLLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSA 326
Query: 364 RIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 423
R+ L F+ + N + + VA D+P +V++ G S R+GR RA K
Sbjct: 327 RLGALGKFRARSR-NILVATDVAARGLDIPSVDVVLNFDLPGDS-PSYVHRVGRTARAGK 384
Query: 424 GAIAEEYNA 432
+A + A
Sbjct: 385 SGLAISFVA 393
>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=rrp3 PE=3 SV=2
Length = 445
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 245 LLREDDKIADLNFLIGPKLYEANWLELQKRGFI------ARVQCAEVWCPMSPEFYREYL 298
+L E D++ DL+F GP L + L +++ ++ ++V+ + P
Sbjct: 176 VLDEADRLLDLDF--GPILDKLLRLLPKRKTYLFSATMSSKVESLQRASLSDPVRVSVST 233
Query: 299 VCKTSKRLLL-YVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNK---PY 354
+T+ +LL Y+ P+K++ + +ER G I+F+ V + ++ + P
Sbjct: 234 KNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGIIFTRTVHETQRLSIMLRNLGFPA 293
Query: 355 --IYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEA 412
I+G SQS R+ L F+ + N + + VA D+P + ++ S +
Sbjct: 294 IPIHGQLSQSARLASLNKFRARSR-NLLIATDVAARGLDIPAVDYVLNYDLPQDS-KTYI 351
Query: 413 QRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
R+GR RA K IA ++ V+Q +E+
Sbjct: 352 HRVGRTARAGKSGIA-------FSFVTQYEVEL 377
>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=RRP3 PE=3 SV=2
Length = 539
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 30/217 (13%)
Query: 245 LLREDDKIADLNFLIGPKLYEANWLELQKRGF----------IARVQCAEVWCPMSPEFY 294
++ E D++ D++F GP L + + KR I ++Q A + P+
Sbjct: 271 VMDEADRLLDMDF--GPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVS 328
Query: 295 REYLVCKTSKRLLLYVMNPNK-YRATQYLIAYHERRGDKTIVFSDNV-----FALKHYAV 348
+Y +T+ L+ +M N Y+ T + +E G IVF+ V AL +
Sbjct: 329 SKY---QTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARIL 385
Query: 349 KMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSR 408
N ++G SQS+R+ L FK N + N + + VA D+P +V+I S
Sbjct: 386 GFNAVPLHGQLSQSQRLGSLNKFKSN-QANILVATDVAARGLDIPSVDVVINYDIPTDS- 443
Query: 409 RQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
+ R+GR RA + + +L++Q +EM
Sbjct: 444 KAYIHRVGRTARAGRSGKS-------ISLITQYDLEM 473
>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=RRP3 PE=3 SV=1
Length = 493
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 245 LLREDDKIADLNFLIGPKLYEA-NWLELQKRGFI------ARVQCAEVWCPMSP-EFYRE 296
++ E D++ D++F GP L + +L ++R F+ ++V+ + C P +
Sbjct: 213 VMDEADRLLDMDF--GPILDKILKFLPRERRTFLFSATMSSKVESLQRACLRDPLKVSIS 270
Query: 297 YLVCKTSKRLLL-YVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAV-----KM 350
+T L+ YV P+ ++ T + +E G I+F+ V + A+ M
Sbjct: 271 SSKYQTVSTLVQNYVFIPHTHKDTYLIYLCNEFAGQTIIIFTRTVIETQRIAILLRTLGM 330
Query: 351 NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 410
++G SQS R+ L F+ + + + + VA D+P + ++ + G S+
Sbjct: 331 GAIPLHGGLSQSARLGALNKFRAGSR-DILVATDVAARGLDIPNVDCVLNLDLPGDSKTY 389
Query: 411 EAQRLGRILRAKK 423
R+GR RA +
Sbjct: 390 -VHRVGRTARAGR 401
>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=RRP3 PE=3 SV=1
Length = 485
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 309 YVMNPNKYRATQYLIAYHERRGDKTIVFSDNV-----FALKHYAVKMNKPYIYGPTSQSE 363
Y+ P+KY+ + +E G IVF+ V A+ A+ ++G SQS
Sbjct: 278 YLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSS 337
Query: 364 RIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 423
R+ L F+ + + + + VA D+P +V++ S+ R+GR RA K
Sbjct: 338 RLGALSKFRSRSR-DILVATDVAARGLDIPSVDVVLNFDLPSDSKTY-IHRVGRTARAGK 395
Query: 424 GAIAEEYNAFFYTLVSQDTMEM 445
A +++V+Q +E+
Sbjct: 396 SGHA-------FSIVTQYDIEV 410
>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium
discoideum GN=ddx49 PE=3 SV=1
Length = 508
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 288 PMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYA 347
P E +Y T K+ +Y+ P K Y++ HE G IVF +N +A++
Sbjct: 205 PFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHE--GSSAIVFVNNCYAVEAVK 262
Query: 348 VKMNKPYI-----YGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQIS 402
+NK I + Q R+ L+ FK + KV + + VA D+P+ ++I
Sbjct: 263 GMLNKLDIPSVSLHSFLDQKSRLAALKTFK-SGKVKVLVATDVASRGLDIPDVQIVINY- 320
Query: 403 SHGGSRRQEAQRLGRILR 420
S + R+GR R
Sbjct: 321 KLSNSSKDYIHRVGRTAR 338
>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium
discoideum GN=ddx47 PE=3 SV=1
Length = 546
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A++Q A + P+ + +Y T + L+V P KY+ +E G+ TI+F
Sbjct: 307 VAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFV--PFKYKDCYLAYILNELAGNLTIIF 364
Query: 337 SDNVFALKHYAVKM-NKPY----IYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFD 391
+ + A+ + N + I G Q +R+ L FK K + + + VA D
Sbjct: 365 TSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTK-SILVATDVAARGLD 423
Query: 392 LPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449
+P +++I S ++ R+GR RA A T+V+Q +EM Y R
Sbjct: 424 IPSVDLVINYDVPTNS-KEYVHRVGRTARAGNSGRA-------ITIVTQYDVEM-YQR 472
>sp|Q04692|SMRCD_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Mus
musculus GN=Smarcad1 PE=1 SV=2
Length = 1021
Score = 39.7 bits (91), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 294 YREYLVCKTSKRLLLY------VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFA----- 342
+ +++CK + + Y +++ K+RA +++ +++GD+ ++FS
Sbjct: 823 FELHVLCKQYQHINSYQLDMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILE 882
Query: 343 --LKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLI 399
LKH+ + + + G T SERI ++ F + + +S K +L ANV+I
Sbjct: 883 VLLKHHQHRYLR--LDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI 940
Query: 400 --QISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
I + + +Q R R+ + K+ L+SQ T+E S + Q+ L
Sbjct: 941 LHDIDCNPYNDKQAEDRCHRVGQTKE--------VLVIKLISQGTIEESMLKINQQKL 990
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rrp-3 PE=3 SV=1
Length = 515
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 22/195 (11%)
Query: 245 LLREDDKIADLNFLIGPKLYEA-NWLELQKRGF---------IARVQCAEVWCPMSPEFY 294
++ E D++ D++F GP L + +L ++R F + +Q A + P+
Sbjct: 238 VMDEADRLLDMDF--GPILEKILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVSVS 295
Query: 295 -REYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAV----- 348
+Y T K YV P+ ++ T + +E G I+F+ V + A+
Sbjct: 296 SNKYATVSTLKSN--YVFIPHMHKDTYLVYLCNEFAGQTIIIFTRTVLETQRIAILLRTL 353
Query: 349 KMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSR 408
M ++G SQS R+ L F+ + + + VA D+P + +I S+
Sbjct: 354 GMGAIPLHGGLSQSARLGALNKFRAGSR-EILVATDVAARGLDIPNVDCVINHDLPQDSK 412
Query: 409 RQEAQRLGRILRAKK 423
R+GR RA K
Sbjct: 413 TY-VHRVGRTARAGK 426
>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RRP3 PE=3 SV=2
Length = 546
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 309 YVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNK------PYIYGPTSQS 362
Y++ P+KY+ + ++ G TI+F+ V + AV + P ++G SQS
Sbjct: 335 YMLIPHKYKDLYLIHLLNDNIGHATILFTRTVNETQRLAVLLRTLGFQALP-LHGQLSQS 393
Query: 363 ERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422
R+ L FK + + + + VA D+P ++++ S R+GR RA
Sbjct: 394 NRLGALNKFKAKAR-DILVATDVAARGLDIPSVDLVVNFDLPHDSETY-VHRVGRTARAG 451
Query: 423 KGAIAEEY 430
K A +
Sbjct: 452 KSGKAVSF 459
>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rrp3
PE=3 SV=1
Length = 472
Score = 39.3 bits (90), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 245 LLREDDKIADLNFLIGPKLYEA-NWLELQKRGF---------IARVQCAEVWCPM----S 290
++ E D++ D++F GP L + L ++R F + +Q A + P+ S
Sbjct: 200 VMDEADRLLDMDF--GPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVSVS 257
Query: 291 PEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNV-------FAL 343
Y+ S L Y+ P+K++ + +E G TI+F+ V F L
Sbjct: 258 SNKYQ-----TVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLL 312
Query: 344 KHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISS 403
+ ++ ++G SQS R+ L F+ + + + + VA D+P +V++
Sbjct: 313 R--SLGFGAIPLHGQLSQSARLGALGKFRSRSR-DILVATDVAARGLDIPSVDVVLNFDL 369
Query: 404 HGGSRRQEAQRLGRILRAKKGAIAEEY 430
S+ R+GR RA K +A +
Sbjct: 370 PTDSKTY-VHRVGRTARAGKSGVAISF 395
>sp|D3Z9Z9|SMRCD_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Rattus
norvegicus GN=Smarcad1 PE=3 SV=1
Length = 1024
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 294 YREYLVCKTSKRLLLY------VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYA 347
+ +++CK + + Y +++ K+R +++ +++GD+ ++FS L
Sbjct: 826 FELHVLCKQYQHINSYQLDMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILE 885
Query: 348 VKMNKPY-----IYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLI-- 399
V + + G T SERI ++ F + + +S K +L ANV+I
Sbjct: 886 VLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILH 945
Query: 400 QISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
I + + +Q R R+ + K+ L+SQ T+E S + Q+ L
Sbjct: 946 DIDCNPYNDKQAEDRCHRVGQTKE--------VLVIKLISQGTIEESMLKINQQKL 993
>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rrp3 PE=3 SV=1
Length = 465
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 17/195 (8%)
Query: 246 LREDDKIADLNF--------LIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREY 297
+ E D++ D++F I P+ + +Q A + P+ +Y
Sbjct: 195 IDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKY 254
Query: 298 LVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNV-----FALKHYAVKMNK 352
T + Y+ P+K++ + +E G I+F+ V A A+
Sbjct: 255 QTVSTLQSS--YICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGA 312
Query: 353 PYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEA 412
++G SQS R+ L F+ + + + + VA D+P +V+ S+
Sbjct: 313 IPLHGQLSQSARLGALGKFRSRSR-DILVATDVAARGLDIPSVDVVFNFDLPMDSKTY-I 370
Query: 413 QRLGRILRAKKGAIA 427
R+GR RA K +A
Sbjct: 371 HRVGRTARAGKSGVA 385
>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP3 PE=3 SV=2
Length = 535
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 355 IYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQR 414
I+G SQ +R Q LQ+FK + + N + + VA D+P +I + + + R
Sbjct: 404 IHGDLSQQQRTQALQSFK-SGECNLLLATDVAARGLDIPNVKYVINL-TFPLTIEDYVHR 461
Query: 415 LGRILRAKKGAIAEEY 430
LGR RA + IA +
Sbjct: 462 LGRTGRAGQTGIAHTF 477
>sp|Q9H4L7|SMRCD_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Homo
sapiens GN=SMARCAD1 PE=1 SV=2
Length = 1026
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 310 VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFA-------LKHYAVKMNKPYIYGPTSQS 362
+++ K+R +++ +++GD+ ++FS LKH+ + + + G T S
Sbjct: 850 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR--LDGKTQIS 907
Query: 363 ERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLI--QISSHGGSRRQEAQRLGRIL 419
ERI ++ F + + +S K +L ANV+I I + + +Q R R+
Sbjct: 908 ERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG 967
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ K+ L+SQ T+E S + Q+ L
Sbjct: 968 QTKE--------VLVIKLISQGTIEESMLKINQQKL 995
>sp|Q59N29|SPB41_CANAL ATP-dependent rRNA helicase SPB41 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB41 PE=3 SV=1
Length = 631
Score = 35.8 bits (81), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 25/153 (16%)
Query: 307 LLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPY------------ 354
L Y+M + + T L + + K IV+ ++KH+ NK Y
Sbjct: 255 LSYMMINPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFF 314
Query: 355 -IYGPTSQSERIQILQNF---KLNPKVNTIFVSKVADTSFDLPEANVLIQISS------- 403
++G + R++ L NF +N + + + VA D+P+ +++IQI
Sbjct: 315 SLHGQLNTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPTDPNVF 374
Query: 404 -HGGSRRQEAQRLGR-ILRAKKGAIAEEYNAFF 434
H R A ++GR I+ E+Y F
Sbjct: 375 LHRCGRTGRANKVGRAIVMLNDNCQEEDYIGFM 407
>sp|Q59NP8|SPB42_CANAL ATP-dependent rRNA helicase SPB42 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB42 PE=3 SV=1
Length = 631
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 25/153 (16%)
Query: 307 LLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPY------------ 354
L Y+M + + T L + + K IV+ ++KH+ NK Y
Sbjct: 255 LSYMMINPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFF 314
Query: 355 -IYGPTSQSERIQILQNF---KLNPKVNTIFVSKVADTSFDLPEANVLIQISS------- 403
++G + R++ L NF +N + + + VA D+P+ +++IQI
Sbjct: 315 SLHGQLNTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPTDPNVF 374
Query: 404 -HGGSRRQEAQRLGR-ILRAKKGAIAEEYNAFF 434
H R A ++GR I+ E+Y F
Sbjct: 375 LHRCGRTGRANKVGRAIVMLNDNCQEEDYIGFM 407
>sp|E1B7X9|SMRCD_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Bos
taurus GN=SMARCAD1 PE=3 SV=2
Length = 1028
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 310 VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFA-------LKHYAVKMNKPYIYGPTSQS 362
+++ K+R +++ +++GD+ ++FS LKH+ + + + G T S
Sbjct: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR--LDGKTQIS 909
Query: 363 ERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLI--QISSHGGSRRQEAQRLGRIL 419
ERI ++ F + + +S K +L ANV+I I + + +Q R R+
Sbjct: 910 ERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG 969
Query: 420 RAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455
+ K+ L+ Q T+E S + Q+ L
Sbjct: 970 QTKE--------VLVIKLIGQGTIEESMLKINQQKL 997
>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP3 PE=3 SV=1
Length = 504
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 325 YHE--RRGDKTIVFSDNVFALKHYAVKMNKPY-------IYGPTSQSERIQILQNFKLNP 375
YH + DK ++F+ ++ + V+ N Y I+G SQ +R Q L FK
Sbjct: 333 YHSGPTKNDKVLIFA--LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAG- 389
Query: 376 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA 421
K N + + VA D+P +I + + + R+GR RA
Sbjct: 390 KCNLLLATDVAARGLDIPNVKTVINL-TFPLTVEDYVHRIGRTGRA 434
>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RRP3 PE=3 SV=1
Length = 484
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 24/214 (11%)
Query: 245 LLREDDKIADLNF--------LIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYRE 296
++ E D++ DL+F + PK +A++Q A + P+ E +
Sbjct: 186 VMDEADRLLDLDFGPIIDKILKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRVEVSSK 245
Query: 297 YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNK---P 353
Y T + L + NK YL +E ++F+ V + ++ + + P
Sbjct: 246 YSTVSTLLQHYLLLPLKNKDAYLLYL--ANELSSSSMMIFTRTVADSQRLSIILRRLGFP 303
Query: 354 YI--YGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQE 411
I +G +QS R+ L FK + + + + VA D+P +++I S +
Sbjct: 304 AIPLHGQMTQSLRLASLNKFKSGGR-SILVATDVASRGLDIPLVDLVINYDMPTNS-KDY 361
Query: 412 AQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
R+GR RA + + TLV+Q +E+
Sbjct: 362 VHRVGRTARAGRSGKS-------ITLVTQYDVEI 388
>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RRP3 PE=3 SV=1
Length = 484
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 24/214 (11%)
Query: 245 LLREDDKIADLNF--------LIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYRE 296
++ E D++ DL+F + PK +A++Q A + P+ E +
Sbjct: 186 VMDEADRLLDLDFGPIIDKILKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRVEVSSK 245
Query: 297 YLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNK---P 353
Y T + L + NK YL +E ++F+ V + ++ + + P
Sbjct: 246 YSTVSTLLQHYLLLPLKNKDAYLLYL--ANELSSSSMMIFTRTVADSQRLSIILRRLGFP 303
Query: 354 YI--YGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQE 411
I +G +QS R+ L FK + + + + VA D+P +++I S +
Sbjct: 304 AIPLHGQMTQSLRLASLNKFKSGGR-SILVATDVASRGLDIPLVDLVINYDMPTNS-KDY 361
Query: 412 AQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445
R+GR RA + + TLV+Q +E+
Sbjct: 362 VHRVGRTARAGRSGKS-------ITLVTQYDVEI 388
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,511,509
Number of Sequences: 539616
Number of extensions: 8898326
Number of successful extensions: 114699
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 98552
Number of HSP's gapped (non-prelim): 9471
length of query: 552
length of database: 191,569,459
effective HSP length: 123
effective length of query: 429
effective length of database: 125,196,691
effective search space: 53709380439
effective search space used: 53709380439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)