Query psy11640
Match_columns 552
No_of_seqs 363 out of 2020
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 15:13:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1123|consensus 100.0 2E-106 4E-111 810.9 32.5 461 6-552 302-769 (776)
2 TIGR00603 rad25 DNA repair hel 100.0 1.4E-85 3.1E-90 717.1 44.7 461 5-549 254-732 (732)
3 COG1061 SSL2 DNA or RNA helica 100.0 4.1E-49 9E-54 419.5 33.0 363 6-466 36-419 (442)
4 PHA02558 uvsW UvsW helicase; P 100.0 5.7E-42 1.2E-46 371.5 33.8 340 27-466 129-496 (501)
5 KOG0385|consensus 100.0 2.5E-41 5.5E-46 355.7 26.1 327 30-455 189-613 (971)
6 PLN03142 Probable chromatin-re 100.0 5.3E-40 1.1E-44 371.9 30.8 326 28-454 189-612 (1033)
7 COG1111 MPH1 ERCC4-like helica 100.0 2.5E-39 5.5E-44 329.9 27.9 330 26-449 28-489 (542)
8 KOG0387|consensus 100.0 5.3E-39 1.2E-43 339.9 26.7 324 30-451 227-668 (923)
9 KOG0389|consensus 100.0 5E-38 1.1E-42 332.1 26.3 330 31-456 422-903 (941)
10 KOG0392|consensus 100.0 5.2E-37 1.1E-41 335.5 25.5 325 27-450 994-1463(1549)
11 KOG0384|consensus 100.0 1.2E-36 2.7E-41 334.0 23.0 360 28-490 390-857 (1373)
12 PRK04914 ATP-dependent helicas 100.0 2.4E-34 5.3E-39 325.0 31.0 326 27-449 169-613 (956)
13 KOG0390|consensus 100.0 4.6E-34 9.9E-39 310.3 31.7 340 28-468 264-731 (776)
14 KOG0386|consensus 100.0 8.3E-36 1.8E-40 322.0 15.3 358 35-501 421-889 (1157)
15 PRK13766 Hef nuclease; Provisi 100.0 3.5E-33 7.7E-38 319.3 29.6 326 29-448 31-486 (773)
16 KOG0388|consensus 100.0 5.9E-32 1.3E-36 281.9 21.8 130 314-450 1028-1163(1185)
17 KOG0331|consensus 100.0 1.4E-31 3E-36 280.2 23.4 293 28-440 129-447 (519)
18 PTZ00110 helicase; Provisional 100.0 1.3E-31 2.8E-36 292.8 24.3 305 28-457 168-498 (545)
19 PRK11448 hsdR type I restricti 100.0 3.9E-31 8.5E-36 305.2 25.7 354 6-440 413-817 (1123)
20 PRK04837 ATP-dependent RNA hel 100.0 1.1E-31 2.4E-36 286.4 18.7 288 28-441 46-362 (423)
21 PRK11192 ATP-dependent RNA hel 100.0 5.2E-31 1.1E-35 282.2 22.4 313 29-467 40-375 (434)
22 PRK10590 ATP-dependent RNA hel 100.0 4.8E-31 1.1E-35 283.6 21.8 288 28-441 39-352 (456)
23 KOG1000|consensus 100.0 2.8E-30 6E-35 261.1 25.7 413 26-504 213-664 (689)
24 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-30 2.6E-35 284.2 24.4 290 28-441 159-475 (518)
25 KOG0391|consensus 100.0 1.3E-30 2.8E-35 282.7 23.6 131 315-451 1261-1397(1958)
26 PRK04537 ATP-dependent RNA hel 100.0 5E-31 1.1E-35 289.3 20.6 289 28-440 47-363 (572)
27 PRK11776 ATP-dependent RNA hel 100.0 1.7E-30 3.6E-35 280.2 22.2 287 28-441 42-349 (460)
28 PRK01297 ATP-dependent RNA hel 100.0 3.4E-30 7.5E-35 278.7 24.4 289 28-441 125-442 (475)
29 TIGR00614 recQ_fam ATP-depende 100.0 2.5E-29 5.4E-34 271.3 27.2 294 7-425 12-324 (470)
30 KOG0354|consensus 100.0 2.1E-29 4.5E-34 271.3 25.1 109 314-425 395-521 (746)
31 KOG0330|consensus 100.0 6.5E-30 1.4E-34 252.3 18.8 317 6-445 72-411 (476)
32 PRK10917 ATP-dependent DNA hel 100.0 4E-29 8.7E-34 279.8 27.7 332 27-495 282-652 (681)
33 PTZ00424 helicase 45; Provisio 100.0 8E-30 1.7E-34 270.4 19.1 291 28-443 66-376 (401)
34 TIGR00580 mfd transcription-re 100.0 7.3E-29 1.6E-33 281.8 27.1 303 28-466 473-798 (926)
35 TIGR00643 recG ATP-dependent D 100.0 1.4E-28 3.1E-33 273.5 28.0 329 29-494 258-628 (630)
36 KOG1015|consensus 100.0 3.1E-29 6.7E-34 268.0 21.4 144 315-467 1127-1300(1567)
37 COG0513 SrmB Superfamily II DN 100.0 2.3E-29 5.1E-34 272.7 20.9 291 28-440 67-379 (513)
38 PRK11634 ATP-dependent RNA hel 100.0 5.6E-29 1.2E-33 274.8 21.3 280 28-424 44-342 (629)
39 TIGR03817 DECH_helic helicase/ 100.0 3E-28 6.6E-33 273.9 27.5 322 28-455 52-400 (742)
40 KOG1002|consensus 100.0 1.4E-28 3E-33 248.5 21.3 132 315-452 621-760 (791)
41 KOG0345|consensus 100.0 6E-29 1.3E-33 250.7 18.5 281 29-425 44-355 (567)
42 PRK10689 transcription-repair 100.0 6.4E-28 1.4E-32 279.6 29.0 331 26-493 620-983 (1147)
43 KOG4439|consensus 100.0 4.3E-28 9.3E-33 254.0 23.2 135 315-455 730-872 (901)
44 PRK11057 ATP-dependent DNA hel 100.0 1.8E-27 3.9E-32 263.7 25.3 275 28-424 41-333 (607)
45 PRK02362 ski2-like helicase; P 100.0 4.7E-27 1E-31 266.4 23.3 303 27-440 39-396 (737)
46 KOG0350|consensus 100.0 1.3E-27 2.8E-32 242.5 16.5 316 32-442 188-541 (620)
47 PRK13767 ATP-dependent helicas 100.0 9.1E-27 2E-31 266.9 25.5 296 27-423 47-386 (876)
48 PLN03137 ATP-dependent DNA hel 100.0 5.7E-27 1.2E-31 263.2 23.1 282 28-425 476-778 (1195)
49 TIGR01389 recQ ATP-dependent D 100.0 1.3E-26 2.7E-31 257.2 25.8 274 29-424 30-321 (591)
50 KOG0333|consensus 99.9 5.1E-27 1.1E-31 239.3 19.4 319 28-448 283-631 (673)
51 KOG0340|consensus 99.9 2.2E-26 4.7E-31 225.1 19.3 300 28-445 45-365 (442)
52 COG4096 HsdR Type I site-speci 99.9 4.4E-27 9.5E-32 252.8 15.5 339 8-440 167-547 (875)
53 KOG0328|consensus 99.9 1.7E-26 3.6E-31 219.4 15.8 292 29-444 66-376 (400)
54 COG1200 RecG RecG-like helicas 99.9 1.3E-25 2.9E-30 238.8 24.0 328 29-495 285-654 (677)
55 KOG0338|consensus 99.9 5.5E-26 1.2E-30 230.9 19.1 287 31-441 222-533 (691)
56 TIGR00348 hsdR type I site-spe 99.9 2.7E-25 5.8E-30 248.0 25.6 318 27-440 263-650 (667)
57 KOG0342|consensus 99.9 8.5E-26 1.9E-30 229.5 19.1 283 29-424 121-427 (543)
58 KOG0336|consensus 99.9 3.6E-26 7.7E-31 226.6 14.7 291 29-441 259-572 (629)
59 PRK00254 ski2-like helicase; P 99.9 1.7E-25 3.7E-30 253.1 22.4 286 27-425 39-377 (720)
60 TIGR01587 cas3_core CRISPR-ass 99.9 1.2E-24 2.6E-29 227.4 25.4 121 314-441 207-338 (358)
61 KOG0343|consensus 99.9 2.2E-25 4.7E-30 228.4 19.1 276 30-425 109-413 (758)
62 PRK01172 ski2-like helicase; P 99.9 5E-25 1.1E-29 248.1 22.4 282 28-425 38-367 (674)
63 KOG0339|consensus 99.9 1.4E-24 3E-29 220.5 18.6 292 29-444 262-578 (731)
64 PRK09751 putative ATP-dependen 99.9 1.5E-24 3.3E-29 253.1 21.4 296 32-422 1-372 (1490)
65 KOG0335|consensus 99.9 4E-24 8.7E-29 220.6 21.0 281 31-425 115-435 (482)
66 COG1197 Mfd Transcription-repa 99.9 1.7E-23 3.7E-28 234.0 26.1 297 30-467 618-942 (1139)
67 KOG0348|consensus 99.9 1.8E-24 4E-29 221.0 16.5 317 28-425 175-545 (708)
68 COG1204 Superfamily II helicas 99.9 8E-24 1.7E-28 236.2 22.8 291 27-425 47-397 (766)
69 KOG0341|consensus 99.9 2E-24 4.4E-29 212.9 14.0 291 28-446 208-533 (610)
70 KOG0326|consensus 99.9 3.8E-24 8.2E-29 206.5 15.0 285 33-442 128-430 (459)
71 PHA02653 RNA helicase NPH-II; 99.9 7.1E-23 1.5E-27 225.8 26.2 291 26-443 178-516 (675)
72 TIGR03714 secA2 accessory Sec 99.9 2.5E-23 5.5E-28 228.6 21.7 369 30-424 86-527 (762)
73 COG0553 HepA Superfamily II DN 99.9 2.9E-23 6.3E-28 241.0 23.5 332 27-453 358-834 (866)
74 COG1201 Lhr Lhr-like helicases 99.9 7.6E-23 1.6E-27 225.8 20.9 292 26-423 36-350 (814)
75 KOG0347|consensus 99.9 8.1E-24 1.8E-28 216.9 12.0 298 30-424 222-560 (731)
76 PRK09200 preprotein translocas 99.9 2E-22 4.2E-27 223.6 23.0 368 29-424 93-531 (790)
77 TIGR03158 cas3_cyano CRISPR-as 99.9 1.2E-22 2.6E-27 211.4 20.2 279 30-419 17-357 (357)
78 COG1202 Superfamily II helicas 99.9 2.2E-22 4.7E-27 207.4 21.4 290 29-441 234-553 (830)
79 COG0514 RecQ Superfamily II DN 99.9 4.1E-22 9E-27 212.8 24.3 289 28-440 33-336 (590)
80 KOG0332|consensus 99.9 4.7E-22 1E-26 195.8 21.7 304 29-455 131-456 (477)
81 PRK11664 ATP-dependent RNA hel 99.9 3.7E-22 8E-27 225.4 23.9 287 28-441 21-339 (812)
82 PRK12898 secA preprotein trans 99.9 8.2E-22 1.8E-26 214.4 23.6 109 311-423 454-575 (656)
83 TIGR00963 secA preprotein tran 99.9 5.8E-22 1.3E-26 216.6 22.1 368 30-425 72-508 (745)
84 TIGR02621 cas3_GSU0051 CRISPR- 99.9 4.3E-22 9.3E-27 221.0 21.2 103 328-437 270-390 (844)
85 KOG0344|consensus 99.9 9.8E-23 2.1E-27 211.8 14.3 287 27-426 173-487 (593)
86 KOG1016|consensus 99.9 4.3E-22 9.4E-27 209.9 15.5 150 328-492 717-891 (1387)
87 TIGR01970 DEAH_box_HrpB ATP-de 99.9 5.8E-21 1.3E-25 215.3 25.3 287 28-441 18-336 (819)
88 KOG0337|consensus 99.9 4.4E-22 9.5E-27 198.8 13.3 287 31-441 62-368 (529)
89 COG4098 comFA Superfamily II D 99.9 2.1E-20 4.5E-25 182.7 23.5 306 26-461 115-436 (441)
90 TIGR00595 priA primosomal prot 99.9 1.1E-20 2.4E-25 204.1 23.2 91 31-139 1-104 (505)
91 KOG4284|consensus 99.9 4.9E-22 1.1E-26 206.8 11.8 286 30-424 65-369 (980)
92 COG4889 Predicted helicase [Ge 99.9 2.5E-21 5.3E-26 206.9 15.8 326 27-440 180-587 (1518)
93 PRK09401 reverse gyrase; Revie 99.9 8E-21 1.7E-25 221.2 21.5 295 28-422 96-432 (1176)
94 KOG0334|consensus 99.9 8.9E-21 1.9E-25 208.7 17.5 292 28-440 403-719 (997)
95 KOG0346|consensus 99.8 7.8E-21 1.7E-25 190.7 13.8 289 31-442 60-411 (569)
96 PRK05580 primosome assembly pr 99.8 2.3E-19 4.9E-24 200.7 25.9 94 28-139 163-269 (679)
97 KOG1001|consensus 99.8 1.4E-20 3.1E-25 206.3 13.5 116 332-453 541-662 (674)
98 KOG0952|consensus 99.8 1.1E-19 2.4E-24 198.6 20.0 302 26-426 125-481 (1230)
99 COG1205 Distinct helicase fami 99.8 1.5E-19 3.3E-24 204.7 21.8 320 28-455 86-436 (851)
100 KOG0327|consensus 99.8 9.3E-20 2E-24 181.2 14.9 287 30-442 66-371 (397)
101 PRK13104 secA preprotein trans 99.8 1.2E-18 2.6E-23 193.3 23.6 374 29-425 97-578 (896)
102 PRK12906 secA preprotein trans 99.8 9.6E-19 2.1E-23 193.1 19.8 110 312-425 422-544 (796)
103 TIGR01054 rgy reverse gyrase. 99.8 4.6E-18 1E-22 198.5 21.5 80 318-406 317-409 (1171)
104 PRK11131 ATP-dependent RNA hel 99.8 8E-18 1.7E-22 194.0 21.4 103 329-442 285-412 (1294)
105 PRK14701 reverse gyrase; Provi 99.8 5.8E-18 1.3E-22 201.5 19.9 302 28-423 95-445 (1638)
106 PRK09694 helicase Cas3; Provis 99.8 9.3E-18 2E-22 189.7 20.6 102 317-423 548-664 (878)
107 PRK12904 preprotein translocas 99.8 2.8E-17 6.1E-22 182.3 22.5 369 29-425 96-564 (830)
108 TIGR00631 uvrb excinuclease AB 99.8 3.3E-17 7.1E-22 181.5 20.6 119 315-442 427-554 (655)
109 KOG0951|consensus 99.8 1.9E-17 4.1E-22 183.4 18.3 300 25-426 323-692 (1674)
110 COG0556 UvrB Helicase subunit 99.8 8.7E-17 1.9E-21 165.7 21.6 113 328-447 444-565 (663)
111 TIGR01967 DEAH_box_HrpA ATP-de 99.8 5.5E-17 1.2E-21 187.8 22.4 103 329-442 278-405 (1283)
112 PRK13107 preprotein translocas 99.7 6.5E-16 1.4E-20 171.3 21.9 110 312-425 431-582 (908)
113 KOG0352|consensus 99.7 1.2E-16 2.7E-21 160.0 14.5 99 331-436 256-359 (641)
114 KOG0351|consensus 99.7 6.8E-17 1.5E-21 182.3 14.3 293 28-438 280-592 (941)
115 PRK05298 excinuclease ABC subu 99.7 1.8E-14 3.8E-19 160.8 27.6 118 315-441 431-557 (652)
116 cd00079 HELICc Helicase superf 99.6 1E-15 2.2E-20 135.5 11.3 109 314-424 12-125 (131)
117 KOG0329|consensus 99.6 1.2E-15 2.7E-20 143.7 11.4 252 34-441 86-355 (387)
118 PF00176 SNF2_N: SNF2 family N 99.6 3E-15 6.5E-20 151.9 14.5 110 25-140 23-146 (299)
119 PF04851 ResIII: Type III rest 99.6 1.2E-15 2.6E-20 143.2 10.6 130 7-139 4-157 (184)
120 PRK12900 secA preprotein trans 99.6 9.8E-15 2.1E-19 162.6 19.3 110 312-425 580-702 (1025)
121 KOG0353|consensus 99.6 3.3E-14 7.1E-19 140.7 14.9 273 27-413 109-403 (695)
122 COG1203 CRISPR-associated heli 99.6 2.7E-14 5.9E-19 161.5 16.4 114 324-444 434-555 (733)
123 PF00271 Helicase_C: Helicase 99.6 3.7E-15 7.9E-20 120.2 5.6 70 351-422 9-78 (78)
124 KOG0349|consensus 99.5 4.9E-14 1.1E-18 141.6 11.7 104 329-441 504-615 (725)
125 COG4581 Superfamily II RNA hel 99.5 3.7E-13 8.1E-18 151.6 18.6 100 29-138 136-239 (1041)
126 KOG0950|consensus 99.5 1.4E-13 3E-18 150.9 14.5 301 30-425 243-600 (1008)
127 KOG0947|consensus 99.5 2.2E-13 4.8E-18 148.3 15.2 95 32-139 317-414 (1248)
128 PRK13103 secA preprotein trans 99.5 1.1E-12 2.3E-17 146.0 20.5 113 29-142 97-216 (913)
129 PRK12899 secA preprotein trans 99.5 2.3E-12 5.1E-17 143.5 22.9 108 313-425 551-672 (970)
130 COG1198 PriA Primosomal protei 99.4 4.6E-12 9.9E-17 139.9 20.3 95 27-139 217-324 (730)
131 PRK12326 preprotein translocas 99.4 7.6E-12 1.6E-16 136.3 21.3 110 29-139 93-209 (764)
132 cd00046 DEXDc DEAD-like helica 99.4 4.1E-13 8.9E-18 119.2 8.7 103 29-140 2-115 (144)
133 KOG0922|consensus 99.4 7.5E-12 1.6E-16 133.2 19.4 287 29-442 68-391 (674)
134 COG0610 Type I site-specific r 99.4 5.8E-12 1.3E-16 145.4 19.9 319 25-439 271-651 (962)
135 KOG0948|consensus 99.4 1.4E-12 3E-17 139.0 11.8 98 30-140 147-247 (1041)
136 smart00490 HELICc helicase sup 99.4 7.2E-13 1.6E-17 106.9 7.3 70 351-422 13-82 (82)
137 COG1643 HrpA HrpA-like helicas 99.3 3.1E-11 6.8E-16 135.3 18.6 289 28-444 66-390 (845)
138 KOG0383|consensus 99.3 5.5E-13 1.2E-17 145.1 3.5 78 312-389 613-696 (696)
139 TIGR01407 dinG_rel DnaQ family 99.3 5.9E-11 1.3E-15 137.1 19.6 98 326-425 670-805 (850)
140 KOG0953|consensus 99.3 1.5E-10 3.3E-15 120.4 18.0 96 328-424 356-464 (700)
141 COG1110 Reverse gyrase [DNA re 99.3 5.3E-11 1.1E-15 131.5 14.9 101 26-136 96-211 (1187)
142 KOG0949|consensus 99.3 1.3E-10 2.9E-15 127.3 17.3 81 351-436 964-1045(1330)
143 KOG0924|consensus 99.3 3E-11 6.4E-16 127.8 11.9 108 331-447 564-703 (1042)
144 PRK12903 secA preprotein trans 99.3 2.7E-10 5.9E-15 125.9 19.3 109 311-425 407-530 (925)
145 cd00268 DEADc DEAD-box helicas 99.2 1.5E-11 3.3E-16 117.8 8.4 105 27-139 36-154 (203)
146 KOG1123|consensus 99.2 4.1E-12 9E-17 130.1 3.7 91 155-246 55-149 (776)
147 PF00270 DEAD: DEAD/DEAH box h 99.2 5.8E-11 1.3E-15 110.0 10.2 104 28-139 15-130 (169)
148 KOG0926|consensus 99.1 5.2E-10 1.1E-14 120.5 13.2 77 355-440 610-703 (1172)
149 smart00487 DEXDc DEAD-like hel 99.1 2.4E-10 5.1E-15 107.6 9.2 104 28-139 25-140 (201)
150 PRK07246 bifunctional ATP-depe 99.1 3.1E-09 6.6E-14 121.6 19.8 71 328-401 645-721 (820)
151 KOG0923|consensus 99.1 5.8E-10 1.3E-14 118.0 12.3 103 328-439 471-604 (902)
152 PRK12902 secA preprotein trans 99.0 1.5E-08 3.3E-13 112.8 20.7 107 29-139 100-216 (939)
153 CHL00122 secA preprotein trans 99.0 1.9E-08 4.2E-13 112.1 20.7 107 29-139 91-207 (870)
154 KOG0920|consensus 99.0 9.3E-09 2E-13 115.4 17.5 119 314-441 395-544 (924)
155 TIGR03117 cas_csf4 CRISPR-asso 99.0 4.4E-08 9.5E-13 107.8 21.5 83 318-402 458-558 (636)
156 PRK14873 primosome assembly pr 98.9 8.9E-08 1.9E-12 106.6 22.0 87 35-138 168-267 (665)
157 PRK15483 type III restriction- 98.9 7.4E-08 1.6E-12 109.2 20.8 84 376-462 501-588 (986)
158 PRK12901 secA preprotein trans 98.9 8.7E-08 1.9E-12 107.9 20.9 110 312-425 610-732 (1112)
159 PF07652 Flavi_DEAD: Flaviviru 98.9 4.1E-09 8.8E-14 93.3 8.0 99 26-139 3-106 (148)
160 KOG0925|consensus 98.6 2.6E-07 5.7E-12 95.2 12.3 93 329-425 252-379 (699)
161 PF02399 Herpes_ori_bp: Origin 98.6 2.2E-06 4.7E-11 95.0 19.3 103 320-436 273-385 (824)
162 TIGR02562 cas3_yersinia CRISPR 98.6 2.2E-05 4.9E-10 89.4 26.3 98 334-436 760-893 (1110)
163 TIGR00603 rad25 DNA repair hel 98.6 2.9E-08 6.3E-13 110.4 3.4 74 163-236 2-75 (732)
164 TIGR00596 rad1 DNA repair prot 98.6 1.9E-06 4.1E-11 97.7 17.5 57 381-448 431-521 (814)
165 KOG0951|consensus 98.3 0.00011 2.3E-09 83.9 23.1 94 30-139 1162-1264(1674)
166 KOG4150|consensus 98.2 7.5E-06 1.6E-10 86.0 10.7 132 315-455 510-654 (1034)
167 COG3587 Restriction endonuclea 98.2 0.00011 2.3E-09 81.3 18.8 55 369-426 478-532 (985)
168 KOG0298|consensus 98.1 2.6E-06 5.7E-11 96.9 6.1 109 330-449 1221-1334(1394)
169 KOG0298|consensus 98.0 4.5E-06 9.7E-11 95.1 5.2 73 35-109 382-481 (1394)
170 COG3421 Uncharacterized protei 97.9 0.00013 2.9E-09 77.6 13.6 108 33-142 3-126 (812)
171 COG0653 SecA Preprotein transl 97.9 8.3E-05 1.8E-09 83.2 12.3 107 313-423 412-534 (822)
172 PF13872 AAA_34: P-loop contai 97.9 0.00013 2.9E-09 72.7 12.3 108 34-142 69-186 (303)
173 PF13307 Helicase_C_2: Helicas 97.6 0.00034 7.4E-09 64.9 10.0 94 328-424 7-140 (167)
174 PF13086 AAA_11: AAA domain; P 97.5 0.00015 3.3E-09 70.2 6.2 45 30-74 20-75 (236)
175 PF13871 Helicase_C_4: Helicas 97.4 0.0016 3.4E-08 64.8 11.7 87 366-460 52-147 (278)
176 PRK08074 bifunctional ATP-depe 97.4 0.00036 7.7E-09 81.8 7.5 80 322-402 744-832 (928)
177 PF06862 DUF1253: Protein of u 97.2 0.011 2.4E-07 62.7 16.2 109 329-440 299-414 (442)
178 PF13245 AAA_19: Part of AAA d 97.1 0.0007 1.5E-08 54.0 4.8 43 30-72 13-62 (76)
179 PF09848 DUF2075: Uncharacteri 97.1 0.00048 1E-08 71.9 4.8 45 30-74 4-53 (352)
180 KOG1802|consensus 97.0 0.0021 4.6E-08 69.4 8.0 47 28-74 426-476 (935)
181 COG1199 DinG Rad3-related DNA 96.9 0.005 1.1E-07 69.8 10.6 99 324-425 473-608 (654)
182 PRK08074 bifunctional ATP-depe 96.7 0.014 2.9E-07 68.7 12.6 43 28-70 277-323 (928)
183 KOG1513|consensus 96.6 0.011 2.3E-07 65.3 10.2 106 35-142 299-419 (1300)
184 KOG0952|consensus 96.6 0.0028 6E-08 71.8 5.9 105 30-140 946-1058(1230)
185 PRK11747 dinG ATP-dependent DN 96.4 0.042 9E-07 62.6 13.6 71 329-402 533-613 (697)
186 PF07517 SecA_DEAD: SecA DEAD- 96.4 0.0022 4.9E-08 63.7 3.0 105 29-137 92-206 (266)
187 PF13401 AAA_22: AAA domain; P 96.3 0.015 3.2E-07 51.0 7.8 52 26-77 3-63 (131)
188 PF02562 PhoH: PhoH-like prote 96.1 0.0023 5E-08 61.0 1.2 35 217-251 127-161 (205)
189 TIGR00604 rad3 DNA repair heli 95.9 0.069 1.5E-06 61.1 12.6 78 324-402 516-612 (705)
190 smart00489 DEXDc3 DEAD-like he 95.8 0.011 2.4E-07 59.9 4.8 49 28-76 28-85 (289)
191 smart00488 DEXDc2 DEAD-like he 95.8 0.011 2.4E-07 59.9 4.8 49 28-76 28-85 (289)
192 PRK10536 hypothetical protein; 95.7 0.01 2.2E-07 58.5 3.9 34 217-250 184-217 (262)
193 smart00382 AAA ATPases associa 95.7 0.018 3.9E-07 50.1 5.3 36 28-63 3-41 (148)
194 smart00492 HELICc3 helicase su 95.3 0.077 1.7E-06 47.7 7.9 44 359-402 31-76 (141)
195 PF13604 AAA_30: AAA domain; P 94.9 0.096 2.1E-06 49.9 7.8 44 28-71 19-65 (196)
196 smart00491 HELICc2 helicase su 94.4 0.13 2.7E-06 46.3 6.9 40 363-402 32-77 (142)
197 TIGR01447 recD exodeoxyribonuc 94.4 0.11 2.3E-06 57.9 7.6 48 27-74 160-215 (586)
198 COG1199 DinG Rad3-related DNA 94.1 0.039 8.5E-07 62.6 3.6 48 28-75 35-86 (654)
199 KOG1803|consensus 93.9 0.048 1E-06 58.9 3.6 46 27-72 201-249 (649)
200 PF01745 IPT: Isopentenyl tran 93.7 0.055 1.2E-06 51.5 3.1 29 30-58 4-32 (233)
201 PRK10875 recD exonuclease V su 93.5 0.16 3.5E-06 56.7 6.9 47 27-73 167-220 (615)
202 cd00009 AAA The AAA+ (ATPases 93.4 0.27 5.7E-06 43.0 7.0 35 27-61 19-56 (151)
203 TIGR00376 DNA helicase, putati 93.3 0.11 2.4E-06 58.5 5.2 47 28-74 174-223 (637)
204 PRK12723 flagellar biosynthesi 93.2 0.52 1.1E-05 49.7 9.8 22 28-49 175-196 (388)
205 PF00448 SRP54: SRP54-type pro 93.1 0.23 5E-06 47.3 6.4 45 31-76 5-52 (196)
206 KOG1805|consensus 92.9 0.36 7.8E-06 55.1 8.4 95 27-137 685-805 (1100)
207 COG1219 ClpX ATP-dependent pro 92.8 0.087 1.9E-06 52.9 3.0 35 27-61 97-131 (408)
208 PRK10917 ATP-dependent DNA hel 92.7 0.59 1.3E-05 53.3 10.2 88 311-400 291-389 (681)
209 PRK11747 dinG ATP-dependent DN 92.6 0.12 2.5E-06 59.0 4.3 43 27-69 49-95 (697)
210 TIGR01448 recD_rel helicase, p 92.3 0.77 1.7E-05 52.6 10.4 40 27-66 338-382 (720)
211 PRK04296 thymidine kinase; Pro 92.2 0.5 1.1E-05 44.7 7.5 30 31-60 6-38 (190)
212 PF04364 DNA_pol3_chi: DNA pol 92.2 1.5 3.2E-05 39.1 10.0 115 317-462 16-135 (137)
213 cd01120 RecA-like_NTPases RecA 92.1 0.99 2.1E-05 40.4 9.1 34 31-64 3-39 (165)
214 cd01124 KaiC KaiC is a circadi 92.1 0.27 5.8E-06 45.9 5.4 44 31-75 3-49 (187)
215 KOG0701|consensus 91.8 0.1 2.3E-06 62.9 2.7 88 332-421 294-398 (1606)
216 TIGR00604 rad3 DNA repair heli 91.7 0.19 4.2E-06 57.5 4.7 49 26-74 28-82 (705)
217 PF12340 DUF3638: Protein of u 91.7 0.61 1.3E-05 45.2 7.3 79 28-107 42-141 (229)
218 PF11496 HDA2-3: Class II hist 91.6 0.74 1.6E-05 46.7 8.3 130 310-447 92-251 (297)
219 PRK05728 DNA polymerase III su 91.2 3.2 7E-05 37.2 11.1 121 313-465 12-137 (142)
220 TIGR03877 thermo_KaiC_1 KaiC d 91.2 0.91 2E-05 44.5 8.2 45 30-75 24-71 (237)
221 PF00580 UvrD-helicase: UvrD/R 90.6 0.34 7.4E-06 49.0 4.9 49 28-76 14-69 (315)
222 PRK05580 primosome assembly pr 90.5 2.2 4.9E-05 48.6 11.7 89 311-401 171-265 (679)
223 PRK08533 flagellar accessory p 90.4 0.86 1.9E-05 44.5 7.3 46 28-74 25-73 (230)
224 TIGR00595 priA primosomal prot 90.4 1.5 3.3E-05 48.1 9.9 88 312-401 7-100 (505)
225 KOG0738|consensus 90.0 0.32 6.9E-06 50.3 3.9 47 28-75 246-292 (491)
226 TIGR02237 recomb_radB DNA repa 90.0 1.2 2.7E-05 42.4 7.9 32 31-62 16-50 (209)
227 PF02456 Adeno_IVa2: Adenoviru 89.6 0.98 2.1E-05 45.4 6.8 102 31-137 91-205 (369)
228 KOG1513|consensus 89.4 0.64 1.4E-05 51.9 5.8 56 368-425 850-913 (1300)
229 cd01125 repA Hexameric Replica 89.3 2.4 5.1E-05 41.5 9.4 19 31-49 5-23 (239)
230 KOG0745|consensus 89.1 0.31 6.8E-06 51.0 3.1 37 27-64 226-262 (564)
231 PRK14974 cell division protein 89.1 1.1 2.4E-05 46.3 7.1 46 28-73 141-192 (336)
232 COG1419 FlhF Flagellar GTP-bin 88.9 1.1 2.3E-05 47.0 6.9 81 27-135 203-288 (407)
233 PF01443 Viral_helicase1: Vira 88.9 0.61 1.3E-05 45.2 4.9 38 31-69 2-39 (234)
234 TIGR00643 recG ATP-dependent D 88.7 1.7 3.6E-05 49.2 8.9 88 311-400 265-363 (630)
235 PRK10867 signal recognition pa 88.7 1.5 3.2E-05 47.0 8.0 33 28-60 101-137 (433)
236 COG1484 DnaC DNA replication p 88.6 0.61 1.3E-05 46.3 4.7 46 28-73 106-153 (254)
237 PF00004 AAA: ATPase family as 88.4 0.56 1.2E-05 40.7 3.9 32 31-62 2-33 (132)
238 TIGR03499 FlhF flagellar biosy 88.3 1.4 3E-05 44.5 7.1 33 28-60 195-232 (282)
239 PF06745 KaiC: KaiC; InterPro 88.3 0.76 1.7E-05 44.5 5.1 46 30-76 22-71 (226)
240 PRK04328 hypothetical protein; 88.0 2 4.4E-05 42.4 8.0 44 31-75 27-73 (249)
241 PRK13342 recombination factor 87.9 2.3 5.1E-05 45.3 9.0 33 27-59 36-68 (413)
242 KOG0731|consensus 87.9 0.38 8.2E-06 54.2 2.9 37 25-61 342-378 (774)
243 PRK05800 cobU adenosylcobinami 87.8 0.74 1.6E-05 42.7 4.5 47 30-76 4-50 (170)
244 PHA03333 putative ATPase subun 87.3 5.9 0.00013 44.5 11.6 51 26-76 186-240 (752)
245 cd00544 CobU Adenosylcobinamid 87.2 1 2.2E-05 41.8 4.9 45 31-75 3-47 (169)
246 PRK14722 flhF flagellar biosyn 87.2 2 4.3E-05 45.0 7.7 22 28-49 138-159 (374)
247 PRK14873 primosome assembly pr 87.1 3.9 8.5E-05 46.3 10.5 94 312-407 170-270 (665)
248 PF01695 IstB_IS21: IstB-like 87.1 0.7 1.5E-05 43.2 3.9 39 27-66 47-88 (178)
249 TIGR02640 gas_vesic_GvpN gas v 87.0 0.64 1.4E-05 46.3 3.8 33 28-60 22-54 (262)
250 TIGR00580 mfd transcription-re 87.0 2.6 5.5E-05 49.6 9.2 87 312-400 482-579 (926)
251 KOG0651|consensus 86.4 0.69 1.5E-05 46.5 3.5 39 28-67 167-205 (388)
252 TIGR00959 ffh signal recogniti 86.2 2.2 4.7E-05 45.7 7.5 34 27-60 99-136 (428)
253 PRK05703 flhF flagellar biosyn 86.2 2.1 4.5E-05 45.9 7.4 21 29-49 223-243 (424)
254 KOG1807|consensus 86.1 0.91 2E-05 50.6 4.5 52 23-74 389-449 (1025)
255 PRK10689 transcription-repair 86.0 3.7 8E-05 49.5 10.0 88 312-400 631-728 (1147)
256 COG1222 RPT1 ATP-dependent 26S 86.0 0.74 1.6E-05 47.2 3.5 38 28-66 186-223 (406)
257 TIGR01425 SRP54_euk signal rec 85.5 3.3 7.2E-05 44.2 8.4 33 28-60 101-136 (429)
258 PRK12377 putative replication 85.5 1 2.2E-05 44.5 4.3 42 29-71 103-147 (248)
259 PF07728 AAA_5: AAA domain (dy 85.2 0.86 1.9E-05 40.3 3.3 31 31-61 3-33 (139)
260 PRK11054 helD DNA helicase IV; 85.2 0.94 2E-05 51.5 4.4 64 28-109 210-280 (684)
261 COG0464 SpoVK ATPases of the A 85.1 0.71 1.5E-05 50.5 3.3 46 28-74 277-322 (494)
262 cd03115 SRP The signal recogni 84.8 4.3 9.3E-05 37.3 8.0 29 31-59 4-35 (173)
263 cd01121 Sms Sms (bacterial rad 84.8 4.5 9.8E-05 42.5 9.0 44 31-75 86-132 (372)
264 KOG2340|consensus 84.7 7.1 0.00015 42.1 10.1 91 330-422 552-652 (698)
265 PRK09354 recA recombinase A; P 84.6 3.4 7.4E-05 42.9 7.7 36 31-66 64-102 (349)
266 COG0542 clpA ATP-binding subun 84.5 2.1 4.7E-05 48.7 6.7 51 32-84 526-578 (786)
267 PRK13341 recombination factor 84.2 3.2 6.9E-05 47.5 8.1 25 28-52 53-77 (725)
268 COG2256 MGS1 ATPase related to 84.2 1.6 3.5E-05 45.5 5.1 49 26-74 47-95 (436)
269 PRK08116 hypothetical protein; 83.9 1.3 2.9E-05 44.3 4.4 41 30-71 117-160 (268)
270 PF08423 Rad51: Rad51; InterP 83.5 4.4 9.6E-05 40.2 7.9 42 32-73 43-93 (256)
271 PRK14949 DNA polymerase III su 83.5 3.3 7.2E-05 47.9 7.7 49 2-52 14-63 (944)
272 PF13207 AAA_17: AAA domain; P 83.2 1.2 2.7E-05 38.1 3.4 25 31-55 3-27 (121)
273 PLN00020 ribulose bisphosphate 83.2 0.94 2E-05 47.1 2.9 41 29-70 150-190 (413)
274 PRK12724 flagellar biosynthesi 83.1 4.5 9.7E-05 43.0 8.0 20 30-49 226-245 (432)
275 PRK11823 DNA repair protein Ra 83.1 4.9 0.00011 43.4 8.6 44 31-75 84-130 (446)
276 PF04665 Pox_A32: Poxvirus A32 83.0 0.92 2E-05 44.5 2.7 33 28-60 14-49 (241)
277 PRK05973 replicative DNA helic 82.8 2 4.4E-05 42.0 5.1 44 31-75 68-114 (237)
278 COG0467 RAD55 RecA-superfamily 82.8 2.1 4.5E-05 42.5 5.2 46 29-75 25-73 (260)
279 PRK06526 transposase; Provisio 82.8 0.81 1.8E-05 45.4 2.3 41 28-73 99-142 (254)
280 PRK11889 flhF flagellar biosyn 82.7 1.6 3.4E-05 46.1 4.3 44 27-70 241-290 (436)
281 COG0324 MiaA tRNA delta(2)-iso 82.6 0.91 2E-05 46.1 2.6 27 28-54 4-30 (308)
282 TIGR03878 thermo_KaiC_2 KaiC d 82.6 2.3 4.9E-05 42.3 5.4 31 30-60 39-72 (259)
283 PRK07003 DNA polymerase III su 82.5 4.4 9.4E-05 46.2 8.0 42 11-52 21-63 (830)
284 PRK06921 hypothetical protein; 82.4 1.9 4.1E-05 43.2 4.7 39 28-67 118-160 (266)
285 PRK10919 ATP-dependent DNA hel 82.3 1.3 2.8E-05 50.4 4.0 67 28-109 16-89 (672)
286 PF05496 RuvB_N: Holliday junc 82.2 2.7 5.9E-05 40.7 5.5 29 28-56 51-79 (233)
287 PF13625 Helicase_C_3: Helicas 82.0 1.3 2.9E-05 39.0 3.1 53 177-231 1-53 (129)
288 PRK03992 proteasome-activating 81.6 1.4 3.1E-05 46.6 3.8 33 28-60 166-198 (389)
289 PRK07952 DNA replication prote 81.2 2 4.4E-05 42.3 4.4 40 29-73 101-143 (244)
290 PRK14729 miaA tRNA delta(2)-is 80.9 1.3 2.8E-05 45.0 2.9 29 30-60 7-35 (300)
291 cd01393 recA_like RecA is a b 80.6 6.8 0.00015 37.7 7.9 34 30-63 22-64 (226)
292 PRK06835 DNA replication prote 80.3 2 4.3E-05 44.4 4.2 39 28-67 184-225 (329)
293 PRK08181 transposase; Validate 80.1 1.7 3.8E-05 43.4 3.6 39 28-67 107-148 (269)
294 PHA02544 44 clamp loader, smal 79.9 3.4 7.3E-05 42.1 5.8 34 29-62 44-78 (316)
295 PRK04301 radA DNA repair and r 79.8 6.4 0.00014 40.4 7.7 31 32-62 107-146 (317)
296 TIGR03880 KaiC_arch_3 KaiC dom 79.6 3.3 7.2E-05 40.0 5.3 45 30-75 19-66 (224)
297 TIGR02881 spore_V_K stage V sp 79.6 1.7 3.7E-05 43.2 3.3 19 31-49 46-64 (261)
298 cd01123 Rad51_DMC1_radA Rad51_ 79.4 6.2 0.00013 38.2 7.2 32 31-62 23-63 (235)
299 PLN02840 tRNA dimethylallyltra 79.4 1.1 2.4E-05 47.5 2.0 24 30-53 24-47 (421)
300 PTZ00454 26S protease regulato 79.3 2.1 4.5E-05 45.5 4.0 35 26-60 178-212 (398)
301 KOG0739|consensus 79.2 2.4 5.2E-05 42.5 4.1 47 27-74 166-212 (439)
302 COG1198 PriA Primosomal protei 79.2 5.8 0.00013 45.2 7.6 89 310-401 225-320 (730)
303 COG1875 NYN ribonuclease and A 79.1 3.1 6.7E-05 43.0 4.9 34 217-250 359-392 (436)
304 PRK11034 clpA ATP-dependent Cl 79.0 4.8 0.0001 46.3 7.1 27 30-56 491-517 (758)
305 PRK07764 DNA polymerase III su 78.9 6.9 0.00015 45.5 8.4 48 2-51 13-61 (824)
306 COG3973 Superfamily I DNA and 78.9 2.3 5E-05 46.6 4.1 39 28-66 226-274 (747)
307 TIGR02768 TraA_Ti Ti-type conj 78.8 4.2 9.2E-05 46.8 6.6 42 28-69 369-413 (744)
308 TIGR02238 recomb_DMC1 meiotic 78.8 6.9 0.00015 40.1 7.5 31 32-62 101-140 (313)
309 TIGR00416 sms DNA repair prote 78.7 7.4 0.00016 42.1 8.1 44 31-75 98-144 (454)
310 PRK05986 cob(I)alamin adenolsy 78.7 4.2 9E-05 38.4 5.4 29 31-59 26-57 (191)
311 PRK00091 miaA tRNA delta(2)-is 78.7 1.7 3.7E-05 44.4 3.0 25 29-53 6-30 (307)
312 COG1224 TIP49 DNA helicase TIP 77.8 1.4 2.9E-05 45.3 2.0 28 26-53 64-91 (450)
313 PRK14959 DNA polymerase III su 77.8 2.1 4.6E-05 47.7 3.7 49 2-52 14-63 (624)
314 PLN02165 adenylate isopentenyl 77.7 2 4.3E-05 44.2 3.2 25 29-53 45-69 (334)
315 PLN03187 meiotic recombination 77.5 7.9 0.00017 40.2 7.5 31 32-62 131-170 (344)
316 PF03237 Terminase_6: Terminas 77.5 10 0.00023 38.9 8.7 37 31-67 1-42 (384)
317 TIGR01242 26Sp45 26S proteasom 77.0 2.4 5.2E-05 44.4 3.7 32 28-59 157-188 (364)
318 cd01131 PilT Pilus retraction 77.0 2.1 4.5E-05 40.7 2.9 33 31-63 5-41 (198)
319 PRK05342 clpX ATP-dependent pr 76.9 1.9 4E-05 46.0 2.9 32 27-58 108-139 (412)
320 PRK14531 adenylate kinase; Pro 76.9 2.1 4.6E-05 40.0 2.9 27 28-54 3-29 (183)
321 TIGR02880 cbbX_cfxQ probable R 76.8 2.1 4.5E-05 43.3 3.0 21 29-49 60-80 (284)
322 PF06309 Torsin: Torsin; Inte 76.6 3.2 7E-05 36.4 3.7 43 34-76 60-113 (127)
323 PRK09183 transposase/IS protei 76.4 2.6 5.5E-05 42.0 3.5 37 30-67 105-144 (259)
324 PF06733 DEAD_2: DEAD_2; Inte 76.2 2.2 4.7E-05 39.5 2.8 38 95-140 118-157 (174)
325 PRK08727 hypothetical protein; 76.1 3.9 8.4E-05 39.9 4.7 30 30-59 44-76 (233)
326 PTZ00361 26 proteosome regulat 76.0 3 6.6E-05 44.7 4.1 34 27-60 217-250 (438)
327 COG1223 Predicted ATPase (AAA+ 75.9 2.2 4.7E-05 42.0 2.7 37 29-66 153-189 (368)
328 PF05621 TniB: Bacterial TniB 75.9 9.6 0.00021 38.6 7.4 85 30-141 64-158 (302)
329 PHA02244 ATPase-like protein 75.8 2.6 5.7E-05 43.9 3.5 32 28-59 120-151 (383)
330 TIGR00174 miaA tRNA isopenteny 75.6 2.4 5.1E-05 42.8 3.1 23 31-53 3-25 (287)
331 PRK14960 DNA polymerase III su 75.4 2.5 5.5E-05 47.3 3.4 25 28-52 38-62 (702)
332 CHL00181 cbbX CbbX; Provisiona 75.2 2.8 6.1E-05 42.4 3.5 20 30-49 62-81 (287)
333 PRK06067 flagellar accessory p 75.2 5 0.00011 39.1 5.2 45 30-75 28-75 (234)
334 PRK14958 DNA polymerase III su 75.1 14 0.0003 40.6 9.1 41 12-52 22-63 (509)
335 PRK12726 flagellar biosynthesi 75.1 4.4 9.5E-05 42.6 4.9 45 28-72 207-257 (407)
336 TIGR02655 circ_KaiC circadian 75.0 4.4 9.4E-05 44.3 5.1 47 29-76 23-73 (484)
337 PRK12402 replication factor C 74.8 3.7 8E-05 42.1 4.4 44 29-72 38-85 (337)
338 cd00983 recA RecA is a bacter 74.7 4.6 0.0001 41.5 4.9 38 31-68 59-99 (325)
339 PF06068 TIP49: TIP49 C-termin 74.7 2.4 5.1E-05 44.1 2.8 35 27-61 50-86 (398)
340 TIGR03881 KaiC_arch_4 KaiC dom 74.1 5.8 0.00013 38.3 5.3 44 30-74 23-69 (229)
341 PRK12323 DNA polymerase III su 74.1 12 0.00026 42.1 8.2 42 11-52 21-63 (700)
342 PF07015 VirC1: VirC1 protein; 74.0 16 0.00034 35.6 8.1 37 36-73 11-52 (231)
343 TIGR02012 tigrfam_recA protein 73.8 5 0.00011 41.2 4.9 35 31-65 59-96 (321)
344 KOG0729|consensus 73.7 3.4 7.3E-05 40.7 3.4 41 28-69 212-252 (435)
345 PF05876 Terminase_GpA: Phage 73.7 7.6 0.00017 43.1 6.7 94 30-137 36-143 (557)
346 TIGR00382 clpX endopeptidase C 73.6 3 6.4E-05 44.4 3.3 31 27-57 116-146 (413)
347 PRK14723 flhF flagellar biosyn 73.4 6.5 0.00014 45.0 6.1 37 358-394 461-500 (767)
348 PRK08118 topology modulation p 73.4 2.8 6E-05 38.7 2.7 26 29-54 3-28 (167)
349 PF00406 ADK: Adenylate kinase 73.1 3.3 7.2E-05 37.2 3.1 34 32-68 1-34 (151)
350 PRK08939 primosomal protein Dn 72.9 4.2 9.1E-05 41.5 4.1 40 29-69 158-200 (306)
351 CHL00195 ycf46 Ycf46; Provisio 72.8 3.2 7E-05 45.2 3.4 33 28-60 260-292 (489)
352 PRK06995 flhF flagellar biosyn 72.8 6.4 0.00014 42.7 5.7 20 30-49 259-278 (484)
353 PRK11773 uvrD DNA-dependent he 72.8 5.9 0.00013 45.6 5.8 66 28-109 23-95 (721)
354 KOG0734|consensus 72.7 2.5 5.5E-05 45.6 2.5 35 26-60 336-370 (752)
355 cd00984 DnaB_C DnaB helicase C 72.6 3.7 7.9E-05 40.0 3.5 30 31-60 17-50 (242)
356 TIGR03345 VI_ClpV1 type VI sec 72.5 9.4 0.0002 44.7 7.3 30 31-60 600-631 (852)
357 KOG0652|consensus 72.3 1.7 3.8E-05 42.6 1.1 33 27-59 205-237 (424)
358 PF12846 AAA_10: AAA-like doma 72.2 3.6 7.7E-05 41.2 3.5 34 29-62 3-39 (304)
359 TIGR01075 uvrD DNA helicase II 72.1 5.6 0.00012 45.7 5.4 66 28-109 18-90 (715)
360 PHA00729 NTP-binding motif con 72.0 5.3 0.00012 38.8 4.4 23 29-51 19-41 (226)
361 PF00910 RNA_helicase: RNA hel 71.9 13 0.00028 31.3 6.3 17 32-48 3-19 (107)
362 PF13481 AAA_25: AAA domain; P 71.9 6.2 0.00013 36.8 4.8 46 30-76 35-93 (193)
363 PF03354 Terminase_1: Phage Te 71.9 7 0.00015 42.6 5.8 51 27-77 22-79 (477)
364 PLN02748 tRNA dimethylallyltra 71.7 2.3 4.9E-05 46.0 1.9 24 29-52 24-47 (468)
365 TIGR00390 hslU ATP-dependent p 71.7 3.5 7.7E-05 43.7 3.3 34 27-60 47-80 (441)
366 KOG1133|consensus 71.6 1.8E+02 0.004 32.9 16.7 71 330-402 629-717 (821)
367 PF13671 AAA_33: AAA domain; P 71.4 4.6 0.0001 35.5 3.6 22 31-52 3-24 (143)
368 TIGR01313 therm_gnt_kin carboh 71.4 3.7 8.1E-05 37.3 3.1 22 31-52 2-23 (163)
369 cd01394 radB RadB. The archaea 71.3 7.5 0.00016 37.2 5.4 30 31-60 23-55 (218)
370 COG1066 Sms Predicted ATP-depe 71.3 20 0.00043 37.8 8.5 77 32-136 98-176 (456)
371 TIGR02655 circ_KaiC circadian 71.2 6.2 0.00013 43.1 5.2 45 31-76 267-314 (484)
372 TIGR03689 pup_AAA proteasome A 71.1 4 8.6E-05 44.7 3.6 29 26-54 215-243 (512)
373 PRK08233 hypothetical protein; 71.1 4.7 0.0001 37.2 3.7 28 33-60 9-36 (182)
374 TIGR01359 UMP_CMP_kin_fam UMP- 70.9 3.8 8.2E-05 38.0 3.1 34 31-67 3-36 (183)
375 PRK14956 DNA polymerase III su 70.7 14 0.0003 40.1 7.5 23 30-52 43-65 (484)
376 PRK09361 radB DNA repair and r 70.7 6.9 0.00015 37.7 5.0 31 31-61 27-60 (225)
377 PRK14530 adenylate kinase; Pro 70.7 3.6 7.8E-05 39.5 2.9 25 29-53 5-29 (215)
378 PRK00131 aroK shikimate kinase 70.6 4 8.6E-05 37.3 3.1 28 29-56 6-33 (175)
379 PF00154 RecA: recA bacterial 70.6 18 0.00039 37.2 8.0 41 32-72 58-101 (322)
380 PRK08691 DNA polymerase III su 70.4 4.6 0.0001 45.6 4.0 24 29-52 40-63 (709)
381 PRK14962 DNA polymerase III su 70.4 13 0.00029 40.3 7.5 23 30-52 39-61 (472)
382 COG1200 RecG RecG-like helicas 70.4 23 0.0005 39.7 9.2 87 312-400 293-390 (677)
383 PRK07261 topology modulation p 70.4 3.9 8.4E-05 37.8 3.0 26 29-54 2-27 (171)
384 PRK07994 DNA polymerase III su 70.3 3.3 7.1E-05 46.6 2.9 48 3-52 15-63 (647)
385 PRK14961 DNA polymerase III su 70.3 3.9 8.5E-05 42.8 3.3 48 3-52 15-63 (363)
386 TIGR01243 CDC48 AAA family ATP 70.2 3.7 8E-05 47.3 3.4 35 27-61 487-521 (733)
387 PF07724 AAA_2: AAA domain (Cd 70.1 3.7 8E-05 38.1 2.7 36 30-65 6-44 (171)
388 TIGR00064 ftsY signal recognit 69.9 7.6 0.00016 38.9 5.1 32 28-59 73-107 (272)
389 PRK06893 DNA replication initi 69.8 4.9 0.00011 39.1 3.7 29 31-59 43-74 (229)
390 PF13479 AAA_24: AAA domain 69.5 2.8 6E-05 40.4 1.8 30 26-60 2-31 (213)
391 KOG2028|consensus 69.5 7.8 0.00017 40.1 5.0 48 26-73 161-211 (554)
392 TIGR01074 rep ATP-dependent DN 69.4 8.1 0.00018 44.0 5.9 67 28-109 15-88 (664)
393 PF05970 PIF1: PIF1-like helic 69.4 9.7 0.00021 39.9 6.0 53 27-79 22-79 (364)
394 smart00489 DEXDc3 DEAD-like he 69.3 3.4 7.4E-05 41.8 2.5 39 95-140 210-248 (289)
395 smart00488 DEXDc2 DEAD-like he 69.3 3.4 7.4E-05 41.8 2.5 39 95-140 210-248 (289)
396 PRK13947 shikimate kinase; Pro 69.1 4.5 9.7E-05 37.0 3.1 25 31-55 5-29 (171)
397 PRK08084 DNA replication initi 69.1 7 0.00015 38.2 4.6 22 28-49 46-67 (235)
398 PHA03368 DNA packaging termina 68.8 21 0.00045 40.2 8.5 49 26-74 253-306 (738)
399 TIGR02782 TrbB_P P-type conjug 68.7 4.9 0.00011 40.9 3.5 38 27-64 132-174 (299)
400 PRK09111 DNA polymerase III su 68.6 17 0.00036 40.8 7.9 26 27-52 46-71 (598)
401 PRK14532 adenylate kinase; Pro 68.4 4.5 9.8E-05 37.8 3.0 33 31-66 4-36 (188)
402 cd01428 ADK Adenylate kinase ( 68.4 4.5 9.7E-05 37.8 3.0 22 31-52 3-24 (194)
403 KOG0733|consensus 68.3 5.5 0.00012 43.8 3.9 42 30-72 548-589 (802)
404 PRK00771 signal recognition pa 68.1 8.4 0.00018 41.4 5.3 33 28-60 96-131 (437)
405 PRK10865 protein disaggregatio 68.1 15 0.00032 43.2 7.7 92 31-234 602-695 (857)
406 COG0468 RecA RecA/RadA recombi 68.0 23 0.0005 35.6 8.0 41 32-72 65-108 (279)
407 PRK03839 putative kinase; Prov 67.9 4.7 0.0001 37.4 3.0 25 31-55 4-28 (180)
408 PF02534 T4SS-DNA_transf: Type 67.7 5.7 0.00012 43.0 4.0 56 28-87 45-101 (469)
409 CHL00206 ycf2 Ycf2; Provisiona 67.0 4.1 8.9E-05 50.6 2.9 42 27-69 1630-1671(2281)
410 PHA02774 E1; Provisional 67.0 5.6 0.00012 43.9 3.6 36 26-61 433-468 (613)
411 PRK05896 DNA polymerase III su 66.9 5.7 0.00012 44.2 3.8 48 2-51 14-62 (605)
412 PRK05057 aroK shikimate kinase 66.8 5 0.00011 37.1 2.9 26 29-54 6-31 (172)
413 PRK13894 conjugal transfer ATP 66.7 5.9 0.00013 40.7 3.7 39 26-64 147-190 (319)
414 cd00071 GMPK Guanosine monopho 66.7 5 0.00011 35.6 2.8 22 31-52 3-24 (137)
415 PF01935 DUF87: Domain of unkn 66.6 5 0.00011 38.8 3.0 38 27-64 23-64 (229)
416 PRK06762 hypothetical protein; 66.5 6 0.00013 36.0 3.4 29 31-59 6-34 (166)
417 PRK00080 ruvB Holliday junctio 66.5 5.4 0.00012 41.0 3.4 27 28-54 52-78 (328)
418 PLN03025 replication factor C 66.4 4.6 9.9E-05 41.5 2.8 26 26-51 33-58 (319)
419 TIGR00635 ruvB Holliday juncti 66.3 5.7 0.00012 40.2 3.5 25 28-52 31-55 (305)
420 KOG1533|consensus 66.3 5.2 0.00011 38.8 2.9 29 30-58 5-36 (290)
421 TIGR03420 DnaA_homol_Hda DnaA 66.0 6.7 0.00014 37.6 3.8 24 27-50 38-61 (226)
422 COG1197 Mfd Transcription-repa 66.0 32 0.00069 41.0 9.6 110 328-451 641-765 (1139)
423 PTZ00088 adenylate kinase 1; P 65.9 5.4 0.00012 38.9 3.0 35 29-66 8-42 (229)
424 cd02020 CMPK Cytidine monophos 65.8 5.7 0.00012 35.0 3.0 25 31-55 3-27 (147)
425 PRK14528 adenylate kinase; Pro 65.8 5.3 0.00011 37.5 2.9 26 29-54 3-28 (186)
426 TIGR01650 PD_CobS cobaltochela 65.4 5.9 0.00013 40.7 3.3 33 28-60 65-97 (327)
427 TIGR01351 adk adenylate kinase 65.1 5.7 0.00012 38.0 3.0 22 31-52 3-24 (210)
428 PRK10416 signal recognition pa 65.0 7.1 0.00015 40.1 3.9 31 29-59 116-149 (318)
429 TIGR01241 FtsH_fam ATP-depende 65.0 4.5 9.8E-05 44.3 2.6 34 27-60 88-121 (495)
430 TIGR01054 rgy reverse gyrase. 64.9 22 0.00049 43.1 8.5 72 328-400 119-205 (1171)
431 PRK02496 adk adenylate kinase; 64.7 5.7 0.00012 36.9 2.9 25 29-53 3-27 (184)
432 cd01126 TraG_VirD4 The TraG/Tr 64.4 5.6 0.00012 41.9 3.1 54 30-87 2-56 (384)
433 TIGR02639 ClpA ATP-dependent C 64.2 8 0.00017 44.6 4.5 26 25-50 201-226 (731)
434 PRK05642 DNA replication initi 64.0 8 0.00017 37.8 3.9 33 28-60 46-81 (234)
435 PRK13889 conjugal transfer rel 64.0 13 0.00028 44.1 6.1 38 28-65 363-403 (988)
436 TIGR02236 recomb_radA DNA repa 63.9 13 0.00028 37.9 5.5 32 31-62 99-139 (310)
437 PRK13851 type IV secretion sys 63.8 6.2 0.00013 41.0 3.2 38 27-64 162-201 (344)
438 cd01122 GP4d_helicase GP4d_hel 63.8 6.9 0.00015 38.9 3.5 43 30-73 33-79 (271)
439 TIGR03346 chaperone_ClpB ATP-d 63.7 18 0.00038 42.6 7.3 92 31-234 599-692 (852)
440 PRK05201 hslU ATP-dependent pr 63.6 5.5 0.00012 42.3 2.8 32 27-58 50-81 (443)
441 COG1102 Cmk Cytidylate kinase 63.4 6.6 0.00014 36.0 2.9 38 31-71 4-41 (179)
442 PRK09519 recA DNA recombinatio 63.4 24 0.00052 40.7 7.9 34 32-65 65-101 (790)
443 KOG0736|consensus 63.3 4.1 8.9E-05 45.9 1.8 26 26-51 704-729 (953)
444 KOG0728|consensus 63.3 8.8 0.00019 37.6 3.8 42 28-70 182-223 (404)
445 PRK13949 shikimate kinase; Pro 63.2 6.6 0.00014 36.2 3.0 26 29-54 3-28 (169)
446 KOG0737|consensus 62.9 8.8 0.00019 39.7 4.0 48 28-76 128-175 (386)
447 COG0563 Adk Adenylate kinase a 62.7 6.8 0.00015 36.6 3.0 24 29-52 2-25 (178)
448 PRK00149 dnaA chromosomal repl 62.7 8.3 0.00018 41.6 4.1 44 28-72 149-197 (450)
449 KOG1131|consensus 62.5 11 0.00023 40.8 4.6 70 353-423 564-670 (755)
450 PRK04132 replication factor C 62.4 31 0.00067 40.2 8.7 45 32-76 571-621 (846)
451 TIGR01420 pilT_fam pilus retra 62.4 7.6 0.00017 40.3 3.6 36 29-64 124-163 (343)
452 PRK06645 DNA polymerase III su 62.4 5.7 0.00012 43.5 2.7 25 28-52 44-68 (507)
453 PF09439 SRPRB: Signal recogni 62.3 5.3 0.00011 37.4 2.1 25 26-50 2-26 (181)
454 PRK14955 DNA polymerase III su 62.3 7.5 0.00016 41.3 3.6 48 3-52 15-63 (397)
455 PRK12678 transcription termina 62.3 12 0.00026 41.4 5.0 46 28-75 417-464 (672)
456 PRK04195 replication factor C 62.1 11 0.00024 41.0 5.0 35 27-61 39-73 (482)
457 TIGR00150 HI0065_YjeE ATPase, 61.9 5 0.00011 35.6 1.8 36 31-66 26-61 (133)
458 PRK00279 adk adenylate kinase; 61.8 7 0.00015 37.5 3.0 23 30-52 3-25 (215)
459 COG0552 FtsY Signal recognitio 61.8 43 0.00094 34.4 8.6 47 30-77 142-191 (340)
460 COG2804 PulE Type II secretory 61.7 5.7 0.00012 42.8 2.5 21 32-52 263-283 (500)
461 PLN02199 shikimate kinase 61.6 10 0.00022 38.4 4.1 39 27-68 102-140 (303)
462 PRK14971 DNA polymerase III su 61.4 14 0.00029 41.7 5.5 49 1-51 14-63 (614)
463 TIGR00362 DnaA chromosomal rep 61.3 8.7 0.00019 40.8 3.9 37 29-66 138-179 (405)
464 KOG0743|consensus 61.1 8 0.00017 41.1 3.4 38 23-60 231-268 (457)
465 PRK05480 uridine/cytidine kina 61.0 9.5 0.00021 36.3 3.7 22 31-52 10-31 (209)
466 PRK06547 hypothetical protein; 60.9 8.1 0.00018 35.8 3.1 23 32-54 20-42 (172)
467 cd02023 UMPK Uridine monophosp 60.8 9.1 0.0002 36.1 3.5 31 32-62 4-34 (198)
468 PLN03186 DNA repair protein RA 60.8 31 0.00066 35.9 7.6 32 31-62 127-167 (342)
469 PRK14964 DNA polymerase III su 60.7 7.8 0.00017 42.2 3.4 24 28-51 36-59 (491)
470 TIGR03743 SXT_TraD conjugative 60.6 21 0.00045 40.4 6.8 61 26-88 175-240 (634)
471 PRK13833 conjugal transfer pro 60.6 8.5 0.00018 39.6 3.5 36 29-64 146-186 (323)
472 COG2805 PilT Tfp pilus assembl 60.5 5.8 0.00013 40.0 2.1 20 32-51 130-149 (353)
473 CHL00176 ftsH cell division pr 60.3 6.4 0.00014 44.4 2.7 33 28-60 217-249 (638)
474 TIGR01360 aden_kin_iso1 adenyl 60.2 8 0.00017 35.8 3.0 23 30-52 6-28 (188)
475 PRK09302 circadian clock prote 60.1 14 0.00029 40.7 5.2 45 30-75 34-82 (509)
476 PRK06217 hypothetical protein; 60.1 8.3 0.00018 35.9 3.1 25 30-54 4-28 (183)
477 cd00464 SK Shikimate kinase (S 59.9 8.5 0.00019 34.3 3.1 24 31-54 3-26 (154)
478 CHL00095 clpC Clp protease ATP 59.8 19 0.00041 42.1 6.6 22 30-51 542-563 (821)
479 KOG0741|consensus 59.7 4.3 9.3E-05 43.9 1.2 17 28-44 257-273 (744)
480 KOG1942|consensus 59.5 6.8 0.00015 39.3 2.4 28 26-53 63-90 (456)
481 KOG0740|consensus 59.3 6.8 0.00015 41.6 2.5 44 29-73 188-231 (428)
482 smart00763 AAA_PrkA PrkA AAA d 59.1 8.7 0.00019 40.0 3.2 21 31-51 82-102 (361)
483 PRK14701 reverse gyrase; Provi 58.9 35 0.00077 42.8 8.9 55 329-384 121-186 (1638)
484 PF00437 T2SE: Type II/IV secr 58.8 11 0.00023 37.5 3.9 38 27-64 127-167 (270)
485 COG1110 Reverse gyrase [DNA re 58.7 35 0.00076 40.0 8.1 63 328-391 123-197 (1187)
486 PTZ00293 thymidine kinase; Pro 58.6 11 0.00024 36.2 3.6 32 31-62 8-42 (211)
487 CHL00095 clpC Clp protease ATP 58.5 10 0.00022 44.3 4.2 26 25-50 198-223 (821)
488 PF13238 AAA_18: AAA domain; P 58.3 8.3 0.00018 32.9 2.6 20 32-51 3-22 (129)
489 COG0541 Ffh Signal recognition 58.3 28 0.0006 37.0 6.7 77 37-135 110-189 (451)
490 PRK08903 DnaA regulatory inact 58.2 10 0.00023 36.5 3.6 32 28-59 43-77 (227)
491 cd01127 TrwB Bacterial conjuga 58.2 12 0.00026 39.9 4.2 39 28-66 43-84 (410)
492 PF12775 AAA_7: P-loop contain 57.9 6.6 0.00014 39.4 2.1 27 26-52 32-58 (272)
493 COG2255 RuvB Holliday junction 57.7 9.4 0.0002 38.3 3.0 25 29-53 54-78 (332)
494 PLN02674 adenylate kinase 57.7 8.4 0.00018 37.9 2.8 25 28-52 32-56 (244)
495 PRK09302 circadian clock prote 57.7 16 0.00035 40.1 5.3 44 31-75 277-323 (509)
496 cd02021 GntK Gluconate kinase 57.6 9.5 0.00021 34.0 2.9 22 31-52 3-24 (150)
497 PRK14957 DNA polymerase III su 57.5 9.2 0.0002 42.3 3.3 49 2-52 14-63 (546)
498 TIGR01073 pcrA ATP-dependent D 57.3 16 0.00035 42.1 5.4 66 28-109 18-90 (726)
499 PF07726 AAA_3: ATPase family 57.3 5.5 0.00012 35.1 1.3 27 29-55 1-27 (131)
500 TIGR03015 pepcterm_ATPase puta 57.3 9.8 0.00021 37.6 3.3 29 31-59 47-75 (269)
No 1
>KOG1123|consensus
Probab=100.00 E-value=1.7e-106 Score=810.89 Aligned_cols=461 Identities=66% Similarity=1.038 Sum_probs=436.7
Q ss_pred chhhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEE
Q psy11640 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICR 85 (552)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~ 85 (552)
+|+--|+|--.|-|-- -+-+-.++|||||+|||+++++++++.++++||||.+.+.|+||+.+|+.|.++.+..|++
T Consensus 302 ~iRpYQEksL~KMFGN---gRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred ccCchHHHHHHHHhCC---CcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 4555565554444421 2567789999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCC-CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhh
Q psy11640 86 FTSEAKDKP-MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYR 164 (552)
Q Consensus 86 ~~g~~~~~~-~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~ 164 (552)
|+++.++++ .+++|+|+||+|+++.++||+++++.|++|..++|+++|+|
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllD----------------------------- 429 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLD----------------------------- 429 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEee-----------------------------
Confidence 999999964 77999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecce
Q psy11640 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTAT 244 (552)
Q Consensus 165 ~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTAT 244 (552)
|+|.+|+.+||+++..++++|+||||||
T Consensus 430 ----------------------------------------------------EVHvvPA~MFRRVlsiv~aHcKLGLTAT 457 (776)
T KOG1123|consen 430 ----------------------------------------------------EVHVVPAKMFRRVLSIVQAHCKLGLTAT 457 (776)
T ss_pred ----------------------------------------------------hhccchHHHHHHHHHHHHHHhhccceeE
Confidence 9999999999999999999999999999
Q ss_pred ecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHH
Q psy11640 245 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIA 324 (552)
Q Consensus 245 p~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~ 324 (552)
++|+|+++.+|+++|||++|+++|++|.+.|+|++++|.+|||||++++|++|+....+++.++++|||+|+++|+.||+
T Consensus 458 LvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~ 537 (776)
T KOG1123|consen 458 LVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIK 537 (776)
T ss_pred EeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCeEEEEeccHHHHHHHHHHcCCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccC
Q psy11640 325 YHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH 404 (552)
Q Consensus 325 ~~~~~g~kvIVF~~~~~~~~~l~~~L~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~ 404 (552)
+|+.+|+|+|||++++..+..++-.|+.++|+|.|++.||.+||++|+.|+.+|.||.|+||++.||||+|+|+|++++|
T Consensus 538 ~HE~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH 617 (776)
T KOG1123|consen 538 FHERRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 617 (776)
T ss_pred HHHhcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEeecccccccccCCCCCChHH
Q psy11640 405 GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDE 484 (552)
Q Consensus 405 ~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~ 484 (552)
.+|++|..||+|||+|++.. +.+++|+|||+||++||.||+|+.+||+||++|||+|+||+++.+|++.+++.|.|+++
T Consensus 618 ~GSRRQEAQRLGRILRAKk~-~de~fnafFYSLVS~DTqEM~YStKRQ~FLidQGYsfkVit~L~gme~~~~l~y~skee 696 (776)
T KOG1123|consen 618 GGSRRQEAQRLGRILRAKKR-NDEEFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVITNLPGMENLEDLAYASKEE 696 (776)
T ss_pred ccchHHHHHHHHHHHHHhhc-CccccceeeeeeeecchHHHHhhhhhhhhhhhcCceEEEeecCCCcCcCcccccCCHHH
Confidence 99999999999999999975 45999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhhhhccccCCCCCCccccccccccccCCCCceeeeeccCCC------CCchhhhhcC
Q psy11640 485 QGQLLQQVLAASETDADEERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFSNV------KHPLFKKFRG 552 (552)
Q Consensus 485 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 552 (552)
|.+|||.||.++|.++|+|..+++ ...++.+.|+.|+|++|||||||+|+|++.+.+ .||+|+.||+
T Consensus 697 q~~LLq~Vl~a~d~~~e~E~~~~~-~~~~~~a~r~~gslssmsGgd~m~Y~ey~~~~~k~~~~~~~p~~~~~r~ 769 (776)
T KOG1123|consen 697 QLELLQKVLLASDLDAELEDLEDE-SRASSKAVRSEGSLSSMSGGDDMAYMEYNSSRNKKLIKSVHPLFKRFRK 769 (776)
T ss_pred HHHHHHHHHhcchhhhcccccccc-ccccccceecccccccccCCCcceeeeeccccccccccccccchhHHHH
Confidence 999999999999999999988777 355678999999999999999999999997665 5999999885
No 2
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-85 Score=717.13 Aligned_cols=461 Identities=68% Similarity=1.076 Sum_probs=417.4
Q ss_pred cchhhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEE
Q psy11640 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMIC 84 (552)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~ 84 (552)
-.++.-|+++..+.+. ..+.+..++|||||+|||++++++++..++++|||||+++|++||.++|.+|+.++...|.
T Consensus 254 ~~LRpYQ~eAl~~~~~---~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~ 330 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQIC 330 (732)
T ss_pred CCcCHHHHHHHHHHHh---cCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEE
Confidence 3567778888876642 2234678999999999999999999999999999999999999999999999988778899
Q ss_pred EEecCcccCC-CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhh
Q psy11640 85 RFTSEAKDKP-MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDY 163 (552)
Q Consensus 85 ~~~g~~~~~~-~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~ 163 (552)
.++|+.++.. ...+|+|+||+++.+..+++......+++|....|++||+|
T Consensus 331 ~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~D---------------------------- 382 (732)
T TIGR00603 331 RFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLD---------------------------- 382 (732)
T ss_pred EEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEE----------------------------
Confidence 9999876643 34789999999998776676666778888888899999999
Q ss_pred hhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecc
Q psy11640 164 RAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTA 243 (552)
Q Consensus 164 ~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTA 243 (552)
|+|++++..|++++..++++++|||||
T Consensus 383 -----------------------------------------------------EvH~lpA~~fr~il~~l~a~~RLGLTA 409 (732)
T TIGR00603 383 -----------------------------------------------------EVHVVPAAMFRRVLTIVQAHCKLGLTA 409 (732)
T ss_pred -----------------------------------------------------ccccccHHHHHHHHHhcCcCcEEEEee
Confidence 788889999999999999999999999
Q ss_pred eecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHH
Q psy11640 244 TLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLI 323 (552)
Q Consensus 244 Tp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll 323 (552)
||.|+|+.+.++++++||++|+.+|.+|++.|+|++++|.++||+|+++++.+|+......+.+++.++|+|+.+|..|+
T Consensus 410 TP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li 489 (732)
T TIGR00603 410 TLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLI 489 (732)
T ss_pred cCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998777777788899999999999999
Q ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHcCCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEecc
Q psy11640 324 AYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISS 403 (552)
Q Consensus 324 ~~~~~~g~kvIVF~~~~~~~~~l~~~L~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~ 403 (552)
+.|+.+++++||||+++.+++.++..|++++|+|+|++.+|.+++++|++++.+++||+|++|++|||+|+|++||++++
T Consensus 490 ~~he~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 490 RFHEQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred HHHhhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 99888899999999999999999999999999999999999999999996568999999999999999999999999997
Q ss_pred CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEeecccccccccCCCCCChH
Q psy11640 404 HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRD 483 (552)
Q Consensus 404 ~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~ 483 (552)
+++|+.||+||+||++|+++++.+++++++||+||+.+|.|+.|+.+||+||.+|||+|+||+++.++...+++.|.+++
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~~~vi~~~~~~~~~~~l~~~~~~ 649 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYSFKVITHLPGMDNESNLAYSSKE 649 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCeeEEEecCcccccccccccCCHH
Confidence 66899999999999999998776447899999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHhccccchhhhhhccccCCC-----------CCCccccccccccccCCCCceeeeeccCCC------CCch
Q psy11640 484 EQGQLLQQVLAASETDADEERVAGEVGGV-----------SGGFKRSGGTMASLSGADDAVYHESRFSNV------KHPL 546 (552)
Q Consensus 484 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 546 (552)
+|.+||+++|.+++.++++|..++|++.. .+.+.|+.|+|++||||++|+|+|++++++ .|||
T Consensus 650 ~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 729 (732)
T TIGR00603 650 EQLELLQKVLLAGDLDAELEVLEGEFGSRALGASRSMSSASGKAVRRGGSLSSLSGGDDMAYMEYRKPAIKKSKKEVHPL 729 (732)
T ss_pred HHHHHHHHHHhCcccccchhccccchhccccccccccccccccceeccccHhhhcCCCCceeEEeecccccccccccCcc
Confidence 99999999999999999877766652211 245789999999999999999999998753 5999
Q ss_pred hhh
Q psy11640 547 FKK 549 (552)
Q Consensus 547 ~~~ 549 (552)
|||
T Consensus 730 ~~~ 732 (732)
T TIGR00603 730 FKK 732 (732)
T ss_pred cCC
Confidence 986
No 3
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-49 Score=419.55 Aligned_cols=363 Identities=31% Similarity=0.485 Sum_probs=311.6
Q ss_pred chhhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEE
Q psy11640 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICR 85 (552)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~ 85 (552)
..+.=|+++.+.-.+--.. .++.++|||||+|||++|+.++.....++|||||+.+|+.||++.+.+++..+ ..++.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~ 112 (442)
T COG1061 36 ELRPYQEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLN-DEIGI 112 (442)
T ss_pred CCcHHHHHHHHHHHhhccc--CCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCc-cccce
Confidence 3555667777666554333 78999999999999999999999999999999999999999999999888643 46888
Q ss_pred EecCcccCCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhh
Q psy11640 86 FTSEAKDKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRA 165 (552)
Q Consensus 86 ~~g~~~~~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~ 165 (552)
++|+.++... ..|+|+||+++.... .+..+....|++||+|
T Consensus 113 ~~~~~~~~~~-~~i~vat~qtl~~~~--------~l~~~~~~~~~liI~D------------------------------ 153 (442)
T COG1061 113 YGGGEKELEP-AKVTVATVQTLARRQ--------LLDEFLGNEFGLIIFD------------------------------ 153 (442)
T ss_pred ecCceeccCC-CcEEEEEhHHHhhhh--------hhhhhcccccCEEEEE------------------------------
Confidence 8888766432 579999999997531 3344545689999999
Q ss_pred hhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccc-eeeecce
Q psy11640 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHC-KLGLTAT 244 (552)
Q Consensus 166 ~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~-~lgLTAT 244 (552)
||||.++..|+.+...+.+++ +||||||
T Consensus 154 ---------------------------------------------------E~Hh~~a~~~~~~~~~~~~~~~~LGLTAT 182 (442)
T COG1061 154 ---------------------------------------------------EVHHLPAPSYRRILELLSAAYPRLGLTAT 182 (442)
T ss_pred ---------------------------------------------------ccccCCcHHHHHHHHhhhcccceeeeccC
Confidence 888889999999999999888 9999999
Q ss_pred ecccc-cchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhh---------------hhH
Q psy11640 245 LLRED-DKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKR---------------LLL 308 (552)
Q Consensus 245 p~r~d-~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~---------------~~~ 308 (552)
|.|.| +....++.++||.+|+.++.++++.|+++|+.+..++++++.++...|........ ...
T Consensus 183 p~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (442)
T COG1061 183 PEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRI 262 (442)
T ss_pred ceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999 78999999999999999999999999999999999999999888777765443322 445
Q ss_pred HhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHcCCc----eEeCCCCHHHHHHHHHhhccCCCeeEEEEeC
Q psy11640 309 YVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKP----YIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384 (552)
Q Consensus 309 ~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~~~----~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~ 384 (552)
...++.+...+..++..+. ++.+++||+.++.+++.++..|..+ .++|.++..||..+++.|+. +++++||+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~-g~~~~lv~~~ 340 (442)
T COG1061 263 AIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRT-GGIKVLVTVK 340 (442)
T ss_pred hhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHc-CCCCEEEEee
Confidence 5666778888999998886 7889999999999999999999777 99999999999999999997 6799999999
Q ss_pred ccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeE
Q psy11640 385 VADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKV 464 (552)
Q Consensus 385 v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v 464 (552)
+++||+|+|+++++|+++ +++|+.+|+||+||++|+.+++ +...+++|.++..++.++.++..|..+...+|+.+.+
T Consensus 341 vl~EGvDiP~~~~~i~~~-~t~S~~~~~Q~lGR~LR~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 417 (442)
T COG1061 341 VLDEGVDIPDADVLIILR-PTGSRRLFIQRLGRGLRPAEGK--EDTLALDYSLVPDDLGEEDIARRRRLFLIRKGYTYRL 417 (442)
T ss_pred eccceecCCCCcEEEEeC-CCCcHHHHHHHhhhhccCCCCC--CceEEEEEEeecCcccccchhhhhhhhHHhccchhhh
Confidence 999999999999999999 5999999999999999976655 3446999999999999999999888877888877655
Q ss_pred ee
Q psy11640 465 IT 466 (552)
Q Consensus 465 ~~ 466 (552)
.+
T Consensus 418 ~~ 419 (442)
T COG1061 418 LT 419 (442)
T ss_pred hh
Confidence 44
No 4
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.7e-42 Score=371.49 Aligned_cols=340 Identities=16% Similarity=0.222 Sum_probs=263.7
Q ss_pred hhccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEE-EEecCcccCCCCCcEEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMIC-RFTSEAKDKPMGCGILV 101 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~-~~~g~~~~~~~~~~IvI 101 (552)
.+..++++|||+|||+++..++. ....++||||||++|+.||.++|.+|...+...+. ++.|..+. ...+|+|
T Consensus 129 ~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~--~~~~I~V 206 (501)
T PHA02558 129 NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD--TDAPIVV 206 (501)
T ss_pred cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC--CCCCEEE
Confidence 35689999999999998876543 22348999999999999999999999865544554 44444332 3578999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcccc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVA 181 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~ 181 (552)
+|++++.... ..++ .++++||+||||+
T Consensus 207 aT~qsl~~~~---------~~~~--~~~~~iIvDEaH~------------------------------------------ 233 (501)
T PHA02558 207 STWQSAVKQP---------KEWF--DQFGMVIVDECHL------------------------------------------ 233 (501)
T ss_pred eeHHHHhhch---------hhhc--cccCEEEEEchhc------------------------------------------
Confidence 9999885421 1233 6899999995554
Q ss_pred CCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhhhhhhhc
Q psy11640 182 PNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLNFLIG 260 (552)
Q Consensus 182 ~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~L~~lig 260 (552)
..+..+..++..+ ++.+++||||||.+.+.....+..++|
T Consensus 234 ---------------------------------------~~~~~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG 274 (501)
T PHA02558 234 ---------------------------------------FTGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFG 274 (501)
T ss_pred ---------------------------------------ccchhHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhC
Confidence 4445566677666 477899999999765554555677899
Q ss_pred ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccH
Q psy11640 261 PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNV 340 (552)
Q Consensus 261 ~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~ 340 (552)
|..+..+..++++.|++.++.+..+.+..++.....+....-.........++.+..++..++......+.++|||+.++
T Consensus 275 ~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~ 354 (501)
T PHA02558 275 DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYV 354 (501)
T ss_pred CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEH
Confidence 99999999999999999999888777766654322111000011122234556677777777766656788999999999
Q ss_pred HHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-CccccccCCCCCCEEEEeccCCCChhhHHHH
Q psy11640 341 FALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEAQR 414 (552)
Q Consensus 341 ~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr 414 (552)
++++.|++.| ++..+||+++..+|..+++.|+. ++..+||+| +++++|+|+|++++||+++ ++.|..+++||
T Consensus 355 ~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~~-p~~s~~~~~Qr 432 (501)
T PHA02558 355 EHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFAH-PSKSKIIVLQS 432 (501)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEec-CCcchhhhhhh
Confidence 9999999998 46789999999999999999995 788999998 9999999999999999888 79999999999
Q ss_pred hhhccccCCCCCCCceeEEEEEEecCCch----------------hhHHHHHHHHHHHHcCCCeeEee
Q psy11640 415 LGRILRAKKGAIAEEYNAFFYTLVSQDTM----------------EMSYSRKRQRFLINQGYSYKVIT 466 (552)
Q Consensus 415 ~GRi~R~~~~k~~~~~~v~vy~lvs~~t~----------------e~~~~~~r~~~l~~~g~~~~v~~ 466 (552)
+||++|.+++|. .+.||++++.-.+ ..+.+..|.+.+.++++.+.++.
T Consensus 433 iGR~~R~~~~K~----~~~i~D~vD~~~~~~~~~~~~~~~~~~~~~~~h~~~r~~~y~~~~~~~~~~~ 496 (501)
T PHA02558 433 IGRVLRKHGSKS----IATVWDIIDDLSVKPKSANAKKKYVHLNYALKHALERIKIYNEEKFNYEIKK 496 (501)
T ss_pred hhccccCCCCCc----eEEEEEeecccccccccccccchhhhhhHHHHHHHHHHHHHhhccCceEEEE
Confidence 999999999876 7999999987332 35667788888999988886664
No 5
>KOG0385|consensus
Probab=100.00 E-value=2.5e-41 Score=355.72 Aligned_cols=327 Identities=18% Similarity=0.305 Sum_probs=252.5
Q ss_pred cCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---------C
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---------P 94 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---------~ 94 (552)
++.-=-+|+|||+++|+++.. ..+|.||+||.++| .+|.+||.+|+ |...+.+|.|+..++ .
T Consensus 189 gILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~ 265 (971)
T KOG0385|consen 189 GILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFT--PSLNVVVYHGDKEERAALRRDIMLP 265 (971)
T ss_pred cEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhC--CCcceEEEeCCHHHHHHHHHHhhcc
Confidence 344456899999999998863 35799999998866 67999999999 778999999987553 2
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+||||++... ..+.|....|.++|+|||||...
T Consensus 266 ~~fdV~iTsYEi~i~----------dk~~lk~~~W~ylvIDEaHRiKN-------------------------------- 303 (971)
T KOG0385|consen 266 GRFDVCITSYEIAIK----------DKSFLKKFNWRYLVIDEAHRIKN-------------------------------- 303 (971)
T ss_pred CCCceEeehHHHHHh----------hHHHHhcCCceEEEechhhhhcc--------------------------------
Confidence 467999999998865 34678888999999999988432
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccc--h
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDK--I 252 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~--~ 252 (552)
..+...+.+..+....+|.+||||++++-. +
T Consensus 304 -----------------------------------------------~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELW 336 (971)
T KOG0385|consen 304 -----------------------------------------------EKSKLSKILREFKTDNRLLLTGTPLQNNLHELW 336 (971)
T ss_pred -----------------------------------------------hhhHHHHHHHHhcccceeEeeCCcccccHHHHH
Confidence 112233477888999999999999998533 5
Q ss_pred hhhhhhhccccccc-----CH---------HHHHH------------------cCCCcceEEEEEEcCCCHHHHHHHHhh
Q psy11640 253 ADLNFLIGPKLYEA-----NW---------LELQK------------------RGFIARVQCAEVWCPMSPEFYREYLVC 300 (552)
Q Consensus 253 ~~L~~lig~~~~~~-----~~---------~el~~------------------~g~l~~~~~~~v~~~l~~~~~~~y~~~ 300 (552)
..|++++ |-+|.. +| .+++. ...++|..-+.++++|+.-+.+-|-..
T Consensus 337 aLLnFll-PdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~i 415 (971)
T KOG0385|consen 337 ALLNFLL-PDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAI 415 (971)
T ss_pred HHHHhhc-hhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHH
Confidence 5565554 333321 00 01100 123677777889999998765555331
Q ss_pred hh------------h-hh-------hhH----------------------HhcCchhHHHHHHHHHHHhhcCCeEEEEec
Q psy11640 301 KT------------S-KR-------LLL----------------------YVMNPNKYRATQYLIAYHERRGDKTIVFSD 338 (552)
Q Consensus 301 ~~------------~-~~-------~~~----------------------~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~ 338 (552)
.. . .+ .+. .+.+++|+.+|..||..+...|+|||||++
T Consensus 416 L~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQ 495 (971)
T KOG0385|consen 416 LMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQ 495 (971)
T ss_pred HHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHH
Confidence 10 0 00 111 134556999999999999999999999999
Q ss_pred cHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCC--eeEEEEeCccccccCCCCCCEEEEeccCCCChhhH
Q psy11640 339 NVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPK--VNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQE 411 (552)
Q Consensus 339 ~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~--~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~ 411 (552)
.+.+++.|..++ .+.+|+|+++.+||.+.++.|+..++ +-+|++|.+||.||||..||+||+||| .|||...
T Consensus 496 mt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDS-DWNPQ~D 574 (971)
T KOG0385|consen 496 MTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDS-DWNPQVD 574 (971)
T ss_pred HHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecC-CCCchhh
Confidence 999999999887 46789999999999999999997552 334455899999999999999999997 9999999
Q ss_pred HHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHH
Q psy11640 412 AQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455 (552)
Q Consensus 412 ~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l 455 (552)
.|++.|+||+||.| +|.||+||+.+|+|+.+.++-...|
T Consensus 575 LQAmDRaHRIGQ~K-----~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKK-----PVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred hHHHHHHHhhCCcC-----ceEEEEEeccchHHHHHHHHHHHHh
Confidence 99999999999977 6999999999999999987654443
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=5.3e-40 Score=371.92 Aligned_cols=326 Identities=14% Similarity=0.195 Sum_probs=244.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC--------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-------- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-------- 93 (552)
..+++.-.+|+|||+++++++... .+|+|||||.+ ++.||.+||.+|+ |...+..++|+...+
T Consensus 189 ~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~--p~l~v~~~~G~~~eR~~~~~~~~ 265 (1033)
T PLN03142 189 INGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFC--PVLRAVKFHGNPEERAHQREELL 265 (1033)
T ss_pred CCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHC--CCCceEEEeCCHHHHHHHHHHHh
Confidence 456777889999999999987632 36899999975 7899999999998 556788888875321
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCC
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPD 172 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~ 172 (552)
....+|+||||+++.. ....|....|++||+||||+...
T Consensus 266 ~~~~~dVvITSYe~l~~----------e~~~L~k~~W~~VIvDEAHrIKN------------------------------ 305 (1033)
T PLN03142 266 VAGKFDVCVTSFEMAIK----------EKTALKRFSWRYIIIDEAHRIKN------------------------------ 305 (1033)
T ss_pred cccCCCcceecHHHHHH----------HHHHhccCCCCEEEEcCccccCC------------------------------
Confidence 2357899999998854 23456678999999999887432
Q ss_pred CCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccc-
Q psy11640 173 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDK- 251 (552)
Q Consensus 173 ~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~- 251 (552)
+.+...+++..+.+.++|+|||||+++.-.
T Consensus 306 -------------------------------------------------~~Sklskalr~L~a~~RLLLTGTPlqNnl~E 336 (1033)
T PLN03142 306 -------------------------------------------------ENSLLSKTMRLFSTNYRLLITGTPLQNNLHE 336 (1033)
T ss_pred -------------------------------------------------HHHHHHHHHHHhhcCcEEEEecCCCCCCHHH
Confidence 112223356667788999999999987422
Q ss_pred -hhhhhhhhcccccc----------------------------------cCHHHHHHcCCCcceEEEEEEcCCCHHHHHH
Q psy11640 252 -IADLNFLIGPKLYE----------------------------------ANWLELQKRGFIARVQCAEVWCPMSPEFYRE 296 (552)
Q Consensus 252 -~~~L~~lig~~~~~----------------------------------~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~ 296 (552)
+..|+ ++.|..+. ....++ ...+++.....++|+|++.+...
T Consensus 337 LwsLL~-FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV--~~~LPpK~e~iv~v~LS~~Qk~l 413 (1033)
T PLN03142 337 LWALLN-FLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETILKVGMSQMQKQY 413 (1033)
T ss_pred HHHHHh-cCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHH--hhhCCCceeEEEeeCCCHHHHHH
Confidence 22222 22232221 111111 12356666777899999987665
Q ss_pred HHhhhh-----------hh-------hhhHH----------------------hcCchhHHHHHHHHHHHhhcCCeEEEE
Q psy11640 297 YLVCKT-----------SK-------RLLLY----------------------VMNPNKYRATQYLIAYHERRGDKTIVF 336 (552)
Q Consensus 297 y~~~~~-----------~~-------~~~~~----------------------~~~~~K~~~l~~Ll~~~~~~g~kvIVF 336 (552)
|..... .. ..... ..+++|+.+|..|+......|+|+|||
T Consensus 414 Y~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIF 493 (1033)
T PLN03142 414 YKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIF 493 (1033)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEee
Confidence 543211 00 00111 123568999999999888889999999
Q ss_pred eccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCC--eeEEEEeCccccccCCCCCCEEEEeccCCCChh
Q psy11640 337 SDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPK--VNTIFVSKVADTSFDLPEANVLIQISSHGGSRR 409 (552)
Q Consensus 337 ~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~--~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~ 409 (552)
|+++.+++.|...| ++..|+|+++..+|+.+++.|+..+. +.+|++|++||+||||+.|++||+|| ++|||.
T Consensus 494 SQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD-~dWNP~ 572 (1033)
T PLN03142 494 SQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYD-SDWNPQ 572 (1033)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeC-CCCChH
Confidence 99999999999987 45679999999999999999985332 34566789999999999999999999 599999
Q ss_pred hHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHH
Q psy11640 410 QEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454 (552)
Q Consensus 410 q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~ 454 (552)
.+.|++||++|.||.+ +|+||+|++.+|+|+.+..+..+.
T Consensus 573 ~d~QAidRaHRIGQkk-----~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 573 VDLQAQDRAHRIGQKK-----EVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred HHHHHHHHhhhcCCCc-----eEEEEEEEeCCcHHHHHHHHHHHH
Confidence 9999999999999976 699999999999999998754433
No 7
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-39 Score=329.91 Aligned_cols=330 Identities=18% Similarity=0.206 Sum_probs=226.2
Q ss_pred hhhccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMG 96 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~ 96 (552)
..+..++|||||+|||++|+..+.. .++.+|+|+||+.||.|+...|.+++++|+..|..++|..... ...
T Consensus 28 l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~ 107 (542)
T COG1111 28 LFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK 107 (542)
T ss_pred hhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh
Confidence 3457999999999999999988762 3458999999999999999999999999999999999986431 256
Q ss_pred CcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCC
Q psy11640 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 176 (552)
Q Consensus 97 ~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r 176 (552)
..|+|+|+|.+.+..+.. .+...++.++|+|||||+..+...
T Consensus 108 ~kVfvaTPQvveNDl~~G--------rid~~dv~~lifDEAHRAvGnyAY------------------------------ 149 (542)
T COG1111 108 KKVFVATPQVVENDLKAG--------RIDLDDVSLLIFDEAHRAVGNYAY------------------------------ 149 (542)
T ss_pred CCEEEeccHHHHhHHhcC--------ccChHHceEEEechhhhccCcchH------------------------------
Confidence 899999999997653322 233478999999999997642211
Q ss_pred CccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhh
Q psy11640 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLN 256 (552)
Q Consensus 177 ~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~ 256 (552)
-|+ -+..+..-..+..|||||||-.....+....
T Consensus 150 -----------------------v~V-----------------------a~~y~~~~k~~~ilgLTASPGs~~ekI~eV~ 183 (542)
T COG1111 150 -----------------------VFV-----------------------AKEYLRSAKNPLILGLTASPGSDLEKIQEVV 183 (542)
T ss_pred -----------------------HHH-----------------------HHHHHHhccCceEEEEecCCCCCHHHHHHHH
Confidence 000 0112233335679999999975544444333
Q ss_pred hhhcc--cccc---------------------------------------cCHHHHHHcCCCcceEEEEE---------E
Q psy11640 257 FLIGP--KLYE---------------------------------------ANWLELQKRGFIARVQCAEV---------W 286 (552)
Q Consensus 257 ~lig~--~~~~---------------------------------------~~~~el~~~g~l~~~~~~~v---------~ 286 (552)
.-+|- ..+. ..+..|.+.|++....-... .
T Consensus 184 ~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~ 263 (542)
T COG1111 184 ENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIR 263 (542)
T ss_pred HhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHH
Confidence 22221 0000 01112222333322110000 0
Q ss_pred ----cCCCHH---------------------------HHHHHHhhhh-------h------------hhh---h----HH
Q psy11640 287 ----CPMSPE---------------------------FYREYLVCKT-------S------------KRL---L----LY 309 (552)
Q Consensus 287 ----~~l~~~---------------------------~~~~y~~~~~-------~------------~~~---~----~~ 309 (552)
...... ....|+.... . .+. . ..
T Consensus 264 ~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~ 343 (542)
T COG1111 264 LIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADES 343 (542)
T ss_pred HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccc
Confidence 000000 0011111000 0 000 0 00
Q ss_pred hcCchhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHcC-----Cc-eEeC--------CCCHHHHHHHHHhhcc
Q psy11640 310 VMNPNKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKMN-----KP-YIYG--------PTSQSERIQILQNFKL 373 (552)
Q Consensus 310 ~~~~~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L~-----~~-~i~G--------~~~~~eR~~il~~F~~ 373 (552)
....+|++.+.+|++... ..+.++|||++++++++.+...|+ +. .+.| +|+|.++.+++++|+.
T Consensus 344 ~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~ 423 (542)
T COG1111 344 GVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK 423 (542)
T ss_pred cCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc
Confidence 112358888888887665 556799999999999999999992 22 3333 5999999999999995
Q ss_pred CCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHH
Q psy11640 374 NPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449 (552)
Q Consensus 374 ~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~ 449 (552)
|+++|||+|++|+||||+|++|.||+|+ +..|+..++||.||+||...| .||-|++.||.++.|+.
T Consensus 424 -Ge~nVLVaTSVgEEGLDIp~vDlVifYE-pvpSeIR~IQR~GRTGR~r~G--------rv~vLvt~gtrdeayy~ 489 (542)
T COG1111 424 -GEYNVLVATSVGEEGLDIPEVDLVIFYE-PVPSEIRSIQRKGRTGRKRKG--------RVVVLVTEGTRDEAYYY 489 (542)
T ss_pred -CCceEEEEcccccccCCCCcccEEEEec-CCcHHHHHHHhhCccccCCCC--------eEEEEEecCchHHHHHH
Confidence 9999999999999999999999999999 689999999999999997664 48999999998886654
No 8
>KOG0387|consensus
Probab=100.00 E-value=5.3e-39 Score=339.92 Aligned_cols=324 Identities=18% Similarity=0.296 Sum_probs=244.0
Q ss_pred cCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc-----------
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD----------- 92 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~----------- 92 (552)
.++-=-+|+|||++.++.++. .-+|+|||||.. ++.||.+||.+|. |..+|.+++|....
T Consensus 227 GILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~ 303 (923)
T KOG0387|consen 227 GILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTWW--PPFRVFILHGTGSGARYDASHSSHK 303 (923)
T ss_pred CeecccccCccchhHHHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHhC--cceEEEEEecCCcccccccchhhhh
Confidence 344456899999998887753 247999999965 8899999999998 67889998886641
Q ss_pred --C------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhh
Q psy11640 93 --K------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYR 164 (552)
Q Consensus 93 --~------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~ 164 (552)
. .....|+||||+.+... -+.+....|+++|+||||+...
T Consensus 304 ~~~~L~r~~~~~~~ilitty~~~r~~----------~d~l~~~~W~y~ILDEGH~IrN---------------------- 351 (923)
T KOG0387|consen 304 KDKLLIRKVATDGGILITTYDGFRIQ----------GDDLLGILWDYVILDEGHRIRN---------------------- 351 (923)
T ss_pred hhhhheeeecccCcEEEEehhhhccc----------CcccccccccEEEecCcccccC----------------------
Confidence 1 13568999999988542 1335568999999999987321
Q ss_pred hhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecce
Q psy11640 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTAT 244 (552)
Q Consensus 165 ~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTAT 244 (552)
|.+........+.+..|++||||
T Consensus 352 ---------------------------------------------------------pns~islackki~T~~RiILSGT 374 (923)
T KOG0387|consen 352 ---------------------------------------------------------PNSKISLACKKIRTVHRIILSGT 374 (923)
T ss_pred ---------------------------------------------------------CccHHHHHHHhccccceEEeeCc
Confidence 22222335566788999999999
Q ss_pred ecccccc-hhhhhhhhccc------ccccCH---------------------------HHHH-----------HcC-CCc
Q psy11640 245 LLREDDK-IADLNFLIGPK------LYEANW---------------------------LELQ-----------KRG-FIA 278 (552)
Q Consensus 245 p~r~d~~-~~~L~~lig~~------~~~~~~---------------------------~el~-----------~~g-~l~ 278 (552)
|++|.-. ...|+.++.|- +|..++ .+++ -.+ .++
T Consensus 375 PiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp 454 (923)
T KOG0387|consen 375 PIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLP 454 (923)
T ss_pred cccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCC
Confidence 9987432 22333333321 111111 1111 013 455
Q ss_pred ceEEEEEEcCCCHHHHHHHHhhhhh---hh--------------hhHHh-----------------------cCchhHHH
Q psy11640 279 RVQCAEVWCPMSPEFYREYLVCKTS---KR--------------LLLYV-----------------------MNPNKYRA 318 (552)
Q Consensus 279 ~~~~~~v~~~l~~~~~~~y~~~~~~---~~--------------~~~~~-----------------------~~~~K~~~ 318 (552)
.-.-..+||.|++.+++.|..-... .. ....| ..+.|+++
T Consensus 455 ~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~v 534 (923)
T KOG0387|consen 455 KKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKV 534 (923)
T ss_pred CccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHH
Confidence 5566679999999887766552211 00 01111 12359999
Q ss_pred HHHHHHHHhhcCCeEEEEeccHHHHHHHHHHcC------CceEeCCCCHHHHHHHHHhhccCCCeeEEEE-eCccccccC
Q psy11640 319 TQYLIAYHERRGDKTIVFSDNVFALKHYAVKMN------KPYIYGPTSQSERIQILQNFKLNPKVNTIFV-SKVADTSFD 391 (552)
Q Consensus 319 l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~-T~v~~~GlD 391 (552)
+..|+......|+++|+|++++.+++.|..+|. +..++|.|+...|+.++++|+++..+.|+++ |+|||.|+|
T Consensus 535 l~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlN 614 (923)
T KOG0387|consen 535 LAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLN 614 (923)
T ss_pred HHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccc
Confidence 999999988999999999999999999999882 4578999999999999999998778888776 599999999
Q ss_pred CCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHH
Q psy11640 392 LPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR 451 (552)
Q Consensus 392 lp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r 451 (552)
|+.||.||+|| |.|||....|+.-|++|.||.+ .|.||+|++.+|+||.++.+.
T Consensus 615 LTgAnRVIIfD-PdWNPStD~QAreRawRiGQkk-----dV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 615 LTGANRVIIFD-PDWNPSTDNQARERAWRIGQKK-----DVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred cccCceEEEEC-CCCCCccchHHHHHHHhhcCcc-----ceEEEEEecCCcHHHHHHHHH
Confidence 99999999999 7999999999999999999976 599999999999999998754
No 9
>KOG0389|consensus
Probab=100.00 E-value=5e-38 Score=332.08 Aligned_cols=330 Identities=20% Similarity=0.300 Sum_probs=251.4
Q ss_pred CeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC----------C
Q psy11640 31 KKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP----------M 95 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~----------~ 95 (552)
++-=-+|+|||+++|+.++. ..+|-|||||+++| ++|.+||.+|. |...|..|+|...++. .
T Consensus 422 ILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~ 498 (941)
T KOG0389|consen 422 ILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWC--PSLKVEPYYGSQDERRELRERIKKNKD 498 (941)
T ss_pred eehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhC--CceEEEeccCcHHHHHHHHHHHhccCC
Confidence 44456899999999998764 35799999999865 67999999999 7789999999875431 3
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+||||++.... .....+|+..+|+++|+||||-.
T Consensus 499 ~ydVllTTY~la~~~-------kdDRsflk~~~~n~viyDEgHmL----------------------------------- 536 (941)
T KOG0389|consen 499 DYDVLLTTYNLAASS-------KDDRSFLKNQKFNYVIYDEGHML----------------------------------- 536 (941)
T ss_pred CccEEEEEeecccCC-------hHHHHHHHhccccEEEecchhhh-----------------------------------
Confidence 689999999988753 23556788899999999988742
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccc--hh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDK--IA 253 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~--~~ 253 (552)
.+..+..|+. +..+++..||.|||||++++.+ +.
T Consensus 537 -------------------------------------------KN~~SeRy~~-LM~I~An~RlLLTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 537 -------------------------------------------KNRTSERYKH-LMSINANFRLLLTGTPLQNNLKELIS 572 (941)
T ss_pred -------------------------------------------hccchHHHHH-hccccccceEEeeCCcccccHHHHHH
Confidence 2233445553 3457899999999999998654 33
Q ss_pred hhhhhhcccccccCHHHHH-----------------------H------------------cCCCcceEEEEEEcCCCHH
Q psy11640 254 DLNFLIGPKLYEANWLELQ-----------------------K------------------RGFIARVQCAEVWCPMSPE 292 (552)
Q Consensus 254 ~L~~lig~~~~~~~~~el~-----------------------~------------------~g~l~~~~~~~v~~~l~~~ 292 (552)
.|. ++-|.+|.....++- . -+.|+|-.-...+|+|+..
T Consensus 573 LL~-FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~ 651 (941)
T KOG0389|consen 573 LLA-FVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEK 651 (941)
T ss_pred HHH-HHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchH
Confidence 333 333555544322210 0 1334454445567899887
Q ss_pred HHHHHHhhhh--------------hh------hh----------------------------------------------
Q psy11640 293 FYREYLVCKT--------------SK------RL---------------------------------------------- 306 (552)
Q Consensus 293 ~~~~y~~~~~--------------~~------~~---------------------------------------------- 306 (552)
+...|...-. .. +.
T Consensus 652 Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~ 731 (941)
T KOG0389|consen 652 QKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEV 731 (941)
T ss_pred HHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHh
Confidence 6554433100 00 00
Q ss_pred -------hH---------------HhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCC
Q psy11640 307 -------LL---------------YVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPT 359 (552)
Q Consensus 307 -------~~---------------~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~ 359 (552)
.+ ..+.++|++.|..||......|+|||||++++.+++.|...| +..+++|+|
T Consensus 732 msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsT 811 (941)
T KOG0389|consen 732 MSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGST 811 (941)
T ss_pred hhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCc
Confidence 00 023456999999999999899999999999999999999888 346799999
Q ss_pred CHHHHHHHHHhhccCCCeeEEEE-eCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEe
Q psy11640 360 SQSERIQILQNFKLNPKVNTIFV-SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLV 438 (552)
Q Consensus 360 ~~~eR~~il~~F~~~g~~~vLv~-T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lv 438 (552)
...+|+.+++.|..+.++.|+++ |++||.||||+.||+||++| ..-||-...|+..|+||.||.| +|.||+||
T Consensus 812 qV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD-~dFNP~dD~QAEDRcHRvGQtk-----pVtV~rLI 885 (941)
T KOG0389|consen 812 QVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD-IDFNPYDDKQAEDRCHRVGQTK-----PVTVYRLI 885 (941)
T ss_pred cchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee-cCCCCcccchhHHHHHhhCCcc-----eeEEEEEE
Confidence 99999999999998778887666 69999999999999999999 5889999999999999999977 59999999
Q ss_pred cCCchhhHHHHHHHHHHH
Q psy11640 439 SQDTMEMSYSRKRQRFLI 456 (552)
Q Consensus 439 s~~t~e~~~~~~r~~~l~ 456 (552)
+++|+||.|.+.-++.|.
T Consensus 886 tk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 886 TKSTIEEGILRLAKTKLA 903 (941)
T ss_pred ecCcHHHHHHHHHHHhhh
Confidence 999999999886665553
No 10
>KOG0392|consensus
Probab=100.00 E-value=5.2e-37 Score=335.46 Aligned_cols=325 Identities=17% Similarity=0.292 Sum_probs=243.3
Q ss_pred hhccCeecCCCCchhHHHHHHHHh------------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT------------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK- 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~- 93 (552)
+=+++.+=-+|+|||+|++.+++. ...|.|||||++ |+..|..|+.+|++. ..|..|.|...++
T Consensus 994 ~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~~kf~pf--L~v~~yvg~p~~r~ 1070 (1549)
T KOG0392|consen 994 KLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEVKKFFPF--LKVLQYVGPPAERR 1070 (1549)
T ss_pred cccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHHHHhcch--hhhhhhcCChHHHH
Confidence 456788889999999999998861 235799999975 999999999999954 6778888876443
Q ss_pred -----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 94 -----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 94 -----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
...++|+||+|+.+.+ ..+++....|.++|+||||=...
T Consensus 1071 ~lR~q~~~~~iiVtSYDv~Rn----------D~d~l~~~~wNYcVLDEGHVikN-------------------------- 1114 (1549)
T KOG0392|consen 1071 ELRDQYKNANIIVTSYDVVRN----------DVDYLIKIDWNYCVLDEGHVIKN-------------------------- 1114 (1549)
T ss_pred HHHhhccccceEEeeHHHHHH----------HHHHHHhcccceEEecCcceecc--------------------------
Confidence 2568999999998865 45677788999999998764221
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceeccc
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRE 248 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~ 248 (552)
..... .+..+.+.+.+||.|||||++|
T Consensus 1115 ----------------------------------------------------~ktkl-~kavkqL~a~hRLILSGTPIQN 1141 (1549)
T KOG0392|consen 1115 ----------------------------------------------------SKTKL-TKAVKQLRANHRLILSGTPIQN 1141 (1549)
T ss_pred ----------------------------------------------------hHHHH-HHHHHHHhhcceEEeeCCCccc
Confidence 11222 2356678899999999999998
Q ss_pred ccc-hhhhhhhh-----cc-ccccc----------C----HHHHHHc-------------------------CCCcceEE
Q psy11640 249 DDK-IADLNFLI-----GP-KLYEA----------N----WLELQKR-------------------------GFIARVQC 282 (552)
Q Consensus 249 d~~-~~~L~~li-----g~-~~~~~----------~----~~el~~~-------------------------g~l~~~~~ 282 (552)
.-. ...|+.++ |+ +.|.. + -.|. +. .-++|..+
T Consensus 1142 nvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~-EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKII 1220 (1549)
T KOG0392|consen 1142 NVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQ-EAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKII 1220 (1549)
T ss_pred CHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhh
Confidence 533 22233322 22 11111 1 1111 01 12455556
Q ss_pred EEEEcCCCHHHHHHHHhhhhh----------------h-------hhh--------------------------------
Q psy11640 283 AEVWCPMSPEFYREYLVCKTS----------------K-------RLL-------------------------------- 307 (552)
Q Consensus 283 ~~v~~~l~~~~~~~y~~~~~~----------------~-------~~~-------------------------------- 307 (552)
...+|+|+|-+.+-|..-..+ . +.+
T Consensus 1221 QDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~ 1300 (1549)
T KOG0392|consen 1221 QDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFN 1300 (1549)
T ss_pred hheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhh
Confidence 668899998765544331110 0 000
Q ss_pred ---HHhcCchhHHHHHHHHHHHh--------------hcCCeEEEEeccHHHHHHHHHHc------CC--ceEeCCCCHH
Q psy11640 308 ---LYVMNPNKYRATQYLIAYHE--------------RRGDKTIVFSDNVFALKHYAVKM------NK--PYIYGPTSQS 362 (552)
Q Consensus 308 ---~~~~~~~K~~~l~~Ll~~~~--------------~~g~kvIVF~~~~~~~~~l~~~L------~~--~~i~G~~~~~ 362 (552)
....+..|+.+|.+||.... -.++|+||||+...+++.+..-| .+ .+++|+.++.
T Consensus 1301 ~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~ 1380 (1549)
T KOG0392|consen 1301 SSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPG 1380 (1549)
T ss_pred hhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcH
Confidence 01234559999999986542 14679999999999999988877 23 4799999999
Q ss_pred HHHHHHHhhccCCCeeEEEEe-CccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 363 ERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 363 eR~~il~~F~~~g~~~vLv~T-~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+|++++++|++++.++||+.| .|||.|+||++||+||+++ |.|||....|++.||||.||.+ .|.||+||+.|
T Consensus 1381 ~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvE-HDWNPMrDLQAMDRAHRIGQKr-----vVNVyRlItrG 1454 (1549)
T KOG0392|consen 1381 DRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVE-HDWNPMRDLQAMDRAHRIGQKR-----VVNVYRLITRG 1454 (1549)
T ss_pred HHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEe-cCCCchhhHHHHHHHHhhcCce-----eeeeeeehhcc
Confidence 999999999998899999985 9999999999999999999 9999999999999999999966 69999999999
Q ss_pred chhhHHHHH
Q psy11640 442 TMEMSYSRK 450 (552)
Q Consensus 442 t~e~~~~~~ 450 (552)
|.||++...
T Consensus 1455 TLEEKVMgL 1463 (1549)
T KOG0392|consen 1455 TLEEKVMGL 1463 (1549)
T ss_pred cHHHHHhhH
Confidence 999998764
No 11
>KOG0384|consensus
Probab=100.00 E-value=1.2e-36 Score=334.01 Aligned_cols=360 Identities=17% Similarity=0.245 Sum_probs=258.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC-------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP------- 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~------- 94 (552)
+-|+.-=-+|+|||++.++.+.. ..+|.|||||.+.+ ..|.++|..|+. ..+.+|+|+...+.
T Consensus 390 ~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~~---mn~i~y~g~~~sr~~i~~ye~ 465 (1373)
T KOG0384|consen 390 NNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWTD---MNVIVYHGNLESRQLIRQYEF 465 (1373)
T ss_pred ccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHhh---hceeeeecchhHHHHHHHHHh
Confidence 34555667999999999998763 56899999998865 569999999995 46788888764320
Q ss_pred --------CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhh
Q psy11640 95 --------MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQ 166 (552)
Q Consensus 95 --------~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 166 (552)
...+++||||.++.. ....|....|.++++||||+...
T Consensus 466 ~~~~~~~~lkf~~lltTye~~Lk----------Dk~~L~~i~w~~~~vDeahrLkN------------------------ 511 (1373)
T KOG0384|consen 466 YHSSNTKKLKFNALLTTYEIVLK----------DKAELSKIPWRYLLVDEAHRLKN------------------------ 511 (1373)
T ss_pred eecCCccccccceeehhhHHHhc----------cHhhhccCCcceeeecHHhhcCc------------------------
Confidence 136899999998865 35667788999999999887321
Q ss_pred hhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceec
Q psy11640 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLL 246 (552)
Q Consensus 167 ~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~ 246 (552)
..+..|. .+..+...++|.+|+||.
T Consensus 512 ------------------------------------------------------~~~~l~~-~l~~f~~~~rllitgTPl 536 (1373)
T KOG0384|consen 512 ------------------------------------------------------DESKLYE-SLNQFKMNHRLLITGTPL 536 (1373)
T ss_pred ------------------------------------------------------hHHHHHH-HHHHhcccceeeecCCCc
Confidence 1233444 366677889999999999
Q ss_pred ccccc--hhhhhhhhccccccc--------------CHHHHHH--------------cCCCcceEEEEEEcCCCHHHHHH
Q psy11640 247 REDDK--IADLNFLIGPKLYEA--------------NWLELQK--------------RGFIARVQCAEVWCPMSPEFYRE 296 (552)
Q Consensus 247 r~d~~--~~~L~~lig~~~~~~--------------~~~el~~--------------~g~l~~~~~~~v~~~l~~~~~~~ 296 (552)
+|.-. +..|+++. |..|.. .+..|.. ..-+++-.-..+.+.|++-+.+.
T Consensus 537 QNsikEL~sLl~Fl~-P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~y 615 (1373)
T KOG0384|consen 537 QNSLKELWSLLHFLM-PGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQY 615 (1373)
T ss_pred cccHHHHHHHhcccC-CCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHH
Confidence 87432 33333333 322211 0111211 12233333344666777654333
Q ss_pred HHhhhhh--------------------------------------------------hhhhHHhcCchhHHHHHHHHHHH
Q psy11640 297 YLVCKTS--------------------------------------------------KRLLLYVMNPNKYRATQYLIAYH 326 (552)
Q Consensus 297 y~~~~~~--------------------------------------------------~~~~~~~~~~~K~~~l~~Ll~~~ 326 (552)
|-..... .......++++|+.+|..||..+
T Consensus 616 Yk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rL 695 (1373)
T KOG0384|consen 616 YKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRL 695 (1373)
T ss_pred HHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHH
Confidence 3221100 01223345677888889999888
Q ss_pred hhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCC--CeeEEEEeCccccccCCCCCCEEE
Q psy11640 327 ERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNP--KVNTIFVSKVADTSFDLPEANVLI 399 (552)
Q Consensus 327 ~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g--~~~vLv~T~v~~~GlDlp~a~~VI 399 (552)
...|+|||||++.+.+++.|+++| ...+|+|+++.+-|+..|+.|+..+ .+-+|++|.+||.||||..||+||
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 889999999999999999999999 3457999999999999999998644 444566799999999999999999
Q ss_pred EeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEeecccccccccCCCC
Q psy11640 400 QISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHY 479 (552)
Q Consensus 400 ~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~~~~~~~~~~~~~~ 479 (552)
++|| .|||...+|++.|+||+||.+ .|.||+||+.+|+|+.+..+-.+.| ++.+-||+.+..-....+-.-
T Consensus 776 IFDS-DWNPQNDLQAqARaHRIGQkk-----~VnVYRLVTk~TvEeEilERAk~Km---vLD~aVIQ~m~t~~~~s~~~~ 846 (1373)
T KOG0384|consen 776 IFDS-DWNPQNDLQAQARAHRIGQKK-----HVNVYRLVTKNTVEEEILERAKLKM---VLDHAVIQRMDTKGKTSKSNP 846 (1373)
T ss_pred EeCC-CCCcchHHHHHHHHHhhcccc-----eEEEEEEecCCchHHHHHHHHHHHh---hhHHHHHHhhccccccCCCCC
Confidence 9997 999999999999999999976 6999999999999999988766655 445566665443111122222
Q ss_pred CChHHHHHHHH
Q psy11640 480 STRDEQGQLLQ 490 (552)
Q Consensus 480 ~~~~~~~~ll~ 490 (552)
.+.+|-.++|.
T Consensus 847 f~K~ELsaILK 857 (1373)
T KOG0384|consen 847 FSKEELSAILK 857 (1373)
T ss_pred CCHHHHHHHHH
Confidence 34667667775
No 12
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.4e-34 Score=325.04 Aligned_cols=326 Identities=13% Similarity=0.154 Sum_probs=222.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCc--------ccC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA--------KDK 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~--------~~~ 93 (552)
..|.++.-.+|+|||++|++++.. ..+|+|||||+ .|+.||..|+.+|++++ ..++.++. ...
T Consensus 169 ~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~---~~i~~~~~~~~~~~~~~~p 244 (956)
T PRK04914 169 APRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLR---FSLFDEERYAEAQHDADNP 244 (956)
T ss_pred CCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC---eEEEcCcchhhhcccccCc
Confidence 356777789999999999988753 23699999997 59999999999888753 34444332 112
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCC
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 173 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 173 (552)
+...+++|+||+++.... ...+.+....|++||+||||+......
T Consensus 245 f~~~~~vI~S~~~l~~~~-------~~~~~l~~~~wdlvIvDEAH~lk~~~~---------------------------- 289 (956)
T PRK04914 245 FETEQLVICSLDFLRRNK-------QRLEQALAAEWDLLVVDEAHHLVWSEE---------------------------- 289 (956)
T ss_pred cccCcEEEEEHHHhhhCH-------HHHHHHhhcCCCEEEEechhhhccCCC----------------------------
Confidence 245789999999986421 123445567999999999998542100
Q ss_pred CCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh--hccceeeecceecccccc
Q psy11640 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV--QSHCKLGLTATLLREDDK 251 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~--~~~~~lgLTATp~r~d~~ 251 (552)
.++..|+.+ ..+ .++++|+|||||.+++..
T Consensus 290 -----------------------------------------------~~s~~y~~v-~~La~~~~~~LLLTATP~q~~~~ 321 (956)
T PRK04914 290 -----------------------------------------------APSREYQVV-EQLAEVIPGVLLLTATPEQLGQE 321 (956)
T ss_pred -----------------------------------------------CcCHHHHHH-HHHhhccCCEEEEEcCcccCCcH
Confidence 112223322 222 356899999999985432
Q ss_pred -hhhhhhhhcccccccCHHHH-----------------------------------------------------------
Q psy11640 252 -IADLNFLIGPKLYEANWLEL----------------------------------------------------------- 271 (552)
Q Consensus 252 -~~~L~~lig~~~~~~~~~el----------------------------------------------------------- 271 (552)
.-.+..++.|..|.. +..+
T Consensus 322 e~falL~lLdP~~f~~-~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~ 400 (956)
T PRK04914 322 SHFARLRLLDPDRFHD-YEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQ 400 (956)
T ss_pred HHHHhhhhhCCCcCCC-HHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHH
Confidence 112223333433211 0000
Q ss_pred --HH----c-C--------------CCcceEEEEEEcCCCHHHHHHHHhhhh---------hhhhh-------HHhcCch
Q psy11640 272 --QK----R-G--------------FIARVQCAEVWCPMSPEFYREYLVCKT---------SKRLL-------LYVMNPN 314 (552)
Q Consensus 272 --~~----~-g--------------~l~~~~~~~v~~~l~~~~~~~y~~~~~---------~~~~~-------~~~~~~~ 314 (552)
++ . | -++......+..+++++ +........ ..... .......
T Consensus 401 ~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~-y~~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~ 479 (956)
T PRK04914 401 ELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQ-YQTAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDP 479 (956)
T ss_pred HHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHH-HHHHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCH
Confidence 00 0 0 00111122233444332 221111000 00000 0112345
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----C--CceEeCCCCHHHHHHHHHhhccC-CCeeEEEEeCccc
Q psy11640 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----N--KPYIYGPTSQSERIQILQNFKLN-PKVNTIFVSKVAD 387 (552)
Q Consensus 315 K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~--~~~i~G~~~~~eR~~il~~F~~~-g~~~vLv~T~v~~ 387 (552)
|+..|..+++.+ .+.|+||||+++.+++.|+..| | +..+||+|++.+|.++++.|+++ +.++|||+|++++
T Consensus 480 Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 480 RVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 788888888765 5889999999999999999988 2 45699999999999999999963 3799999999999
Q ss_pred cccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHH
Q psy11640 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449 (552)
Q Consensus 388 ~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~ 449 (552)
+|+|++.|++||+|| .||||..|+||+||++|.|+.+ +|.+|.++..+|+++.+..
T Consensus 558 eGlNlq~a~~VInfD-lP~nP~~~eQRIGR~~RiGQ~~-----~V~i~~~~~~~t~~e~i~~ 613 (956)
T PRK04914 558 EGRNFQFASHLVLFD-LPFNPDLLEQRIGRLDRIGQKH-----DIQIHVPYLEGTAQERLFR 613 (956)
T ss_pred cCCCcccccEEEEec-CCCCHHHHHHHhcccccCCCCc-----eEEEEEccCCCCHHHHHHH
Confidence 999999999999999 6999999999999999999965 6999999999999998876
No 13
>KOG0390|consensus
Probab=100.00 E-value=4.6e-34 Score=310.28 Aligned_cols=340 Identities=20% Similarity=0.248 Sum_probs=238.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-----C-----CcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc-C---
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-----R-----KRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-K--- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-----~-----~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~-~--- 93 (552)
..|+..=.+|+|||++.|++++.. . .++|||||. .|+..|++||.+|..........+.|..++ +
T Consensus 264 ~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~ 342 (776)
T KOG0390|consen 264 GGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKL 342 (776)
T ss_pred CceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhh
Confidence 345555678999999999999742 3 679999996 599999999999997423444555565543 1
Q ss_pred ---------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhh
Q psy11640 94 ---------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYR 164 (552)
Q Consensus 94 ---------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~ 164 (552)
.-...|.+.+|+++. ..++.+....++++|+||||+...
T Consensus 343 ~sil~~~~~~~~~~vli~sye~~~----------~~~~~il~~~~glLVcDEGHrlkN---------------------- 390 (776)
T KOG0390|consen 343 KSILFLGYKQFTTPVLIISYETAS----------DYCRKILLIRPGLLVCDEGHRLKN---------------------- 390 (776)
T ss_pred HHHHHhhhhheeEEEEeccHHHHH----------HHHHHHhcCCCCeEEECCCCCccc----------------------
Confidence 123467777787663 356777788999999999998432
Q ss_pred hhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecce
Q psy11640 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTAT 244 (552)
Q Consensus 165 ~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTAT 244 (552)
..+...+++..+..++|+.||||
T Consensus 391 ---------------------------------------------------------~~s~~~kaL~~l~t~rRVLLSGT 413 (776)
T KOG0390|consen 391 ---------------------------------------------------------SDSLTLKALSSLKTPRRVLLTGT 413 (776)
T ss_pred ---------------------------------------------------------hhhHHHHHHHhcCCCceEEeeCC
Confidence 12333447778889999999999
Q ss_pred ecccccchhhhhhh---hccccc----------c------cC-------------HHHH--------------HHcCCCc
Q psy11640 245 LLREDDKIADLNFL---IGPKLY----------E------AN-------------WLEL--------------QKRGFIA 278 (552)
Q Consensus 245 p~r~d~~~~~L~~l---ig~~~~----------~------~~-------------~~el--------------~~~g~l~ 278 (552)
|++||-. +++++ ..|... + .+ ..+| +-..+|+
T Consensus 414 p~QNdl~--EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP 491 (776)
T KOG0390|consen 414 PIQNDLK--EYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLP 491 (776)
T ss_pred cccccHH--HHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCC
Confidence 9988633 11111 111110 0 00 1111 1135677
Q ss_pred ceEEEEEEcCCCHHHHHHHHhhhhh--hh------------hhHHhc---------------------------------
Q psy11640 279 RVQCAEVWCPMSPEFYREYLVCKTS--KR------------LLLYVM--------------------------------- 311 (552)
Q Consensus 279 ~~~~~~v~~~l~~~~~~~y~~~~~~--~~------------~~~~~~--------------------------------- 311 (552)
+.....+.|.+++-+...|-..... .. .-..+.
T Consensus 492 ~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 571 (776)
T KOG0390|consen 492 GKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDA 571 (776)
T ss_pred CceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhccccccccc
Confidence 7777788999888765554332111 00 000000
Q ss_pred -C---chhHHHHHHHHHHH-hhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCe-eEE
Q psy11640 312 -N---PNKYRATQYLIAYH-ERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKV-NTI 380 (552)
Q Consensus 312 -~---~~K~~~l~~Ll~~~-~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~-~vL 380 (552)
. ..|+..|..++... +....++.+.++++.+++.+...+ | +..+||+|+..+|+.+++.|++.+.. .|+
T Consensus 572 ~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vf 651 (776)
T KOG0390|consen 572 GDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVF 651 (776)
T ss_pred ccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEE
Confidence 0 23677777777433 223346666666777777776666 3 56799999999999999999975444 677
Q ss_pred EE-eCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcC
Q psy11640 381 FV-SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQG 459 (552)
Q Consensus 381 v~-T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g 459 (552)
++ |+|||+||||.+|+.||++| +.|||....|+++||+|.||.+ .|++|+|++.||+||.++. +...+++
T Consensus 652 LlSsKAgg~GinLiGAsRlil~D-~dWNPa~d~QAmaR~~RdGQKk-----~v~iYrLlatGtiEEk~~q---rq~~K~~ 722 (776)
T KOG0390|consen 652 LLSSKAGGEGLNLIGASRLILFD-PDWNPAVDQQAMARAWRDGQKK-----PVYIYRLLATGTIEEKIYQ---RQTHKEG 722 (776)
T ss_pred EEecccccCceeecccceEEEeC-CCCCchhHHHHHHHhccCCCcc-----eEEEEEeecCCCchHHHHH---HHHHhhh
Confidence 66 59999999999999999999 6999999999999999999966 6999999999999999884 4567788
Q ss_pred CCeeEeecc
Q psy11640 460 YSYKVITKL 468 (552)
Q Consensus 460 ~~~~v~~~~ 468 (552)
.+-.|+..-
T Consensus 723 lS~~v~~~~ 731 (776)
T KOG0390|consen 723 LSSMVFDEE 731 (776)
T ss_pred hhheEEecc
Confidence 887777643
No 14
>KOG0386|consensus
Probab=100.00 E-value=8.3e-36 Score=322.01 Aligned_cols=358 Identities=18% Similarity=0.255 Sum_probs=259.2
Q ss_pred CCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC--------CCCCcEE
Q psy11640 35 RPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--------PMGCGIL 100 (552)
Q Consensus 35 pTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~--------~~~~~Iv 100 (552)
-+|+|||+++|++++. ..+|.||+||+++|++ |..||.+|. |......|.|....+ ....+|+
T Consensus 421 EMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWa--PSv~~i~YkGtp~~R~~l~~qir~gKFnVL 497 (1157)
T KOG0386|consen 421 EMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWA--PSVQKIQYKGTPQQRSGLTKQQRHGKFNVL 497 (1157)
T ss_pred hcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccc--cceeeeeeeCCHHHHhhHHHHHhcccceee
Confidence 4899999999999873 4689999999999986 999999998 556677788876442 1567999
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
+|||..+.. ....|....|.+|||||+|+...-
T Consensus 498 lTtyEyiik----------dk~lLsKI~W~yMIIDEGHRmKNa------------------------------------- 530 (1157)
T KOG0386|consen 498 LTTYEYIIK----------DKALLSKISWKYMIIDEGHRMKNA------------------------------------- 530 (1157)
T ss_pred eeeHHHhcC----------CHHHHhccCCcceeecccccccch-------------------------------------
Confidence 999998865 235677889999999999985431
Q ss_pred cCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccc--hhhhhhh
Q psy11640 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDK--IADLNFL 258 (552)
Q Consensus 181 ~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~--~~~L~~l 258 (552)
+| ..-..+.....+.+||.|||||+++... +..|+++
T Consensus 531 ------------------------------------~~-----KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFl 569 (1157)
T KOG0386|consen 531 ------------------------------------IC-----KLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFL 569 (1157)
T ss_pred ------------------------------------hh-----HHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHh
Confidence 11 1111122355688999999999998533 5666665
Q ss_pred hcccccccCHHHHHHcCCCcceE--------------------------------------------EEEEEcCCCHHHH
Q psy11640 259 IGPKLYEANWLELQKRGFIARVQ--------------------------------------------CAEVWCPMSPEFY 294 (552)
Q Consensus 259 ig~~~~~~~~~el~~~g~l~~~~--------------------------------------------~~~v~~~l~~~~~ 294 (552)
+ |.+|... ...+.+|-+|+. -..+.|.|+.-+.
T Consensus 570 L-P~IFnS~--~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq 646 (1157)
T KOG0386|consen 570 L-PNIFNSC--KAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQ 646 (1157)
T ss_pred c-cchhhhH--hHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhH
Confidence 5 3333210 000111111111 1124455554332
Q ss_pred HHHHhhhh-----------h----------hhhhHHh-----------------------cCchhHHHHHHHHHHHhhcC
Q psy11640 295 REYLVCKT-----------S----------KRLLLYV-----------------------MNPNKYRATQYLIAYHERRG 330 (552)
Q Consensus 295 ~~y~~~~~-----------~----------~~~~~~~-----------------------~~~~K~~~l~~Ll~~~~~~g 330 (552)
..|-.... . ......| ...+|+++|..++.++...|
T Consensus 647 ~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatg 726 (1157)
T KOG0386|consen 647 SLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATG 726 (1157)
T ss_pred hhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcC
Confidence 22221110 0 0001111 12359999999999999999
Q ss_pred CeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCC-CeeEEE-EeCccccccCCCCCCEEEEecc
Q psy11640 331 DKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNP-KVNTIF-VSKVADTSFDLPEANVLIQISS 403 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g-~~~vLv-~T~v~~~GlDlp~a~~VI~~~~ 403 (552)
++++.||+.+...+.+..+| .+..++|.+..++|-.+++.|+..+ .+.+++ +|.+||.|+|++.|++||++|+
T Consensus 727 HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifds 806 (1157)
T KOG0386|consen 727 HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDS 806 (1157)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecC
Confidence 99999999999999999998 4577999999999999999999633 333333 4799999999999999999995
Q ss_pred CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEeecccccccccCCCCCChH
Q psy11640 404 HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRD 483 (552)
Q Consensus 404 ~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~ 483 (552)
.|||.++.|+..|++|+|+.+ .|.|+++++.+++||.+.+..+.. .+.+-+||+. |+.+. -+|.+
T Consensus 807 -dwnp~~d~qaqdrahrigq~~-----evRv~rl~tv~sveE~il~~a~~K---l~~d~kviqa--g~fdn----~st~~ 871 (1157)
T KOG0386|consen 807 -DWNPHQDLQAQDRAHRIGQKK-----EVRVLRLITVNSVEEKILAEAFYK---LDVDGKVIQA--GKFDN----KSTAE 871 (1157)
T ss_pred -CCCchhHHHHHHHHHHhhchh-----heeeeeeehhhHHHHHHHHHHHHh---cCchHhhhhc--ccccC----CCcHH
Confidence 999999999999999999976 599999999999999998753333 3555577774 33332 45799
Q ss_pred HHHHHHHHHHhccccchh
Q psy11640 484 EQGQLLQQVLAASETDAD 501 (552)
Q Consensus 484 ~~~~ll~~~~~~~~~~~~ 501 (552)
+|+.+|++++...+++.+
T Consensus 872 eR~~~Le~~l~~~~~~~~ 889 (1157)
T KOG0386|consen 872 EREMFLEQLLEMEGDEEE 889 (1157)
T ss_pred HHHHHHHHHHhCCCcccc
Confidence 999999999988776444
No 15
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.5e-33 Score=319.26 Aligned_cols=326 Identities=18% Similarity=0.225 Sum_probs=220.1
Q ss_pred ccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCCCcE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMGCGI 99 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~~~I 99 (552)
..++++|||+|||++++.++.. .++++|||||+++|+.||.+.++++++++...+..++|+.... ...++|
T Consensus 31 n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~~~i 110 (773)
T PRK13766 31 NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKAKV 110 (773)
T ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhCCCE
Confidence 6899999999999998877653 3679999999999999999999999887666788888875431 145789
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|+|++.+.+... ...+...+|++||+||||+.......
T Consensus 111 iv~T~~~l~~~l~--------~~~~~~~~~~liVvDEaH~~~~~~~~--------------------------------- 149 (773)
T PRK13766 111 IVATPQVIENDLI--------AGRISLEDVSLLIFDEAHRAVGNYAY--------------------------------- 149 (773)
T ss_pred EEECHHHHHHHHH--------cCCCChhhCcEEEEECCccccccccH---------------------------------
Confidence 9999998854211 11222367999999999985421100
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLI 259 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~li 259 (552)
....+........+.++||||||.........+...+
T Consensus 150 -------------------------------------------~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L 186 (773)
T PRK13766 150 -------------------------------------------VYIAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENL 186 (773)
T ss_pred -------------------------------------------HHHHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhC
Confidence 0000111122235679999999976544433322221
Q ss_pred c-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHH-------------------------------------------
Q psy11640 260 G-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYR------------------------------------------- 295 (552)
Q Consensus 260 g-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~------------------------------------------- 295 (552)
+ ..+.-.+..+..-..++.+.....+.++++++...
T Consensus 187 ~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (773)
T PRK13766 187 GIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQ 266 (773)
T ss_pred CceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHH
Confidence 1 11110000000012233333333333333332110
Q ss_pred --------------------------------------HHHhhhh-hh-------------------hh----hHHhcCc
Q psy11640 296 --------------------------------------EYLVCKT-SK-------------------RL----LLYVMNP 313 (552)
Q Consensus 296 --------------------------------------~y~~~~~-~~-------------------~~----~~~~~~~ 313 (552)
.|+.... .. +. .......
T Consensus 267 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (773)
T PRK13766 267 EIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEH 346 (773)
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCC
Confidence 0000000 00 00 0001123
Q ss_pred hhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHc-----CCceEeCC--------CCHHHHHHHHHhhccCCCee
Q psy11640 314 NKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGP--------TSQSERIQILQNFKLNPKVN 378 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~--------~~~~eR~~il~~F~~~g~~~ 378 (552)
.|+..|.++|.... ..+.++||||+++.+++.|...| .+..++|. +++.+|.+++++|+. |+++
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~ 425 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFN 425 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCC
Confidence 58888888887654 47789999999999999999988 34567776 899999999999996 8999
Q ss_pred EEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHH
Q psy11640 379 TIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS 448 (552)
Q Consensus 379 vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~ 448 (552)
+||+|+++++|+|+|.+++||+|+ +++|+.+++||+||+||.+++ .+|.|+..+|.|+.++
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd-~~~s~~r~iQR~GR~gR~~~~--------~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYE-PVPSEIRSIQRKGRTGRQEEG--------RVVVLIAKGTRDEAYY 486 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeC-CCCCHHHHHHHhcccCcCCCC--------EEEEEEeCCChHHHHH
Confidence 999999999999999999999999 699999999999999998763 4788999999988654
No 16
>KOG0388|consensus
Probab=100.00 E-value=5.9e-32 Score=281.87 Aligned_cols=130 Identities=13% Similarity=0.234 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEE-EeCccc
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIF-VSKVAD 387 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv-~T~v~~ 387 (552)
+|+..|.+||..+.+.|+++|+|.+.+.+++.+..+| +...++|+....+|.+++.+|+. +++-|++ +|.+||
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGG 1106 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCc
Confidence 3999999999999999999999999999999999998 34678999999999999999997 5666554 479999
Q ss_pred cccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHH
Q psy11640 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRK 450 (552)
Q Consensus 388 ~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~ 450 (552)
.||||++|++||+|++ .|||....|++.|+||.||.+ .|.||+|++.+|+||++..+
T Consensus 1107 LGINLTAADTViFYdS-DWNPT~D~QAMDRAHRLGQTr-----dvtvyrl~~rgTvEEk~l~r 1163 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDS-DWNPTADQQAMDRAHRLGQTR-----DVTVYRLITRGTVEEKVLER 1163 (1185)
T ss_pred ccccccccceEEEecC-CCCcchhhHHHHHHHhccCcc-----ceeeeeecccccHHHHHHHH
Confidence 9999999999999997 999999999999999999987 59999999999999988654
No 17
>KOG0331|consensus
Probab=100.00 E-value=1.4e-31 Score=280.18 Aligned_cols=293 Identities=18% Similarity=0.207 Sum_probs=203.7
Q ss_pred hccCeecCCCCchhHHHHHHHH-hc-----------CCcEEEEecCchhHHHHHHHHHhhhCCCCC-cEEEEecCcccC-
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC-TV-----------RKRALVLCNSGVSVEQWKHQFKLWSTADDS-MICRFTSEAKDK- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~-~~-----------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~-~I~~~~g~~~~~- 93 (552)
+-.++.+.||+|||+.++..+- ++ ...+|||+||++|+.|..+++..|...... .++++.|..+..
T Consensus 129 rD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q 208 (519)
T KOG0331|consen 129 RDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQ 208 (519)
T ss_pred CceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHH
Confidence 4567889999999999876542 11 124999999999999999999999875443 445555554432
Q ss_pred ----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhc
Q psy11640 94 ----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 169 (552)
Q Consensus 94 ----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l 169 (552)
..+.+|+|+|+..|....+. ..+.-..+.++|+|||.++.. .
T Consensus 209 ~~~l~~gvdiviaTPGRl~d~le~--------g~~~l~~v~ylVLDEADrMld--------------m------------ 254 (519)
T KOG0331|consen 209 LRDLERGVDVVIATPGRLIDLLEE--------GSLNLSRVTYLVLDEADRMLD--------------M------------ 254 (519)
T ss_pred HHHHhcCCcEEEeCChHHHHHHHc--------CCccccceeEEEeccHHhhhc--------------c------------
Confidence 15689999999977421111 112225788999998744211 0
Q ss_pred CCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hcc-ceeeecceecc
Q psy11640 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSH-CKLGLTATLLR 247 (552)
Q Consensus 170 ~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~-~~lgLTATp~r 247 (552)
--.+..++++..+ ++. ..|..|||-..
T Consensus 255 ---------------------------------------------------GFe~qI~~Il~~i~~~~rQtlm~saTwp~ 283 (519)
T KOG0331|consen 255 ---------------------------------------------------GFEPQIRKILSQIPRPDRQTLMFSATWPK 283 (519)
T ss_pred ---------------------------------------------------ccHHHHHHHHHhcCCCcccEEEEeeeccH
Confidence 0123445677777 333 36778888422
Q ss_pred cccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHh
Q psy11640 248 EDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE 327 (552)
Q Consensus 248 ~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~ 327 (552)
+ . ...+..++..+..+.+-. .. +........++...+...+|...|..+|..+.
T Consensus 284 ~------v--------------~~lA~~fl~~~~~i~ig~--~~----~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~ 337 (519)
T KOG0331|consen 284 E------V--------------RQLAEDFLNNPIQINVGN--KK----ELKANHNIRQIVEVCDETAKLRKLGKLLEDIS 337 (519)
T ss_pred H------H--------------HHHHHHHhcCceEEEecc--hh----hhhhhcchhhhhhhcCHHHHHHHHHHHHHHHh
Confidence 1 1 111122222221111110 00 11122223334445556678888888887764
Q ss_pred -hcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEe
Q psy11640 328 -RRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQI 401 (552)
Q Consensus 328 -~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~ 401 (552)
..+.|+||||+++..++.|+..| ++..|||+.++.||..+|+.|++ |++.|||||+++++|||+|++++||+|
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcceEEEcccccccCCCccccEEEeC
Confidence 56679999999999999999988 46689999999999999999996 999999999999999999999999999
Q ss_pred ccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 402 SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 402 ~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
| .|.+...|+||+||.||+++. ...|.|.+.
T Consensus 417 d-fP~~vEdYVHRiGRTGRa~~~-------G~A~tfft~ 447 (519)
T KOG0331|consen 417 D-FPNNVEDYVHRIGRTGRAGKK-------GTAITFFTS 447 (519)
T ss_pred C-CCCCHHHHHhhcCccccCCCC-------ceEEEEEeH
Confidence 9 599999999999999998874 335666654
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-31 Score=292.82 Aligned_cols=305 Identities=19% Similarity=0.235 Sum_probs=201.5
Q ss_pred hccCeecCCCCchhHHHHHHHH-hc----------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC-TV----------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~-~~----------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~--- 93 (552)
+-.++++|||+|||++++.++. .. +..+||||||++|+.|+.+++.+|.......+.++.|+....
T Consensus 168 ~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~ 247 (545)
T PTZ00110 168 RDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI 247 (545)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH
Confidence 4568899999999999876542 11 235899999999999999999998865444555555544221
Q ss_pred ---CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcC
Q psy11640 94 ---PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170 (552)
Q Consensus 94 ---~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~ 170 (552)
....+|+|+|++.|....... .+....+.+||+||||+.... .|
T Consensus 248 ~~l~~~~~IlVaTPgrL~d~l~~~--------~~~l~~v~~lViDEAd~mld~-------------gf------------ 294 (545)
T PTZ00110 248 YALRRGVEILIACPGRLIDFLESN--------VTNLRRVTYLVLDEADRMLDM-------------GF------------ 294 (545)
T ss_pred HHHHcCCCEEEECHHHHHHHHHcC--------CCChhhCcEEEeehHHhhhhc-------------ch------------
Confidence 145799999999774321110 111256899999998863210 00
Q ss_pred CCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccc
Q psy11640 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLRED 249 (552)
Q Consensus 171 ~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d 249 (552)
....+.++..+. ....+++|||....
T Consensus 295 ----------------------------------------------------~~~i~~il~~~~~~~q~l~~SAT~p~~- 321 (545)
T PTZ00110 295 ----------------------------------------------------EPQIRKIVSQIRPDRQTLMWSATWPKE- 321 (545)
T ss_pred ----------------------------------------------------HHHHHHHHHhCCCCCeEEEEEeCCCHH-
Confidence 011233444442 44578999997432
Q ss_pred cchhhh-hhhhc--ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHH
Q psy11640 250 DKIADL-NFLIG--PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYH 326 (552)
Q Consensus 250 ~~~~~L-~~lig--~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~ 326 (552)
...+ ..++. +........++... ... ...........|...|..++...
T Consensus 322 --v~~l~~~l~~~~~v~i~vg~~~l~~~---~~i-----------------------~q~~~~~~~~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 322 --VQSLARDLCKEEPVHVNVGSLDLTAC---HNI-----------------------KQEVFVVEEHEKRGKLKMLLQRI 373 (545)
T ss_pred --HHHHHHHHhccCCEEEEECCCccccC---CCe-----------------------eEEEEEEechhHHHHHHHHHHHh
Confidence 1111 11111 11000000000000 000 00011112234566667777766
Q ss_pred hhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEe
Q psy11640 327 ERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQI 401 (552)
Q Consensus 327 ~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~ 401 (552)
...+.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++||++
T Consensus 374 ~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~ILVaTdv~~rGIDi~~v~~VI~~ 452 (545)
T PTZ00110 374 MRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPIMIATDVASRGLDVKDVKYVINF 452 (545)
T ss_pred cccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcEEEEcchhhcCCCcccCCEEEEe
Confidence 446789999999999999999988 34679999999999999999996 899999999999999999999999999
Q ss_pred ccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHH
Q psy11640 402 SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLIN 457 (552)
Q Consensus 402 ~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~ 457 (552)
+ .|.+...|+||+||+||.+.. ...|.|++.+. ..++..-.+.|.+
T Consensus 453 d-~P~s~~~yvqRiGRtGR~G~~-------G~ai~~~~~~~--~~~~~~l~~~l~~ 498 (545)
T PTZ00110 453 D-FPNQIEDYVHRIGRTGRAGAK-------GASYTFLTPDK--YRLARDLVKVLRE 498 (545)
T ss_pred C-CCCCHHHHHHHhcccccCCCC-------ceEEEEECcch--HHHHHHHHHHHHH
Confidence 9 599999999999999998763 45677887753 3344433444444
No 19
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.98 E-value=3.9e-31 Score=305.20 Aligned_cols=354 Identities=17% Similarity=0.166 Sum_probs=228.6
Q ss_pred chhhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCC
Q psy11640 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADD 80 (552)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~ 80 (552)
..+.||.++.+.-.+--+ +.+++.+++||||+|||++++.++... .+++|||||+.+|+.||.++|..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~-~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIV-EGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHH-hccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 357789888866544322 334678999999999999988877542 36899999999999999999998742111
Q ss_pred CcEE-EE--ec-CcccCCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcc
Q psy11640 81 SMIC-RF--TS-EAKDKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPED 156 (552)
Q Consensus 81 ~~I~-~~--~g-~~~~~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~ 156 (552)
..+. .+ .+ ..........|+|+|++++........ .....+....|++||+|||||+.+........ .-
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~---~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~----~~ 564 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSD---DPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG----EL 564 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccc---cccccCCCCcccEEEEECCCCCCccccccccc----hh
Confidence 1111 11 11 111112357899999998854311110 00011223679999999999964311100000 00
Q ss_pred cccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhcc
Q psy11640 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236 (552)
Q Consensus 157 ~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~ 236 (552)
.| .-+....+.|++++.++. .
T Consensus 565 ~~----------------------------------------------------------~~~~~~~~~yr~iL~yFd-A 585 (1123)
T PRK11448 565 QF----------------------------------------------------------RDQLDYVSKYRRVLDYFD-A 585 (1123)
T ss_pred cc----------------------------------------------------------chhhhHHHHHHHHHhhcC-c
Confidence 00 001112467788888876 4
Q ss_pred ceeeecceecccccchhhhhhhhcccccccCHHHHHHcCCCcc----eEEEEEEc----CCC-HHHHHHHHhh-------
Q psy11640 237 CKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIAR----VQCAEVWC----PMS-PEFYREYLVC------- 300 (552)
Q Consensus 237 ~~lgLTATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~----~~~~~v~~----~l~-~~~~~~y~~~------- 300 (552)
.+|||||||.+. ...+||..+|.+++.++++.|++.+ +.+..... ... .++...|...
T Consensus 586 ~~IGLTATP~r~------t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~ 659 (1123)
T PRK11448 586 VKIGLTATPALH------TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLA 659 (1123)
T ss_pred cEEEEecCCccc------hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhc
Confidence 789999999853 3567788899999999999999983 33322110 001 1111111100
Q ss_pred --hhh-----hhhhHHhcCchhHH-HHHHHHHHHh-hcCCeEEEEeccHHHHHHHHHHcC--------------CceEeC
Q psy11640 301 --KTS-----KRLLLYVMNPNKYR-ATQYLIAYHE-RRGDKTIVFSDNVFALKHYAVKMN--------------KPYIYG 357 (552)
Q Consensus 301 --~~~-----~~~~~~~~~~~K~~-~l~~Ll~~~~-~~g~kvIVF~~~~~~~~~l~~~L~--------------~~~i~G 357 (552)
... ...-....++...+ ++..+++... ..+.|+||||.++.+++.+...|. +..++|
T Consensus 660 ~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg 739 (1123)
T PRK11448 660 TLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITG 739 (1123)
T ss_pred cCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeC
Confidence 000 00001112233333 3445554432 234699999999999998777641 234888
Q ss_pred CCCHHHHHHHHHhhccCCCe-eEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCC--CCCCCceeEEE
Q psy11640 358 PTSQSERIQILQNFKLNPKV-NTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK--GAIAEEYNAFF 434 (552)
Q Consensus 358 ~~~~~eR~~il~~F~~~g~~-~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~--~k~~~~~~v~v 434 (552)
+++ ++.+++++|++ +.. +|+|+++++++|+|+|.+++||+++ ++.|+..|.|++||+.|..+ +|. .+.|
T Consensus 740 ~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~v~~vVf~r-pvkS~~lf~QmIGRgtR~~~~~~K~----~f~I 811 (1123)
T PRK11448 740 SID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPSICNLVFLR-RVRSRILYEQMLGRATRLCPEIGKT----HFRI 811 (1123)
T ss_pred Ccc--chHHHHHHHhC-CCCCeEEEEecccccCCCcccccEEEEec-CCCCHHHHHHHHhhhccCCccCCCc----eEEE
Confidence 886 57889999996 555 6888899999999999999999999 69999999999999999987 565 6889
Q ss_pred EEEecC
Q psy11640 435 YTLVSQ 440 (552)
Q Consensus 435 y~lvs~ 440 (552)
||++..
T Consensus 812 ~D~vg~ 817 (1123)
T PRK11448 812 FDAVDI 817 (1123)
T ss_pred EehHHH
Confidence 998864
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=1.1e-31 Score=286.41 Aligned_cols=288 Identities=18% Similarity=0.225 Sum_probs=194.9
Q ss_pred hccCeecCCCCchhHHHHHHHHh-------------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc--
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-------------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-- 92 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~-- 92 (552)
+--++++|||+|||++++.++.. .+.++||||||++|+.||.+++..+.......+..+.|+...
T Consensus 46 ~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 125 (423)
T PRK04837 46 RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK 125 (423)
T ss_pred CcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH
Confidence 35678899999999998766531 124699999999999999999998876555667777665421
Q ss_pred ----CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 93 ----~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
.....+|+|+|++.|...... ..+...++.++|+||||+... ..|
T Consensus 126 ~~~~l~~~~~IlV~TP~~l~~~l~~--------~~~~l~~v~~lViDEad~l~~-------------~~f---------- 174 (423)
T PRK04837 126 QLKVLESGVDILIGTTGRLIDYAKQ--------NHINLGAIQVVVLDEADRMFD-------------LGF---------- 174 (423)
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHc--------CCcccccccEEEEecHHHHhh-------------ccc----------
Confidence 113579999999977432111 112236789999999886321 000
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh---ccceeeeccee
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ---SHCKLGLTATL 245 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~---~~~~lgLTATp 245 (552)
......++..++ ....+++|||+
T Consensus 175 ------------------------------------------------------~~~i~~i~~~~~~~~~~~~~l~SAT~ 200 (423)
T PRK04837 175 ------------------------------------------------------IKDIRWLFRRMPPANQRLNMLFSATL 200 (423)
T ss_pred ------------------------------------------------------HHHHHHHHHhCCCccceeEEEEeccC
Confidence 001112333332 23357889997
Q ss_pred cccccchhhh-hhhh-cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHH
Q psy11640 246 LREDDKIADL-NFLI-GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLI 323 (552)
Q Consensus 246 ~r~d~~~~~L-~~li-g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll 323 (552)
... ...+ ...+ .|.. ..+... . . ..........+.....|...+..++
T Consensus 201 ~~~---~~~~~~~~~~~p~~-------------------i~v~~~-~-~------~~~~i~~~~~~~~~~~k~~~l~~ll 250 (423)
T PRK04837 201 SYR---VRELAFEHMNNPEY-------------------VEVEPE-Q-K------TGHRIKEELFYPSNEEKMRLLQTLI 250 (423)
T ss_pred CHH---HHHHHHHHCCCCEE-------------------EEEcCC-C-c------CCCceeEEEEeCCHHHHHHHHHHHH
Confidence 421 1111 1111 1111 111000 0 0 0000000011122345667777777
Q ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEE
Q psy11640 324 AYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVL 398 (552)
Q Consensus 324 ~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~V 398 (552)
... ...++||||+++..++.++..| .+..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++|
T Consensus 251 ~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~vLVaTdv~~rGiDip~v~~V 327 (423)
T PRK04837 251 EEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDILVATDVAARGLHIPAVTHV 327 (423)
T ss_pred Hhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcEEEEechhhcCCCccccCEE
Confidence 654 5789999999999999999988 46789999999999999999995 899999999999999999999999
Q ss_pred EEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 399 IQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 399 I~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
|+++ .|.+...|+||+||+||.|+. ...+.|++.+
T Consensus 328 I~~d-~P~s~~~yiqR~GR~gR~G~~-------G~ai~~~~~~ 362 (423)
T PRK04837 328 FNYD-LPDDCEDYVHRIGRTGRAGAS-------GHSISLACEE 362 (423)
T ss_pred EEeC-CCCchhheEeccccccCCCCC-------eeEEEEeCHH
Confidence 9999 699999999999999999873 4467777764
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=5.2e-31 Score=282.22 Aligned_cols=313 Identities=17% Similarity=0.141 Sum_probs=202.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhc----------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV----------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----- 93 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~----------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----- 93 (552)
-.++++|||+|||++++.++... ..++|||+||++|+.|+.+.+..|.......+..++|+....
T Consensus 40 d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~ 119 (434)
T PRK11192 40 DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV 119 (434)
T ss_pred CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH
Confidence 46889999999999987765421 247999999999999999999988765566788888765321
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCC
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPD 172 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~ 172 (552)
....+|+|+|++.|...... ..+....+++||+||||+... ..|
T Consensus 120 l~~~~~IlV~Tp~rl~~~~~~--------~~~~~~~v~~lViDEah~~l~-------------~~~-------------- 164 (434)
T PRK11192 120 FSENQDIVVATPGRLLQYIKE--------ENFDCRAVETLILDEADRMLD-------------MGF-------------- 164 (434)
T ss_pred hcCCCCEEEEChHHHHHHHHc--------CCcCcccCCEEEEECHHHHhC-------------CCc--------------
Confidence 14578999999977432110 112235788999999886321 000
Q ss_pred CCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccc
Q psy11640 173 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDK 251 (552)
Q Consensus 173 ~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~ 251 (552)
...+..+..... ....+++|||+... .
T Consensus 165 --------------------------------------------------~~~~~~i~~~~~~~~q~~~~SAT~~~~--~ 192 (434)
T PRK11192 165 --------------------------------------------------AQDIETIAAETRWRKQTLLFSATLEGD--A 192 (434)
T ss_pred --------------------------------------------------HHHHHHHHHhCccccEEEEEEeecCHH--H
Confidence 011111222222 34568999998531 1
Q ss_pred hhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhH-HhcCchhHHHHHHHHHHHhhcC
Q psy11640 252 IADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLL-YVMNPNKYRATQYLIAYHERRG 330 (552)
Q Consensus 252 ~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~-~~~~~~K~~~l~~Ll~~~~~~g 330 (552)
...+...+.. .+.. +.+........ ....... ......|..++..+++.. ..
T Consensus 193 ~~~~~~~~~~----------------~~~~---i~~~~~~~~~~------~i~~~~~~~~~~~~k~~~l~~l~~~~--~~ 245 (434)
T PRK11192 193 VQDFAERLLN----------------DPVE---VEAEPSRRERK------KIHQWYYRADDLEHKTALLCHLLKQP--EV 245 (434)
T ss_pred HHHHHHHHcc----------------CCEE---EEecCCccccc------CceEEEEEeCCHHHHHHHHHHHHhcC--CC
Confidence 1111111100 0100 00000000000 0000000 011234566666676543 56
Q ss_pred CeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC
Q psy11640 331 DKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG 405 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~ 405 (552)
.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++||+++ .|
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~vLVaTd~~~~GiDip~v~~VI~~d-~p 323 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNVLVATDVAARGIDIDDVSHVINFD-MP 323 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcEEEEccccccCccCCCCCEEEEEC-CC
Confidence 79999999999999999988 35689999999999999999995 8999999999999999999999999999 69
Q ss_pred CChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEeec
Q psy11640 406 GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITK 467 (552)
Q Consensus 406 ~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~~ 467 (552)
.|...|+||+||+||.|.. ...+.|++.. +..+..+-++++ .+.+...+++.
T Consensus 324 ~s~~~yiqr~GR~gR~g~~-------g~ai~l~~~~--d~~~~~~i~~~~-~~~~~~~~~~~ 375 (434)
T PRK11192 324 RSADTYLHRIGRTGRAGRK-------GTAISLVEAH--DHLLLGKIERYI-EEPLKARVIDE 375 (434)
T ss_pred CCHHHHhhcccccccCCCC-------ceEEEEecHH--HHHHHHHHHHHH-hcccccccccc
Confidence 9999999999999998763 3355566542 233333334444 33333344443
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.97 E-value=4.8e-31 Score=283.62 Aligned_cols=288 Identities=19% Similarity=0.188 Sum_probs=192.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC--
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-- 93 (552)
+-.++++|||+|||++++.++... ..++||||||++|+.||.+++..|.......+..+.|+....
T Consensus 39 ~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~ 118 (456)
T PRK10590 39 RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118 (456)
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHH
Confidence 347888999999999987765421 126999999999999999999998765445555566554221
Q ss_pred ----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhc
Q psy11640 94 ----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 169 (552)
Q Consensus 94 ----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l 169 (552)
....+|+|+|++.|...... ..+....+++||+||||+..... |
T Consensus 119 ~~~l~~~~~IiV~TP~rL~~~~~~--------~~~~l~~v~~lViDEah~ll~~~-------------~----------- 166 (456)
T PRK10590 119 MMKLRGGVDVLVATPGRLLDLEHQ--------NAVKLDQVEILVLDEADRMLDMG-------------F----------- 166 (456)
T ss_pred HHHHcCCCcEEEEChHHHHHHHHc--------CCcccccceEEEeecHHHHhccc-------------c-----------
Confidence 14579999999987532111 11223678999999988632100 0
Q ss_pred CCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceeccc
Q psy11640 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLRE 248 (552)
Q Consensus 170 ~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~ 248 (552)
...++.++..++ ....+++|||+...
T Consensus 167 -----------------------------------------------------~~~i~~il~~l~~~~q~l~~SAT~~~~ 193 (456)
T PRK10590 167 -----------------------------------------------------IHDIRRVLAKLPAKRQNLLFSATFSDD 193 (456)
T ss_pred -----------------------------------------------------HHHHHHHHHhCCccCeEEEEeCCCcHH
Confidence 011222344443 33578999997432
Q ss_pred ccchhhhh-hhhcccccccCHHHHHHcCCCcceEEEEEEcCC-CHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHH
Q psy11640 249 DDKIADLN-FLIGPKLYEANWLELQKRGFIARVQCAEVWCPM-SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYH 326 (552)
Q Consensus 249 d~~~~~L~-~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l-~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~ 326 (552)
...+. .++.. +....+.... ..+.... ....+....|..++..++...
T Consensus 194 ---~~~l~~~~~~~------------------~~~i~~~~~~~~~~~i~~---------~~~~~~~~~k~~~l~~l~~~~ 243 (456)
T PRK10590 194 ---IKALAEKLLHN------------------PLEIEVARRNTASEQVTQ---------HVHFVDKKRKRELLSQMIGKG 243 (456)
T ss_pred ---HHHHHHHHcCC------------------CeEEEEecccccccceeE---------EEEEcCHHHHHHHHHHHHHcC
Confidence 11111 11111 1001100000 0000000 000111123444555555543
Q ss_pred hhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEe
Q psy11640 327 ERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQI 401 (552)
Q Consensus 327 ~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~ 401 (552)
...++||||+++..++.++..| .+..+||++++.+|.++++.|++ |+++|||+|+++++|||+|++++||+|
T Consensus 244 --~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 244 --NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred --CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 4579999999999999999988 35679999999999999999996 899999999999999999999999999
Q ss_pred ccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 402 SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 402 ~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+ .|.++..|+||+||+||.+.. ...+.|+..+
T Consensus 321 ~-~P~~~~~yvqR~GRaGR~g~~-------G~ai~l~~~~ 352 (456)
T PRK10590 321 E-LPNVPEDYVHRIGRTGRAAAT-------GEALSLVCVD 352 (456)
T ss_pred C-CCCCHHHhhhhccccccCCCC-------eeEEEEecHH
Confidence 9 699999999999999998873 3456666654
No 23
>KOG1000|consensus
Probab=99.97 E-value=2.8e-30 Score=261.12 Aligned_cols=413 Identities=15% Similarity=0.181 Sum_probs=256.8
Q ss_pred hhhccCeecCCCCchhHHHHHHHH--hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---CCCCcEE
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC--TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---PMGCGIL 100 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~--~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~Iv 100 (552)
+--|+++-=-+|+|||++||+++. +...|.|||||.+ +...|.+++.+|++.- ..|.+..+..... .....|.
T Consensus 213 RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAs-vrftWa~al~r~lps~-~pi~vv~~~~D~~~~~~t~~~v~ 290 (689)
T KOG1000|consen 213 RGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPAS-VRFTWAKALNRFLPSI-HPIFVVDKSSDPLPDVCTSNTVA 290 (689)
T ss_pred cCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHH-HhHHHHHHHHHhcccc-cceEEEecccCCccccccCCeEE
Confidence 344666777899999999998775 4568999999976 6678999999999743 3455555443221 2457899
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
|.+|+++.+ +.+.+....|.++|+||+|....++. .|..-+
T Consensus 291 ivSye~ls~----------l~~~l~~~~~~vvI~DEsH~Lk~skt-----------------------------kr~Ka~ 331 (689)
T KOG1000|consen 291 IVSYEQLSL----------LHDILKKEKYRVVIFDESHMLKDSKT-----------------------------KRTKAA 331 (689)
T ss_pred EEEHHHHHH----------HHHHHhcccceEEEEechhhhhccch-----------------------------hhhhhh
Confidence 999999865 33456566799999999998543332 222212
Q ss_pred cC----CCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHH-HHhhhc-cceeee--cceecccccch
Q psy11640 181 AP----NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRV-LTIVQS-HCKLGL--TATLLREDDKI 252 (552)
Q Consensus 181 ~~----~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~-l~~~~~-~~~lgL--TATp~r~d~~~ 252 (552)
.| ..|+++.++||....+.+.+.+|. -+.+.-...|... ..+... ..+++. ++.. ..
T Consensus 332 ~dllk~akhvILLSGTPavSRP~elytqi~----------avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~t-----nl 396 (689)
T KOG1000|consen 332 TDLLKVAKHVILLSGTPAVSRPSELYTQIR----------AVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCT-----NL 396 (689)
T ss_pred hhHHHHhhheEEecCCcccCCchhhhhhhh----------hhcccccccHHHHHHHhcCccccceeeecCCCC-----CH
Confidence 22 357888888888888777776653 1222111122111 111111 111111 1110 11
Q ss_pred hhhhhhhcc-cccccCHHHHHHcCCCcceE-EEEEEcCCCHHHH-HH-------HHhhhhhhh-----hhHH-hcCchhH
Q psy11640 253 ADLNFLIGP-KLYEANWLELQKRGFIARVQ-CAEVWCPMSPEFY-RE-------YLVCKTSKR-----LLLY-VMNPNKY 316 (552)
Q Consensus 253 ~~L~~lig~-~~~~~~~~el~~~g~l~~~~-~~~v~~~l~~~~~-~~-------y~~~~~~~~-----~~~~-~~~~~K~ 316 (552)
.+|..++.. .+.+..-.++. +-|++.+ .+.+.++-....+ .+ |...+...+ .+.+ ...-.|.
T Consensus 397 ~EL~~lL~k~lMIRRlK~dvL--~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~ 474 (689)
T KOG1000|consen 397 EELAALLFKRLMIRRLKADVL--KQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKA 474 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhccccc
Confidence 222222211 11112122222 2233332 2222232222111 11 111100000 1111 1123466
Q ss_pred HHH-HHHHH---HHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc
Q psy11640 317 RAT-QYLIA---YHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA 386 (552)
Q Consensus 317 ~~l-~~Ll~---~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~ 386 (552)
..+ +.|+. .....+.|++||+++...++.|...+ +-..|+|++++.+|+.+.+.|+.+.++.|.|.+ .++
T Consensus 475 ~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~ 554 (689)
T KOG1000|consen 475 AAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAA 554 (689)
T ss_pred HHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeec
Confidence 544 44444 13367789999999999999999988 345799999999999999999988899998887 999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEee
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVIT 466 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~ 466 (552)
+.||++.++++||+.. .+|||--.+|+-.|+||.||.. .|+||.||+++|++++++..-|+.|.-.+-..---+
T Consensus 555 gvGLt~tAa~~VVFaE-L~wnPgvLlQAEDRaHRiGQks-----sV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~ 628 (689)
T KOG1000|consen 555 GVGLTLTAASVVVFAE-LHWNPGVLLQAEDRAHRIGQKS-----SVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSD 628 (689)
T ss_pred ccceeeeccceEEEEE-ecCCCceEEechhhhhhccccc-----eeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCcc
Confidence 9999999999999999 6999999999999999999965 599999999999999999887777643321111111
Q ss_pred cccccccccCCCCCChHHHHHHHHHHHhccccchhhhh
Q psy11640 467 KLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEER 504 (552)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 504 (552)
.+ .+.+..++.++.+. |..+-+.+++..+++-++++
T Consensus 629 ~~-~~~e~~g~s~~~~a-q~~i~~~~~k~~~~ti~~~e 664 (689)
T KOG1000|consen 629 TF-RTAEKMGLSFNDAA-QPGIAEYLKKTPDTTIDEWE 664 (689)
T ss_pred cc-eeecccceeecCcc-cchHHHHHhhCCCCchhhcc
Confidence 22 22233455555543 34566777777776655544
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.97 E-value=1.2e-30 Score=284.15 Aligned_cols=290 Identities=14% Similarity=0.143 Sum_probs=192.8
Q ss_pred hccCeecCCCCchhHHHHHHHHh-------------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEE-EEecCcccC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-------------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMIC-RFTSEAKDK 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~-~~~g~~~~~ 93 (552)
+-.++++|||+|||++++.++.. .+..+|||+||++|+.|+.++++.+.......+. +++|+....
T Consensus 159 ~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~ 238 (518)
T PLN00206 159 RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQ 238 (518)
T ss_pred CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHH
Confidence 45788899999999998876531 2346999999999999999999988643333333 444443221
Q ss_pred -----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 94 -----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 94 -----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
..+.+|+|+|++.|.....+. .+...++.+||+||||+... ..|
T Consensus 239 q~~~l~~~~~IiV~TPgrL~~~l~~~--------~~~l~~v~~lViDEad~ml~-------------~gf---------- 287 (518)
T PLN00206 239 QLYRIQQGVELIVGTPGRLIDLLSKH--------DIELDNVSVLVLDEVDCMLE-------------RGF---------- 287 (518)
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHcC--------CccchheeEEEeecHHHHhh-------------cch----------
Confidence 245799999999774321111 11225788999999876321 000
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceeccc
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRE 248 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~ 248 (552)
......++..++....+++|||....
T Consensus 288 ------------------------------------------------------~~~i~~i~~~l~~~q~l~~SATl~~~ 313 (518)
T PLN00206 288 ------------------------------------------------------RDQVMQIFQALSQPQVLLFSATVSPE 313 (518)
T ss_pred ------------------------------------------------------HHHHHHHHHhCCCCcEEEEEeeCCHH
Confidence 01122344555667889999998532
Q ss_pred ccchhhhhhhh-c-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHH
Q psy11640 249 DDKIADLNFLI-G-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYH 326 (552)
Q Consensus 249 d~~~~~L~~li-g-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~ 326 (552)
...+...+ . +........ ...........+++ ....|...+.+++...
T Consensus 314 ---v~~l~~~~~~~~~~i~~~~~----~~~~~~v~q~~~~~-----------------------~~~~k~~~l~~~l~~~ 363 (518)
T PLN00206 314 ---VEKFASSLAKDIILISIGNP----NRPNKAVKQLAIWV-----------------------ETKQKKQKLFDILKSK 363 (518)
T ss_pred ---HHHHHHHhCCCCEEEEeCCC----CCCCcceeEEEEec-----------------------cchhHHHHHHHHHHhh
Confidence 11111111 1 110000000 00000000011111 2223444555566544
Q ss_pred hhcCCeEEEEeccHHHHHHHHHHc------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 327 ERRGDKTIVFSDNVFALKHYAVKM------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 327 ~~~g~kvIVF~~~~~~~~~l~~~L------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
.....++||||+++..++.++..| .+..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++||+
T Consensus 364 ~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~ILVaTdvl~rGiDip~v~~VI~ 442 (518)
T PLN00206 364 QHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPVIVATGVLGRGVDLLRVRQVII 442 (518)
T ss_pred cccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCEEEEecHhhccCCcccCCEEEE
Confidence 334568999999999999998877 34579999999999999999996 89999999999999999999999999
Q ss_pred eccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 401 ISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 401 ~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++ .|.+...|+||+||+||.+.. ..++.|++.+
T Consensus 443 ~d-~P~s~~~yihRiGRaGR~g~~-------G~ai~f~~~~ 475 (518)
T PLN00206 443 FD-MPNTIKEYIHQIGRASRMGEK-------GTAIVFVNEE 475 (518)
T ss_pred eC-CCCCHHHHHHhccccccCCCC-------eEEEEEEchh
Confidence 99 699999999999999998863 4566777654
No 25
>KOG0391|consensus
Probab=99.97 E-value=1.3e-30 Score=282.66 Aligned_cols=131 Identities=18% Similarity=0.296 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHcC-----CceEeCCCCHHHHHHHHHhhccCCCeeEEEE-eCcccc
Q psy11640 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMN-----KPYIYGPTSQSERIQILQNFKLNPKVNTIFV-SKVADT 388 (552)
Q Consensus 315 K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~-T~v~~~ 388 (552)
|++.|.-||+.+...|+++|||++.+.+++.|..+|+ +..|+|.++.++|+.++++|+.+..+-|+|+ |..||.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 8999999999888899999999999999999999995 3568999999999999999998888888777 599999
Q ss_pred ccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHH
Q psy11640 389 SFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKR 451 (552)
Q Consensus 389 GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r 451 (552)
||||++||+||+||+ .|||.-..|...|.+|+||.+ +|.||+||+..|+|+.+.++-
T Consensus 1341 GiNLtgADTVvFYDs-DwNPtMDaQAQDrChRIGqtR-----DVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDS-DWNPTMDAQAQDRCHRIGQTR-----DVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred ccccccCceEEEecC-CCCchhhhHHHHHHHhhcCcc-----ceEEEEeeccchHHHHHHhhh
Confidence 999999999999996 999999999999999999987 699999999999999998765
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=5e-31 Score=289.25 Aligned_cols=289 Identities=15% Similarity=0.164 Sum_probs=193.5
Q ss_pred hccCeecCCCCchhHHHHHHHHh-c------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-V------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-~------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~- 93 (552)
+--++.+|||+|||++++.++.. . ..++||||||++|+.|+.+++.+|+......+..++|+....
T Consensus 47 ~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~ 126 (572)
T PRK04537 47 GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK 126 (572)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH
Confidence 34678899999999998876542 1 247999999999999999999998865455677777765321
Q ss_pred -----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 94 -----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 94 -----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
....+|+|+|++.|....... ..+....+++||+||||..... .|
T Consensus 127 q~~~l~~~~dIiV~TP~rL~~~l~~~-------~~~~l~~v~~lViDEAh~lld~-------------gf---------- 176 (572)
T PRK04537 127 QRELLQQGVDVIIATPGRLIDYVKQH-------KVVSLHACEICVLDEADRMFDL-------------GF---------- 176 (572)
T ss_pred HHHHHhCCCCEEEECHHHHHHHHHhc-------cccchhheeeeEecCHHHHhhc-------------ch----------
Confidence 135789999999875321100 0122256789999998763210 00
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh---ccceeeeccee
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ---SHCKLGLTATL 245 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~---~~~~lgLTATp 245 (552)
......++..++ ....+++|||.
T Consensus 177 ------------------------------------------------------~~~i~~il~~lp~~~~~q~ll~SATl 202 (572)
T PRK04537 177 ------------------------------------------------------IKDIRFLLRRMPERGTRQTLLFSATL 202 (572)
T ss_pred ------------------------------------------------------HHHHHHHHHhcccccCceEEEEeCCc
Confidence 001112333333 34578999997
Q ss_pred cccccchhhhhhhh-cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHH
Q psy11640 246 LREDDKIADLNFLI-GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIA 324 (552)
Q Consensus 246 ~r~d~~~~~L~~li-g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~ 324 (552)
... .......++ .|........ ......+ ...........|...+..++.
T Consensus 203 ~~~--v~~l~~~~l~~p~~i~v~~~------~~~~~~i---------------------~q~~~~~~~~~k~~~L~~ll~ 253 (572)
T PRK04537 203 SHR--VLELAYEHMNEPEKLVVETE------TITAARV---------------------RQRIYFPADEEKQTLLLGLLS 253 (572)
T ss_pred cHH--HHHHHHHHhcCCcEEEeccc------cccccce---------------------eEEEEecCHHHHHHHHHHHHh
Confidence 421 111111111 1110000000 0000000 000111122345566666665
Q ss_pred HHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEE
Q psy11640 325 YHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLI 399 (552)
Q Consensus 325 ~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI 399 (552)
.. .+.++||||+++..++.+++.| .+..+||++++.+|.++++.|++ ++++|||+|+++++|||+|++++||
T Consensus 254 ~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~VLVaTdv~arGIDip~V~~VI 330 (572)
T PRK04537 254 RS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEILVATDVAARGLHIDGVKYVY 330 (572)
T ss_pred cc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeEEEEehhhhcCCCccCCCEEE
Confidence 43 6779999999999999999988 46789999999999999999995 8999999999999999999999999
Q ss_pred EeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 400 QISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 400 ~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
+|+ .|.+...|+||+||++|.+.. ...+.|++.
T Consensus 331 nyd-~P~s~~~yvqRiGRaGR~G~~-------G~ai~~~~~ 363 (572)
T PRK04537 331 NYD-LPFDAEDYVHRIGRTARLGEE-------GDAISFACE 363 (572)
T ss_pred EcC-CCCCHHHHhhhhcccccCCCC-------ceEEEEecH
Confidence 999 699999999999999998874 335666665
No 27
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.97 E-value=1.7e-30 Score=280.22 Aligned_cols=287 Identities=17% Similarity=0.206 Sum_probs=196.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~------~ 94 (552)
+--++++|||+|||++++.++... ..++||||||++|+.||.++++.+... +...+..++|+.... .
T Consensus 42 ~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~ 121 (460)
T PRK11776 42 KDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE 121 (460)
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc
Confidence 357888999999999877666431 236999999999999999999987642 345677777764221 2
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+|+|++.+.....+. .+.-.++++||+||||+... ..|
T Consensus 122 ~~~~IvV~Tp~rl~~~l~~~--------~~~l~~l~~lViDEad~~l~-------------~g~---------------- 164 (460)
T PRK11776 122 HGAHIIVGTPGRILDHLRKG--------TLDLDALNTLVLDEADRMLD-------------MGF---------------- 164 (460)
T ss_pred CCCCEEEEChHHHHHHHHcC--------CccHHHCCEEEEECHHHHhC-------------cCc----------------
Confidence 46799999999774321110 11125789999999876321 000
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchh
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIA 253 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~ 253 (552)
......++..++ ....+++|||+... ..
T Consensus 165 ------------------------------------------------~~~l~~i~~~~~~~~q~ll~SAT~~~~---~~ 193 (460)
T PRK11776 165 ------------------------------------------------QDAIDAIIRQAPARRQTLLFSATYPEG---IA 193 (460)
T ss_pred ------------------------------------------------HHHHHHHHHhCCcccEEEEEEecCcHH---HH
Confidence 011122333333 34578999998421 11
Q ss_pred hhh-hhhc-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCC
Q psy11640 254 DLN-FLIG-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD 331 (552)
Q Consensus 254 ~L~-~lig-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~ 331 (552)
.+. .++. |....... ........ .. ...+.+..|+..+..++..+ .+.
T Consensus 194 ~l~~~~~~~~~~i~~~~-----~~~~~~i~--~~---------------------~~~~~~~~k~~~l~~ll~~~--~~~ 243 (460)
T PRK11776 194 AISQRFQRDPVEVKVES-----THDLPAIE--QR---------------------FYEVSPDERLPALQRLLLHH--QPE 243 (460)
T ss_pred HHHHHhcCCCEEEEECc-----CCCCCCee--EE---------------------EEEeCcHHHHHHHHHHHHhc--CCC
Confidence 111 1111 11110000 00000000 00 11112234677777777655 567
Q ss_pred eEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCC
Q psy11640 332 KTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG 406 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~ 406 (552)
++||||+++..++.++..| .+..+||++++.+|..+++.|++ |++++||+|+++++|||+|++++||+++ .|.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~vLVaTdv~~rGiDi~~v~~VI~~d-~p~ 321 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSVLVATDVAARGLDIKALEAVINYE-LAR 321 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcEEEEecccccccchhcCCeEEEec-CCC
Confidence 9999999999999999998 46789999999999999999995 8999999999999999999999999999 699
Q ss_pred ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 407 SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 407 s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++..|+||+||+||.+.. ...|.|++.+
T Consensus 322 ~~~~yiqR~GRtGR~g~~-------G~ai~l~~~~ 349 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSK-------GLALSLVAPE 349 (460)
T ss_pred CHhHhhhhcccccCCCCc-------ceEEEEEchh
Confidence 999999999999998763 4567777764
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=3.4e-30 Score=278.67 Aligned_cols=289 Identities=16% Similarity=0.216 Sum_probs=194.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc--
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-- 92 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~-- 92 (552)
+--++++|||+|||++++..+... ..++|||+||++|+.||.++++.+.......+..++|+...
T Consensus 125 ~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~ 204 (475)
T PRK01297 125 HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDK 204 (475)
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHH
Confidence 456788999999999987665421 24799999999999999999998875444567777776421
Q ss_pred -----CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhh
Q psy11640 93 -----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQM 167 (552)
Q Consensus 93 -----~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ 167 (552)
.....+|+|+|+++|.....+. .+...++++||+||+|.....
T Consensus 205 ~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--------~~~l~~l~~lViDEah~l~~~------------------------ 252 (475)
T PRK01297 205 QLKQLEARFCDILVATPGRLLDFNQRG--------EVHLDMVEVMVLDEADRMLDM------------------------ 252 (475)
T ss_pred HHHHHhCCCCCEEEECHHHHHHHHHcC--------CcccccCceEEechHHHHHhc------------------------
Confidence 1135789999999884321110 111257889999998763210
Q ss_pred hcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh---ccceeeecce
Q psy11640 168 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ---SHCKLGLTAT 244 (552)
Q Consensus 168 ~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~---~~~~lgLTAT 244 (552)
. -...+++++..+. ....+++|||
T Consensus 253 -------------------------------------------------~----~~~~l~~i~~~~~~~~~~q~i~~SAT 279 (475)
T PRK01297 253 -------------------------------------------------G----FIPQVRQIIRQTPRKEERQTLLFSAT 279 (475)
T ss_pred -------------------------------------------------c----cHHHHHHHHHhCCCCCCceEEEEEee
Confidence 0 0011222333332 3468999999
Q ss_pred ecccccchhhhhhh-hcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHH
Q psy11640 245 LLREDDKIADLNFL-IGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLI 323 (552)
Q Consensus 245 p~r~d~~~~~L~~l-ig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll 323 (552)
.... .......+ ..|.......... . ..........+.+..|...+..++
T Consensus 280 ~~~~--~~~~~~~~~~~~~~v~~~~~~~------------------~---------~~~~~~~~~~~~~~~k~~~l~~ll 330 (475)
T PRK01297 280 FTDD--VMNLAKQWTTDPAIVEIEPENV------------------A---------SDTVEQHVYAVAGSDKYKLLYNLV 330 (475)
T ss_pred cCHH--HHHHHHHhccCCEEEEeccCcC------------------C---------CCcccEEEEEecchhHHHHHHHHH
Confidence 6321 11111111 1121111100000 0 000000111122345666677776
Q ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEE
Q psy11640 324 AYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVL 398 (552)
Q Consensus 324 ~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~V 398 (552)
... ...++||||+++..++.+...| .+..+||++++.+|.++++.|++ |++++||+|+++++|||+|++++|
T Consensus 331 ~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~vLvaT~~l~~GIDi~~v~~V 407 (475)
T PRK01297 331 TQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRVLVATDVAGRGIHIDGISHV 407 (475)
T ss_pred Hhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcEEEEccccccCCcccCCCEE
Confidence 643 5679999999999999999888 35679999999999999999996 899999999999999999999999
Q ss_pred EEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 399 IQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 399 I~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
|+++ .|.|...|+||+||+||.+.. ..++.|++.+
T Consensus 408 I~~~-~P~s~~~y~Qr~GRaGR~g~~-------g~~i~~~~~~ 442 (475)
T PRK01297 408 INFT-LPEDPDDYVHRIGRTGRAGAS-------GVSISFAGED 442 (475)
T ss_pred EEeC-CCCCHHHHHHhhCccCCCCCC-------ceEEEEecHH
Confidence 9999 599999999999999998873 4466666654
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.5e-29 Score=271.26 Aligned_cols=294 Identities=14% Similarity=0.094 Sum_probs=194.4
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEE
Q psy11640 7 ISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRF 86 (552)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~ 86 (552)
.+.+|++.-..--. .+-.+++||||+|||++++.++....+.+|||+|+++|+.||.+.+..+. ..+..+
T Consensus 12 ~r~~Q~~ai~~~l~------g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~g----i~~~~l 81 (470)
T TIGR00614 12 FRPVQLEVINAVLL------GRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASG----IPATFL 81 (470)
T ss_pred CCHHHHHHHHHHHc------CCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcC----CcEEEE
Confidence 34455555544322 23578999999999999988877778899999999999999999998643 345556
Q ss_pred ecCcccC----------CCCCcEEEEcccccccccccchhHHHHHHHH-hcCcccEEEEccCCcccccccccccCCCCCc
Q psy11640 87 TSEAKDK----------PMGCGILVTTYSMISHTQKRSWEADQTMQWL-QNQEWGIMLLDDGVPVAAKKNVEKDDAAVPE 155 (552)
Q Consensus 87 ~g~~~~~----------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l-~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~ 155 (552)
.++.... ....+|+++|++.+.... .....+ ....+++||+||||....
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~-------~~~~~l~~~~~i~~iViDEaH~i~~------------- 141 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASN-------RLLQTLEERKGITLIAVDEAHCISQ------------- 141 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCch-------hHHHHHHhcCCcCEEEEeCCcccCc-------------
Confidence 6554321 134789999999885421 122233 347899999999987421
Q ss_pred ccccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhc
Q psy11640 156 DEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235 (552)
Q Consensus 156 ~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~ 235 (552)
+ |+ ++.. .......+...++.
T Consensus 142 --~-------------------------g~-------------------------------~fr~-~~~~l~~l~~~~~~ 162 (470)
T TIGR00614 142 --W-------------------------GH-------------------------------DFRP-DYKALGSLKQKFPN 162 (470)
T ss_pred --c-------------------------cc-------------------------------ccHH-HHHHHHHHHHHcCC
Confidence 0 00 0000 00011113334455
Q ss_pred cceeeecceecccccchhhhhhhh---cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcC
Q psy11640 236 HCKLGLTATLLREDDKIADLNFLI---GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMN 312 (552)
Q Consensus 236 ~~~lgLTATp~r~d~~~~~L~~li---g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~ 312 (552)
...++||||+.... ..++...+ .|.++..++ -.+.....+.. ..
T Consensus 163 ~~~l~lTAT~~~~~--~~di~~~l~l~~~~~~~~s~--------~r~nl~~~v~~-----------------------~~ 209 (470)
T TIGR00614 163 VPIMALTATASPSV--REDILRQLNLKNPQIFCTSF--------DRPNLYYEVRR-----------------------KT 209 (470)
T ss_pred CceEEEecCCCHHH--HHHHHHHcCCCCCcEEeCCC--------CCCCcEEEEEe-----------------------CC
Confidence 66899999986431 11222211 122111110 00000000000 00
Q ss_pred chhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccc
Q psy11640 313 PNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVAD 387 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~ 387 (552)
...+..+..++... ..+.++||||+++..++.++..| .+..+||++++.+|.++++.|+. |+++|||+|++++
T Consensus 210 ~~~~~~l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~vLVaT~~~~ 287 (470)
T TIGR00614 210 PKILEDLLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQVVVATVAFG 287 (470)
T ss_pred ccHHHHHHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcEEEEechhh
Confidence 11222222333211 25667899999999999999988 46789999999999999999995 8999999999999
Q ss_pred cccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 388 ~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
+|||+|++++||+++ .|.|...|+||+||+||.|...
T Consensus 288 ~GID~p~V~~VI~~~-~P~s~~~y~Qr~GRaGR~G~~~ 324 (470)
T TIGR00614 288 MGINKPDVRFVIHYS-LPKSMESYYQESGRAGRDGLPS 324 (470)
T ss_pred ccCCcccceEEEEeC-CCCCHHHHHhhhcCcCCCCCCc
Confidence 999999999999999 6999999999999999988743
No 30
>KOG0354|consensus
Probab=99.97 E-value=2.1e-29 Score=271.32 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHcC--------CceEeC--------CCCHHHHHHHHHhhccCC
Q psy11640 314 NKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKMN--------KPYIYG--------PTSQSERIQILQNFKLNP 375 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L~--------~~~i~G--------~~~~~eR~~il~~F~~~g 375 (552)
+|++.+.+++..+. .+..++|||+.++..++.|...|. ...+.| +|++.+++++|+.|++ |
T Consensus 395 pkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~-G 473 (746)
T KOG0354|consen 395 PKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD-G 473 (746)
T ss_pred hhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-C
Confidence 47777766664432 445699999999999999988873 122333 5889999999999996 9
Q ss_pred CeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 376 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 376 ~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
+++|||||++|+|||||++||.||.|+. ..||...+||+|| ||+..++
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~-~snpIrmIQrrGR-gRa~ns~ 521 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDY-SSNPIRMVQRRGR-GRARNSK 521 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecC-CccHHHHHHHhcc-ccccCCe
Confidence 9999999999999999999999999994 8889999999999 9988764
No 31
>KOG0330|consensus
Probab=99.97 E-value=6.5e-30 Score=252.35 Aligned_cols=317 Identities=20% Similarity=0.247 Sum_probs=217.3
Q ss_pred chhhhhhhhhhHHHHHHHHH-----hhhccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHh
Q psy11640 6 VISGCKKKKKKKKKKKKKKK-----KKKKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.+..|++..-++--+=.+.- ..+..++.+.||+|||..++.+|... .-.+|||+||++|+.|..+.|+.
T Consensus 72 L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~ 151 (476)
T KOG0330|consen 72 LLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA 151 (476)
T ss_pred HHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH
Confidence 46678877644433322221 35678999999999999988777531 23599999999999999999999
Q ss_pred hhCCCCCcEEEEecCccc------CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccc
Q psy11640 75 WSTADDSMICRFTSEAKD------KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEK 148 (552)
Q Consensus 75 ~~~~~~~~I~~~~g~~~~------~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~ 148 (552)
++..-..++.++.|+..- -...++|+|+|++.|...... ..-+.-....++|+|||.+..
T Consensus 152 Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~-------Tkgf~le~lk~LVlDEADrlL------- 217 (476)
T KOG0330|consen 152 LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLEN-------TKGFSLEQLKFLVLDEADRLL------- 217 (476)
T ss_pred hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHh-------ccCccHHHhHHHhhchHHhhh-------
Confidence 976556788888887632 125689999999977432110 011122456779999874411
Q ss_pred cCCCCCcccccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHH
Q psy11640 149 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR 228 (552)
Q Consensus 149 ~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~ 228 (552)
..|| . .....
T Consensus 218 -----------d~dF--------------------------------------~---------------------~~ld~ 227 (476)
T KOG0330|consen 218 -----------DMDF--------------------------------------E---------------------EELDY 227 (476)
T ss_pred -----------hhhh--------------------------------------H---------------------HHHHH
Confidence 0111 0 11123
Q ss_pred HHHhhh-ccceeeecceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhh
Q psy11640 229 VLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLL 307 (552)
Q Consensus 229 ~l~~~~-~~~~lgLTATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~ 307 (552)
++..++ ....+.+|||.... . .+|.....=.|..+.. +. .|-....-++..
T Consensus 228 ILk~ip~erqt~LfsATMt~k---v----------------~kL~rasl~~p~~v~~-----s~----ky~tv~~lkQ~y 279 (476)
T KOG0330|consen 228 ILKVIPRERQTFLFSATMTKK---V----------------RKLQRASLDNPVKVAV-----SS----KYQTVDHLKQTY 279 (476)
T ss_pred HHHhcCccceEEEEEeecchh---h----------------HHHHhhccCCCeEEec-----cc----hhcchHHhhhhe
Confidence 555555 34567789997532 1 1222111112222211 10 011111112222
Q ss_pred HHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEE
Q psy11640 308 LYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFV 382 (552)
Q Consensus 308 ~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~ 382 (552)
+......|...|.+|++.. .|..+||||++....+.++-.| .+..+||.|++..|...++.|++ +.++||++
T Consensus 280 lfv~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~iLv~ 356 (476)
T KOG0330|consen 280 LFVPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSILVC 356 (476)
T ss_pred EeccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcEEEe
Confidence 3334445667788899876 7899999999999988888777 34669999999999999999996 89999999
Q ss_pred eCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhh
Q psy11640 383 SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445 (552)
Q Consensus 383 T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~ 445 (552)
|+++++|+|+|.+++||+|| .|.+...|+||+||++|+|+. ..+.+||++..+|-
T Consensus 357 TDVaSRGLDip~Vd~VVNyD-iP~~skDYIHRvGRtaRaGrs-------G~~ItlVtqyDve~ 411 (476)
T KOG0330|consen 357 TDVASRGLDIPHVDVVVNYD-IPTHSKDYIHRVGRTARAGRS-------GKAITLVTQYDVEL 411 (476)
T ss_pred cchhcccCCCCCceEEEecC-CCCcHHHHHHHcccccccCCC-------cceEEEEehhhhHH
Confidence 99999999999999999999 588899999999999999973 56899999966554
No 32
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=4e-29 Score=279.75 Aligned_cols=332 Identities=15% Similarity=0.183 Sum_probs=209.2
Q ss_pred hhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---------- 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---------- 93 (552)
....++++|||+|||++++.++. ..+.+++||+||++|+.|+.+.|++++......+..++|+....
T Consensus 282 ~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 282 PMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA 361 (681)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 34579999999999999887664 34668999999999999999999998854446788999886421
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCC
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 173 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 173 (552)
....+|+|+|+..+... . .+ .+++++|+||+|+.
T Consensus 362 ~g~~~IvVgT~~ll~~~----------v-~~--~~l~lvVIDE~Hrf--------------------------------- 395 (681)
T PRK10917 362 SGEADIVIGTHALIQDD----------V-EF--HNLGLVIIDEQHRF--------------------------------- 395 (681)
T ss_pred CCCCCEEEchHHHhccc----------c-hh--cccceEEEechhhh---------------------------------
Confidence 13589999999877321 1 12 68999999977652
Q ss_pred CCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchh
Q psy11640 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIA 253 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~ 253 (552)
....+..+.........|++||||......
T Consensus 396 ------------------------------------------------g~~qr~~l~~~~~~~~iL~~SATp~prtl~-- 425 (681)
T PRK10917 396 ------------------------------------------------GVEQRLALREKGENPHVLVMTATPIPRTLA-- 425 (681)
T ss_pred ------------------------------------------------hHHHHHHHHhcCCCCCEEEEeCCCCHHHHH--
Confidence 122222222222346789999999642110
Q ss_pred hhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeE
Q psy11640 254 DLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333 (552)
Q Consensus 254 ~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kv 333 (552)
+ ...|...... ..++- .+ -.+. ...++. ...+..++..+.+ ....+.++
T Consensus 426 -~-~~~g~~~~s~-i~~~p-~~-r~~i--~~~~~~-----------------------~~~~~~~~~~i~~-~~~~g~q~ 474 (681)
T PRK10917 426 -M-TAYGDLDVSV-IDELP-PG-RKPI--TTVVIP-----------------------DSRRDEVYERIRE-EIAKGRQA 474 (681)
T ss_pred -H-HHcCCCceEE-EecCC-CC-CCCc--EEEEeC-----------------------cccHHHHHHHHHH-HHHcCCcE
Confidence 0 1111110000 00000 00 0000 001110 1111122222323 33578899
Q ss_pred EEEeccHH------------HHHHHHHHc---CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEE
Q psy11640 334 IVFSDNVF------------ALKHYAVKM---NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVL 398 (552)
Q Consensus 334 IVF~~~~~------------~~~~l~~~L---~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~V 398 (552)
+|||+.++ ..+.|...+ ++..+||+|++.+|.+++++|++ |+++|||+|+++++|||+|++++|
T Consensus 475 ~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 475 YVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA-GEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEEECcceeeCcccCCCcEE
Confidence 99998543 223333333 47789999999999999999996 899999999999999999999999
Q ss_pred EEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEee---------ccc
Q psy11640 399 IQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVIT---------KLA 469 (552)
Q Consensus 399 I~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~---------~~~ 469 (552)
|+++.+.....++.|++||+||.+. ..++|.+.+... .....+|...+.+....|.+-. ++-
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~-------~g~~ill~~~~~--~~~~~~rl~~~~~~~dgf~iae~dl~~rg~g~~~ 624 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAA-------QSYCVLLYKDPL--SETARERLKIMRETNDGFVIAEKDLELRGPGELL 624 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCC-------ceEEEEEECCCC--ChhHHHHHHHHHHhcchHHHHHHhHhhCCCcccc
Confidence 9999533467899999999999875 355666664321 1124556666655444443321 122
Q ss_pred ccccc--cCCCCCChHHHHHHHHHHHhc
Q psy11640 470 GMEEE--RGMHYSTRDEQGQLLQQVLAA 495 (552)
Q Consensus 470 ~~~~~--~~~~~~~~~~~~~ll~~~~~~ 495 (552)
|..+. +++.+.+.....+++..+..+
T Consensus 625 g~~q~g~~~~~~~~~~~d~~l~~~a~~~ 652 (681)
T PRK10917 625 GTRQSGLPEFKVADLVRDEELLEEARKD 652 (681)
T ss_pred CceecCCCCeeEeeHhhhHHHHHHHHHH
Confidence 22222 356666666666777665543
No 33
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=8e-30 Score=270.41 Aligned_cols=291 Identities=15% Similarity=0.178 Sum_probs=189.9
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc------CCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD------KPM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~------~~~ 95 (552)
+-.++++|||+|||++++.++.. .+.++|||+|+++|+.|+.+.+..+.......+....|+... ...
T Consensus 66 ~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 145 (401)
T PTZ00424 66 YDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKA 145 (401)
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcC
Confidence 34678899999999988765542 245799999999999999999988875444455555554321 113
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
+.+|+|+|++.+.....+ ..+...+++++|+||+|+.... .|
T Consensus 146 ~~~Ivv~Tp~~l~~~l~~--------~~~~l~~i~lvViDEah~~~~~-------------~~----------------- 187 (401)
T PTZ00424 146 GVHMVVGTPGRVYDMIDK--------RHLRVDDLKLFILDEADEMLSR-------------GF----------------- 187 (401)
T ss_pred CCCEEEECcHHHHHHHHh--------CCcccccccEEEEecHHHHHhc-------------ch-----------------
Confidence 468999999977432111 1122367899999988763210 00
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~ 254 (552)
......++..+ +....+++|||+... ...
T Consensus 188 -----------------------------------------------~~~~~~i~~~~~~~~~~i~~SAT~~~~---~~~ 217 (401)
T PTZ00424 188 -----------------------------------------------KGQIYDVFKKLPPDVQVALFSATMPNE---ILE 217 (401)
T ss_pred -----------------------------------------------HHHHHHHHhhCCCCcEEEEEEecCCHH---HHH
Confidence 00011122333 235689999997431 111
Q ss_pred hh-hhh-cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCe
Q psy11640 255 LN-FLI-GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332 (552)
Q Consensus 255 L~-~li-g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~k 332 (552)
+. .+. .|........++ .+... ...++.... ...+...+..++... ...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~--------------------~~~~~~~l~~~~~~~--~~~~ 269 (401)
T PTZ00424 218 LTTKFMRDPKRILVKKDEL----TLEGI--RQFYVAVEK--------------------EEWKFDTLCDLYETL--TITQ 269 (401)
T ss_pred HHHHHcCCCEEEEeCCCCc----ccCCc--eEEEEecCh--------------------HHHHHHHHHHHHHhc--CCCe
Confidence 11 111 111100000000 00000 001111110 012333444454433 4578
Q ss_pred EEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCC
Q psy11640 333 TIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGS 407 (552)
Q Consensus 333 vIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s 407 (552)
+||||+++..++.++..| ++..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++||+++ .+.|
T Consensus 270 ~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~vLvaT~~l~~GiDip~v~~VI~~~-~p~s 347 (401)
T PTZ00424 270 AIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRVLITTDLLARGIDVQQVSLVINYD-LPAS 347 (401)
T ss_pred EEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEEEcccccCCcCcccCCEEEEEC-CCCC
Confidence 999999999999999888 46789999999999999999995 8999999999999999999999999999 6999
Q ss_pred hhhHHHHhhhccccCCCCCCCceeEEEEEEecCCch
Q psy11640 408 RRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443 (552)
Q Consensus 408 ~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~ 443 (552)
...|.||+||+||.+.. ..+|.|++.+..
T Consensus 348 ~~~y~qr~GRagR~g~~-------G~~i~l~~~~~~ 376 (401)
T PTZ00424 348 PENYIHRIGRSGRFGRK-------GVAINFVTPDDI 376 (401)
T ss_pred HHHEeecccccccCCCC-------ceEEEEEcHHHH
Confidence 99999999999998752 456777876543
No 34
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=7.3e-29 Score=281.78 Aligned_cols=303 Identities=17% Similarity=0.182 Sum_probs=198.4
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~ 94 (552)
.-.++++|||+|||++++.++. ..+.+++|||||++|+.|+.+.|.+++..-+..|..++|..... .
T Consensus 473 ~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~ 552 (926)
T TIGR00580 473 MDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS 552 (926)
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc
Confidence 3569999999999999887654 34678999999999999999999987653345677777654210 1
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+|+|+..+... +.-.+++++|+||+|+
T Consensus 553 g~~dIVIGTp~ll~~~-------------v~f~~L~llVIDEahr----------------------------------- 584 (926)
T TIGR00580 553 GKIDILIGTHKLLQKD-------------VKFKDLGLLIIDEEQR----------------------------------- 584 (926)
T ss_pred CCceEEEchHHHhhCC-------------CCcccCCEEEeecccc-----------------------------------
Confidence 3478999999765321 1126789999997765
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhh
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~ 254 (552)
........+.........|++||||...... ..
T Consensus 585 ----------------------------------------------fgv~~~~~L~~~~~~~~vL~~SATpiprtl~-~~ 617 (926)
T TIGR00580 585 ----------------------------------------------FGVKQKEKLKELRTSVDVLTLSATPIPRTLH-MS 617 (926)
T ss_pred ----------------------------------------------cchhHHHHHHhcCCCCCEEEEecCCCHHHHH-HH
Confidence 1112222222222356789999999643111 00
Q ss_pred hhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEE
Q psy11640 255 LNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334 (552)
Q Consensus 255 L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvI 334 (552)
+.....+.+..... .+ ...+.....+.. + ..+...++.. ...+.+++
T Consensus 618 l~g~~d~s~I~~~p-----~~---R~~V~t~v~~~~----------------------~--~~i~~~i~~e-l~~g~qv~ 664 (926)
T TIGR00580 618 MSGIRDLSIIATPP-----ED---RLPVRTFVMEYD----------------------P--ELVREAIRRE-LLRGGQVF 664 (926)
T ss_pred HhcCCCcEEEecCC-----CC---ccceEEEEEecC----------------------H--HHHHHHHHHH-HHcCCeEE
Confidence 10000011100000 00 000000111111 0 0111112222 23678999
Q ss_pred EEeccHHHHHHHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCC
Q psy11640 335 VFSDNVFALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGS 407 (552)
Q Consensus 335 VF~~~~~~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s 407 (552)
|||+++..++.++..| ++..+||+|++.+|.+++++|++ |+++|||+|+++++|||+|++++||+++.+..+
T Consensus 665 if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~g 743 (926)
T TIGR00580 665 YVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQVLVCTTIIETGIDIPNANTIIIERADKFG 743 (926)
T ss_pred EEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEEECChhhcccccccCCEEEEecCCCCC
Confidence 9999999998887776 35679999999999999999996 899999999999999999999999998843446
Q ss_pred hhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHc---CCCeeEee
Q psy11640 408 RRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQ---GYSYKVIT 466 (552)
Q Consensus 408 ~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~---g~~~~v~~ 466 (552)
..++.||+||+||.+. ..++|.|+..+.....-+.+|.+.+.+- |-.|++..
T Consensus 744 ls~l~Qr~GRvGR~g~-------~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~ 798 (926)
T TIGR00580 744 LAQLYQLRGRVGRSKK-------KAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIAL 798 (926)
T ss_pred HHHHHHHhcCCCCCCC-------CeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHH
Confidence 7789999999999776 3677888766432234566777766443 33555543
No 35
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=1.4e-28 Score=273.47 Aligned_cols=329 Identities=15% Similarity=0.181 Sum_probs=204.8
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PM 95 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~ 95 (552)
..++.+|||+|||++++.++. ..+.+++||+||++|+.||.+++++++...+..+..++|+.... ..
T Consensus 258 ~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g 337 (630)
T TIGR00643 258 NRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG 337 (630)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC
Confidence 358999999999999876554 34679999999999999999999998854356788888876421 13
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|+..+... +.-.+++++|+||+|+-
T Consensus 338 ~~~IiVgT~~ll~~~-------------~~~~~l~lvVIDEaH~f----------------------------------- 369 (630)
T TIGR00643 338 QIHLVVGTHALIQEK-------------VEFKRLALVIIDEQHRF----------------------------------- 369 (630)
T ss_pred CCCEEEecHHHHhcc-------------ccccccceEEEechhhc-----------------------------------
Confidence 469999999876421 11267899999987652
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh---ccceeeecceecccccch
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ---SHCKLGLTATLLREDDKI 252 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~---~~~~lgLTATp~r~d~~~ 252 (552)
.......+..... .+..|++||||......
T Consensus 370 ----------------------------------------------g~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~- 402 (630)
T TIGR00643 370 ----------------------------------------------GVEQRKKLREKGQGGFTPHVLVMSATPIPRTLA- 402 (630)
T ss_pred ----------------------------------------------cHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHH-
Confidence 1111122222222 46789999999643111
Q ss_pred hhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCe
Q psy11640 253 ADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332 (552)
Q Consensus 253 ~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~k 332 (552)
+ ...|..-. ....++- .+- .+. ...++. ...+..++..+ ......+.+
T Consensus 403 --l-~~~~~l~~-~~i~~~p-~~r-~~i--~~~~~~-----------------------~~~~~~~~~~i-~~~l~~g~q 450 (630)
T TIGR00643 403 --L-TVYGDLDT-SIIDELP-PGR-KPI--TTVLIK-----------------------HDEKDIVYEFI-EEEIAKGRQ 450 (630)
T ss_pred --H-HhcCCcce-eeeccCC-CCC-Cce--EEEEeC-----------------------cchHHHHHHHH-HHHHHhCCc
Confidence 0 11111000 0000000 000 000 011111 01111222222 323347889
Q ss_pred EEEEeccHH--------HHHHHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCE
Q psy11640 333 TIVFSDNVF--------ALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANV 397 (552)
Q Consensus 333 vIVF~~~~~--------~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~ 397 (552)
++|||+.++ .++.++..| ++..+||+|++.+|.+++++|++ |+++|||+|+++++|||+|++++
T Consensus 451 ~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILVaT~vie~GvDiP~v~~ 529 (630)
T TIGR00643 451 AYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE-GEVDILVATTVIEVGVDVPNATV 529 (630)
T ss_pred EEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEEECceeecCcccCCCcE
Confidence 999998652 233333333 36789999999999999999996 89999999999999999999999
Q ss_pred EEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEe---------ecc
Q psy11640 398 LIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI---------TKL 468 (552)
Q Consensus 398 VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~---------~~~ 468 (552)
||+++.+..+..++.||+||+||.+.. .++|.+..... .....+|.+.+.+....|.+- .++
T Consensus 530 VIi~~~~r~gls~lhQ~~GRvGR~g~~-------g~~il~~~~~~--~~~~~~rl~~~~~~~dgf~iae~dl~~Rg~g~~ 600 (630)
T TIGR00643 530 MVIEDAERFGLSQLHQLRGRVGRGDHQ-------SYCLLVYKNPK--SESAKKRLRVMADTLDGFVIAEEDLELRGPGDL 600 (630)
T ss_pred EEEeCCCcCCHHHHHHHhhhcccCCCC-------cEEEEEECCCC--CHHHHHHHHHHHhhcccHHHHHHHHhcCCCccc
Confidence 999985444788999999999998752 44554542211 122345555565433333322 122
Q ss_pred cccccc--cCCCCCChHHHHHHHHHHHh
Q psy11640 469 AGMEEE--RGMHYSTRDEQGQLLQQVLA 494 (552)
Q Consensus 469 ~~~~~~--~~~~~~~~~~~~~ll~~~~~ 494 (552)
-|..+. +++.+.+.....++|.....
T Consensus 601 ~g~~QsG~~~~~~~~~~~d~~~l~~a~~ 628 (630)
T TIGR00643 601 LGTKQSGYPEFRVADLVRDREILVEARE 628 (630)
T ss_pred CCCcccCCCcceeecHHHHHHHHHHHHH
Confidence 232222 35667777666677766543
No 36
>KOG1015|consensus
Probab=99.97 E-value=3.1e-29 Score=267.96 Aligned_cols=144 Identities=19% Similarity=0.293 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-------------------------C--CceEeCCCCHHHHHHH
Q psy11640 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-------------------------N--KPYIYGPTSQSERIQI 367 (552)
Q Consensus 315 K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-------------------------~--~~~i~G~~~~~eR~~i 367 (552)
|+-+|.+||...+.-|+|+|||+++...++.|..+| | +..|+|++...+|+.+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 888888999888888999999999999999999988 1 3468999999999999
Q ss_pred HHhhccCCCee---EEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchh
Q psy11640 368 LQNFKLNPKVN---TIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444 (552)
Q Consensus 368 l~~F~~~g~~~---vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e 444 (552)
.++|++....+ +||+|.+|+.|||+-+||.||++| ..|||.-..|.+-|+.|.||.| +||+|+|++.||+|
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfD-asWNPSyDtQSIFRvyRfGQtK-----PvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFD-ASWNPSYDTQSIFRVYRFGQTK-----PVYIYRFIAQGTME 1280 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEe-cccCCccchHHHHHHHhhcCcC-----ceeehhhhhcccHH
Confidence 99999633333 466789999999999999999999 4999999999999999999987 69999999999999
Q ss_pred hHHHHHHHHHHHHcCCCeeEeec
Q psy11640 445 MSYSRKRQRFLINQGYSYKVITK 467 (552)
Q Consensus 445 ~~~~~~r~~~l~~~g~~~~v~~~ 467 (552)
++|+++ ...+|+.+++|+++
T Consensus 1281 eKIYkR---QVTKqsls~RVVDe 1300 (1567)
T KOG1015|consen 1281 EKIYKR---QVTKQSLSFRVVDE 1300 (1567)
T ss_pred HHHHHH---HHhHhhhhhhhhhH
Confidence 999963 46788888888863
No 37
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.3e-29 Score=272.68 Aligned_cols=291 Identities=18% Similarity=0.194 Sum_probs=200.1
Q ss_pred hccCeecCCCCchhHHHHHHHHh-cC------Cc-EEEEecCchhHHHHHHHHHhhhCCC-CCcEEEEecCcccC-----
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-VR------KR-ALVLCNSGVSVEQWKHQFKLWSTAD-DSMICRFTSEAKDK----- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-~~------~~-~LIl~Pt~~Lv~Qw~~e~~~~~~~~-~~~I~~~~g~~~~~----- 93 (552)
+--++.++||+|||+.++..+.. .. .. +|||+||++|+.|..+++..|.... ...+..+.|+..-.
T Consensus 67 ~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~ 146 (513)
T COG0513 67 RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA 146 (513)
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH
Confidence 34577899999999998776542 21 12 9999999999999999999988654 45667666664221
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCC
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPD 172 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~ 172 (552)
..+.+|+|+|+..+.....+ ..+......++|+|||.+.... .|
T Consensus 147 l~~~~~ivVaTPGRllD~i~~--------~~l~l~~v~~lVlDEADrmLd~-------------Gf-------------- 191 (513)
T COG0513 147 LKRGVDIVVATPGRLLDLIKR--------GKLDLSGVETLVLDEADRMLDM-------------GF-------------- 191 (513)
T ss_pred HhcCCCEEEECccHHHHHHHc--------CCcchhhcCEEEeccHhhhhcC-------------CC--------------
Confidence 13489999999976422111 1233467889999987442210 00
Q ss_pred CCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccc
Q psy11640 173 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDK 251 (552)
Q Consensus 173 ~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~ 251 (552)
......++..++ ....+.+|||... .
T Consensus 192 --------------------------------------------------~~~i~~I~~~~p~~~qtllfSAT~~~---~ 218 (513)
T COG0513 192 --------------------------------------------------IDDIEKILKALPPDRQTLLFSATMPD---D 218 (513)
T ss_pred --------------------------------------------------HHHHHHHHHhCCcccEEEEEecCCCH---H
Confidence 111223555554 3667889999743 1
Q ss_pred hhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCc-hhHHHHHHHHHHHhhcC
Q psy11640 252 IADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNP-NKYRATQYLIAYHERRG 330 (552)
Q Consensus 252 ~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~-~K~~~l~~Ll~~~~~~g 330 (552)
+..+. ..++..+....+..+.. .............+... .|+.+|..|+... ..
T Consensus 219 i~~l~-----------------~~~l~~p~~i~v~~~~~------~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~--~~ 273 (513)
T COG0513 219 IRELA-----------------RRYLNDPVEIEVSVEKL------ERTLKKIKQFYLEVESEEEKLELLLKLLKDE--DE 273 (513)
T ss_pred HHHHH-----------------HHHccCCcEEEEccccc------cccccCceEEEEEeCCHHHHHHHHHHHHhcC--CC
Confidence 22221 11111111111110000 00000111111222222 4889999999876 45
Q ss_pred CeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC
Q psy11640 331 DKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG 405 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~ 405 (552)
.++||||++...++.|+..| .+..|||++++.+|.++++.|++ |+++|||||+++++|||+|++++||+|| .|
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~vLVaTDvaaRGiDi~~v~~VinyD-~p 351 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRVLVATDVAARGLDIPDVSHVINYD-LP 351 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEEEechhhccCCccccceeEEcc-CC
Confidence 58999999999999999888 36789999999999999999995 8999999999999999999999999999 69
Q ss_pred CChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 406 GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 406 ~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
.++..|+||+||+||+|.. ...+.|++.
T Consensus 352 ~~~e~yvHRiGRTgRaG~~-------G~ai~fv~~ 379 (513)
T COG0513 352 LDPEDYVHRIGRTGRAGRK-------GVAISFVTE 379 (513)
T ss_pred CCHHHheeccCccccCCCC-------CeEEEEeCc
Confidence 9999999999999999974 456888876
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.96 E-value=5.6e-29 Score=274.77 Aligned_cols=280 Identities=16% Similarity=0.150 Sum_probs=186.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~------~ 94 (552)
+--++++|||+|||++++.++.. ...++||||||++|+.||.+++..|... +...+..++|+.... .
T Consensus 44 ~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~ 123 (629)
T PRK11634 44 RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 (629)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc
Confidence 45788899999999997665532 1347899999999999999999988643 244566555554211 1
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+|+|++.+.....+ ..+...++.+||+||||..... .|
T Consensus 124 ~~~~IVVgTPgrl~d~l~r--------~~l~l~~l~~lVlDEAd~ml~~-------------gf---------------- 166 (629)
T PRK11634 124 QGPQIVVGTPGRLLDHLKR--------GTLDLSKLSGLVLDEADEMLRM-------------GF---------------- 166 (629)
T ss_pred CCCCEEEECHHHHHHHHHc--------CCcchhhceEEEeccHHHHhhc-------------cc----------------
Confidence 4578999999977432111 1122257889999998763210 00
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchh
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIA 253 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~ 253 (552)
......++..++ ....+++|||+... +.
T Consensus 167 ------------------------------------------------~~di~~Il~~lp~~~q~llfSAT~p~~---i~ 195 (629)
T PRK11634 167 ------------------------------------------------IEDVETIMAQIPEGHQTALFSATMPEA---IR 195 (629)
T ss_pred ------------------------------------------------HHHHHHHHHhCCCCCeEEEEEccCChh---HH
Confidence 000112333343 34568899997421 22
Q ss_pred hhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeE
Q psy11640 254 DLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333 (552)
Q Consensus 254 ~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kv 333 (552)
.+...+ +..+..+.+..... ...........+....|...|..++... ...++
T Consensus 196 ~i~~~~-----------------l~~~~~i~i~~~~~--------~~~~i~q~~~~v~~~~k~~~L~~~L~~~--~~~~~ 248 (629)
T PRK11634 196 RITRRF-----------------MKEPQEVRIQSSVT--------TRPDISQSYWTVWGMRKNEALVRFLEAE--DFDAA 248 (629)
T ss_pred HHHHHH-----------------cCCCeEEEccCccc--------cCCceEEEEEEechhhHHHHHHHHHHhc--CCCCE
Confidence 221110 11111111000000 0000000001112234666777777654 45789
Q ss_pred EEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCCh
Q psy11640 334 IVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSR 408 (552)
Q Consensus 334 IVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~ 408 (552)
||||+++..++.++..| .+..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++||+++ .|.+.
T Consensus 249 IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~ILVATdv~arGIDip~V~~VI~~d-~P~~~ 326 (629)
T PRK11634 249 IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDILIATDVAARGLDVERISLVVNYD-IPMDS 326 (629)
T ss_pred EEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCEEEEcchHhcCCCcccCCEEEEeC-CCCCH
Confidence 99999999999999988 35679999999999999999996 8999999999999999999999999999 59999
Q ss_pred hhHHHHhhhccccCCC
Q psy11640 409 RQEAQRLGRILRAKKG 424 (552)
Q Consensus 409 ~q~~Qr~GRi~R~~~~ 424 (552)
..|+||+||+||.+..
T Consensus 327 e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 327 ESYVHRIGRTGRAGRA 342 (629)
T ss_pred HHHHHHhccccCCCCc
Confidence 9999999999998873
No 39
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=3e-28 Score=273.93 Aligned_cols=322 Identities=15% Similarity=0.155 Sum_probs=204.5
Q ss_pred hccCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~~ 97 (552)
+--++.+|||+|||++++.++.. .+.++|||+||++|+.|..++++.+. .....+..++|+.... ...+
T Consensus 52 ~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~ 130 (742)
T TIGR03817 52 RHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHA 130 (742)
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCC
Confidence 45677899999999998776542 23579999999999999999999886 3345788888876431 1457
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+|+|+|++++........ ......+ .+.++||+||+|... +.|+.
T Consensus 131 ~IivtTPd~L~~~~L~~~--~~~~~~l--~~l~~vViDEah~~~--------------g~fg~----------------- 175 (742)
T TIGR03817 131 RYVLTNPDMLHRGILPSH--ARWARFL--RRLRYVVIDECHSYR--------------GVFGS----------------- 175 (742)
T ss_pred CEEEEChHHHHHhhccch--hHHHHHH--hcCCEEEEeChhhcc--------------CccHH-----------------
Confidence 999999998853211110 0111234 678999999998631 11110
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHH---HHHhh-hccceeeecceecccccchh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRR---VLTIV-QSHCKLGLTATLLREDDKIA 253 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~---~l~~~-~~~~~lgLTATp~r~d~~~~ 253 (552)
|. ....++ +.... ..+..+++|||.-.+ ..
T Consensus 176 -----------------------------------------~~--~~il~rL~ri~~~~g~~~q~i~~SATi~n~---~~ 209 (742)
T TIGR03817 176 -----------------------------------------HV--ALVLRRLRRLCARYGASPVFVLASATTADP---AA 209 (742)
T ss_pred -----------------------------------------HH--HHHHHHHHHHHHhcCCCCEEEEEecCCCCH---HH
Confidence 00 011111 12211 235688999997532 22
Q ss_pred hhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeE
Q psy11640 254 DLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333 (552)
Q Consensus 254 ~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kv 333 (552)
....++|......+ ..+.-.......+|.+...+ ....... .........+...+..++. .+.++
T Consensus 210 ~~~~l~g~~~~~i~-----~~~~~~~~~~~~~~~p~~~~----~~~~~~~--~~r~~~~~~~~~~l~~l~~----~~~~~ 274 (742)
T TIGR03817 210 AASRLIGAPVVAVT-----EDGSPRGARTVALWEPPLTE----LTGENGA--PVRRSASAEAADLLADLVA----EGART 274 (742)
T ss_pred HHHHHcCCCeEEEC-----CCCCCcCceEEEEecCCccc----ccccccc--ccccchHHHHHHHHHHHHH----CCCCE
Confidence 23334442211110 11111111112233321100 0000000 0000001123444444543 57899
Q ss_pred EEEeccHHHHHHHHHHc-------------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 334 IVFSDNVFALKHYAVKM-------------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 334 IVF~~~~~~~~~l~~~L-------------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
||||+++..++.++..| ++..+||++++++|.+++++|++ |++++||+|+++++|||+|++++||+
T Consensus 275 IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~vLVaTd~lerGIDI~~vd~VI~ 353 (742)
T TIGR03817 275 LTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLGVATTNALELGVDISGLDAVVI 353 (742)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceEEEECchHhccCCcccccEEEE
Confidence 99999999999988764 34678999999999999999995 99999999999999999999999999
Q ss_pred eccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHH
Q psy11640 401 ISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455 (552)
Q Consensus 401 ~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l 455 (552)
++. |.+...|.||+||+||.|+. ..++.+++.+..+.++.....+++
T Consensus 354 ~~~-P~s~~~y~qRiGRaGR~G~~-------g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 354 AGF-PGTRASLWQQAGRAGRRGQG-------ALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred eCC-CCCHHHHHHhccccCCCCCC-------cEEEEEeCCChHHHHHHhCHHHHh
Confidence 994 99999999999999998763 446667766666666655444333
No 40
>KOG1002|consensus
Probab=99.96 E-value=1.4e-28 Score=248.55 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHhhcC--CeEEEEeccHHHHHHHHHHcC-----CceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc
Q psy11640 315 KYRATQYLIAYHERRG--DKTIVFSDNVFALKHYAVKMN-----KPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA 386 (552)
Q Consensus 315 K~~~l~~Ll~~~~~~g--~kvIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~ 386 (552)
|+++|.+-|.....+. -|.|||++++.+++.+.-.|+ +..+.|+|++..|...++.|.++.+|+|++.| ++|
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 7777766555544333 399999999999999998883 45689999999999999999988999998888 999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHH
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~ 452 (552)
|..+||+.|+.|+++| |||||.-.-|...|+||+||-+ ++.|.+|+-++|+|++|.+...
T Consensus 701 GVALNLteASqVFmmD-PWWNpaVe~Qa~DRiHRIGQ~r-----Pvkvvrf~iEnsiE~kIieLQe 760 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMD-PWWNPAVEWQAQDRIHRIGQYR-----PVKVVRFCIENSIEEKIIELQE 760 (791)
T ss_pred ceEeeechhceeEeec-ccccHHHHhhhhhhHHhhcCcc-----ceeEEEeehhccHHHHHHHHHH
Confidence 9999999999999999 7999999999999999999976 6999999999999999987543
No 41
>KOG0345|consensus
Probab=99.96 E-value=6e-29 Score=250.68 Aligned_cols=281 Identities=20% Similarity=0.238 Sum_probs=199.4
Q ss_pred ccCee-cCCCCchhHHHHHHHHhc---------CC--cEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCccc---
Q psy11640 29 KKKKK-KRPSAGKSLVGVTACCTV---------RK--RALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKD--- 92 (552)
Q Consensus 29 ~~~~v-lpTG~GKTl~ai~~i~~~---------~~--~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~--- 92 (552)
|-++| +|||+|||++++.++... .. -+|||+||++|+.|..+.+..|... +......+.|+..-
T Consensus 44 KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~D 123 (567)
T KOG0345|consen 44 KDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEED 123 (567)
T ss_pred CceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHH
Confidence 34444 999999999999877531 11 4899999999999999998877743 44455566665422
Q ss_pred ----CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 93 ----KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 93 ----~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
+..++.|+|+|++.|..... ..++.+......++|+|||.+-. +
T Consensus 124 i~~fkee~~nIlVgTPGRL~di~~------~~~~~l~~rsLe~LVLDEADrLl--------------d------------ 171 (567)
T KOG0345|consen 124 IKTFKEEGPNILVGTPGRLLDILQ------REAEKLSFRSLEILVLDEADRLL--------------D------------ 171 (567)
T ss_pred HHHHHHhCCcEEEeCchhHHHHHh------chhhhccccccceEEecchHhHh--------------c------------
Confidence 12568899999997743211 11333544688999999874411 0
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeee-cceecc
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGL-TATLLR 247 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgL-TATp~r 247 (552)
+. -......++..++..++-|| |||-..
T Consensus 172 -------------------------------------------------mg--Fe~~~n~ILs~LPKQRRTGLFSATq~~ 200 (567)
T KOG0345|consen 172 -------------------------------------------------MG--FEASVNTILSFLPKQRRTGLFSATQTQ 200 (567)
T ss_pred -------------------------------------------------cc--HHHHHHHHHHhcccccccccccchhhH
Confidence 00 01223558888988888876 898643
Q ss_pred cccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCC--CH-HHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHH
Q psy11640 248 EDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPM--SP-EFYREYLVCKTSKRLLLYVMNPNKYRATQYLIA 324 (552)
Q Consensus 248 ~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l--~~-~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~ 324 (552)
+ ..+|...|.-.|+.+..-.-.+ +| ....+|+. +....|+.+|.++|.
T Consensus 201 ~-------------------v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v----------~~a~eK~~~lv~~L~ 251 (567)
T KOG0345|consen 201 E-------------------VEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLV----------CEADEKLSQLVHLLN 251 (567)
T ss_pred H-------------------HHHHHHhhccCceeeeecccccccCchhhcceeeE----------ecHHHHHHHHHHHHh
Confidence 2 2344445544444422211111 22 12223332 233467888888887
Q ss_pred HHhhcCCeEEEEeccHHHHHHHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCE
Q psy11640 325 YHERRGDKTIVFSDNVFALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANV 397 (552)
Q Consensus 325 ~~~~~g~kvIVF~~~~~~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~ 397 (552)
.. ...|+|||..+...+++....| .+..+||.+++..|..++..|++ ..--+|++|+++++|||+|++|.
T Consensus 252 ~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~-~~~~vl~~TDVaARGlDip~iD~ 328 (567)
T KOG0345|consen 252 NN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK-LSNGVLFCTDVAARGLDIPGIDL 328 (567)
T ss_pred cc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh-ccCceEEeehhhhccCCCCCceE
Confidence 65 6789999999999999887776 35679999999999999999996 57789999999999999999999
Q ss_pred EEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 398 LIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 398 VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
||++| ||.++..|.||.||++|.|+.+
T Consensus 329 VvQ~D-pP~~~~~FvHR~GRTaR~gr~G 355 (567)
T KOG0345|consen 329 VVQFD-PPKDPSSFVHRCGRTARAGREG 355 (567)
T ss_pred EEecC-CCCChhHHHhhcchhhhccCcc
Confidence 99999 7999999999999999998854
No 42
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=6.4e-28 Score=279.61 Aligned_cols=331 Identities=16% Similarity=0.163 Sum_probs=207.6
Q ss_pred hhhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc--C-------
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--K------- 93 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~--~------- 93 (552)
+..-.++++|||+|||.+++.++. ..+.+++|||||++|+.|+.+.|.+++..-+..+.+++|.... +
T Consensus 620 ~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l 699 (1147)
T PRK10689 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEA 699 (1147)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHH
Confidence 335579999999999998875543 3467899999999999999999997664323466666664321 1
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCC
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPD 172 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~ 172 (552)
....+|+|+|+..+... +.-.+++++|+||+|+.
T Consensus 700 ~~g~~dIVVgTp~lL~~~-------------v~~~~L~lLVIDEahrf-------------------------------- 734 (1147)
T PRK10689 700 AEGKIDILIGTHKLLQSD-------------VKWKDLGLLIVDEEHRF-------------------------------- 734 (1147)
T ss_pred HhCCCCEEEECHHHHhCC-------------CCHhhCCEEEEechhhc--------------------------------
Confidence 13578999999866321 11257999999987652
Q ss_pred CCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccc
Q psy11640 173 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDK 251 (552)
Q Consensus 173 ~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~ 251 (552)
...... .+..+ .....|++||||......
T Consensus 735 -------------------------------------------------G~~~~e-~lk~l~~~~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 735 -------------------------------------------------GVRHKE-RIKAMRADVDILTLTATPIPRTLN 764 (1147)
T ss_pred -------------------------------------------------chhHHH-HHHhcCCCCcEEEEcCCCCHHHHH
Confidence 111111 22222 345789999999643110
Q ss_pred hhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCC
Q psy11640 252 IADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD 331 (552)
Q Consensus 252 ~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~ 331 (552)
..+..+..+........ +-+ ++. .+..... + ......++... .+++
T Consensus 765 -l~~~gl~d~~~I~~~p~-----~r~-~v~--~~~~~~~----------------------~--~~~k~~il~el-~r~g 810 (1147)
T PRK10689 765 -MAMSGMRDLSIIATPPA-----RRL-AVK--TFVREYD----------------------S--LVVREAILREI-LRGG 810 (1147)
T ss_pred -HHHhhCCCcEEEecCCC-----CCC-Cce--EEEEecC----------------------c--HHHHHHHHHHH-hcCC
Confidence 00001111111110000 000 000 0000000 0 01111222222 2577
Q ss_pred eEEEEeccHHHHHHHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccC
Q psy11640 332 KTIVFSDNVFALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH 404 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~ 404 (552)
+++|||+++..++.++..| ++..+||+|++.+|.+++.+|++ |+++|||+|+++++|||+|++++||+.+..
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCEEEECchhhcccccccCCEEEEecCC
Confidence 9999999999888777766 46689999999999999999995 899999999999999999999999987643
Q ss_pred CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHH---cCCCeeEeec---------ccccc
Q psy11640 405 GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLIN---QGYSYKVITK---------LAGME 472 (552)
Q Consensus 405 ~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~---~g~~~~v~~~---------~~~~~ 472 (552)
..+..+|.||+||+||.+. .+++|.+...+..-...+.+|.+.+.+ .|-.|++... +-|..
T Consensus 890 ~fglaq~~Qr~GRvGR~g~-------~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~~~g~~ 962 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHH-------QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 (1147)
T ss_pred CCCHHHHHHHhhccCCCCC-------ceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCccCCCCc
Confidence 4567889999999999876 367776665543333456677665543 3446666532 33334
Q ss_pred cccCCCCCChHHHHHHHHHHH
Q psy11640 473 EERGMHYSTRDEQGQLLQQVL 493 (552)
Q Consensus 473 ~~~~~~~~~~~~~~~ll~~~~ 493 (552)
+.+....-.-+--.+||.+..
T Consensus 963 q~g~~~~~g~~~y~~~l~~~~ 983 (1147)
T PRK10689 963 QSGQMETIGFSLYMELLENAV 983 (1147)
T ss_pred cCCCccccCHHHHHHHHHHHH
Confidence 433333333444445665443
No 43
>KOG4439|consensus
Probab=99.96 E-value=4.3e-28 Score=253.99 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHH-hhcCCeEEEEeccHHHHHHHHHHcC-----CceEeCCCCHHHHHHHHHhhccC-CCeeEEEEe-Ccc
Q psy11640 315 KYRATQYLIAYH-ERRGDKTIVFSDNVFALKHYAVKMN-----KPYIYGPTSQSERIQILQNFKLN-PKVNTIFVS-KVA 386 (552)
Q Consensus 315 K~~~l~~Ll~~~-~~~g~kvIVF~~~~~~~~~l~~~L~-----~~~i~G~~~~~eR~~il~~F~~~-g~~~vLv~T-~v~ 386 (552)
|+..+.++++.. -...+|++|.++++..+..+...++ ...++|.....+|+.+++.|+.+ |..+|++.+ .+|
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 554444444433 3567899999999999999999982 45689999999999999999643 568999998 999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHH
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l 455 (552)
|.||||..+|++|++| .-|||..+.|+..||.|.||.| +|+||+|+..||+|..+.......+
T Consensus 810 GVGLNL~GaNHlilvD-lHWNPaLEqQAcDRIYR~GQkK-----~V~IhR~~~~gTvEqrV~~LQdkKl 872 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVD-LHWNPALEQQACDRIYRMGQKK-----DVFIHRLMCKGTVEQRVKSLQDKKL 872 (901)
T ss_pred cceeeecccceEEEEe-cccCHHHHHHHHHHHHHhcccC-----ceEEEEEEecCcHHHHHHHHHHHHH
Confidence 9999999999999999 6999999999999999999977 6999999999999998877655444
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.96 E-value=1.8e-27 Score=263.67 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=186.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~ 97 (552)
+..+++||||+|||++++.++....+.+|||+|+++|+.||.+.+..+. ..+..+.+..... ....
T Consensus 41 ~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~ 116 (607)
T PRK11057 41 RDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQI 116 (607)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 4678999999999999988887778899999999999999999998653 2344454443211 1346
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+++++|++.+... ...+.+....+++||+||||.... ..+.|
T Consensus 117 ~il~~tPe~l~~~--------~~~~~l~~~~l~~iVIDEaH~i~~-----------~G~~f------------------- 158 (607)
T PRK11057 117 KLLYIAPERLMMD--------NFLEHLAHWNPALLAVDEAHCISQ-----------WGHDF------------------- 158 (607)
T ss_pred cEEEEChHHhcCh--------HHHHHHhhCCCCEEEEeCcccccc-----------ccCcc-------------------
Confidence 7999999987542 233445556899999999987321 00000
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNF 257 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~ 257 (552)
.| ++ .....+...++....++||||+..... .++..
T Consensus 159 --------------r~-----------------------~y-----~~L~~l~~~~p~~~~v~lTAT~~~~~~--~di~~ 194 (607)
T PRK11057 159 --------------RP-----------------------EY-----AALGQLRQRFPTLPFMALTATADDTTR--QDIVR 194 (607)
T ss_pred --------------cH-----------------------HH-----HHHHHHHHhCCCCcEEEEecCCChhHH--HHHHH
Confidence 00 00 111123333445568999999864311 11111
Q ss_pred hh---cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEE
Q psy11640 258 LI---GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334 (552)
Q Consensus 258 li---g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvI 334 (552)
.+ .|..+... +-.+ .. .|. ......+...+..++.. ..+.++|
T Consensus 195 ~l~l~~~~~~~~~--------~~r~-nl-------------~~~----------v~~~~~~~~~l~~~l~~--~~~~~~I 240 (607)
T PRK11057 195 LLGLNDPLIQISS--------FDRP-NI-------------RYT----------LVEKFKPLDQLMRYVQE--QRGKSGI 240 (607)
T ss_pred HhCCCCeEEEECC--------CCCC-cc-------------eee----------eeeccchHHHHHHHHHh--cCCCCEE
Confidence 11 11111100 0000 00 000 00011122223333333 3678999
Q ss_pred EEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChh
Q psy11640 335 VFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRR 409 (552)
Q Consensus 335 VF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~ 409 (552)
|||+++..++.++..| .+..+||++++.+|.++++.|+. ++++|||+|+++++|||+|++++||+++ .|.|..
T Consensus 241 IFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~VLVaT~a~~~GIDip~V~~VI~~d-~P~s~~ 318 (607)
T PRK11057 241 IYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQIVVATVAFGMGINKPNVRFVVHFD-IPRNIE 318 (607)
T ss_pred EEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCEEEEechhhccCCCCCcCEEEEeC-CCCCHH
Confidence 9999999999999998 35789999999999999999996 8999999999999999999999999999 699999
Q ss_pred hHHHHhhhccccCCC
Q psy11640 410 QEAQRLGRILRAKKG 424 (552)
Q Consensus 410 q~~Qr~GRi~R~~~~ 424 (552)
.|+||+||+||.|..
T Consensus 319 ~y~Qr~GRaGR~G~~ 333 (607)
T PRK11057 319 SYYQETGRAGRDGLP 333 (607)
T ss_pred HHHHHhhhccCCCCC
Confidence 999999999998864
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=99.95 E-value=4.7e-27 Score=266.42 Aligned_cols=303 Identities=16% Similarity=0.189 Sum_probs=191.2
Q ss_pred hhccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---CCCCcEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---PMGCGIL 100 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~Iv 100 (552)
.+-.++++|||+|||+++..++.. .++++|+|+|+++|+.|+.++|++|... ...+..++|+.... ....+|+
T Consensus 39 g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~-g~~v~~~tGd~~~~~~~l~~~~Ii 117 (737)
T PRK02362 39 GKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEEL-GVRVGISTGDYDSRDEWLGDNDII 117 (737)
T ss_pred CCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcC-CCEEEEEeCCcCccccccCCCCEE
Confidence 345778899999999999776543 4678999999999999999999987643 45788888876432 2457999
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
|+|++.+...... ...++ .+++++|+||+|.... ..+|
T Consensus 118 V~Tpek~~~llr~------~~~~l--~~v~lvViDE~H~l~d-------------~~rg--------------------- 155 (737)
T PRK02362 118 VATSEKVDSLLRN------GAPWL--DDITCVVVDEVHLIDS-------------ANRG--------------------- 155 (737)
T ss_pred EECHHHHHHHHhc------Chhhh--hhcCEEEEECccccCC-------------Ccch---------------------
Confidence 9999976432111 11234 5789999999876321 0000
Q ss_pred cCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhhc
Q psy11640 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIG 260 (552)
Q Consensus 181 ~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~lig 260 (552)
+.+ | ....++....+....++||||+... .++..+++
T Consensus 156 ------------~~l---------------------e------~il~rl~~~~~~~qii~lSATl~n~----~~la~wl~ 192 (737)
T PRK02362 156 ------------PTL---------------------E------VTLAKLRRLNPDLQVVALSATIGNA----DELADWLD 192 (737)
T ss_pred ------------HHH---------------------H------HHHHHHHhcCCCCcEEEEcccCCCH----HHHHHHhC
Confidence 000 0 0011111112345689999998532 34444454
Q ss_pred ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccH
Q psy11640 261 PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNV 340 (552)
Q Consensus 261 ~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~ 340 (552)
...+...+... +.. ..+...-.. .+.. ... ....+.+...+..++..+ ..+.++||||+++
T Consensus 193 ~~~~~~~~rpv-------~l~-~~v~~~~~~----~~~~---~~~---~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~sr 253 (737)
T PRK02362 193 AELVDSEWRPI-------DLR-EGVFYGGAI----HFDD---SQR---EVEVPSKDDTLNLVLDTL-EEGGQCLVFVSSR 253 (737)
T ss_pred CCcccCCCCCC-------CCe-eeEecCCee----cccc---ccc---cCCCccchHHHHHHHHHH-HcCCCeEEEEeCH
Confidence 43333222110 000 001100000 0000 000 001112222222333322 3678999999998
Q ss_pred HHHHHHHHHc-----------------------------------------CCceEeCCCCHHHHHHHHHhhccCCCeeE
Q psy11640 341 FALKHYAVKM-----------------------------------------NKPYIYGPTSQSERIQILQNFKLNPKVNT 379 (552)
Q Consensus 341 ~~~~~l~~~L-----------------------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~~v 379 (552)
..++.++..| ++.++||++++.+|..+++.|++ |.++|
T Consensus 254 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~-G~i~V 332 (737)
T PRK02362 254 RNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD-RLIKV 332 (737)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc-CCCeE
Confidence 8776654433 46688999999999999999996 89999
Q ss_pred EEEeCccccccCCCCCCEEEE----ecc----CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 380 IFVSKVADTSFDLPEANVLIQ----ISS----HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 380 Lv~T~v~~~GlDlp~a~~VI~----~~~----~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
||+|+++++|+|+|+.++||. |+. .+.+..+|.||+||+||++.+.. ..++.++..
T Consensus 333 LvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~-----G~~ii~~~~ 396 (737)
T PRK02362 333 ISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY-----GEAVLLAKS 396 (737)
T ss_pred EEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC-----ceEEEEecC
Confidence 999999999999999988886 542 36678899999999999987543 345555544
No 46
>KOG0350|consensus
Probab=99.95 E-value=1.3e-27 Score=242.48 Aligned_cols=316 Identities=18% Similarity=0.247 Sum_probs=202.2
Q ss_pred eecCCCCchhHHHHHHHHhc-------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---------C-
Q psy11640 32 KKKRPSAGKSLVGVTACCTV-------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---------P- 94 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~-------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---------~- 94 (552)
+.+|||+|||+.....|... .-++|||+|+++|+.|.+++|.+|..-....|+.++|...-. +
T Consensus 188 V~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~ 267 (620)
T KOG0350|consen 188 VNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP 267 (620)
T ss_pred EecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC
Confidence 45999999999977766421 237999999999999999999999976666788888865311 1
Q ss_pred -CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCC
Q psy11640 95 -MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 173 (552)
Q Consensus 95 -~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 173 (552)
...+|+|+|++.|...... +.-+.-.+..++|+|||.|..
T Consensus 268 ~~~~DIlVaTPGRLVDHl~~-------~k~f~Lk~LrfLVIDEADRll-------------------------------- 308 (620)
T KOG0350|consen 268 ECRIDILVATPGRLVDHLNN-------TKSFDLKHLRFLVIDEADRLL-------------------------------- 308 (620)
T ss_pred ccccceEEcCchHHHHhccC-------CCCcchhhceEEEechHHHHH--------------------------------
Confidence 2349999999977421110 011222567889999975521
Q ss_pred CCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCC-------ccccceeecchhHHHHHHHh----hhccceeeec
Q psy11640 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRP-------EHIHEVHTIPAKMFRRVLTI----VQSHCKLGLT 242 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~-------~~~~E~~~~~~~~~~~~l~~----~~~~~~lgLT 242 (552)
...+++|+..+..-+... ..+...+......+...+.. .+.-..|.+|
T Consensus 309 ---------------------~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~s 367 (620)
T KOG0350|consen 309 ---------------------DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFS 367 (620)
T ss_pred ---------------------HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcc
Confidence 122344544332111111 00000000011112222222 1122356677
Q ss_pred ceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHH
Q psy11640 243 ATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYL 322 (552)
Q Consensus 243 ATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~L 322 (552)
||..+...+..+|..- -|.++..... ++ ..+.++ .....+. ..+...-|--.+..+
T Consensus 368 atLsqdP~Kl~~l~l~-~Prl~~v~~~------~~-------~ryslp-~~l~~~~---------vv~~~~~kpl~~~~l 423 (620)
T KOG0350|consen 368 ATLSQDPSKLKDLTLH-IPRLFHVSKP------LI-------GRYSLP-SSLSHRL---------VVTEPKFKPLAVYAL 423 (620)
T ss_pred hhhhcChHHHhhhhcC-CCceEEeecc------cc-------eeeecC-hhhhhce---------eecccccchHhHHHH
Confidence 7776655554444321 2322211100 00 011111 1111111 111111334455667
Q ss_pred HHHHhhcCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCC
Q psy11640 323 IAYHERRGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393 (552)
Q Consensus 323 l~~~~~~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp 393 (552)
|+.. ...++|+|+++.+.+..++..| ++..++|..+...|...++.|.. |++++||||+++++|+|+-
T Consensus 424 I~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcSD~laRGiDv~ 500 (620)
T KOG0350|consen 424 ITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICSDALARGIDVN 500 (620)
T ss_pred HHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEehhhhhcCCccc
Confidence 7665 7889999999999999988877 34568999999999999999996 8999999999999999999
Q ss_pred CCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 394 ~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
++++||+|+ +|.+-.+|+||+||.+|+|+. .++|+|++...
T Consensus 501 ~v~~VINYd-~P~~~ktyVHR~GRTARAgq~-------G~a~tll~~~~ 541 (620)
T KOG0350|consen 501 DVDNVINYD-PPASDKTYVHRAGRTARAGQD-------GYAITLLDKHE 541 (620)
T ss_pred ccceEeecC-CCchhhHHHHhhcccccccCC-------ceEEEeecccc
Confidence 999999999 799999999999999999994 67899988743
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=9.1e-27 Score=266.88 Aligned_cols=296 Identities=14% Similarity=0.125 Sum_probs=182.7
Q ss_pred hhccCeecCCCCchhHHHHHHHHh------------cCCcEEEEecCchhHHHHHHHHH-------hhh-----CCCCCc
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT------------VRKRALVLCNSGVSVEQWKHQFK-------LWS-----TADDSM 82 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~------------~~~~~LIl~Pt~~Lv~Qw~~e~~-------~~~-----~~~~~~ 82 (552)
.+-.++++|||+|||+++..++.. .+..+|+|+|+++|+.|+.+.+. .+. ..+...
T Consensus 47 g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~ 126 (876)
T PRK13767 47 GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIR 126 (876)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCee
Confidence 346789999999999998776541 12359999999999999987554 332 223457
Q ss_pred EEEEecCcccC------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcc
Q psy11640 83 ICRFTSEAKDK------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPED 156 (552)
Q Consensus 83 I~~~~g~~~~~------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~ 156 (552)
+.+.+|+.... ...++|+|||++++....... .....+ .++++||+||+|......
T Consensus 127 v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~----~~~~~l--~~l~~VVIDE~H~l~~~~------------ 188 (876)
T PRK13767 127 VAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP----KFREKL--RTVKWVIVDEIHSLAENK------------ 188 (876)
T ss_pred EEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh----hHHHHH--hcCCEEEEechhhhccCc------------
Confidence 78888876431 135799999999885322111 112234 678999999988632100
Q ss_pred cccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hc
Q psy11640 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QS 235 (552)
Q Consensus 157 ~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~ 235 (552)
. ..|. .....++.... ..
T Consensus 189 -R----------------------------------------------------------G~~l--~~~L~rL~~l~~~~ 207 (876)
T PRK13767 189 -R----------------------------------------------------------GVHL--SLSLERLEELAGGE 207 (876)
T ss_pred -c----------------------------------------------------------HHHH--HHHHHHHHHhcCCC
Confidence 0 0000 01112222222 24
Q ss_pred cceeeecceecccccchhhhhhhhcccccccCH--HHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCc
Q psy11640 236 HCKLGLTATLLREDDKIADLNFLIGPKLYEANW--LELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNP 313 (552)
Q Consensus 236 ~~~lgLTATp~r~d~~~~~L~~lig~~~~~~~~--~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~ 313 (552)
..++|||||+...+ .+..+++........ ..++...+..+... .+.++... .... ...
T Consensus 208 ~q~IglSATl~~~~----~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i-~v~~p~~~-----l~~~----------~~~ 267 (876)
T PRK13767 208 FVRIGLSATIEPLE----EVAKFLVGYEDDGEPRDCEIVDARFVKPFDI-KVISPVDD-----LIHT----------PAE 267 (876)
T ss_pred CeEEEEecccCCHH----HHHHHhcCccccCCCCceEEEccCCCccceE-EEeccCcc-----cccc----------ccc
Confidence 56899999974322 222222221110000 00111111111111 11222110 0000 000
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEE
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFV 382 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~ 382 (552)
.....+..++......+.++||||+++..++.++..| ++..+||++++++|..+++.|++ |++++|||
T Consensus 268 ~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~vLVa 346 (876)
T PRK13767 268 EISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKVVVS 346 (876)
T ss_pred hhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 0111112222222235679999999999999887766 36679999999999999999995 89999999
Q ss_pred eCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCC
Q psy11640 383 SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 383 T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
|+++++|||+|++++||+++ .|.|...|+||+||+||...
T Consensus 347 Ts~Le~GIDip~Vd~VI~~~-~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 347 STSLELGIDIGYIDLVVLLG-SPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred CChHHhcCCCCCCcEEEEeC-CCCCHHHHHHhcccCCCCCC
Confidence 99999999999999999999 59999999999999998643
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=5.7e-27 Score=263.17 Aligned_cols=282 Identities=13% Similarity=0.091 Sum_probs=181.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------------CC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------------PM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------------~~ 95 (552)
+-.+++||||+|||++++.++....+.+|||+|+++|+.++...+... + .....+.++.... ..
T Consensus 476 rDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~-G---I~Aa~L~s~~s~~eq~~ilr~l~s~~g 551 (1195)
T PLN03137 476 YDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQA-N---IPAASLSAGMEWAEQLEILQELSSEYS 551 (1195)
T ss_pred CCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhC-C---CeEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 457889999999999998888777889999999999998666665542 2 3344455543210 13
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHh-cCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQ-NQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~-~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
..+|+++|++.|.... .....+..+. ...+.+||+||||....
T Consensus 552 ~~~ILyvTPERL~~~d----~ll~~L~~L~~~~~LslIVIDEAHcVSq-------------------------------- 595 (1195)
T PLN03137 552 KYKLLYVTPEKVAKSD----SLLRHLENLNSRGLLARFVIDEAHCVSQ-------------------------------- 595 (1195)
T ss_pred CCCEEEEChHHhhcch----HHHHHHHhhhhccccceeccCcchhhhh--------------------------------
Confidence 4789999999885320 0001112221 23478999999987321
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhh
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~ 254 (552)
|-+||-. ++. ....+...++....++||||..... ..+
T Consensus 596 ----------------------WGhDFRp-------------dYr-----~L~~Lr~~fp~vPilALTATAT~~V--~eD 633 (1195)
T PLN03137 596 ----------------------WGHDFRP-------------DYQ-----GLGILKQKFPNIPVLALTATATASV--KED 633 (1195)
T ss_pred ----------------------cccchHH-------------HHH-----HHHHHHHhCCCCCeEEEEecCCHHH--HHH
Confidence 0000000 000 0011223345556789999975421 112
Q ss_pred hhhhh---cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCC
Q psy11640 255 LNFLI---GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD 331 (552)
Q Consensus 255 L~~li---g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~ 331 (552)
+...+ .+.++.. ++..+-....+. +.. ......+..++... ..+.
T Consensus 634 I~~~L~l~~~~vfr~--------Sf~RpNL~y~Vv-~k~----------------------kk~le~L~~~I~~~-~~~e 681 (1195)
T PLN03137 634 VVQALGLVNCVVFRQ--------SFNRPNLWYSVV-PKT----------------------KKCLEDIDKFIKEN-HFDE 681 (1195)
T ss_pred HHHHcCCCCcEEeec--------ccCccceEEEEe-ccc----------------------hhHHHHHHHHHHhc-ccCC
Confidence 22222 1222111 111111001110 000 00112222333221 1356
Q ss_pred eEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCC
Q psy11640 332 KTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG 406 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~ 406 (552)
..||||.++..++.++..| .+..+||+|++.+|..+++.|.. |+++|||||.++++|||+|++++||+++ .|.
T Consensus 682 sgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~VLVATdAFGMGIDkPDVR~VIHyd-lPk 759 (1195)
T PLN03137 682 CGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINIICATVAFGMGINKPDVRFVIHHS-LPK 759 (1195)
T ss_pred CceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcEEEEechhhcCCCccCCcEEEEcC-CCC
Confidence 8999999999999999988 46789999999999999999996 8999999999999999999999999999 699
Q ss_pred ChhhHHHHhhhccccCCCC
Q psy11640 407 SRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 407 s~~q~~Qr~GRi~R~~~~k 425 (552)
|...|.||+||+||.|...
T Consensus 760 SiEsYyQriGRAGRDG~~g 778 (1195)
T PLN03137 760 SIEGYHQECGRAGRDGQRS 778 (1195)
T ss_pred CHHHHHhhhcccCCCCCCc
Confidence 9999999999999988743
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.95 E-value=1.3e-26 Score=257.18 Aligned_cols=274 Identities=16% Similarity=0.148 Sum_probs=189.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCG 98 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~ 98 (552)
-.+++||||+|||++++.++....+.++||+|+.+|+.|+.+.+..+. ..+..++++.... ....+
T Consensus 30 dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~g----i~~~~~~s~~~~~~~~~~~~~l~~~~~~ 105 (591)
T TIGR01389 30 DVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAG----VAAAYLNSTLSAKEQQDIEKALVNGELK 105 (591)
T ss_pred CEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhCCCCC
Confidence 578999999999999988777777889999999999999999998753 3456666654221 13568
Q ss_pred EEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCc
Q psy11640 99 ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 178 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~ 178 (552)
|+++|++.+... .....+...++++||+||||.... ..+.|
T Consensus 106 il~~tpe~l~~~--------~~~~~l~~~~l~~iViDEaH~i~~-----------~g~~f-------------------- 146 (591)
T TIGR01389 106 LLYVAPERLEQD--------YFLNMLQRIPIALVAVDEAHCVSQ-----------WGHDF-------------------- 146 (591)
T ss_pred EEEEChhHhcCh--------HHHHHHhcCCCCEEEEeCCccccc-----------ccCcc--------------------
Confidence 999999988542 233455567899999999987321 00000
Q ss_pred cccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhh
Q psy11640 179 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFL 258 (552)
Q Consensus 179 ~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~l 258 (552)
-|.| .....+...++....++||||+.... ..++...
T Consensus 147 -------------rp~y----------------------------~~l~~l~~~~~~~~vi~lTAT~~~~~--~~~i~~~ 183 (591)
T TIGR01389 147 -------------RPEY----------------------------QRLGSLAERFPQVPRIALTATADAET--RQDIREL 183 (591)
T ss_pred -------------HHHH----------------------------HHHHHHHHhCCCCCEEEEEeCCCHHH--HHHHHHH
Confidence 0000 01111233344445899999985431 1122222
Q ss_pred hc---ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 259 IG---PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 259 ig---~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
++ +..+. .++..+-....+ .....+...+..++..+ .+.++||
T Consensus 184 l~~~~~~~~~--------~~~~r~nl~~~v------------------------~~~~~~~~~l~~~l~~~--~~~~~II 229 (591)
T TIGR01389 184 LRLADANEFI--------TSFDRPNLRFSV------------------------VKKNNKQKFLLDYLKKH--RGQSGII 229 (591)
T ss_pred cCCCCCCeEe--------cCCCCCCcEEEE------------------------EeCCCHHHHHHHHHHhc--CCCCEEE
Confidence 21 11110 000000000000 01123344445555544 4789999
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhh
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 410 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q 410 (552)
||.++..++.++..| ++..+||+++..+|..+++.|.. |+++|||+|+++++|||+|++++||+++ .|.|...
T Consensus 230 f~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~vlVaT~a~~~GID~p~v~~VI~~~-~p~s~~~ 307 (591)
T TIGR01389 230 YASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKVMVATNAFGMGIDKPNVRFVIHYD-MPGNLES 307 (591)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEEEechhhccCcCCCCCEEEEcC-CCCCHHH
Confidence 999999999999988 34679999999999999999996 8999999999999999999999999999 6999999
Q ss_pred HHHHhhhccccCCC
Q psy11640 411 EAQRLGRILRAKKG 424 (552)
Q Consensus 411 ~~Qr~GRi~R~~~~ 424 (552)
|.|++||+||.|..
T Consensus 308 y~Q~~GRaGR~G~~ 321 (591)
T TIGR01389 308 YYQEAGRAGRDGLP 321 (591)
T ss_pred HhhhhccccCCCCC
Confidence 99999999998763
No 50
>KOG0333|consensus
Probab=99.95 E-value=5.1e-27 Score=239.28 Aligned_cols=319 Identities=16% Similarity=0.178 Sum_probs=202.2
Q ss_pred hccCeecCCCCchhHHHHHHHH----h-----------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEE-EEecCcc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----T-----------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMIC-RFTSEAK 91 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~-----------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~-~~~g~~~ 91 (552)
+--+||+-||+|||+..+..+. . .+..++||+||++|++|..+|-.+|+..-..++. ++.|-..
T Consensus 283 rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~ 362 (673)
T KOG0333|consen 283 RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSF 362 (673)
T ss_pred CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccch
Confidence 3458999999999977665432 1 1346999999999999999999998865444554 4444443
Q ss_pred cC-----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhh
Q psy11640 92 DK-----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQ 166 (552)
Q Consensus 92 ~~-----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 166 (552)
+. ..+++|+|+|+..|..... -.+|-.....++|+|||.++. +.-.-.++...
T Consensus 363 EEq~fqls~gceiviatPgrLid~Le--------nr~lvl~qctyvvldeadrmi--------------DmgfE~dv~~i 420 (673)
T KOG0333|consen 363 EEQGFQLSMGCEIVIATPGRLIDSLE--------NRYLVLNQCTYVVLDEADRMI--------------DMGFEPDVQKI 420 (673)
T ss_pred hhhhhhhhccceeeecCchHHHHHHH--------HHHHHhccCceEeccchhhhh--------------cccccHHHHHH
Confidence 32 2679999999997743211 122334678899999875421 11100111100
Q ss_pred hhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhcc----ceeeec
Q psy11640 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH----CKLGLT 242 (552)
Q Consensus 167 ~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~----~~lgLT 242 (552)
+.--|..+. +...........+.+.+... ..+.+|
T Consensus 421 L~~mPssn~-----------------------------------------k~~tde~~~~~~~~~~~~~~k~yrqT~mft 459 (673)
T KOG0333|consen 421 LEQMPSSNA-----------------------------------------KPDTDEKEGEERVRKNFSSSKKYRQTVMFT 459 (673)
T ss_pred HHhCCcccc-----------------------------------------CCCccchhhHHHHHhhcccccceeEEEEEe
Confidence 000000000 00000111223333333322 235567
Q ss_pred ceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHH
Q psy11640 243 ATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYL 322 (552)
Q Consensus 243 ATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~L 322 (552)
||.... ...| ..+|+..+.++.+-..-.+. ....+.+..+..+.|+..|.++
T Consensus 460 atm~p~-------------------verl-ar~ylr~pv~vtig~~gk~~--------~rveQ~v~m~~ed~k~kkL~ei 511 (673)
T KOG0333|consen 460 ATMPPA-------------------VERL-ARSYLRRPVVVTIGSAGKPT--------PRVEQKVEMVSEDEKRKKLIEI 511 (673)
T ss_pred cCCChH-------------------HHHH-HHHHhhCCeEEEeccCCCCc--------cchheEEEEecchHHHHHHHHH
Confidence 764211 0111 12333332222211100000 0011122233456678888888
Q ss_pred HHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCE
Q psy11640 323 IAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANV 397 (552)
Q Consensus 323 l~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~ 397 (552)
++.. -...+|||+++...++.|++.| ++..+||+-++++|..+|+.|+. +..+|||||+++++|||+|++++
T Consensus 512 l~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~-~t~dIlVaTDvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 512 LESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE-GTGDILVATDVAGRGIDIPNVSL 588 (673)
T ss_pred HHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh-cCCCEEEEecccccCCCCCccce
Confidence 8765 4568999999999999999999 46789999999999999999996 79999999999999999999999
Q ss_pred EEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHH
Q psy11640 398 LIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS 448 (552)
Q Consensus 398 VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~ 448 (552)
||+|+ ...|...|.|||||.||+|+. ..+.+|++...-+-+|.
T Consensus 589 Vinyd-maksieDYtHRIGRTgRAGk~-------GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 589 VINYD-MAKSIEDYTHRIGRTGRAGKS-------GTAISFLTPADTAVFYD 631 (673)
T ss_pred eeecc-hhhhHHHHHHHhccccccccC-------ceeEEEeccchhHHHHH
Confidence 99999 599999999999999999985 44677888765444443
No 51
>KOG0340|consensus
Probab=99.95 E-value=2.2e-26 Score=225.05 Aligned_cols=300 Identities=16% Similarity=0.210 Sum_probs=205.7
Q ss_pred hccCeecCCCCchhHHHHHHHHh-c-----CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc------CCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-V-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD------KPM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~------~~~ 95 (552)
+-|+|.+-||+|||......+.. . +--+||+.||++|+.|..++|......-..+++++.|+..- -..
T Consensus 45 rdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~ 124 (442)
T KOG0340|consen 45 RDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD 124 (442)
T ss_pred cccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc
Confidence 56899999999999987776653 2 23489999999999999999987665556688888887532 135
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|++.+......... ...+. .....++++|||.|..+. -|
T Consensus 125 rPHvVvatPGRlad~l~sn~~---~~~~~-~~rlkflVlDEADrvL~~-------------~f----------------- 170 (442)
T KOG0340|consen 125 RPHVVVATPGRLADHLSSNLG---VCSWI-FQRLKFLVLDEADRVLAG-------------CF----------------- 170 (442)
T ss_pred CCCeEecCccccccccccCCc---cchhh-hhceeeEEecchhhhhcc-------------ch-----------------
Confidence 689999999988643221100 11121 257889999987653320 00
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhcc-ceeeecceecccccchhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH-CKLGLTATLLREDDKIAD 254 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~-~~lgLTATp~r~d~~~~~ 254 (552)
......+...++.+ ..+.+|||... .+..
T Consensus 171 -----------------------------------------------~d~L~~i~e~lP~~RQtLlfSATitd---~i~q 200 (442)
T KOG0340|consen 171 -----------------------------------------------PDILEGIEECLPKPRQTLLFSATITD---TIKQ 200 (442)
T ss_pred -----------------------------------------------hhHHhhhhccCCCccceEEEEeehhh---HHHH
Confidence 00111133344444 67899999741 2222
Q ss_pred hhhhhcccccccCHHHHHHcCCCcceEEEEEE--cCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhh-cCC
Q psy11640 255 LNFLIGPKLYEANWLELQKRGFIARVQCAEVW--CPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHER-RGD 331 (552)
Q Consensus 255 L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~--~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~-~g~ 331 (552)
+ ++-..- .++ ....++. ++..+..+..|+-. ....|...+..+|+..++ ...
T Consensus 201 l---~~~~i~---------k~~---a~~~e~~~~vstvetL~q~yI~~----------~~~vkdaYLv~~Lr~~~~~~~~ 255 (442)
T KOG0340|consen 201 L---FGCPIT---------KSI---AFELEVIDGVSTVETLYQGYILV----------SIDVKDAYLVHLLRDFENKENG 255 (442)
T ss_pred h---hcCCcc---------ccc---ceEEeccCCCCchhhhhhheeec----------chhhhHHHHHHHHhhhhhccCc
Confidence 2 111100 000 0000110 11112223333322 233556667778877655 567
Q ss_pred eEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCC
Q psy11640 332 KTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG 406 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~ 406 (552)
.++||+++...++.|...| .+..+|+.|++.+|...|.+|++ +..++||||+|+++|+|||.++.||+++ .|.
T Consensus 256 simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~iliaTDVAsRGLDIP~V~LVvN~d-iPr 333 (442)
T KOG0340|consen 256 SIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARILIATDVASRGLDIPTVELVVNHD-IPR 333 (442)
T ss_pred eEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccEEEEechhhcCCCCCceeEEEecC-CCC
Confidence 9999999999999999888 46789999999999999999997 6999999999999999999999999999 699
Q ss_pred ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhh
Q psy11640 407 SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEM 445 (552)
Q Consensus 407 s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~ 445 (552)
.|..|+||+||..|+|+.+. ..++|++-.+|-
T Consensus 334 ~P~~yiHRvGRtARAGR~G~-------aiSivt~rDv~l 365 (442)
T KOG0340|consen 334 DPKDYIHRVGRTARAGRKGM-------AISIVTQRDVEL 365 (442)
T ss_pred CHHHHHHhhcchhcccCCcc-------eEEEechhhHHH
Confidence 99999999999999998653 477777655543
No 52
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.94 E-value=4.4e-27 Score=252.80 Aligned_cols=339 Identities=15% Similarity=0.144 Sum_probs=226.2
Q ss_pred hhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCCCc
Q psy11640 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSM 82 (552)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~ 82 (552)
+-||..+-.+--+-=.| -.++.++||+||+|||.+|+++|.++ .+++|+|+.+..|++|-..+|..|... ...
T Consensus 167 RyyQ~~AI~rv~Eaf~~-g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSK-GQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-GTK 244 (875)
T ss_pred hHHHHHHHHHHHHHHhc-CCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-ccc
Confidence 55776665544333233 34459999999999999999999754 479999999999999999999999843 223
Q ss_pred EEEEecCcccCCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchh
Q psy11640 83 ICRFTSEAKDKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKD 162 (552)
Q Consensus 83 I~~~~g~~~~~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d 162 (552)
+..+.+...+ ..+.|.|+||+++........ .....+....|||||+|||||+
T Consensus 245 ~n~i~~~~~~--~s~~i~lsTyqt~~~~~~~~~---~~~~~f~~g~FDlIvIDEaHRg---------------------- 297 (875)
T COG4096 245 MNKIEDKKGD--TSSEIYLSTYQTMTGRIEQKE---DEYRRFGPGFFDLIVIDEAHRG---------------------- 297 (875)
T ss_pred eeeeecccCC--cceeEEEeehHHHHhhhhccc---cccccCCCCceeEEEechhhhh----------------------
Confidence 3333322221 257899999998865422221 2233444567999999977764
Q ss_pred hhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeec
Q psy11640 163 YRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLT 242 (552)
Q Consensus 163 ~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLT 242 (552)
.++.++.++.++.+ .++|||
T Consensus 298 -----------------------------------------------------------i~~~~~~I~dYFdA-~~~gLT 317 (875)
T COG4096 298 -----------------------------------------------------------IYSEWSSILDYFDA-ATQGLT 317 (875)
T ss_pred -----------------------------------------------------------HHhhhHHHHHHHHH-HHHhhc
Confidence 33445567888865 477889
Q ss_pred ceecccccchhhhhhhh-cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHH--------H-HHHhhh-hhhh------
Q psy11640 243 ATLLREDDKIADLNFLI-GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFY--------R-EYLVCK-TSKR------ 305 (552)
Q Consensus 243 ATp~r~d~~~~~L~~li-g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~--------~-~y~~~~-~~~~------ 305 (552)
|||...- ..+-+.+| |..+|.+++.+.++.|+|+|+....+.+..+.+.. . .+-..- ....
T Consensus 318 ATP~~~~--d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d 395 (875)
T COG4096 318 ATPKETI--DRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARD 395 (875)
T ss_pred cCccccc--ccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccc
Confidence 9996432 22334455 99999999999999999999988776655432211 0 000000 0000
Q ss_pred hhHHhcCchhHH-HHHHHHHHHhh--cC---CeEEEEeccHHHHHHHHHHcC----------CceEeCCCCHHHHHHHHH
Q psy11640 306 LLLYVMNPNKYR-ATQYLIAYHER--RG---DKTIVFSDNVFALKHYAVKMN----------KPYIYGPTSQSERIQILQ 369 (552)
Q Consensus 306 ~~~~~~~~~K~~-~l~~Ll~~~~~--~g---~kvIVF~~~~~~~~~l~~~L~----------~~~i~G~~~~~eR~~il~ 369 (552)
.-.....+...+ ++..+-.+... .| .|+||||.+..|++.+...|. +..|+|+.. +-+..++
T Consensus 396 ~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id 473 (875)
T COG4096 396 FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALID 473 (875)
T ss_pred cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHH
Confidence 000011122223 33333344432 33 599999999999999999882 345777765 4466788
Q ss_pred hhccCC-CeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCC---CCceeEEEEEEecC
Q psy11640 370 NFKLNP-KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAI---AEEYNAFFYTLVSQ 440 (552)
Q Consensus 370 ~F~~~g-~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~---~~~~~v~vy~lvs~ 440 (552)
.|..+. -.+|.++++++++|+|+|.|-++|++. +..|...|.|++||+-|..+.-. .......|++++..
T Consensus 474 ~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r-~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~ 547 (875)
T COG4096 474 NFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDR-KVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDN 547 (875)
T ss_pred HHHhcCCCCceEEehhhhhcCCCchheeeeeehh-hhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhh
Confidence 886533 455666679999999999999999998 69999999999999999876421 11335667777754
No 53
>KOG0328|consensus
Probab=99.94 E-value=1.7e-26 Score=219.38 Aligned_cols=292 Identities=16% Similarity=0.194 Sum_probs=206.4
Q ss_pred ccCeecCCCCchhHHHH-HHHH-----hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcc--c----CCCC
Q psy11640 29 KKKKKKRPSAGKSLVGV-TACC-----TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK--D----KPMG 96 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai-~~i~-----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~--~----~~~~ 96 (552)
--++-+..|+|||.+.. .++- ...-.+|||.||++|+.|..+.+....+.-...+....|+.. + -..+
T Consensus 66 dViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G 145 (400)
T KOG0328|consen 66 DVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYG 145 (400)
T ss_pred ceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhccc
Confidence 34556899999997633 2221 123579999999999999999999877654445555554432 1 1256
Q ss_pred CcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCC
Q psy11640 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 176 (552)
Q Consensus 97 ~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r 176 (552)
.+|+.+|++.+....++ ..|+-....++|+|||.....
T Consensus 146 ~hvVsGtPGrv~dmikr--------~~L~tr~vkmlVLDEaDemL~---------------------------------- 183 (400)
T KOG0328|consen 146 QHVVSGTPGRVLDMIKR--------RSLRTRAVKMLVLDEADEMLN---------------------------------- 183 (400)
T ss_pred ceEeeCCCchHHHHHHh--------ccccccceeEEEeccHHHHHH----------------------------------
Confidence 78999999966432111 235557899999997522100
Q ss_pred CccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhh
Q psy11640 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 177 ~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L 255 (552)
. -.....|. ++..++ ....+.+|||...+ +
T Consensus 184 ----------------------------------------k--gfk~Qiyd-iyr~lp~~~Qvv~~SATlp~e---i--- 214 (400)
T KOG0328|consen 184 ----------------------------------------K--GFKEQIYD-IYRYLPPGAQVVLVSATLPHE---I--- 214 (400)
T ss_pred ----------------------------------------h--hHHHHHHH-HHHhCCCCceEEEEeccCcHH---H---
Confidence 0 11223333 566666 55667889997421 1
Q ss_pred hhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCch-hHHHHHHHHHHHhhcCCeEE
Q psy11640 256 NFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPN-KYRATQYLIAYHERRGDKTI 334 (552)
Q Consensus 256 ~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~-K~~~l~~Ll~~~~~~g~kvI 334 (552)
.++.+.=.-.|+.+..-.-.++.|..++|... +...+ |+..|.+|...+ .-.+++
T Consensus 215 -------------lemt~kfmtdpvrilvkrdeltlEgIKqf~v~---------ve~EewKfdtLcdLYd~L--tItQav 270 (400)
T KOG0328|consen 215 -------------LEMTEKFMTDPVRILVKRDELTLEGIKQFFVA---------VEKEEWKFDTLCDLYDTL--TITQAV 270 (400)
T ss_pred -------------HHHHHHhcCCceeEEEecCCCchhhhhhheee---------echhhhhHhHHHHHhhhh--ehheEE
Confidence 12221111223333333444555555555432 22233 788888888877 677999
Q ss_pred EEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChh
Q psy11640 335 VFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRR 409 (552)
Q Consensus 335 VF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~ 409 (552)
|||+++..++.|.+.+ .+..+||+|+++||..++.+|++ |+.+||++|++-++|+|+|.+++||+|| .|.++.
T Consensus 271 IFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~SrvLitTDVwaRGiDv~qVslviNYD-LP~nre 348 (400)
T KOG0328|consen 271 IFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRVLITTDVWARGIDVQQVSLVINYD-LPNNRE 348 (400)
T ss_pred EEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceEEEEechhhccCCcceeEEEEecC-CCccHH
Confidence 9999999999999988 46789999999999999999996 8999999999999999999999999999 699999
Q ss_pred hHHHHhhhccccCCCCCCCceeEEEEEEecCCchh
Q psy11640 410 QEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444 (552)
Q Consensus 410 q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e 444 (552)
.|+||+||.||-|+. .++.+||..+.++
T Consensus 349 ~YIHRIGRSGRFGRk-------GvainFVk~~d~~ 376 (400)
T KOG0328|consen 349 LYIHRIGRSGRFGRK-------GVAINFVKSDDLR 376 (400)
T ss_pred HHhhhhccccccCCc-------ceEEEEecHHHHH
Confidence 999999999999883 6688999876543
No 54
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.3e-25 Score=238.80 Aligned_cols=328 Identities=15% Similarity=0.174 Sum_probs=221.0
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PM 95 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~ 95 (552)
..++.+-.|||||+||+.++. ..+.++.+++||..|++|.++.|.+|+..-...|..++|..+.. ..
T Consensus 285 ~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G 364 (677)
T COG1200 285 NRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG 364 (677)
T ss_pred HHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC
Confidence 457889999999999887665 56789999999999999999999999975467899999987542 14
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|...+.- .....+.+|+|+||=|| ||.
T Consensus 365 ~~~ivVGTHALiQd-------------~V~F~~LgLVIiDEQHR------------------FGV--------------- 398 (677)
T COG1200 365 EIDIVVGTHALIQD-------------KVEFHNLGLVIIDEQHR------------------FGV--------------- 398 (677)
T ss_pred CCCEEEEcchhhhc-------------ceeecceeEEEEecccc------------------ccH---------------
Confidence 58999999987742 12237899999996433 433
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~ 254 (552)
.+...+...-. .++.|.+||||+...-.
T Consensus 399 ------------------------------------------------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--- 427 (677)
T COG1200 399 ------------------------------------------------HQRLALREKGEQNPHVLVMTATPIPRTLA--- 427 (677)
T ss_pred ------------------------------------------------HHHHHHHHhCCCCCcEEEEeCCCchHHHH---
Confidence 33333444444 58899999999854211
Q ss_pred hhhhhcccccccCHHHHHHcCCCcc--eEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCe
Q psy11640 255 LNFLIGPKLYEANWLELQKRGFIAR--VQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332 (552)
Q Consensus 255 L~~lig~~~~~~~~~el~~~g~l~~--~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~k 332 (552)
...+|..- .+ .+ .-+++ ..+...|++. ..+-+++..+.+.. ..|++
T Consensus 428 -lt~fgDld----vS-~I--dElP~GRkpI~T~~i~~-----------------------~~~~~v~e~i~~ei-~~GrQ 475 (677)
T COG1200 428 -LTAFGDLD----VS-II--DELPPGRKPITTVVIPH-----------------------ERRPEVYERIREEI-AKGRQ 475 (677)
T ss_pred -HHHhcccc----ch-hh--ccCCCCCCceEEEEecc-----------------------ccHHHHHHHHHHHH-HcCCE
Confidence 11122110 00 00 00111 1112223221 11223333333333 58999
Q ss_pred EEEEeccHHHHH--------HHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCE
Q psy11640 333 TIVFSDNVFALK--------HYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANV 397 (552)
Q Consensus 333 vIVF~~~~~~~~--------~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~ 397 (552)
+.|.|+-++.-+ .+...| ++..+||.|+.+|.++++++|++ ++++|||+|.|.++|||+|+|++
T Consensus 476 aY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~-~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 476 AYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE-GEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred EEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc-CCCcEEEEeeEEEecccCCCCeE
Confidence 999998654332 233333 47789999999999999999996 89999999999999999999999
Q ss_pred EEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEeec---cccccc-
Q psy11640 398 LIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITK---LAGMEE- 473 (552)
Q Consensus 398 VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~~---~~~~~~- 473 (552)
+|+.+..---..|..|-.||+||.... .+++-+....+ ...+++|.+.+.+....|.+.+. +.|..+
T Consensus 555 MVIe~AERFGLaQLHQLRGRVGRG~~q-------SyC~Ll~~~~~--~~~a~~RL~im~~t~DGF~IAE~DLklRGpGe~ 625 (677)
T COG1200 555 MVIENAERFGLAQLHQLRGRVGRGDLQ-------SYCVLLYKPPL--SEVAKQRLKIMRETTDGFVIAEEDLKLRGPGEL 625 (677)
T ss_pred EEEechhhhhHHHHHHhccccCCCCcc-------eEEEEEeCCCC--ChhHHHHHHHHHhcCCcceehhhhHhccCCccc
Confidence 999874334588999999999997652 22332222221 14577889999888888877653 223222
Q ss_pred -----c--cCCCCCChHHHHHHHHHHHhc
Q psy11640 474 -----E--RGMHYSTRDEQGQLLQQVLAA 495 (552)
Q Consensus 474 -----~--~~~~~~~~~~~~~ll~~~~~~ 495 (552)
+ +++.+.+..+..++|..+...
T Consensus 626 lG~rQSG~~~f~~Adl~~D~~ile~ar~~ 654 (677)
T COG1200 626 LGTRQSGLPEFRVADLVRDYDILEEARKD 654 (677)
T ss_pred cCCcccCCcceEEeeHHhhHHHHHHHHHH
Confidence 2 456777777777777665543
No 55
>KOG0338|consensus
Probab=99.94 E-value=5.5e-26 Score=230.88 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=195.1
Q ss_pred CeecCCCCchhHHHHHHHHh-----cC----CcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------CC
Q psy11640 31 KKKKRPSAGKSLVGVTACCT-----VR----KRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------PM 95 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~-----~~----~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~~ 95 (552)
.+++.||+|||..++.++.. .. -++||||||++|+-|....+++...+....+++..|+-.-+ ..
T Consensus 222 ca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs 301 (691)
T KOG0338|consen 222 CACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS 301 (691)
T ss_pred hheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh
Confidence 36789999999998877652 11 37999999999999988887765544446788877775322 14
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
.++|+|+|++.|......+ ..+.-.++.++|+|||.|+.. .+|
T Consensus 302 ~PDIVIATPGRlIDHlrNs-------~sf~ldsiEVLvlDEADRMLe-------------egF----------------- 344 (691)
T KOG0338|consen 302 RPDIVIATPGRLIDHLRNS-------PSFNLDSIEVLVLDEADRMLE-------------EGF----------------- 344 (691)
T ss_pred CCCEEEecchhHHHHhccC-------CCccccceeEEEechHHHHHH-------------HHH-----------------
Confidence 6899999999664221111 112225677899998755321 011
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~ 254 (552)
+.....++... .....+++|||... ...+
T Consensus 345 -----------------------------------------------ademnEii~lcpk~RQTmLFSATMte---eVkd 374 (691)
T KOG0338|consen 345 -----------------------------------------------ADEMNEIIRLCPKNRQTMLFSATMTE---EVKD 374 (691)
T ss_pred -----------------------------------------------HHHHHHHHHhccccccceeehhhhHH---HHHH
Confidence 01111122222 34567889999742 2333
Q ss_pred hhhhhcccccccCHHHHHHcCCCcceEEEEEEcCC----CHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcC
Q psy11640 255 LNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPM----SPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRG 330 (552)
Q Consensus 255 L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l----~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g 330 (552)
| +.-..-.|+. ++++. .+...++|+...... ...+-..+..|+... -.
T Consensus 375 L----------------~slSL~kPvr---ifvd~~~~~a~~LtQEFiRIR~~r-------e~dRea~l~~l~~rt--f~ 426 (691)
T KOG0338|consen 375 L----------------ASLSLNKPVR---IFVDPNKDTAPKLTQEFIRIRPKR-------EGDREAMLASLITRT--FQ 426 (691)
T ss_pred H----------------HHhhcCCCeE---EEeCCccccchhhhHHHheecccc-------ccccHHHHHHHHHHh--cc
Confidence 3 2222222322 22221 123345555432111 112334556666654 25
Q ss_pred CeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC
Q psy11640 331 DKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG 405 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~ 405 (552)
+++|||+.+...++.+.-.| ++.-+||++++.+|.+.|+.|++ .+++|||+|+++++||||+.+.+||+|. .|
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidvLiaTDvAsRGLDI~gV~tVINy~-mP 504 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDVLIATDVASRGLDIEGVQTVINYA-MP 504 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCEEEEechhhccCCccceeEEEecc-Cc
Confidence 68999999999999888777 35679999999999999999996 8999999999999999999999999999 59
Q ss_pred CChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 406 GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 406 ~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
.+...|+||+||..|+|+. .+-.+||..+
T Consensus 505 ~t~e~Y~HRVGRTARAGRa-------GrsVtlvgE~ 533 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRA-------GRSVTLVGES 533 (691)
T ss_pred hhHHHHHHHhhhhhhcccC-------cceEEEeccc
Confidence 9999999999999999884 3457788776
No 56
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.94 E-value=2.7e-25 Score=247.99 Aligned_cols=318 Identities=14% Similarity=0.114 Sum_probs=207.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCc--cc--CCCCC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA--KD--KPMGC 97 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~--~~--~~~~~ 97 (552)
+++.++++|||+|||++++.++.. ...++|||||+.+|+.||.++|..+... .+....+.. .. .....
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~---~~~~~~s~~~L~~~l~~~~~ 339 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD---CAERIESIAELKRLLEKDDG 339 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC---CCcccCCHHHHHHHHhCCCC
Confidence 578999999999999998877653 2357999999999999999999998731 111111100 00 11246
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCc-ccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQE-WGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 176 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~-~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r 176 (552)
.|+|+|++.+..... .....+.... ..+||+|||||..
T Consensus 340 ~iivtTiQk~~~~~~------~~~~~~~~~~~~~lvIvDEaHrs~----------------------------------- 378 (667)
T TIGR00348 340 GIIITTIQKFDKKLK------EEEEKFPVDRKEVVVIFDEAHRSQ----------------------------------- 378 (667)
T ss_pred CEEEEEhHHhhhhHh------hhhhccCCCCCCEEEEEEcCcccc-----------------------------------
Confidence 899999999864210 1111111111 2389999777642
Q ss_pred CccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHH-Hhhhccceeeecceecccccc-hhh
Q psy11640 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL-TIVQSHCKLGLTATLLREDDK-IAD 254 (552)
Q Consensus 177 ~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l-~~~~~~~~lgLTATp~r~d~~-~~~ 254 (552)
+..+...+ ..++..+.|||||||.+.++. ...
T Consensus 379 ----------------------------------------------~~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~ 412 (667)
T TIGR00348 379 ----------------------------------------------YGELAKNLKKALKNASFFGFTGTPIFKKDRDTSL 412 (667)
T ss_pred ----------------------------------------------chHHHHHHHhhCCCCcEEEEeCCCcccccccccc
Confidence 23333333 567778999999999986433 222
Q ss_pred hh-hhhcccccccCHHHHHHcCCCcceEEEEEEcCC--CHHH----HHHHHhhhhh----------hh----hhHHhcCc
Q psy11640 255 LN-FLIGPKLYEANWLELQKRGFIARVQCAEVWCPM--SPEF----YREYLVCKTS----------KR----LLLYVMNP 313 (552)
Q Consensus 255 L~-~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l--~~~~----~~~y~~~~~~----------~~----~~~~~~~~ 313 (552)
.+ ..+|+.++.++..+++++|++.|+.+..+.+.. +.+. ..++...... ++ ......++
T Consensus 413 ~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 492 (667)
T TIGR00348 413 TFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNE 492 (667)
T ss_pred cccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcCh
Confidence 22 336788999999999999999998776554422 2221 1122111000 00 00112334
Q ss_pred hhHHHH-HHHHHHHh----hcCCeEEEEeccHHHHHHHHHHcC----------CceEeCCCCHH----------------
Q psy11640 314 NKYRAT-QYLIAYHE----RRGDKTIVFSDNVFALKHYAVKMN----------KPYIYGPTSQS---------------- 362 (552)
Q Consensus 314 ~K~~~l-~~Ll~~~~----~~g~kvIVF~~~~~~~~~l~~~L~----------~~~i~G~~~~~---------------- 362 (552)
..+..+ ..+++.+. ..+.|++|||.++.++..+...|. ...++|+.+..
T Consensus 493 ~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~ 572 (667)
T TIGR00348 493 DRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDK 572 (667)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhcccccc
Confidence 444433 34443321 235799999999999988887761 12455554322
Q ss_pred -----HHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhcccc-CCCCCCCceeEEEEE
Q psy11640 363 -----ERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA-KKGAIAEEYNAFFYT 436 (552)
Q Consensus 363 -----eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~-~~~k~~~~~~v~vy~ 436 (552)
....++++|++++.+++||+++++.+|+|.|.++++++.. |..+. .++|++||+.|. .++|. .+.|++
T Consensus 573 ~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK-plk~h-~LlQai~R~nR~~~~~K~----~g~IvD 646 (667)
T TIGR00348 573 SDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK-PLKYH-GLLQAIARTNRIDGKDKT----FGLIVD 646 (667)
T ss_pred chhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec-ccccc-HHHHHHHHhccccCCCCC----CEEEEE
Confidence 2347999998656899999999999999999999999877 45554 478999999994 66665 578888
Q ss_pred EecC
Q psy11640 437 LVSQ 440 (552)
Q Consensus 437 lvs~ 440 (552)
++..
T Consensus 647 y~g~ 650 (667)
T TIGR00348 647 YRGL 650 (667)
T ss_pred CcCh
Confidence 8874
No 57
>KOG0342|consensus
Probab=99.94 E-value=8.5e-26 Score=229.46 Aligned_cols=283 Identities=19% Similarity=0.213 Sum_probs=186.8
Q ss_pred ccCeecCCCCchhHHHHHHHHh----------cCCcEEEEecCchhHHHHHHHHHhhhCCC-CCcEEEEecCcccC----
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT----------VRKRALVLCNSGVSVEQWKHQFKLWSTAD-DSMICRFTSEAKDK---- 93 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~----------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~-~~~I~~~~g~~~~~---- 93 (552)
.-++-+-||+|||++++..+.. .+-.+||||||++|+.|...|.+..+... ...+.+..|+....
T Consensus 121 Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~ 200 (543)
T KOG0342|consen 121 DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD 200 (543)
T ss_pred cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH
Confidence 4567799999999998876542 12359999999999999999998777543 45666666665321
Q ss_pred --CCCCcEEEEccccccc-ccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcC
Q psy11640 94 --PMGCGILVTTYSMISH-TQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170 (552)
Q Consensus 94 --~~~~~IvItTy~~l~~-~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~ 170 (552)
...+.|+|+|++.|.. ..+.+ .++ ..+..++|+|||.+.. +....+
T Consensus 201 kl~k~~niliATPGRLlDHlqNt~-------~f~-~r~~k~lvlDEADrlL--------------d~GF~~--------- 249 (543)
T KOG0342|consen 201 KLVKGCNILIATPGRLLDHLQNTS-------GFL-FRNLKCLVLDEADRLL--------------DIGFEE--------- 249 (543)
T ss_pred HhhccccEEEeCCchHHhHhhcCC-------cch-hhccceeEeecchhhh--------------hcccHH---------
Confidence 1468999999997632 11111 011 2345789999874421 111000
Q ss_pred CCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccc
Q psy11640 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLRED 249 (552)
Q Consensus 171 ~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d 249 (552)
+ ..+++..++ ....+.+|||...
T Consensus 250 ----------------------------------------------d--------i~~Ii~~lpk~rqt~LFSAT~~~-- 273 (543)
T KOG0342|consen 250 ----------------------------------------------D--------VEQIIKILPKQRQTLLFSATQPS-- 273 (543)
T ss_pred ----------------------------------------------H--------HHHHHHhccccceeeEeeCCCcH--
Confidence 1 122444444 4456889999642
Q ss_pred cchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhc
Q psy11640 250 DKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERR 329 (552)
Q Consensus 250 ~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~ 329 (552)
+..++. .+.+.+ .+..+-|.-..+. + ......+-...+....++.++..+|+.+...
T Consensus 274 -kV~~l~-----------------~~~L~~-d~~~v~~~d~~~~--~--The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~ 330 (543)
T KOG0342|consen 274 -KVKDLA-----------------RGALKR-DPVFVNVDDGGER--E--THERLEQGYVVAPSDSRFSLLYTFLKKNIKR 330 (543)
T ss_pred -HHHHHH-----------------HHhhcC-CceEeecCCCCCc--c--hhhcccceEEeccccchHHHHHHHHHHhcCC
Confidence 222221 122222 1111111100000 0 0000001111223344567777788877432
Q ss_pred CCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH 404 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~ 404 (552)
.|+||||.+......++..| +|.-|||+.++..|..+..+|++ .+--+||||+|+++|+|+|+++.||+|+ +
T Consensus 331 -~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k-aesgIL~cTDVaARGlD~P~V~~VvQ~~-~ 407 (543)
T KOG0342|consen 331 -YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK-AESGILVCTDVAARGLDIPDVDWVVQYD-P 407 (543)
T ss_pred -ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh-cccceEEecchhhccCCCCCceEEEEeC-C
Confidence 89999999999999888887 46679999999999999999996 6889999999999999999999999999 7
Q ss_pred CCChhhHHHHhhhccccCCC
Q psy11640 405 GGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 405 ~~s~~q~~Qr~GRi~R~~~~ 424 (552)
|.+|.+|+||+||.+|.|..
T Consensus 408 P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 408 PSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred CCCHHHHHHHhccccccCCC
Confidence 99999999999999996553
No 58
>KOG0336|consensus
Probab=99.94 E-value=3.6e-26 Score=226.61 Aligned_cols=291 Identities=17% Similarity=0.249 Sum_probs=197.5
Q ss_pred ccCeecCCCCchhHHHHHHHH------------hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC--
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC------------TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP-- 94 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~------------~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~-- 94 (552)
-+++|+.||+|||+..+.... .....+||+.||++|+.|..-|..++.--....++++.|......
T Consensus 259 DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie 338 (629)
T KOG0336|consen 259 DLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIE 338 (629)
T ss_pred ceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHH
Confidence 478999999999999886432 123469999999999999999999877545567888888775432
Q ss_pred ---CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCC
Q psy11640 95 ---MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 171 (552)
Q Consensus 95 ---~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~ 171 (552)
.+.+|+|+|+..|.... .-..+.-..+.++|+|||.++.- -.|
T Consensus 339 ~lkrgveiiiatPgrlndL~--------~~n~i~l~siTYlVlDEADrMLD-------------MgF------------- 384 (629)
T KOG0336|consen 339 DLKRGVEIIIATPGRLNDLQ--------MDNVINLASITYLVLDEADRMLD-------------MGF------------- 384 (629)
T ss_pred HHhcCceEEeeCCchHhhhh--------hcCeeeeeeeEEEEecchhhhhc-------------ccc-------------
Confidence 56899999999885321 11223336788999998754311 001
Q ss_pred CCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccc-eeeecceeccccc
Q psy11640 172 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHC-KLGLTATLLREDD 250 (552)
Q Consensus 172 ~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~-~lgLTATp~r~d~ 250 (552)
| ...++++-.+.+.+ .+.-|||=. ++
T Consensus 385 ---------------------------------------------E------pqIrkilldiRPDRqtvmTSATWP--~~ 411 (629)
T KOG0336|consen 385 ---------------------------------------------E------PQIRKILLDIRPDRQTVMTSATWP--EG 411 (629)
T ss_pred ---------------------------------------------c------HHHHHHhhhcCCcceeeeecccCc--hH
Confidence 1 22344554444333 344456621 01
Q ss_pred chhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcC
Q psy11640 251 KIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRG 330 (552)
Q Consensus 251 ~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g 330 (552)
. ..|. +.|+..+..+-+- .+. .......++..+......|+..+..+++.+ ...
T Consensus 412 V-----------------rrLa-~sY~Kep~~v~vG-sLd------L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m-s~n 465 (629)
T KOG0336|consen 412 V-----------------RRLA-QSYLKEPMIVYVG-SLD------LVAVKSVKQNIIVTTDSEKLEIVQFFVANM-SSN 465 (629)
T ss_pred H-----------------HHHH-HHhhhCceEEEec-ccc------eeeeeeeeeeEEecccHHHHHHHHHHHHhc-CCC
Confidence 1 1111 1111111111000 000 001111122222334456777778888776 477
Q ss_pred CeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC
Q psy11640 331 DKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG 405 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~ 405 (552)
+|+||||.....++.|...| ....+||.-.+.+|...++.|++ |++++||+|+++++|||+|++.+|++||. |
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrILvaTDlaSRGlDv~DiTHV~NyDF-P 543 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRILVATDLASRGLDVPDITHVYNYDF-P 543 (629)
T ss_pred ceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEEEEEechhhcCCCchhcceeeccCC-C
Confidence 89999999999999998877 34679999999999999999996 99999999999999999999999999995 9
Q ss_pred CChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 406 GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 406 ~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
.|-..|+||+||+||+|+..+ -.++++.+
T Consensus 544 ~nIeeYVHRvGrtGRaGr~G~-------sis~lt~~ 572 (629)
T KOG0336|consen 544 RNIEEYVHRVGRTGRAGRTGT-------SISFLTRN 572 (629)
T ss_pred ccHHHHHHHhcccccCCCCcc-------eEEEEehh
Confidence 999999999999999998543 45555554
No 59
>PRK00254 ski2-like helicase; Provisional
Probab=99.94 E-value=1.7e-25 Score=253.07 Aligned_cols=286 Identities=16% Similarity=0.213 Sum_probs=179.4
Q ss_pred hhccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---CCCCcE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---PMGCGI 99 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~I 99 (552)
.+.-++++|||+|||+++..++. ..+.++|+|+|+++|+.|+.++|..|... ...|..++|+.... ....+|
T Consensus 39 g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~-g~~v~~~~Gd~~~~~~~~~~~~I 117 (720)
T PRK00254 39 GKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKL-GLRVAMTTGDYDSTDEWLGKYDI 117 (720)
T ss_pred CCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhc-CCEEEEEeCCCCCchhhhccCCE
Confidence 34577889999999999966543 24678999999999999999999987543 45788888876432 245799
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|+|++.+.....+. ..++ .+++++|+||+|..... .+
T Consensus 118 iV~Tpe~~~~ll~~~------~~~l--~~l~lvViDE~H~l~~~-------------~r--------------------- 155 (720)
T PRK00254 118 IIATAEKFDSLLRHG------SSWI--KDVKLVVADEIHLIGSY-------------DR--------------------- 155 (720)
T ss_pred EEEcHHHHHHHHhCC------chhh--hcCCEEEEcCcCccCCc-------------cc---------------------
Confidence 999998764321111 1234 57899999998863210 00
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLNFL 258 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~L~~l 258 (552)
...+..++..+ .....++||||+-. ..++..+
T Consensus 156 -------------------------------------------g~~le~il~~l~~~~qiI~lSATl~n----~~~la~w 188 (720)
T PRK00254 156 -------------------------------------------GATLEMILTHMLGRAQILGLSATVGN----AEELAEW 188 (720)
T ss_pred -------------------------------------------hHHHHHHHHhcCcCCcEEEEEccCCC----HHHHHHH
Confidence 01111122222 24578999999843 2344444
Q ss_pred hcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEec
Q psy11640 259 IGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSD 338 (552)
Q Consensus 259 ig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~ 338 (552)
++...+...+... +.. ..+..... .+.......+. .......+.+++ ..+.++||||+
T Consensus 189 l~~~~~~~~~rpv-------~l~-~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~i----~~~~~vLVF~~ 246 (720)
T PRK00254 189 LNAELVVSDWRPV-------KLR-KGVFYQGF-----LFWEDGKIERF-----PNSWESLVYDAV----KKGKGALVFVN 246 (720)
T ss_pred hCCccccCCCCCC-------cce-eeEecCCe-----eeccCcchhcc-----hHHHHHHHHHHH----HhCCCEEEEEc
Confidence 4443322221110 000 00100000 00000000000 000111222222 35789999999
Q ss_pred cHHHHHHHHHHc--------------------------------------CCceEeCCCCHHHHHHHHHhhccCCCeeEE
Q psy11640 339 NVFALKHYAVKM--------------------------------------NKPYIYGPTSQSERIQILQNFKLNPKVNTI 380 (552)
Q Consensus 339 ~~~~~~~l~~~L--------------------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~~vL 380 (552)
++..++.++..| ++.++||++++.+|..+.+.|++ |.++||
T Consensus 247 sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~-G~i~VL 325 (720)
T PRK00254 247 TRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE-GLIKVI 325 (720)
T ss_pred ChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC-CCCeEE
Confidence 987765543221 47789999999999999999995 899999
Q ss_pred EEeCccccccCCCCCCEEEE-------eccCCCChhhHHHHhhhccccCCCC
Q psy11640 381 FVSKVADTSFDLPEANVLIQ-------ISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 381 v~T~v~~~GlDlp~a~~VI~-------~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
|||++++.|+|+|+.++||. +++++-+...|.||+||+||++.+.
T Consensus 326 vaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 326 TATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred EeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 99999999999999988885 2222224568999999999987654
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=1.2e-24 Score=227.38 Aligned_cols=121 Identities=18% Similarity=0.353 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C----CceEeCCCCHHHHHH----HHHhhccCCCeeEEEE
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N----KPYIYGPTSQSERIQ----ILQNFKLNPKVNTIFV 382 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~----~~~i~G~~~~~eR~~----il~~F~~~g~~~vLv~ 382 (552)
.+...+..+++.. ..+.++||||+++..++.++..| + +..+||++++.+|.+ +++.|++ +..++||+
T Consensus 207 ~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~ilva 284 (358)
T TIGR01587 207 GEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFVIVA 284 (358)
T ss_pred cCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeEEEE
Confidence 3455566666543 35789999999999999998888 1 458999999999976 4899996 89999999
Q ss_pred eCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 383 SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 383 T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
|+++++|||+| +++||.+.. ++..|+||+||+||.|... ++..++++|.....+
T Consensus 285 T~~~~~GiDi~-~~~vi~~~~---~~~~~iqr~GR~gR~g~~~-~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 285 TQVIEASLDIS-ADVMITELA---PIDSLIQRLGRLHRYGRKN-GENFEVYIITIAPEG 338 (358)
T ss_pred CcchhceeccC-CCEEEEcCC---CHHHHHHHhccccCCCCCC-CCCCeEEEEeecCCC
Confidence 99999999997 788887653 3778999999999988642 233467777655543
No 61
>KOG0343|consensus
Probab=99.93 E-value=2.2e-25 Score=228.42 Aligned_cols=276 Identities=18% Similarity=0.197 Sum_probs=198.1
Q ss_pred cCeecCCCCchhHHHHHHHHh----c------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc-----CC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT----V------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-----KP 94 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~----~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~-----~~ 94 (552)
-+|.+-||+|||++++.++.. . +--+||+.||++|+.|..+.+.+.........+++.|+..- +.
T Consensus 109 vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi 188 (758)
T KOG0343|consen 109 VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI 188 (758)
T ss_pred cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh
Confidence 356789999999998776542 2 23599999999999999999998776555566666666532 23
Q ss_pred CCCcEEEEcccccccccccchhHHHHHH---HHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQ---WLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 171 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~---~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~ 171 (552)
....|+|||++.|.. +|+ .+...+.-++|+|||.++.. ++
T Consensus 189 ~~mNILVCTPGRLLQ----------Hmde~~~f~t~~lQmLvLDEADR~LD------------------------MG--- 231 (758)
T KOG0343|consen 189 SQMNILVCTPGRLLQ----------HMDENPNFSTSNLQMLVLDEADRMLD------------------------MG--- 231 (758)
T ss_pred hcCCeEEechHHHHH----------HhhhcCCCCCCcceEEEeccHHHHHH------------------------Hh---
Confidence 567899999997742 222 23345678999998744211 00
Q ss_pred CCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceeccccc
Q psy11640 172 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDD 250 (552)
Q Consensus 172 ~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~ 250 (552)
-..+...++..++ ....|++|||+.+.
T Consensus 232 --------------------------------------------------Fk~tL~~Ii~~lP~~RQTLLFSATqt~s-- 259 (758)
T KOG0343|consen 232 --------------------------------------------------FKKTLNAIIENLPKKRQTLLFSATQTKS-- 259 (758)
T ss_pred --------------------------------------------------HHHHHHHHHHhCChhheeeeeecccchh--
Confidence 0122233556665 44578999999753
Q ss_pred chhhhhhhhcccccccCHHHHHHcCCCcceEEEEEE---cCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHh
Q psy11640 251 KIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVW---CPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE 327 (552)
Q Consensus 251 ~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~---~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~ 327 (552)
..+|..+ .+..+.++.+. +.-+|+..++|. ..+.-..|+.+|...|+.|
T Consensus 260 -vkdLaRL-----------------sL~dP~~vsvhe~a~~atP~~L~Q~y---------~~v~l~~Ki~~L~sFI~sh- 311 (758)
T KOG0343|consen 260 -VKDLARL-----------------SLKDPVYVSVHENAVAATPSNLQQSY---------VIVPLEDKIDMLWSFIKSH- 311 (758)
T ss_pred -HHHHHHh-----------------hcCCCcEEEEeccccccChhhhhheE---------EEEehhhHHHHHHHHHHhc-
Confidence 2222221 12223333332 112344333321 2234457899999999988
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc-----C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM-----N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L-----~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
...|+|||..+...+..+.+.| | +..+||.|++..|.++..+|.. ..--|||||+++++|||+|++|.||+
T Consensus 312 -lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~-~~~~vLF~TDv~aRGLDFpaVdwViQ 389 (758)
T KOG0343|consen 312 -LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR-KRAVVLFCTDVAARGLDFPAVDWVIQ 389 (758)
T ss_pred -cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH-hcceEEEeehhhhccCCCcccceEEE
Confidence 6789999999999999988877 3 4568999999999999999986 57789999999999999999999999
Q ss_pred eccCCCChhhHHHHhhhccccCCCC
Q psy11640 401 ISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 401 ~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
+|. |-+..+|+||+||..|.+..+
T Consensus 390 ~DC-Pedv~tYIHRvGRtAR~~~~G 413 (758)
T KOG0343|consen 390 VDC-PEDVDTYIHRVGRTARYKERG 413 (758)
T ss_pred ecC-chhHHHHHHHhhhhhcccCCC
Confidence 995 889999999999999988754
No 62
>PRK01172 ski2-like helicase; Provisional
Probab=99.93 E-value=5e-25 Score=248.06 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=180.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---CCCCcEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---PMGCGILV 101 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~IvI 101 (552)
+-.++++|||+|||+++..++.. .+.++++|+|+++|+.|+.+++.+|... ...+...+|+.... ....+|+|
T Consensus 38 ~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~-g~~v~~~~G~~~~~~~~~~~~dIiv 116 (674)
T PRK01172 38 ENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL-GMRVKISIGDYDDPPDFIKRYDVVI 116 (674)
T ss_pred CcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCCChhhhccCCEEE
Confidence 45788899999999998876643 3678999999999999999999987643 35677777765432 24579999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcccc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVA 181 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~ 181 (552)
+|++.+.....+. ..++ .+++++|+||+|.... ..+|
T Consensus 117 ~Tpek~~~l~~~~------~~~l--~~v~lvViDEaH~l~d-------------~~rg---------------------- 153 (674)
T PRK01172 117 LTSEKADSLIHHD------PYII--NDVGLIVADEIHIIGD-------------EDRG---------------------- 153 (674)
T ss_pred ECHHHHHHHHhCC------hhHH--hhcCEEEEecchhccC-------------CCcc----------------------
Confidence 9998653221111 1223 6789999999886321 0000
Q ss_pred CCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHH---hh-hccceeeecceecccccchhhhhh
Q psy11640 182 PNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLT---IV-QSHCKLGLTATLLREDDKIADLNF 257 (552)
Q Consensus 182 ~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~---~~-~~~~~lgLTATp~r~d~~~~~L~~ 257 (552)
..+..++. .. +....+++|||+.. ..++..
T Consensus 154 ------------------------------------------~~le~ll~~~~~~~~~~riI~lSATl~n----~~~la~ 187 (674)
T PRK01172 154 ------------------------------------------PTLETVLSSARYVNPDARILALSATVSN----ANELAQ 187 (674)
T ss_pred ------------------------------------------HHHHHHHHHHHhcCcCCcEEEEeCccCC----HHHHHH
Confidence 01111111 11 24568999999843 234444
Q ss_pred hhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEe
Q psy11640 258 LIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFS 337 (552)
Q Consensus 258 lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~ 337 (552)
+++...+...+. -.+......... ..+.... ...... +..++......+.++||||
T Consensus 188 wl~~~~~~~~~r-------~vpl~~~i~~~~------~~~~~~~----------~~~~~~-~~~~i~~~~~~~~~vLVF~ 243 (674)
T PRK01172 188 WLNASLIKSNFR-------PVPLKLGILYRK------RLILDGY----------ERSQVD-INSLIKETVNDGGQVLVFV 243 (674)
T ss_pred HhCCCccCCCCC-------CCCeEEEEEecC------eeeeccc----------cccccc-HHHHHHHHHhCCCcEEEEe
Confidence 444333222111 011111000000 0000000 000011 2233333334678999999
Q ss_pred ccHHHHHHHHHHc------------------------------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccc
Q psy11640 338 DNVFALKHYAVKM------------------------------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVAD 387 (552)
Q Consensus 338 ~~~~~~~~l~~~L------------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~ 387 (552)
+++..++.++..| |+.++||++++.+|..+.+.|++ |.++|||+|++++
T Consensus 244 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~-g~i~VLvaT~~la 322 (674)
T PRK01172 244 SSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN-RYIKVIVATPTLA 322 (674)
T ss_pred ccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHc-CCCeEEEecchhh
Confidence 9999888776554 35678999999999999999995 8999999999999
Q ss_pred cccCCCCCCEEEEecc--------CCCChhhHHHHhhhccccCCCC
Q psy11640 388 TSFDLPEANVLIQISS--------HGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 388 ~GlDlp~a~~VI~~~~--------~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
+|+|+|+. .||+.+. .+.+..++.||+||+||.+.+.
T Consensus 323 ~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 367 (674)
T PRK01172 323 AGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQ 367 (674)
T ss_pred ccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 99999975 5555331 1347789999999999998654
No 63
>KOG0339|consensus
Probab=99.92 E-value=1.4e-24 Score=220.49 Aligned_cols=292 Identities=17% Similarity=0.197 Sum_probs=200.6
Q ss_pred ccCeecCCCCchhHHHHHHHH-h------c---CCc-EEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccCC--
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC-T------V---RKR-ALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDKP-- 94 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~-~------~---~~~-~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~~-- 94 (552)
-.++++-||+|||.+.+-.+. + + .+| .||||||++|+.|...|.++|... ....|+++.|..++..
T Consensus 262 dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k 341 (731)
T KOG0339|consen 262 DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK 341 (731)
T ss_pred cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH
Confidence 357889999999988775443 1 1 234 689999999999999999999643 3356777777775432
Q ss_pred ---CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCC
Q psy11640 95 ---MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKP 171 (552)
Q Consensus 95 ---~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~ 171 (552)
.++.|||+|++.|... .-|......+..++|+||+.++.
T Consensus 342 ~Lk~g~EivVaTPgRlid~--------VkmKatn~~rvS~LV~DEadrmf------------------------------ 383 (731)
T KOG0339|consen 342 ELKEGAEIVVATPGRLIDM--------VKMKATNLSRVSYLVLDEADRMF------------------------------ 383 (731)
T ss_pred hhhcCCeEEEechHHHHHH--------HHhhcccceeeeEEEEechhhhh------------------------------
Confidence 6789999999966421 11223333678899999874421
Q ss_pred CCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceeccccc
Q psy11640 172 DHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDD 250 (552)
Q Consensus 172 ~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~ 250 (552)
+.--..+.+.+...+. .+..|.+|||...
T Consensus 384 -----------------------------------------------dmGfe~qVrSI~~hirpdrQtllFsaTf~~--- 413 (731)
T KOG0339|consen 384 -----------------------------------------------DMGFEPQVRSIKQHIRPDRQTLLFSATFKK--- 413 (731)
T ss_pred -----------------------------------------------ccccHHHHHHHHhhcCCcceEEEeeccchH---
Confidence 1111122333444443 5667889999632
Q ss_pred chhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHh-cCchhHHHH-HHHHHHHhh
Q psy11640 251 KIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYV-MNPNKYRAT-QYLIAYHER 328 (552)
Q Consensus 251 ~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~-~~~~K~~~l-~~Ll~~~~~ 328 (552)
. ...|.+.-..-|+.++...+....+... +.+..+ ..+.|+..| ..|....
T Consensus 414 k----------------Ie~lard~L~dpVrvVqg~vgean~dIT---------Q~V~V~~s~~~Kl~wl~~~L~~f~-- 466 (731)
T KOG0339|consen 414 K----------------IEKLARDILSDPVRVVQGEVGEANEDIT---------QTVSVCPSEEKKLNWLLRHLVEFS-- 466 (731)
T ss_pred H----------------HHHHHHHHhcCCeeEEEeehhccccchh---------heeeeccCcHHHHHHHHHHhhhhc--
Confidence 1 1222222223344443333222211111 111112 223566654 3333333
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEecc
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISS 403 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~ 403 (552)
...++|||+.-...++.++..| ++..+||++.+.+|.++|..|+. ..+.||++|+++.+|+|||++.+||++|
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~VlvatDvaargldI~~ikTVvnyD- 544 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPVLVATDVAARGLDIPSIKTVVNYD- 544 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCceEEEeeHhhcCCCccccceeeccc-
Confidence 4569999999999999999988 57889999999999999999996 7899999999999999999999999999
Q ss_pred CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchh
Q psy11640 404 HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444 (552)
Q Consensus 404 ~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e 444 (552)
...+...+.||+||.||++.. ...|+||++...+
T Consensus 545 ~ardIdththrigrtgRag~k-------GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 545 FARDIDTHTHRIGRTGRAGEK-------GVAYTLVTEKDAE 578 (731)
T ss_pred ccchhHHHHHHhhhccccccc-------ceeeEEechhhHH
Confidence 488899999999999999873 5689999985444
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=1.5e-24 Score=253.05 Aligned_cols=296 Identities=16% Similarity=0.135 Sum_probs=179.1
Q ss_pred eecCCCCchhHHHHHHH-Hhc---------------CCcEEEEecCchhHHHHHHHHHhhh----------C--CCCCcE
Q psy11640 32 KKKRPSAGKSLVGVTAC-CTV---------------RKRALVLCNSGVSVEQWKHQFKLWS----------T--ADDSMI 83 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i-~~~---------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~----------~--~~~~~I 83 (552)
+++|||+|||+++...+ ... +.++|+|+|+++|+.|..+.++..+ + .....|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999987743 211 2469999999999999998886411 1 124578
Q ss_pred EEEecCcccC------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCccc
Q psy11640 84 CRFTSEAKDK------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDE 157 (552)
Q Consensus 84 ~~~~g~~~~~------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~ 157 (552)
.+++|+.... ...++|+|||+++|...... +....| .+.++||+||+|......
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-----k~r~~L--~~Vr~VIVDE~H~L~g~k------------- 140 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-----RARETL--RGVETVIIDEVHAVAGSK------------- 140 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-----hhhhhh--ccCCEEEEecHHHhcccc-------------
Confidence 8899986431 13579999999988532110 111234 679999999987632100
Q ss_pred ccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hcc
Q psy11640 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSH 236 (552)
Q Consensus 158 f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~ 236 (552)
+ ..|. .....++...+ ...
T Consensus 141 R----------------------------------------------------------G~~L--el~LeRL~~l~~~~~ 160 (1490)
T PRK09751 141 R----------------------------------------------------------GAHL--ALSLERLDALLHTSA 160 (1490)
T ss_pred c----------------------------------------------------------ccHH--HHHHHHHHHhCCCCC
Confidence 0 0000 01112222222 245
Q ss_pred ceeeecceecccccchhhhhhhhccc-ccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhh--hhhhhHHhcCc
Q psy11640 237 CKLGLTATLLREDDKIADLNFLIGPK-LYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKT--SKRLLLYVMNP 313 (552)
Q Consensus 237 ~~lgLTATp~r~d~~~~~L~~lig~~-~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~--~~~~~~~~~~~ 313 (552)
.+||||||.-.. .++..+++.. ... ++......+... .+.++.... ..+..... .........+.
T Consensus 161 QrIgLSATI~n~----eevA~~L~g~~pv~-----Iv~~~~~r~~~l-~v~vp~~d~--~~~~~~~~~~~~~~~~~r~~~ 228 (1490)
T PRK09751 161 QRIGLSATVRSA----SDVAAFLGGDRPVT-----VVNPPAMRHPQI-RIVVPVANM--DDVSSVASGTGEDSHAGREGS 228 (1490)
T ss_pred eEEEEEeeCCCH----HHHHHHhcCCCCEE-----EECCCCCcccce-EEEEecCch--hhccccccccccccchhhhhh
Confidence 789999997432 2333333211 000 000011111111 122221110 00000000 00000000000
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHcC--------------------------------------CceE
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMN--------------------------------------KPYI 355 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~--------------------------------------~~~i 355 (552)
-.-.+...++... ..+.++||||+++..++.++..|+ +..+
T Consensus 229 i~~~v~~~il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 229 IWPYIETGILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred hhHHHHHHHHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeec
Confidence 0001112333332 256799999999999998887662 2357
Q ss_pred eCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccC
Q psy11640 356 YGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422 (552)
Q Consensus 356 ~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~ 422 (552)
||++++++|..+.+.|++ |++++||+|+.++.|||++++++||++++ |.+...|+||+||+||..
T Consensus 308 HGsLSkeeR~~IE~~fK~-G~LrvLVATssLELGIDIg~VDlVIq~gs-P~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKS-GELRCVVATSSLELGIDMGAVDLVIQVAT-PLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred cccCCHHHHHHHHHHHHh-CCceEEEeCcHHHccCCcccCCEEEEeCC-CCCHHHHHHHhCCCCCCC
Confidence 899999999999999995 89999999999999999999999999995 899999999999999973
No 65
>KOG0335|consensus
Probab=99.92 E-value=4e-24 Score=220.65 Aligned_cols=281 Identities=21% Similarity=0.264 Sum_probs=185.0
Q ss_pred CeecCCCCchhHHHHHHHHh----c------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc--
Q psy11640 31 KKKKRPSAGKSLVGVTACCT----V------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-- 92 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~----~------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~-- 92 (552)
.+++|||+|||...+..+.. . ...+|||+||++|+.|.++|.++|.......+++..|+...
T Consensus 115 ~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~ 194 (482)
T KOG0335|consen 115 MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA 194 (482)
T ss_pred EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh
Confidence 46799999999998876531 0 24699999999999999999999997766666666665322
Q ss_pred --C--CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 93 --K--PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 93 --~--~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
+ ..+++|+|+|+.-|.....+. .+...+..++|+|||.++. +.++
T Consensus 195 q~~~~~~gcdIlvaTpGrL~d~~e~g--------~i~l~~~k~~vLDEADrMl--------------D~mg--------- 243 (482)
T KOG0335|consen 195 QLRFIKRGCDILVATPGRLKDLIERG--------KISLDNCKFLVLDEADRML--------------DEMG--------- 243 (482)
T ss_pred hhhhhccCccEEEecCchhhhhhhcc--------eeehhhCcEEEecchHHhh--------------hhcc---------
Confidence 1 267999999999875432211 1223567799999875432 1111
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHh-----hhccceeeecc
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTI-----VQSHCKLGLTA 243 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~-----~~~~~~lgLTA 243 (552)
|-|- .++++.. ......+.+||
T Consensus 244 ----------------------F~p~-------------------------------Ir~iv~~~~~~~~~~~qt~mFSA 270 (482)
T KOG0335|consen 244 ----------------------FEPQ-------------------------------IRKIVEQLGMPPKNNRQTLLFSA 270 (482)
T ss_pred ----------------------cccc-------------------------------HHHHhcccCCCCccceeEEEEec
Confidence 0000 1112111 12455677888
Q ss_pred eecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEE-EcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHH
Q psy11640 244 TLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEV-WCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYL 322 (552)
Q Consensus 244 Tp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v-~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~L 322 (552)
|-.++ ++.+-. ..+. +. +....| .+.-+ .....+....+....|...|.++
T Consensus 271 tfp~~---iq~l~~---~fl~---------~~----yi~laV~rvg~~---------~~ni~q~i~~V~~~~kr~~Lldl 322 (482)
T KOG0335|consen 271 TFPKE---IQRLAA---DFLK---------DN----YIFLAVGRVGST---------SENITQKILFVNEMEKRSKLLDL 322 (482)
T ss_pred cCChh---hhhhHH---HHhh---------cc----ceEEEEeeeccc---------cccceeEeeeecchhhHHHHHHH
Confidence 85332 111111 1110 11 000000 00000 00011112223334455555555
Q ss_pred HHHHhh---c----CCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcccccc
Q psy11640 323 IAYHER---R----GDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSF 390 (552)
Q Consensus 323 l~~~~~---~----g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~Gl 390 (552)
+..... . .++++||++++..++.++..| .+..|||.-++.+|.+.|+.|+. |++.+||+|.++++||
T Consensus 323 l~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pvlVaT~VaaRGl 401 (482)
T KOG0335|consen 323 LNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPVLVATNVAARGL 401 (482)
T ss_pred hhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcceEEEehhhhcCC
Confidence 543321 1 138999999999999999999 34569999999999999999995 9999999999999999
Q ss_pred CCCCCCEEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 391 DLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 391 Dlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
|+|.+.+||+|| .|.+-..|+||+||+||.|.+.
T Consensus 402 Di~~V~hVInyD-mP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 402 DIPNVKHVINYD-MPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred CCCCCceeEEee-cCcchhhHHHhccccccCCCCc
Confidence 999999999999 6888999999999999999854
No 66
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.7e-23 Score=234.02 Aligned_cols=297 Identities=18% Similarity=0.198 Sum_probs=207.9
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHH-hhhCCCCCcEEEEecCccc----------CCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFK-LWSTADDSMICRFTSEAKD----------KPM 95 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~-~~~~~~~~~I~~~~g~~~~----------~~~ 95 (552)
.++|+-.|.|||-||+-++. ..+++|.|||||..|++|+.+.|+ +|.++| ..|.+++.-... ...
T Consensus 618 RLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G 696 (1139)
T COG1197 618 RLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEG 696 (1139)
T ss_pred heeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcC
Confidence 58999999999999998765 457899999999999999999998 566654 566655443211 125
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|...|... +.-.+.||+|+||=| .||.
T Consensus 697 ~vDIvIGTHrLL~kd-------------v~FkdLGLlIIDEEq------------------RFGV--------------- 730 (1139)
T COG1197 697 KVDIVIGTHRLLSKD-------------VKFKDLGLLIIDEEQ------------------RFGV--------------- 730 (1139)
T ss_pred CccEEEechHhhCCC-------------cEEecCCeEEEechh------------------hcCc---------------
Confidence 689999999988653 222789999999632 3432
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L 255 (552)
..-.++-+.-..-.+|-|||||+...-.
T Consensus 731 ------------------------------------------------k~KEkLK~Lr~~VDvLTLSATPIPRTL~---- 758 (1139)
T COG1197 731 ------------------------------------------------KHKEKLKELRANVDVLTLSATPIPRTLN---- 758 (1139)
T ss_pred ------------------------------------------------cHHHHHHHHhccCcEEEeeCCCCcchHH----
Confidence 1112122222345689999999854211
Q ss_pred hhhhcccccccCHHHHHHcCCCcce----EEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCC
Q psy11640 256 NFLIGPKLYEANWLELQKRGFIARV----QCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD 331 (552)
Q Consensus 256 ~~lig~~~~~~~~~el~~~g~l~~~----~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~ 331 (552)
.++.| ..+|. -+..|+ .+.....+.++ .++.+.|.....+|+
T Consensus 759 Msm~G-------iRdlS--vI~TPP~~R~pV~T~V~~~d~-------------------------~~ireAI~REl~RgG 804 (1139)
T COG1197 759 MSLSG-------IRDLS--VIATPPEDRLPVKTFVSEYDD-------------------------LLIREAILRELLRGG 804 (1139)
T ss_pred HHHhc-------chhhh--hccCCCCCCcceEEEEecCCh-------------------------HHHHHHHHHHHhcCC
Confidence 11221 11221 011111 11111111111 223233322335899
Q ss_pred eEEEEeccHHHHHHHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccC
Q psy11640 332 KTIVFSDNVFALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH 404 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~ 404 (552)
++....+.++.++.++..| .+.+.||.|+..+-.+++..|-+ |+++|||||.+.+.|||||+||++|+-+..
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~-g~~dVLv~TTIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN-GEYDVLVCTTIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc-CCCCEEEEeeeeecCcCCCCCceEEEeccc
Confidence 9999999999999988887 57889999999999999999995 899999999999999999999999996533
Q ss_pred CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHH---HcCCCeeEeec
Q psy11640 405 GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI---NQGYSYKVITK 467 (552)
Q Consensus 405 ~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~---~~g~~~~v~~~ 467 (552)
---..|..|-.||+||.+. .+|.|-++-.+..--..+.+|.+.+. +.|-.|++..+
T Consensus 884 ~fGLsQLyQLRGRVGRS~~-------~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~ 942 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNK-------QAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMH 942 (1139)
T ss_pred cccHHHHHHhccccCCccc-------eEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhc
Confidence 3348899999999999766 58899888876666667888877664 46777776643
No 67
>KOG0348|consensus
Probab=99.92 E-value=1.8e-24 Score=221.03 Aligned_cols=317 Identities=18% Similarity=0.186 Sum_probs=180.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------------CCcEEEEecCchhHHHHHHHHHhhhCCCC-CcEEEEecCcccCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------------RKRALVLCNSGVSVEQWKHQFKLWSTADD-SMICRFTSEAKDKP 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~-~~I~~~~g~~~~~~ 94 (552)
+-.++-++||+|||+..++.+... +.-+||||||++|+.|.++.+++....-. ..-+++.|+.+.+.
T Consensus 175 rD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKS 254 (708)
T KOG0348|consen 175 RDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKS 254 (708)
T ss_pred cceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccccccc
Confidence 345667999999999998876521 22489999999999999999998775211 12234555543321
Q ss_pred ------CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 95 ------MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 95 ------~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
.+..|+|+|++.|....+. -..|.-.....+|+|||.+... -+|.
T Consensus 255 EKARLRKGiNILIgTPGRLvDHLkn-------T~~i~~s~LRwlVlDEaDrlle-------------LGfe--------- 305 (708)
T KOG0348|consen 255 EKARLRKGINILIGTPGRLVDHLKN-------TKSIKFSRLRWLVLDEADRLLE-------------LGFE--------- 305 (708)
T ss_pred HHHHHhcCceEEEcCchHHHHHHhc-------cchheeeeeeEEEecchhHHHh-------------ccch---------
Confidence 5689999999977532111 1122235577899999755211 0111
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCC-CccccceeecchhHHHHHHHhhhccceeeecceecc
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCR-PEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLR 247 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r-~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r 247 (552)
...++...++..+.+..|. +.++| ....+.||||..-
T Consensus 306 ------------------------kdit~Il~~v~~~~~~e~~~~~lp~------------------q~q~mLlSATLtd 343 (708)
T KOG0348|consen 306 ------------------------KDITQILKAVHSIQNAECKDPKLPH------------------QLQNMLLSATLTD 343 (708)
T ss_pred ------------------------hhHHHHHHHHhhccchhcccccccH------------------HHHhHhhhhhhHH
Confidence 0011111111111111111 11111 1234678888742
Q ss_pred cccchhhhhh--hhcccccccCHHHHHHcCCCcceEEEEEEcCCC-HHHHHHHHhhhhhhhhhHHhcCchhHH--HHHHH
Q psy11640 248 EDDKIADLNF--LIGPKLYEANWLELQKRGFIARVQCAEVWCPMS-PEFYREYLVCKTSKRLLLYVMNPNKYR--ATQYL 322 (552)
Q Consensus 248 ~d~~~~~L~~--lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~-~~~~~~y~~~~~~~~~~~~~~~~~K~~--~l~~L 322 (552)
....|.. +-.|.....+ -...+..+....+...++.. .+.+..| ... ..-.+.+..-|.|++ +|..+
T Consensus 344 ---~V~rLa~~sLkDpv~I~ld---~s~~~~~p~~~a~~ev~~~~~~~~l~~~-~iP-eqL~qry~vVPpKLRLV~Laa~ 415 (708)
T KOG0348|consen 344 ---GVNRLADLSLKDPVYISLD---KSHSQLNPKDKAVQEVDDGPAGDKLDSF-AIP-EQLLQRYTVVPPKLRLVALAAL 415 (708)
T ss_pred ---HHHHHhhccccCceeeecc---chhhhcCcchhhhhhcCCcccccccccc-cCc-HHhhhceEecCCchhHHHHHHH
Confidence 2222221 1122222200 00011110000000001100 0000000 000 000111223355554 44445
Q ss_pred HHHHh--hcCCeEEEEeccHHHHHHHHHHc---------------------------CCceEeCCCCHHHHHHHHHhhcc
Q psy11640 323 IAYHE--RRGDKTIVFSDNVFALKHYAVKM---------------------------NKPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 323 l~~~~--~~g~kvIVF~~~~~~~~~l~~~L---------------------------~~~~i~G~~~~~eR~~il~~F~~ 373 (552)
|..+. ....|+|||....+.++.=...| .+..+||+|++++|..+++.|.+
T Consensus 416 L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~ 495 (708)
T KOG0348|consen 416 LLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH 495 (708)
T ss_pred HHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc
Confidence 53321 24459999999888877644443 13468999999999999999997
Q ss_pred CCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 374 NPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 374 ~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
..--||+||+|+++|||+|.+.+||+|+ +|.++..|+||+||..|+|..+
T Consensus 496 -~~~~VLLcTDVAaRGLDlP~V~~vVQYd-~P~s~adylHRvGRTARaG~kG 545 (708)
T KOG0348|consen 496 -SRRAVLLCTDVAARGLDLPHVGLVVQYD-PPFSTADYLHRVGRTARAGEKG 545 (708)
T ss_pred -ccceEEEehhhhhccCCCCCcCeEEEeC-CCCCHHHHHHHhhhhhhccCCC
Confidence 4555999999999999999999999999 6999999999999999999854
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=8e-24 Score=236.20 Aligned_cols=291 Identities=16% Similarity=0.180 Sum_probs=187.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---CCCCcE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---PMGCGI 99 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~I 99 (552)
.+-.++++|||+|||++|..++.. .+.+++.|||+++|+++-.++|++|..+ ..+|...+|+.... ...++|
T Consensus 47 ~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~-GirV~~~TgD~~~~~~~l~~~~V 125 (766)
T COG1204 47 DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEEL-GIRVGISTGDYDLDDERLARYDV 125 (766)
T ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhc-CCEEEEecCCcccchhhhccCCE
Confidence 567899999999999999988763 3579999999999999999999955443 36899999998643 367999
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|+||+.+-....+.. .++ .+++++|+||.|-.....
T Consensus 126 iVtT~EK~Dsl~R~~~------~~~--~~V~lvViDEiH~l~d~~----------------------------------- 162 (766)
T COG1204 126 IVTTPEKLDSLTRKRP------SWI--EEVDLVVIDEIHLLGDRT----------------------------------- 162 (766)
T ss_pred EEEchHHhhHhhhcCc------chh--hcccEEEEeeeeecCCcc-----------------------------------
Confidence 9999998754322221 133 689999999887532100
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLI 259 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~li 259 (552)
.|. +. | ....+..........+|||||.-. ..++-.++
T Consensus 163 ---RG~--------~l---------------------E------~iv~r~~~~~~~~rivgLSATlpN----~~evA~wL 200 (766)
T COG1204 163 ---RGP--------VL---------------------E------SIVARMRRLNELIRIVGLSATLPN----AEEVADWL 200 (766)
T ss_pred ---cCc--------ee---------------------h------hHHHHHHhhCcceEEEEEeeecCC----HHHHHHHh
Confidence 000 00 1 111112222223478999999853 34444444
Q ss_pred cccccccCHH--HHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEe
Q psy11640 260 GPKLYEANWL--ELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFS 337 (552)
Q Consensus 260 g~~~~~~~~~--el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~ 337 (552)
+...+...|. .+. .+....... +... ...+ .....+...+..++....+.++.+||||
T Consensus 201 ~a~~~~~~~rp~~l~-~~v~~~~~~----~~~~-----------~~~k----~~~~~~~~~~~~~v~~~~~~~~qvLvFv 260 (766)
T COG1204 201 NAKLVESDWRPVPLR-RGVPYVGAF----LGAD-----------GKKK----TWPLLIDNLALELVLESLAEGGQVLVFV 260 (766)
T ss_pred CCcccccCCCCcccc-cCCccceEE----EEec-----------Cccc----cccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 4443322221 111 110000000 0000 0000 0011223344444444556899999999
Q ss_pred ccHHHHHHHHHHc------------------------------------------CCceEeCCCCHHHHHHHHHhhccCC
Q psy11640 338 DNVFALKHYAVKM------------------------------------------NKPYIYGPTSQSERIQILQNFKLNP 375 (552)
Q Consensus 338 ~~~~~~~~l~~~L------------------------------------------~~~~i~G~~~~~eR~~il~~F~~~g 375 (552)
+++..+...++.+ |+++.|.+++..+|+-+-+.|+. |
T Consensus 261 ~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~-g 339 (766)
T COG1204 261 HSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK-G 339 (766)
T ss_pred ecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc-C
Confidence 9876554443333 45678999999999999999996 9
Q ss_pred CeeEEEEeCccccccCCCCCCEEEE-----ec----cCCCChhhHHHHhhhccccCCCC
Q psy11640 376 KVNTIFVSKVADTSFDLPEANVLIQ-----IS----SHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 376 ~~~vLv~T~v~~~GlDlp~a~~VI~-----~~----~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
.++||++|+.+..|+|+| |.+||+ ++ +..-+...+.|+.||+||++-+.
T Consensus 340 ~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 340 KIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred CceEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCC
Confidence 999999999999999999 666666 33 11235667899999999998754
No 69
>KOG0341|consensus
Probab=99.91 E-value=2e-24 Score=212.89 Aligned_cols=291 Identities=18% Similarity=0.218 Sum_probs=190.6
Q ss_pred hccCeecCCCCchhHHHHHHHH-------------hcCCc-EEEEecCchhHHHHHHHHHhhhC------CCCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC-------------TVRKR-ALVLCNSGVSVEQWKHQFKLWST------ADDSMICRFT 87 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~-------------~~~~~-~LIl~Pt~~Lv~Qw~~e~~~~~~------~~~~~I~~~~ 87 (552)
+-++|++-||+|||++++..+- +..+| .||+||+++|+.|..+-+..|.. .|..+-+...
T Consensus 208 RDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~Lci 287 (610)
T KOG0341|consen 208 RDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCI 287 (610)
T ss_pred CceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhh
Confidence 4578899999999998765431 11233 79999999999999998887763 2434444444
Q ss_pred cCccc------CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccch
Q psy11640 88 SEAKD------KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAK 161 (552)
Q Consensus 88 g~~~~------~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~ 161 (552)
|+..- -..+.+|+|+|++.|.... ..+.+. -.-..++.+|||.|... -.|
T Consensus 288 GG~~v~eql~~v~~GvHivVATPGRL~DmL-----~KK~~s---Ld~CRyL~lDEADRmiD-------------mGF--- 343 (610)
T KOG0341|consen 288 GGVPVREQLDVVRRGVHIVVATPGRLMDML-----AKKIMS---LDACRYLTLDEADRMID-------------MGF--- 343 (610)
T ss_pred cCccHHHHHHHHhcCeeEEEcCcchHHHHH-----HHhhcc---HHHHHHhhhhhHHHHhh-------------ccc---
Confidence 44321 1256899999999663210 001111 13456788898644210 000
Q ss_pred hhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceee
Q psy11640 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLG 240 (552)
Q Consensus 162 d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lg 240 (552)
| .-.+.+...+. ....|.
T Consensus 344 -------------------------------------------------------E------ddir~iF~~FK~QRQTLL 362 (610)
T KOG0341|consen 344 -------------------------------------------------------E------DDIRTIFSFFKGQRQTLL 362 (610)
T ss_pred -------------------------------------------------------h------hhHHHHHHHHhhhhheee
Confidence 0 11122444444 345688
Q ss_pred ecceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEE---cCCCHHHHHHHHhhhhhhhhhHHhcCchhHH
Q psy11640 241 LTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVW---CPMSPEFYREYLVCKTSKRLLLYVMNPNKYR 317 (552)
Q Consensus 241 LTATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~---~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~ 317 (552)
+|||..+ +++.. .+...+.|+.+..=. ..+.--+.-+|... .+|+
T Consensus 363 FSATMP~---KIQ~F----------------AkSALVKPvtvNVGRAGAAsldViQevEyVkq------------EaKi- 410 (610)
T KOG0341|consen 363 FSATMPK---KIQNF----------------AKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ------------EAKI- 410 (610)
T ss_pred eeccccH---HHHHH----------------HHhhcccceEEecccccccchhHHHHHHHHHh------------hhhh-
Confidence 9999743 22221 111122222211100 01111122233332 3343
Q ss_pred HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCC
Q psy11640 318 ATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDL 392 (552)
Q Consensus 318 ~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDl 392 (552)
.+||+.++...-++||||.....++.+.++| | +..|||+-.+++|...++.|+. |+-.|||+|++++.|+|+
T Consensus 411 --VylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~-gkKDVLVATDVASKGLDF 487 (610)
T KOG0341|consen 411 --VYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA-GKKDVLVATDVASKGLDF 487 (610)
T ss_pred --hhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc-CCCceEEEecchhccCCC
Confidence 4577777778889999999999999999887 4 4679999999999999999996 899999999999999999
Q ss_pred CCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhH
Q psy11640 393 PEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446 (552)
Q Consensus 393 p~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~ 446 (552)
|++.+||+|| .|..-..|++|+||.||.|.. ...-+|+.+.+.+..
T Consensus 488 p~iqHVINyD-MP~eIENYVHRIGRTGRsg~~-------GiATTfINK~~~esv 533 (610)
T KOG0341|consen 488 PDIQHVINYD-MPEEIENYVHRIGRTGRSGKT-------GIATTFINKNQEESV 533 (610)
T ss_pred ccchhhccCC-ChHHHHHHHHHhcccCCCCCc-------ceeeeeecccchHHH
Confidence 9999999999 698899999999999998874 345667777654433
No 70
>KOG0326|consensus
Probab=99.91 E-value=3.8e-24 Score=206.48 Aligned_cols=285 Identities=14% Similarity=0.165 Sum_probs=195.3
Q ss_pred ecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc--C----CCCCcEE
Q psy11640 33 KKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--K----PMGCGIL 100 (552)
Q Consensus 33 vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~--~----~~~~~Iv 100 (552)
-+-.|+|||-..+..+... .-.++|+||+++|+-|..+.++.....-...+.+-+|+..- . ....+++
T Consensus 128 RaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~ 207 (459)
T KOG0326|consen 128 RAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLV 207 (459)
T ss_pred hccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEE
Confidence 3668999998876655432 23699999999999988777776664434566666776532 1 1557899
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
|+|++.+....++. ...+ .+..++|+|||.....
T Consensus 208 vgTPGRIlDL~~Kg------Va~l--s~c~~lV~DEADKlLs-------------------------------------- 241 (459)
T KOG0326|consen 208 VGTPGRILDLAKKG------VADL--SDCVILVMDEADKLLS-------------------------------------- 241 (459)
T ss_pred EcCChhHHHHHhcc------cccc--hhceEEEechhhhhhc--------------------------------------
Confidence 99999765432211 1122 5678999998632110
Q ss_pred cCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhhh
Q psy11640 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLI 259 (552)
Q Consensus 181 ~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~li 259 (552)
. ++. ....+++..++ .+..+..|||-.-
T Consensus 242 ------------------~-----------------~F~----~~~e~li~~lP~~rQillySATFP~------------ 270 (459)
T KOG0326|consen 242 ------------------V-----------------DFQ----PIVEKLISFLPKERQILLYSATFPL------------ 270 (459)
T ss_pred ------------------h-----------------hhh----hHHHHHHHhCCccceeeEEecccch------------
Confidence 0 111 12233555555 4556777998421
Q ss_pred cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEecc
Q psy11640 260 GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDN 339 (552)
Q Consensus 260 g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~ 339 (552)
...... ..++..+.+...--+++.....+|. .++....|..+|..|.... .-.+.||||++
T Consensus 271 -------tVk~Fm-~~~l~kPy~INLM~eLtl~GvtQyY---------afV~e~qKvhCLntLfskL--qINQsIIFCNS 331 (459)
T KOG0326|consen 271 -------TVKGFM-DRHLKKPYEINLMEELTLKGVTQYY---------AFVEERQKVHCLNTLFSKL--QINQSIIFCNS 331 (459)
T ss_pred -------hHHHHH-HHhccCcceeehhhhhhhcchhhhe---------eeechhhhhhhHHHHHHHh--cccceEEEecc
Confidence 111121 1222222222211122222222222 2344567888888888877 56789999999
Q ss_pred HHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHH
Q psy11640 340 VFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQR 414 (552)
Q Consensus 340 ~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr 414 (552)
+..++.|+..+ | +.++|..|-++.|.+++.+|++ |.|+.||+|+.+.+|||+|++|+||++|. |.++..|.+|
T Consensus 332 ~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crnLVctDL~TRGIDiqavNvVINFDf-pk~aEtYLHR 409 (459)
T KOG0326|consen 332 TNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRNLVCTDLFTRGIDIQAVNVVINFDF-PKNAETYLHR 409 (459)
T ss_pred chHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccceeeehhhhhcccccceeeEEEecCC-CCCHHHHHHH
Confidence 99999999876 4 5689999999999999999995 99999999999999999999999999995 9999999999
Q ss_pred hhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 415 LGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 415 ~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
+||.||-|. .....+||+-+.
T Consensus 410 IGRsGRFGh-------lGlAInLityed 430 (459)
T KOG0326|consen 410 IGRSGRFGH-------LGLAINLITYED 430 (459)
T ss_pred ccCCccCCC-------cceEEEEEehhh
Confidence 999999886 356788887643
No 71
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.91 E-value=7.1e-23 Score=225.75 Aligned_cols=291 Identities=18% Similarity=0.163 Sum_probs=177.4
Q ss_pred hhhccCeecCCCCchhHHH-------------HHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCC---CCCcEE
Q psy11640 26 KKKKKKKKKRPSAGKSLVG-------------VTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTA---DDSMIC 84 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~a-------------i~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~---~~~~I~ 84 (552)
+.+--+++++||+|||.+. +..+.. ...+++|++|+++|+.|...++.+..+. ....|.
T Consensus 178 ~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~ 257 (675)
T PHA02653 178 SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPIS 257 (675)
T ss_pred hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEE
Confidence 3455677899999999872 111111 1358999999999999999999875543 334566
Q ss_pred EEecCcccC-----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCccccc
Q psy11640 85 RFTSEAKDK-----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFG 159 (552)
Q Consensus 85 ~~~g~~~~~-----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~ 159 (552)
+..|+..+. ....+|+|+|..... ..+ ..+++||+||+|......
T Consensus 258 v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l-------------~~L--~~v~~VVIDEaHEr~~~~--------------- 307 (675)
T PHA02653 258 LKYGSIPDELINTNPKPYGLVFSTHKLTL-------------NKL--FDYGTVIIDEVHEHDQIG--------------- 307 (675)
T ss_pred EEECCcchHHhhcccCCCCEEEEeCcccc-------------ccc--ccCCEEEccccccCccch---------------
Confidence 666655321 234689999865321 113 679999999998732100
Q ss_pred chhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-h-ccc
Q psy11640 160 AKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-Q-SHC 237 (552)
Q Consensus 160 ~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~-~~~ 237 (552)
|++. .++... . .+.
T Consensus 308 ----------------------------------------DllL------------------------~llk~~~~~~rq 323 (675)
T PHA02653 308 ----------------------------------------DIII------------------------AVARKHIDKIRS 323 (675)
T ss_pred ----------------------------------------hHHH------------------------HHHHHhhhhcCE
Confidence 0000 011111 1 135
Q ss_pred eeeecceecccccchhhhhhhhc-ccccccCHHHHHHcCC-CcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchh
Q psy11640 238 KLGLTATLLREDDKIADLNFLIG-PKLYEANWLELQKRGF-IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNK 315 (552)
Q Consensus 238 ~lgLTATp~r~d~~~~~L~~lig-~~~~~~~~~el~~~g~-l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K 315 (552)
.+.+|||+... ...+..+++ |..... .|. ..+++..-+.....+.....|.. ..+
T Consensus 324 ~ILmSATl~~d---v~~l~~~~~~p~~I~I-------~grt~~pV~~~yi~~~~~~~~~~~y~~-------------~~k 380 (675)
T PHA02653 324 LFLMTATLEDD---RDRIKEFFPNPAFVHI-------PGGTLFPISEVYVKNKYNPKNKRAYIE-------------EEK 380 (675)
T ss_pred EEEEccCCcHh---HHHHHHHhcCCcEEEe-------CCCcCCCeEEEEeecCcccccchhhhH-------------HHH
Confidence 79999998421 222333333 222221 121 12322211111111111111211 112
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHcC-------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcccc
Q psy11640 316 YRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMN-------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADT 388 (552)
Q Consensus 316 ~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~ 388 (552)
..++..+.......+..+|||++++..++.+++.|. +..+||++++. ++.+++|..+|+.+|||+|+++++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 223333332222245689999999999999888772 45689999974 577788732489999999999999
Q ss_pred ccCCCCCCEEEEec---cC--------CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCch
Q psy11640 389 SFDLPEANVLIQIS---SH--------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443 (552)
Q Consensus 389 GlDlp~a~~VI~~~---~~--------~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~ 443 (552)
|||+|++++||.++ .+ +-|..++.||.||+||..+| ..|+|.+.+..
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G--------~c~rLyt~~~~ 516 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPG--------TYVYFYDLDLL 516 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCC--------eEEEEECHHHh
Confidence 99999999999875 11 12778999999999999654 36778877654
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=2.5e-23 Score=228.62 Aligned_cols=369 Identities=13% Similarity=0.099 Sum_probs=198.2
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecC-cc-cC-------CCCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSE-AK-DK-------PMGC 97 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~-~~-~~-------~~~~ 97 (552)
.++.|+||+|||++++.++. ..+..++||+|+..|+.||.+.+..+...-...++...++ .. +. ...+
T Consensus 86 ~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~ 165 (762)
T TIGR03714 86 NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNS 165 (762)
T ss_pred ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCC
Confidence 57889999999999887764 2456799999999999999999876554333455554443 11 11 1468
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccc----cccccCCCCCcccccch-hhhhhhh----
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK----NVEKDDAAVPEDEFGAK-DYRAQMV---- 168 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~----~~~~~~~~~~~~~f~~~-d~~~~~~---- 168 (552)
+|+++|++.|....-+..-.. ....+....+.++|+||||...... .+.+.........|... .+...+.
T Consensus 166 dIvygTp~~LgfDyLrD~l~~-~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~d 244 (762)
T TIGR03714 166 DIVYTTNSALGFDYLIDNLAS-NKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVD 244 (762)
T ss_pred CEEEECchhhhhhHHHHHhhc-chhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCC
Confidence 999999998853211100000 0001112578899999998864322 22222222222222211 1111111
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceeccc
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRE 248 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~ 248 (552)
..-+...+.+|+.+.|...++.+-... .+++ +. .....+.+...+.+++.+-----.+-.
T Consensus 245 y~~d~~~~~v~lt~~G~~~~e~~~~~~-~l~~-----------~~--------~~~~~~~i~~al~A~~~~~~d~dYiV~ 304 (762)
T TIGR03714 245 YIFKKDKKEVWLTDKGIEKAEQYFKID-NLYS-----------EE--------YFELVRHINLALRAHYLFKRNKDYVVT 304 (762)
T ss_pred eEEEcCCCeeeecHhHHHHHHHHcCCC-ccCC-----------hh--------hHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 112345677788776643333211000 0000 00 001111122222222111000000001
Q ss_pred ccchhhhhhhhcccccccCHH----HHHH--cCCCcceEE---E-----------EEEcCCCH-------HHHHHHHh--
Q psy11640 249 DDKIADLNFLIGPKLYEANWL----ELQK--RGFIARVQC---A-----------EVWCPMSP-------EFYREYLV-- 299 (552)
Q Consensus 249 d~~~~~L~~lig~~~~~~~~~----el~~--~g~l~~~~~---~-----------~v~~~l~~-------~~~~~y~~-- 299 (552)
|+.+..+....|..+-...|. ++++ .|.-..... . .-.+.||. ++..-|.-
T Consensus 305 ~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v 384 (762)
T TIGR03714 305 NGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSV 384 (762)
T ss_pred CCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCE
Confidence 222111222233332222232 2221 111100000 0 00111211 11111110
Q ss_pred --hhhh-------hhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHH
Q psy11640 300 --CKTS-------KRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERI 365 (552)
Q Consensus 300 --~~~~-------~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~ 365 (552)
.++. .....+.....|+.++...+......+.++||||.++..++.+...| + +..+||++.+.||.
T Consensus 385 ~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ 464 (762)
T TIGR03714 385 VKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQ 464 (762)
T ss_pred EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHH
Confidence 0000 01122334456888777766654457899999999999999999998 3 45799999999998
Q ss_pred HHHHhhccCCCeeEEEEeCccccccCCC---------CCCEEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 366 QILQNFKLNPKVNTIFVSKVADTSFDLP---------EANVLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 366 ~il~~F~~~g~~~vLv~T~v~~~GlDlp---------~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
.+...|+. | .|+|+|+++++|+|+| ++++|+.++ ++..+.. .||+||+||.|..
T Consensus 465 ii~~ag~~-g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~-~ps~rid-~qr~GRtGRqG~~ 527 (762)
T TIGR03714 465 IIAEAGQK-G--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTER-MENSRVD-LQLRGRSGRQGDP 527 (762)
T ss_pred HHHHcCCC-C--eEEEEccccccccCCCCCccccccCCeEEEEecC-CCCcHHH-HHhhhcccCCCCc
Confidence 88888874 4 7999999999999999 999999999 5765555 9999999998763
No 73
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=2.9e-23 Score=240.95 Aligned_cols=332 Identities=17% Similarity=0.215 Sum_probs=228.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHh---c----CCcEEEEecCchhHHHHHHHHHhhhCCCCCc-EEEEecCccc------
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT---V----RKRALVLCNSGVSVEQWKHQFKLWSTADDSM-ICRFTSEAKD------ 92 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~---~----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~-I~~~~g~~~~------ 92 (552)
...+++.-.+|+|||+++++++.. . .+++||+||++ ++.+|.+++.+|. +... +..+.|....
T Consensus 358 ~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~--~~~~~~~~~~g~~~~~~~~~~ 434 (866)
T COG0553 358 LLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFA--PDLRLVLVYHGEKSELDKKRE 434 (866)
T ss_pred cCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhC--ccccceeeeeCCcccccHHHH
Confidence 455666689999999999998853 1 35899999976 7789999999998 4455 7788887641
Q ss_pred CC---CC------CcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhh
Q psy11640 93 KP---MG------CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDY 163 (552)
Q Consensus 93 ~~---~~------~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~ 163 (552)
.. .. .+|+++||+.+.... .....+....|+.+|+||||....
T Consensus 435 ~~~~~~~~~~~~~~~v~itty~~l~~~~-------~~~~~l~~~~~~~~v~DEa~~ikn--------------------- 486 (866)
T COG0553 435 ALRDLLKLHLVIIFDVVITTYELLRRFL-------VDHGGLKKIEWDRVVLDEAHRIKN--------------------- 486 (866)
T ss_pred HHHHHhhhcccceeeEEechHHHHHHhh-------hhHHHHhhceeeeeehhhHHHHhh---------------------
Confidence 11 11 689999999885411 134556778999999998876221
Q ss_pred hhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecc
Q psy11640 164 RAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTA 243 (552)
Q Consensus 164 ~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTA 243 (552)
..+..+..+. .+++.+++.||+
T Consensus 487 ---------------------------------------------------------~~s~~~~~l~-~~~~~~~~~Ltg 508 (866)
T COG0553 487 ---------------------------------------------------------DQSSEGKALQ-FLKALNRLDLTG 508 (866)
T ss_pred ---------------------------------------------------------hhhHHHHHHH-HHhhcceeeCCC
Confidence 1122333333 677888899999
Q ss_pred eecccccc-hhhhhh-hhcccccccCHH------------------------------HHHHcC-------------CCc
Q psy11640 244 TLLREDDK-IADLNF-LIGPKLYEANWL------------------------------ELQKRG-------------FIA 278 (552)
Q Consensus 244 Tp~r~d~~-~~~L~~-lig~~~~~~~~~------------------------------el~~~g-------------~l~ 278 (552)
||+.+... ...+.. ++-|..+..... .++..- .++
T Consensus 509 TPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp 588 (866)
T COG0553 509 TPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKELP 588 (866)
T ss_pred ChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCC
Confidence 99754211 222333 333433331100 111000 111
Q ss_pred ceEEEEEEcCCCHHHHHHHHhhhh-------------hh----------hh---------hHHhc---------------
Q psy11640 279 RVQCAEVWCPMSPEFYREYLVCKT-------------SK----------RL---------LLYVM--------------- 311 (552)
Q Consensus 279 ~~~~~~v~~~l~~~~~~~y~~~~~-------------~~----------~~---------~~~~~--------------- 311 (552)
+.....+.|.+++.+...|..... .. .. ...+.
T Consensus 589 ~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~ 668 (866)
T COG0553 589 PKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDR 668 (866)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccccch
Confidence 111122445666533222221100 00 00 00111
Q ss_pred --------------------Cc-hhHHHHHHHH-HHHhhcCC--eEEEEeccHHHHHHHHHHc---C--CceEeCCCCHH
Q psy11640 312 --------------------NP-NKYRATQYLI-AYHERRGD--KTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQS 362 (552)
Q Consensus 312 --------------------~~-~K~~~l~~Ll-~~~~~~g~--kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~ 362 (552)
.. .|...+.+++ ......+. ++|||++.+.+++.+...+ + +..++|+++..
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~ 748 (866)
T COG0553 669 IVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAK 748 (866)
T ss_pred hhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChh
Confidence 11 6788888888 66667888 9999999999999998887 3 56799999999
Q ss_pred HHHHHHHhhccCCCeeEEEEe-CccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 363 ERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 363 eR~~il~~F~~~g~~~vLv~T-~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+|+.+++.|+++....|++.| ++||.|+|+..|++||++| ++|||....|++.|++|.||.+ .|.||++++.+
T Consensus 749 ~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d-~~wnp~~~~Qa~dRa~RigQ~~-----~v~v~r~i~~~ 822 (866)
T COG0553 749 RRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFD-PWWNPAVELQAIDRAHRIGQKR-----PVKVYRLITRG 822 (866)
T ss_pred hHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEec-cccChHHHHHHHHHHHHhcCcc-----eeEEEEeecCC
Confidence 999999999975467777775 9999999999999999999 6999999999999999999976 69999999999
Q ss_pred chhhHHHHHHHH
Q psy11640 442 TMEMSYSRKRQR 453 (552)
Q Consensus 442 t~e~~~~~~r~~ 453 (552)
|+|+++......
T Consensus 823 tiEe~i~~~~~~ 834 (866)
T COG0553 823 TIEEKILELQEK 834 (866)
T ss_pred cHHHHHHHHHHH
Confidence 999999875444
No 74
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.90 E-value=7.6e-23 Score=225.83 Aligned_cols=292 Identities=15% Similarity=0.163 Sum_probs=194.5
Q ss_pred hhhccCeecCCCCchhHHHHHHHH----hc-------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC----TV-------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK- 93 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~----~~-------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~- 93 (552)
.-+.-++++|||+|||++|+.++. .. +-.+|.|.|.++|.+...+.+..|++..+..|.+-+|+..+.
T Consensus 36 ~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~e 115 (814)
T COG1201 36 SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSE 115 (814)
T ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHH
Confidence 345678999999999999987653 22 125899999999999999999998876667889999987542
Q ss_pred -----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhh
Q psy11640 94 -----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMV 168 (552)
Q Consensus 94 -----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~ 168 (552)
.+.++|+|||+++|...... .+..+.| .+...+|+||.|-...++-
T Consensus 116 r~r~~~~PPdILiTTPEsL~lll~~----~~~r~~l--~~vr~VIVDEiHel~~sKR----------------------- 166 (814)
T COG1201 116 KQKMLKNPPHILITTPESLAILLNS----PKFRELL--RDVRYVIVDEIHALAESKR----------------------- 166 (814)
T ss_pred hhhccCCCCcEEEeChhHHHHHhcC----HHHHHHh--cCCcEEEeehhhhhhcccc-----------------------
Confidence 25689999999988533111 1344555 6889999999886432110
Q ss_pred cCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceeccc
Q psy11640 169 LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRE 248 (552)
Q Consensus 169 l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~ 248 (552)
.+|..- . ..++........++|||||.-..
T Consensus 167 ------------------------------------------------G~~Lsl-~-LeRL~~l~~~~qRIGLSATV~~~ 196 (814)
T COG1201 167 ------------------------------------------------GVQLAL-S-LERLRELAGDFQRIGLSATVGPP 196 (814)
T ss_pred ------------------------------------------------chhhhh-h-HHHHHhhCcccEEEeehhccCCH
Confidence 111111 0 11122222257799999997532
Q ss_pred ccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhh
Q psy11640 249 DDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHER 328 (552)
Q Consensus 249 d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~ 328 (552)
+. .-.++.|.. . ..+++.-....++.+ .+.+|-..- .+. ......-+..+.++++.|
T Consensus 197 ~~---varfL~g~~-~---~~~Iv~~~~~k~~~i-~v~~p~~~~---~~~----------~~~~~~~~~~i~~~v~~~-- 253 (814)
T COG1201 197 EE---VAKFLVGFG-D---PCEIVDVSAAKKLEI-KVISPVEDL---IYD----------EELWAALYERIAELVKKH-- 253 (814)
T ss_pred HH---HHHHhcCCC-C---ceEEEEcccCCcceE-EEEecCCcc---ccc----------cchhHHHHHHHHHHHhhc--
Confidence 21 112222221 0 001111111112221 122221110 000 001112334455555544
Q ss_pred cCCeEEEEeccHHHHHHHHHHc------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEec
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQIS 402 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~ 402 (552)
..+|||++++.+++.++..| .+...||+++.+.|..+.++|++ |+++++|||+.++.|||+-+++.||++.
T Consensus 254 --~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lravV~TSSLELGIDiG~vdlVIq~~ 330 (814)
T COG1201 254 --RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKAVVATSSLELGIDIGDIDLVIQLG 330 (814)
T ss_pred --CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceEEEEccchhhccccCCceEEEEeC
Confidence 48999999999999999887 35678999999999999999996 8999999999999999999999999999
Q ss_pred cCCCChhhHHHHhhhccccCC
Q psy11640 403 SHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 403 ~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
| |.+-..++||+||+|+.-.
T Consensus 331 S-P~sV~r~lQRiGRsgHr~~ 350 (814)
T COG1201 331 S-PKSVNRFLQRIGRAGHRLG 350 (814)
T ss_pred C-cHHHHHHhHhccccccccC
Confidence 7 8889999999999987443
No 75
>KOG0347|consensus
Probab=99.90 E-value=8.1e-24 Score=216.94 Aligned_cols=298 Identities=18% Similarity=0.183 Sum_probs=186.7
Q ss_pred cCeecCCCCchhHHHHHHHHh-----------------cCCc--EEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT-----------------VRKR--ALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA 90 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~-----------------~~~~--~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~ 90 (552)
-+|-+-||+|||+++...|.. .+.+ .|||+||++|+.|..+.|......+..++..++|+-
T Consensus 222 IlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGL 301 (731)
T KOG0347|consen 222 ILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGL 301 (731)
T ss_pred cccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechh
Confidence 467789999999986544432 1233 899999999999999999877766667888888875
Q ss_pred cc----C--CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhh
Q psy11640 91 KD----K--PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYR 164 (552)
Q Consensus 91 ~~----~--~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~ 164 (552)
.. + ...++|||+|++.|...... ...+...+ ....++|+||+.|+-...++
T Consensus 302 avqKQqRlL~~~p~IVVATPGRlweli~e---~n~~l~~~--k~vkcLVlDEaDRmvekghF------------------ 358 (731)
T KOG0347|consen 302 AVQKQQRLLNQRPDIVVATPGRLWELIEE---DNTHLGNF--KKVKCLVLDEADRMVEKGHF------------------ 358 (731)
T ss_pred HHHHHHHHHhcCCCEEEecchHHHHHHHh---hhhhhhhh--hhceEEEEccHHHHhhhccH------------------
Confidence 21 1 14689999999977432111 11122233 56789999997653221111
Q ss_pred hhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh------ccce
Q psy11640 165 AQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ------SHCK 238 (552)
Q Consensus 165 ~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~------~~~~ 238 (552)
.-++.++..+. ....
T Consensus 359 -----------------------------------------------------------~Els~lL~~L~e~~~~~qrQT 379 (731)
T KOG0347|consen 359 -----------------------------------------------------------EELSKLLKHLNEEQKNRQRQT 379 (731)
T ss_pred -----------------------------------------------------------HHHHHHHHHhhhhhcccccce
Confidence 11122222222 2356
Q ss_pred eeecceecccccchhhhhhhh---cc-cccccCHHHHH-HcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCc
Q psy11640 239 LGLTATLLREDDKIADLNFLI---GP-KLYEANWLELQ-KRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNP 313 (552)
Q Consensus 239 lgLTATp~r~d~~~~~L~~li---g~-~~~~~~~~el~-~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~ 313 (552)
+.+|||..-- ....+...- +. .-+.....-|+ .-|+-.++.+ +++++..... ......++.|.-.
T Consensus 380 lVFSATlt~~--~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpki----iD~t~q~~ta----~~l~Es~I~C~~~ 449 (731)
T KOG0347|consen 380 LVFSATLTLV--LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKI----IDLTPQSATA----STLTESLIECPPL 449 (731)
T ss_pred EEEEEEeehh--hcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCee----EecCcchhHH----HHHHHHhhcCCcc
Confidence 8889986421 000000000 00 00111122222 2244444332 3333322100 0001112222222
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHcC---C--ceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcccc
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMN---K--PYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADT 388 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~---~--~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~ 388 (552)
.|--.|.++|..+ ++++||||+.++.+..|...|+ + ..+|..|.+.+|..-|++|++ ..--|||||+|+++
T Consensus 450 eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~-~~~~VLiaTDVAAR 525 (731)
T KOG0347|consen 450 EKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQ-SPSGVLIATDVAAR 525 (731)
T ss_pred ccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhc-CCCeEEEeehhhhc
Confidence 3333333344433 5689999999999999999883 3 358999999999999999996 46789999999999
Q ss_pred ccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 389 SFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 389 GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
|||||.+.+||+|. .|.+..-|+||-||..|++..
T Consensus 526 GLDIp~V~HVIHYq-VPrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 526 GLDIPGVQHVIHYQ-VPRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred cCCCCCcceEEEee-cCCccceeEecccccccccCC
Confidence 99999999999999 688899999999999999874
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2e-22 Score=223.61 Aligned_cols=368 Identities=14% Similarity=0.145 Sum_probs=201.3
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcc-cC----CCCCcEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-DK----PMGCGIL 100 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~-~~----~~~~~Iv 100 (552)
..++.|+||+|||++++.++. ..+..++||+||..|+.|-.+.+..+...-...++++.|+.. .. ...++|+
T Consensus 93 G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIv 172 (790)
T PRK09200 93 GNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYEADII 172 (790)
T ss_pred CceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEE
Confidence 348899999999999887665 357899999999999999888888777655567888877654 21 1458999
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccc----cccCCCCCcccccch-hhhhhh----hcCC
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNV----EKDDAAVPEDEFGAK-DYRAQM----VLKP 171 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~----~~~~~~~~~~~f~~~-d~~~~~----~l~~ 171 (552)
++|++.+....-+..-.... .......+.++|+||++...-.... .+.........|... .+...+ ...-
T Consensus 173 ygT~~~l~fDyLrd~~~~~~-~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~ 251 (790)
T PRK09200 173 YTTNSELGFDYLRDNLADSK-EDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEF 251 (790)
T ss_pred EECCccccchhHHhccccch-hhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEE
Confidence 99988774321111000000 1112367889999998875443221 222211122222111 111111 0111
Q ss_pred CCCCCCccccCCCcccccccc---chhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceeccc
Q psy11640 172 DHKSRPLWVAPNGHIFLESFS---PVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRE 248 (552)
Q Consensus 172 ~~~~r~~~~~~~g~i~~~~~~---~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~ 248 (552)
+...+..|+.+.|-..++.+. +.|.... ......+...+.+++.+-----.+-.
T Consensus 252 d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~-----------------------~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 252 DEEKKEVWLTDQGIEKAESYFGIDNLYSLEH-----------------------QVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ecCCCeEEecHhHHHHHHHhcCCccccChhh-----------------------hHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 234455666665533222210 1111000 00011111122221110000000001
Q ss_pred ccchhhhhhhhcccccccCHH----HHHHc--CCCcceEEEE--------------EEcCCC-------HHHHHHHHh--
Q psy11640 249 DDKIADLNFLIGPKLYEANWL----ELQKR--GFIARVQCAE--------------VWCPMS-------PEFYREYLV-- 299 (552)
Q Consensus 249 d~~~~~L~~lig~~~~~~~~~----el~~~--g~l~~~~~~~--------------v~~~l~-------~~~~~~y~~-- 299 (552)
|+.+..+....|..+-...|. ++++. |.-....... -...|| .++...|--
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v 388 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcE
Confidence 111111112223222222222 22211 1100000000 000111 011111100
Q ss_pred --hhhhh-------hhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHH
Q psy11640 300 --CKTSK-------RLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERI 365 (552)
Q Consensus 300 --~~~~~-------~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~ 365 (552)
.++.+ ....+.....|+.++..++......+.++||||.++..++.++..| + +..+||.+.+.++.
T Consensus 389 ~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~ 468 (790)
T PRK09200 389 VQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQ 468 (790)
T ss_pred EECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHH
Confidence 00000 0112233346888777777554457889999999999999999998 3 46799999999998
Q ss_pred HHHHhhccCCCeeEEEEeCccccccCC---CCCC-----EEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 366 QILQNFKLNPKVNTIFVSKVADTSFDL---PEAN-----VLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 366 ~il~~F~~~g~~~vLv~T~v~~~GlDl---p~a~-----~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
.+...++. | +|+|+|+++++|+|+ |.++ +||.++ .|.|++.|.||+||+||.|..
T Consensus 469 ~i~~ag~~-g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d-~p~s~r~y~qr~GRtGR~G~~ 531 (790)
T PRK09200 469 IIAEAGQK-G--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTE-RMESRRVDLQLRGRSGRQGDP 531 (790)
T ss_pred HHHHcCCC-C--eEEEEccchhcCcCCCcccccccccCcEEEecc-CCCCHHHHHHhhccccCCCCC
Confidence 88888874 4 799999999999999 7998 999999 699999999999999998763
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=1.2e-22 Score=211.41 Aligned_cols=279 Identities=16% Similarity=0.165 Sum_probs=165.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCC----CCCcEEEEecCcccC------------
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTA----DDSMICRFTSEAKDK------------ 93 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~----~~~~I~~~~g~~~~~------------ 93 (552)
.++++|||+|||++++.++.....++++++|+++|++||.+.++.++.. ....+..++|+....
T Consensus 17 ~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~ 96 (357)
T TIGR03158 17 IFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSS 96 (357)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccC
Confidence 3568999999999999888777778999999999999999999987731 234566666652110
Q ss_pred --------------CCCCcEEEEcccccccccccchhHH--HHHHHHhcCcccEEEEccCCcccccccccccCCCCCccc
Q psy11640 94 --------------PMGCGILVTTYSMISHTQKRSWEAD--QTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDE 157 (552)
Q Consensus 94 --------------~~~~~IvItTy~~l~~~~~~~~~~~--~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~ 157 (552)
...+.|++||++++.....+.+... ....++ ..+++||+||+|.-.... .
T Consensus 97 ~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~--~~~~~iV~DE~H~~~~~~-~----------- 162 (357)
T TIGR03158 97 KGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY--TKFSTVIFDEFHLYDAKQ-L----------- 162 (357)
T ss_pred ccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh--cCCCEEEEecccccCccc-c-----------
Confidence 1246789999998854221110000 011122 579999999988632100 0
Q ss_pred ccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-cc
Q psy11640 158 FGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SH 236 (552)
Q Consensus 158 f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~ 236 (552)
......-.+..++.... ..
T Consensus 163 ------------------------------------------------------------~~~~~~l~~~~~~~~~~~~~ 182 (357)
T TIGR03158 163 ------------------------------------------------------------VGMLFLLAYMQLIRFFECRR 182 (357)
T ss_pred ------------------------------------------------------------hhhhhhhHHHHHHHhhhcCC
Confidence 00000000011111111 35
Q ss_pred ceeeecceecccccchhhhhhh--hcccccc--------cCHHHHHHc----CCC---cceEEEEEEcCCCHHHHHHHHh
Q psy11640 237 CKLGLTATLLREDDKIADLNFL--IGPKLYE--------ANWLELQKR----GFI---ARVQCAEVWCPMSPEFYREYLV 299 (552)
Q Consensus 237 ~~lgLTATp~r~d~~~~~L~~l--ig~~~~~--------~~~~el~~~----g~l---~~~~~~~v~~~l~~~~~~~y~~ 299 (552)
..+++||||.. .....|... +|..+.. .+..|+... ++- ++..... .+ .+
T Consensus 183 ~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~-~~-------- 249 (357)
T TIGR03158 183 KFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELEL--IP-AP-------- 249 (357)
T ss_pred cEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEE--Ee-CC--------
Confidence 78999999842 223333332 2211100 011122111 110 1111100 00 00
Q ss_pred hhhhhhhhHHhcCchhHHHHHH----HHHHHh-hcCCeEEEEeccHHHHHHHHHHcC-------CceEeCCCCHHHHHHH
Q psy11640 300 CKTSKRLLLYVMNPNKYRATQY----LIAYHE-RRGDKTIVFSDNVFALKHYAVKMN-------KPYIYGPTSQSERIQI 367 (552)
Q Consensus 300 ~~~~~~~~~~~~~~~K~~~l~~----Ll~~~~-~~g~kvIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~i 367 (552)
..|...+.. +++... ..+.++||||+++..++.++..|. +..+||.+++.+|.++
T Consensus 250 -------------~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 250 -------------DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA 316 (357)
T ss_pred -------------chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh
Confidence 112222222 222221 257799999999999999999883 2458999999998754
Q ss_pred HHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhcc
Q psy11640 368 LQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRIL 419 (552)
Q Consensus 368 l~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~ 419 (552)
.+..+||+|+++++|||+|.. +|| ++ +.+...|+||+||+|
T Consensus 317 -------~~~~iLVaTdv~~rGiDi~~~-~vi-~~--p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 -------MQFDILLGTSTVDVGVDFKRD-WLI-FS--ARDAAAFWQRLGRLG 357 (357)
T ss_pred -------ccCCEEEEecHHhcccCCCCc-eEE-EC--CCCHHHHhhhcccCC
Confidence 267899999999999999975 555 44 678899999999986
No 78
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.90 E-value=2.2e-22 Score=207.44 Aligned_cols=290 Identities=19% Similarity=0.181 Sum_probs=192.7
Q ss_pred ccCeecCCCCchhHHHHHHH----HhcCCcEEEEecCchhHHHHHHHHH-hhhCCCCCcEEEEecCc--cc--------C
Q psy11640 29 KKKKKKRPSAGKSLVGVTAC----CTVRKRALVLCNSGVSVEQWKHQFK-LWSTADDSMICRFTSEA--KD--------K 93 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i----~~~~~~~LIl~Pt~~Lv~Qw~~e~~-~~~~~~~~~I~~~~g~~--~~--------~ 93 (552)
-.++|.||++|||+++-.+- ...+++.|+|||..+|++|-+++|+ +|..+. ..+.+-.|.. +. .
T Consensus 234 nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg-lkvairVG~srIk~~~~pv~~~t 312 (830)
T COG1202 234 NLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLG-LKVAIRVGMSRIKTREEPVVVDT 312 (830)
T ss_pred ceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhccc-ceEEEEechhhhcccCCccccCC
Confidence 35789999999999875542 2447899999999999999999998 555432 2332222322 11 1
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCC
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 173 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 173 (552)
...++|+|+||+-+.+..... ..+ .+++.+|+||.|.... .
T Consensus 313 ~~dADIIVGTYEGiD~lLRtg-------~~l--gdiGtVVIDEiHtL~d------e------------------------ 353 (830)
T COG1202 313 SPDADIIVGTYEGIDYLLRTG-------KDL--GDIGTVVIDEIHTLED------E------------------------ 353 (830)
T ss_pred CCCCcEEEeechhHHHHHHcC-------Ccc--cccceEEeeeeeeccc------h------------------------
Confidence 256899999999663321000 112 6899999998876211 0
Q ss_pred CCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchh
Q psy11640 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIA 253 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~ 253 (552)
|--+--.....++-..++....|+||||.-.+ .
T Consensus 354 -------------------------------------------ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp----~ 386 (830)
T COG1202 354 -------------------------------------------ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP----E 386 (830)
T ss_pred -------------------------------------------hcccchhhHHHHHHHhCCCCeEEEEEeecCCh----H
Confidence 00000112223344445567789999997432 3
Q ss_pred hhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHh----hc
Q psy11640 254 DLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE----RR 329 (552)
Q Consensus 254 ~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~----~~ 329 (552)
.|-..+|.++..++- -.+|+. .+.++......|+.++..|.+... +.
T Consensus 387 elA~~l~a~lV~y~~----------------RPVplE-------------rHlvf~~~e~eK~~ii~~L~k~E~~~~ssk 437 (830)
T COG1202 387 ELAKKLGAKLVLYDE----------------RPVPLE-------------RHLVFARNESEKWDIIARLVKREFSTESSK 437 (830)
T ss_pred HHHHHhCCeeEeecC----------------CCCChh-------------HeeeeecCchHHHHHHHHHHHHHHhhhhcc
Confidence 333334433322211 111111 011112224567777777775432 11
Q ss_pred --CCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE--
Q psy11640 330 --GDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ-- 400 (552)
Q Consensus 330 --g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~-- 400 (552)
.+++|||+.++..++.|+..| .+..+|++++..+|+.+-..|.. +++.++|+|.+++-|+|+| |+.||+
T Consensus 438 g~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~VVTTAAL~AGVDFP-ASQVIFEs 515 (830)
T COG1202 438 GYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAAVVTTAALAAGVDFP-ASQVIFES 515 (830)
T ss_pred CcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcceEeehhhhhcCCCCc-hHHHHHHH
Confidence 248999999999999999999 35679999999999999999995 8999999999999999999 677776
Q ss_pred --eccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 401 --ISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 401 --~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+.-.|-|++.|.|+.||+||++-.- ...||-++..|
T Consensus 516 LaMG~~WLs~~EF~QM~GRAGRp~yHd-----rGkVyllvepg 553 (830)
T COG1202 516 LAMGIEWLSVREFQQMLGRAGRPDYHD-----RGKVYLLVEPG 553 (830)
T ss_pred HHcccccCCHHHHHHHhcccCCCCccc-----CceEEEEecCC
Confidence 2223679999999999999987632 36688888765
No 79
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.1e-22 Score=212.80 Aligned_cols=289 Identities=15% Similarity=0.112 Sum_probs=196.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcc-c-C--------CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-D-K--------PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~-~-~--------~~~~ 97 (552)
+..+++||||.||++++..++.-..+.+|||.|..+|.....+.++... ..+..+.+... + + ....
T Consensus 33 ~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~ 108 (590)
T COG0514 33 KDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQL 108 (590)
T ss_pred CcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcC----ceeehhhcccCHHHHHHHHHHHhcCce
Confidence 6789999999999999998887778899999999999998888888654 34444444421 1 1 1336
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+++..+++.+... ..++.|....+.++++||||-... +.|-| ||
T Consensus 109 klLyisPErl~~~--------~f~~~L~~~~i~l~vIDEAHCiSq-----------WGhdF-----------------RP 152 (590)
T COG0514 109 KLLYISPERLMSP--------RFLELLKRLPISLVAIDEAHCISQ-----------WGHDF-----------------RP 152 (590)
T ss_pred eEEEECchhhcCh--------HHHHHHHhCCCceEEechHHHHhh-----------cCCcc-----------------CH
Confidence 8899999988653 466777788999999999986321 11111 11
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNF 257 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~ 257 (552)
++ .....+...++...++.||||-... ...++..
T Consensus 153 ---------------------------------------~Y-----~~lg~l~~~~~~~p~~AlTATA~~~--v~~DI~~ 186 (590)
T COG0514 153 ---------------------------------------DY-----RRLGRLRAGLPNPPVLALTATATPR--VRDDIRE 186 (590)
T ss_pred ---------------------------------------hH-----HHHHHHHhhCCCCCEEEEeCCCChH--HHHHHHH
Confidence 11 1223345566667899998885321 1222222
Q ss_pred hhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEe
Q psy11640 258 LIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFS 337 (552)
Q Consensus 258 lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~ 337 (552)
.++-. ...+ +...+..+. -++.. ......+.+.. .+.+.....+...||||
T Consensus 187 ~L~l~----------------~~~~--~~~sfdRpN--i~~~v--------~~~~~~~~q~~-fi~~~~~~~~~~GIIYc 237 (590)
T COG0514 187 QLGLQ----------------DANI--FRGSFDRPN--LALKV--------VEKGEPSDQLA-FLATVLPQLSKSGIIYC 237 (590)
T ss_pred HhcCC----------------Ccce--EEecCCCch--hhhhh--------hhcccHHHHHH-HHHhhccccCCCeEEEE
Confidence 11111 1000 000111000 00000 00001122222 33321223556789999
Q ss_pred ccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHH
Q psy11640 338 DNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEA 412 (552)
Q Consensus 338 ~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~ 412 (552)
.++..++.++..| ++..+||+++.++|..+-++|.. ++++|+|||.+.|.|||-|++..||+++ .|.|...|.
T Consensus 238 ~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~iiVAT~AFGMGIdKpdVRfViH~~-lP~s~EsYy 315 (590)
T COG0514 238 LTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKVMVATNAFGMGIDKPDVRFVIHYD-LPGSIESYY 315 (590)
T ss_pred eeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEEeccccCccCCCCceEEEEec-CCCCHHHHH
Confidence 9999999999999 46789999999999999999995 7999999999999999999999999999 699999999
Q ss_pred HHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 413 QRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 413 Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
|-+||+||.|. .+..+.|.+.
T Consensus 316 QE~GRAGRDG~-------~a~aill~~~ 336 (590)
T COG0514 316 QETGRAGRDGL-------PAEAILLYSP 336 (590)
T ss_pred HHHhhccCCCC-------cceEEEeecc
Confidence 99999999877 3556666664
No 80
>KOG0332|consensus
Probab=99.90 E-value=4.7e-22 Score=195.81 Aligned_cols=304 Identities=14% Similarity=0.191 Sum_probs=192.0
Q ss_pred ccCeecCCCCchhHHHHHHHH-hc-----CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEE-EEecCc--ccCCCCCcE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC-TV-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMIC-RFTSEA--KDKPMGCGI 99 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~-~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~-~~~g~~--~~~~~~~~I 99 (552)
..++-...|+|||.+++..+. +. .-.++.|+|+++|+.|.-+.+.+.+......+. .+-++. +..+....|
T Consensus 131 nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqI 210 (477)
T KOG0332|consen 131 NLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQI 210 (477)
T ss_pred hhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhhe
Confidence 345667889999998766553 33 235888899999999999998876544322222 222221 112345789
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|.|+..+.... .....+.......+++|||..+... .+|+..
T Consensus 211 viGTPGtv~Dlm-------~klk~id~~kikvfVlDEAD~Mi~t------------qG~~D~------------------ 253 (477)
T KOG0332|consen 211 VIGTPGTVLDLM-------LKLKCIDLEKIKVFVLDEADVMIDT------------QGFQDQ------------------ 253 (477)
T ss_pred eeCCCccHHHHH-------HHHHhhChhhceEEEecchhhhhhc------------cccccc------------------
Confidence 999999874310 1112333467889999987442221 111100
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFL 258 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~l 258 (552)
. .++...++ ....+.+|||-.. .....-
T Consensus 254 ------------------------------------------S----~rI~~~lP~~~QllLFSATf~e---~V~~Fa-- 282 (477)
T KOG0332|consen 254 ------------------------------------------S----IRIMRSLPRNQQLLLFSATFVE---KVAAFA-- 282 (477)
T ss_pred ------------------------------------------c----hhhhhhcCCcceEEeeechhHH---HHHHHH--
Confidence 0 01222233 4456778888631 101000
Q ss_pred hcccccccCHHHHHHcCCCcceEEEEEEcC-CC-HHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEE
Q psy11640 259 IGPKLYEANWLELQKRGFIARVQCAEVWCP-MS-PEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336 (552)
Q Consensus 259 ig~~~~~~~~~el~~~g~l~~~~~~~v~~~-l~-~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF 336 (552)
..++.......+... +. +.-++.|+. ......|+++|..|.... .-...|||
T Consensus 283 ---------------~kivpn~n~i~Lk~eel~L~~IkQlyv~---------C~~~~~K~~~l~~lyg~~--tigqsiIF 336 (477)
T KOG0332|consen 283 ---------------LKIVPNANVIILKREELALDNIKQLYVL---------CACRDDKYQALVNLYGLL--TIGQSIIF 336 (477)
T ss_pred ---------------HHhcCCCceeeeehhhccccchhhheee---------ccchhhHHHHHHHHHhhh--hhhheEEE
Confidence 011111111111000 00 001122222 223457888888876655 56689999
Q ss_pred eccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC-----C
Q psy11640 337 SDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG-----G 406 (552)
Q Consensus 337 ~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~-----~ 406 (552)
|+++..+..|...| .+..+||.+...+|..++++|+. |..+|||+|.++++|||++.+++||+||-|. .
T Consensus 337 c~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~p 415 (477)
T KOG0332|consen 337 CHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEP 415 (477)
T ss_pred EeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceEEEEechhhcccccceEEEEEecCCccccCCCC
Confidence 99999999999988 47889999999999999999996 9999999999999999999999999998421 2
Q ss_pred ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHH
Q psy11640 407 SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455 (552)
Q Consensus 407 s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l 455 (552)
++..|+||+||+||-|+. ...++||+.+. .+.+..+-|++.
T Consensus 416 D~etYlHRiGRtGRFGkk-------G~a~n~v~~~~-s~~~mn~iq~~F 456 (477)
T KOG0332|consen 416 DYETYLHRIGRTGRFGKK-------GLAINLVDDKD-SMNIMNKIQKHF 456 (477)
T ss_pred CHHHHHHHhccccccccc-------ceEEEeecccC-cHHHHHHHHHHH
Confidence 577899999999998873 55777887642 233333444443
No 81
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.90 E-value=3.7e-22 Score=225.45 Aligned_cols=287 Identities=15% Similarity=0.137 Sum_probs=180.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCC-CCcEEEEecCcccCCCCCcEEEEc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTAD-DSMICRFTSEAKDKPMGCGILVTT 103 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~-~~~I~~~~g~~~~~~~~~~IvItT 103 (552)
+--++++|||+|||.+....+.. ...+++|++|+++++.|..+.+....+.. ...|+...+..........|+|+|
T Consensus 21 ~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~~~t~I~v~T 100 (812)
T PRK11664 21 PQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEVVT 100 (812)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccCCCCcEEEEC
Confidence 34677899999999987765543 23589999999999999999987655432 234554443332222345799999
Q ss_pred ccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCC
Q psy11640 104 YSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN 183 (552)
Q Consensus 104 y~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~ 183 (552)
.+.|.... .....-.++++||+||+|...-..+
T Consensus 101 ~G~Llr~l---------~~d~~L~~v~~IIlDEaHER~l~~D-------------------------------------- 133 (812)
T PRK11664 101 EGILTRMI---------QRDPELSGVGLVILDEFHERSLQAD-------------------------------------- 133 (812)
T ss_pred hhHHHHHH---------hhCCCcCcCcEEEEcCCCccccccc--------------------------------------
Confidence 99875321 1111126899999999885211000
Q ss_pred CccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhhhcc-
Q psy11640 184 GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGP- 261 (552)
Q Consensus 184 g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~lig~- 261 (552)
+. -.....++..+. ....+.+|||+... .+..+++.
T Consensus 134 -----------------l~--------------------L~ll~~i~~~lr~~lqlilmSATl~~~-----~l~~~~~~~ 171 (812)
T PRK11664 134 -----------------LA--------------------LALLLDVQQGLRDDLKLLIMSATLDND-----RLQQLLPDA 171 (812)
T ss_pred -----------------hH--------------------HHHHHHHHHhCCccceEEEEecCCCHH-----HHHHhcCCC
Confidence 00 000111222222 34578999998421 23333321
Q ss_pred cccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHH
Q psy11640 262 KLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVF 341 (552)
Q Consensus 262 ~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~ 341 (552)
.+... .|-..++. ..+.+..... ++.. .-..++..++. ..++.+|||+++..
T Consensus 172 ~~I~~-------~gr~~pV~--~~y~~~~~~~---~~~~-------------~v~~~l~~~l~---~~~g~iLVFlpg~~ 223 (812)
T PRK11664 172 PVIVS-------EGRSFPVE--RRYQPLPAHQ---RFDE-------------AVARATAELLR---QESGSLLLFLPGVG 223 (812)
T ss_pred CEEEe-------cCccccce--EEeccCchhh---hHHH-------------HHHHHHHHHHH---hCCCCEEEEcCCHH
Confidence 11110 12111211 1222222111 1000 00012233332 24678999999999
Q ss_pred HHHHHHHHcC--------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC--------
Q psy11640 342 ALKHYAVKMN--------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG-------- 405 (552)
Q Consensus 342 ~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~-------- 405 (552)
.++.+++.|. +..+||++++.+|.++++.|++ |..+|||+|+++++|||||++++||..+. +
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkVlvATnIAErsLtIp~V~~VID~Gl-~r~~~yd~~ 301 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKVVLATNIAETSLTIEGIRLVVDSGL-ERVARFDPK 301 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEEEEecchHHhcccccCceEEEECCC-ccccccccc
Confidence 9998888772 3458999999999999999995 89999999999999999999999999542 2
Q ss_pred ----------CChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 406 ----------GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 406 ----------~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
-|..++.||.||+||.++| .+|+|.+..
T Consensus 302 ~g~~~L~~~~iSkasa~QR~GRaGR~~~G--------~cyrL~t~~ 339 (812)
T PRK11664 302 TGLTRLVTQRISQASMTQRAGRAGRLEPG--------ICLHLYSKE 339 (812)
T ss_pred CCcceeEEEeechhhhhhhccccCCCCCc--------EEEEecCHH
Confidence 1345799999999998664 478888764
No 82
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=8.2e-22 Score=214.37 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=88.8
Q ss_pred cCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 311 MNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
....|+.++..++......+.++||||+++..++.++..| .+..+||+++..| +.+..|+. +...|+|+|++
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag-~~g~VlVATdm 530 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAG-QRGRITVATNM 530 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcC-CCCcEEEEccc
Confidence 3446888888888765456788999999999999999998 3567999876554 44455552 45579999999
Q ss_pred cccccCCC---CCC-----EEEEeccCCCChhhHHHHhhhccccCC
Q psy11640 386 ADTSFDLP---EAN-----VLIQISSHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 386 ~~~GlDlp---~a~-----~VI~~~~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
+++|+||+ ++. +||.++ .|.|.+.|.||+||+||.|.
T Consensus 531 AgRGtDI~l~~~V~~~GGLhVI~~d-~P~s~r~y~hr~GRTGRqG~ 575 (656)
T PRK12898 531 AGRGTDIKLEPGVAARGGLHVILTE-RHDSARIDRQLAGRCGRQGD 575 (656)
T ss_pred hhcccCcCCccchhhcCCCEEEEcC-CCCCHHHHHHhcccccCCCC
Confidence 99999999 555 999999 69999999999999999876
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.89 E-value=5.8e-22 Score=216.64 Aligned_cols=368 Identities=14% Similarity=0.130 Sum_probs=200.8
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----CCCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----PMGCGILVT 102 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~IvIt 102 (552)
.++.|+||+|||+++..++. ..+..++||+||..|+.|-.+.+..++..-...++++.|+.... ...++|+++
T Consensus 72 ~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~~dIvyG 151 (745)
T TIGR00963 72 KIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYG 151 (745)
T ss_pred ceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcCCCEEEE
Confidence 47889999999999877653 34678999999999999999998887765556788887764321 134799999
Q ss_pred cccccccccccchhHHHHHHHHhcCcccEEEEccCCccccccc----ccccCCCCCccccc-chhhhhhhh----cCCCC
Q psy11640 103 TYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKN----VEKDDAAVPEDEFG-AKDYRAQMV----LKPDH 173 (552)
Q Consensus 103 Ty~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~----~~~~~~~~~~~~f~-~~d~~~~~~----l~~~~ 173 (552)
|+..|....-+.... ...+.+....++++|+||+|....... +.+.........|. +....+.+. ..-+.
T Consensus 152 T~~rlgfDyLrd~~~-~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de 230 (745)
T TIGR00963 152 TNNELGFDYLRDNMA-HSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDE 230 (745)
T ss_pred CCCchhhHHHhcccc-cchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEec
Confidence 999773321111000 001122347899999999988554221 11111111111111 111111111 11123
Q ss_pred CCCCccccCCCcccccccc---chhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceeccccc
Q psy11640 174 KSRPLWVAPNGHIFLESFS---PVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDD 250 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~---~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~ 250 (552)
..+.+|+.+.|...++.+. .+|.. ........+...+.+++.+-----.+-.|+
T Consensus 231 ~~k~v~Lt~~G~~~~e~~~~~~~ly~~-----------------------~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 287 (745)
T TIGR00963 231 KNRAVLLTEKGIKKAEDLLGVDNLYDL-----------------------ENSPLIHYINNALKAKELFEKDVDYIVRDG 287 (745)
T ss_pred CCCceeECHHHHHHHHHHcCCccccCh-----------------------hhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 3445566555532222110 11100 000111112222222211100000000112
Q ss_pred chhhhhhhhcccccccCHH----HHHH--cCCCcceEEEE--------------EEcCCCH-------HHHHHHHhh---
Q psy11640 251 KIADLNFLIGPKLYEANWL----ELQK--RGFIARVQCAE--------------VWCPMSP-------EFYREYLVC--- 300 (552)
Q Consensus 251 ~~~~L~~lig~~~~~~~~~----el~~--~g~l~~~~~~~--------------v~~~l~~-------~~~~~y~~~--- 300 (552)
.+..+....|..+-...|. ++++ .|.-....... ..+.||. ++..-|--.
T Consensus 288 ~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~ 367 (745)
T TIGR00963 288 EVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVV 367 (745)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEE
Confidence 2111112223322222222 2221 12111100000 0111211 111111100
Q ss_pred -hhhh-------hhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHH
Q psy11640 301 -KTSK-------RLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQI 367 (552)
Q Consensus 301 -~~~~-------~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~i 367 (552)
++.+ ....+.....|+.++...+......|.++||||.++...+.++..| + ...++|. +.+|...
T Consensus 368 IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ 445 (745)
T TIGR00963 368 VPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAE 445 (745)
T ss_pred eCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHH
Confidence 0000 0112223345887665545433468999999999999999999999 4 3468888 7899999
Q ss_pred HHhhccCCCeeEEEEeCccccccCCCC-------CCEEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 368 LQNFKLNPKVNTIFVSKVADTSFDLPE-------ANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 368 l~~F~~~g~~~vLv~T~v~~~GlDlp~-------a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
+-.|.. +...|+|||+++|+|+||+. .-+||.++ .+.|++.+.|++||+||.|..+
T Consensus 446 ii~~ag-~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~-~p~s~ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 446 IIAQAG-RKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTE-RHESRRIDNQLRGRSGRQGDPG 508 (745)
T ss_pred HHHhcC-CCceEEEEeccccCCcCCCccchhhcCCcEEEecC-CCCcHHHHHHHhccccCCCCCc
Confidence 999994 89999999999999999998 55999999 6999999999999999988743
No 84
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.89 E-value=4.3e-22 Score=221.03 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc---CCceEeCCCCHHHHH-----HHHHhhccC---C-------CeeEEEEeCccccc
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM---NKPYIYGPTSQSERI-----QILQNFKLN---P-------KVNTIFVSKVADTS 389 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L---~~~~i~G~~~~~eR~-----~il~~F~~~---g-------~~~vLv~T~v~~~G 389 (552)
..+.++||||+++..++.++..| ++..+||++++.+|. .++++|+.. + ..+|||+|+++++|
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerG 349 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVG 349 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhc
Confidence 36789999999999999999988 567899999999999 889999840 2 26899999999999
Q ss_pred cCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEE
Q psy11640 390 FDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTL 437 (552)
Q Consensus 390 lDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~l 437 (552)
|||+. ++||+... + ...|+||+||++|.+.... ..++++.+
T Consensus 350 LDId~-d~VI~d~a-P--~esyIQRiGRtgR~G~~~~---~~i~vv~~ 390 (844)
T TIGR02621 350 VNISA-DHLVCDLA-P--FESMQQRFGRVNRFGELQA---CQIAVVHL 390 (844)
T ss_pred ccCCc-ceEEECCC-C--HHHHHHHhcccCCCCCCCC---ceEEEEee
Confidence 99986 88887542 3 5789999999999987322 13555544
No 85
>KOG0344|consensus
Probab=99.89 E-value=9.8e-23 Score=211.79 Aligned_cols=287 Identities=19% Similarity=0.207 Sum_probs=187.2
Q ss_pred hhccCeecCCCCchhHHHHHHHHh-----------cCCcEEEEecCchhHHHHHHHHHhhh--CCCCCcEEEEecCccc-
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT-----------VRKRALVLCNSGVSVEQWKHQFKLWS--TADDSMICRFTSEAKD- 92 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~-----------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~--~~~~~~I~~~~g~~~~- 92 (552)
++-.++++|||+|||+...+.+.. .+-+++||.|+++|+.|.+.|+.++. ......+..+......
T Consensus 173 ~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~ 252 (593)
T KOG0344|consen 173 KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPS 252 (593)
T ss_pred ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchh
Confidence 345678899999999998876641 23479999999999999999999887 3333344444443211
Q ss_pred -CC-----CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhh
Q psy11640 93 -KP-----MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQ 166 (552)
Q Consensus 93 -~~-----~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 166 (552)
++ ..++|+|+|+..+.....-.. . .+.-..+..+|+||+....
T Consensus 253 qk~a~~~~~k~dili~TP~ri~~~~~~~~----~--~idl~~V~~lV~dEaD~lf------------------------- 301 (593)
T KOG0344|consen 253 QKPAFLSDEKYDILISTPMRIVGLLGLGK----L--NIDLSKVEWLVVDEADLLF------------------------- 301 (593)
T ss_pred hccchhHHHHHHHHhcCHHHHHHHhcCCC----c--cchhheeeeEeechHHhhh-------------------------
Confidence 11 347899999987643211100 0 0112567779999863311
Q ss_pred hhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhcc--ceeeecce
Q psy11640 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH--CKLGLTAT 244 (552)
Q Consensus 167 ~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~--~~lgLTAT 244 (552)
.| ..|+ .+...++.....+ ++=.+|||
T Consensus 302 -------------------------e~-----~~f~---------------------~Qla~I~sac~s~~i~~a~FSat 330 (593)
T KOG0344|consen 302 -------------------------EP-----EFFV---------------------EQLADIYSACQSPDIRVALFSAT 330 (593)
T ss_pred -------------------------Ch-----hhHH---------------------HHHHHHHHHhcCcchhhhhhhcc
Confidence 01 0011 1111122222222 12234666
Q ss_pred ecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHH
Q psy11640 245 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIA 324 (552)
Q Consensus 245 p~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~ 324 (552)
..- |-..|.+++..+.+. +.+...+... .......+.......|+-+|.+++.
T Consensus 331 ~~~----------------~VEE~~~~i~~~~~~------vivg~~~sa~-----~~V~QelvF~gse~~K~lA~rq~v~ 383 (593)
T KOG0344|consen 331 ISV----------------YVEEWAELIKSDLKR------VIVGLRNSAN-----ETVDQELVFCGSEKGKLLALRQLVA 383 (593)
T ss_pred ccH----------------HHHHHHHHhhcccee------EEEecchhHh-----hhhhhhheeeecchhHHHHHHHHHh
Confidence 421 122233343332211 1222221110 0011122233334578888888888
Q ss_pred HHhhcCCeEEEEeccHHHHHHHHHHcC------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEE
Q psy11640 325 YHERRGDKTIVFSDNVFALKHYAVKMN------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVL 398 (552)
Q Consensus 325 ~~~~~g~kvIVF~~~~~~~~~l~~~L~------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~V 398 (552)
.. -.-.+|||+++.+.+..|...|. +.+|||+.++.+|.+.+++|+. |++.|||+|+++++|+|+.++|+|
T Consensus 384 ~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~IwvLicTdll~RGiDf~gvn~V 460 (593)
T KOG0344|consen 384 SG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWVLICTDLLARGIDFKGVNLV 460 (593)
T ss_pred cc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeEEEehhhhhccccccCcceE
Confidence 65 34589999999999999999883 8899999999999999999997 999999999999999999999999
Q ss_pred EEeccCCCChhhHHHHhhhccccCCCCC
Q psy11640 399 IQISSHGGSRRQEAQRLGRILRAKKGAI 426 (552)
Q Consensus 399 I~~~~~~~s~~q~~Qr~GRi~R~~~~k~ 426 (552)
|+|| .|.+-.+|++|+||+||+++...
T Consensus 461 InyD-~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 461 INYD-FPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred EecC-CCchhHHHHHHhhccCCCCCCcc
Confidence 9999 59999999999999999998643
No 86
>KOG1016|consensus
Probab=99.88 E-value=4.3e-22 Score=209.90 Aligned_cols=150 Identities=23% Similarity=0.331 Sum_probs=126.4
Q ss_pred hcCCeEEEEeccHHHHHHHHHHcC-----------------------CceEeCCCCHHHHHHHHHhhccCCCeeEEE--E
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKMN-----------------------KPYIYGPTSQSERIQILQNFKLNPKVNTIF--V 382 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L~-----------------------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv--~ 382 (552)
.-|.++|||+++...++.|.+.|+ +..++|.++..+|.+++.+|++.+.+..|| +
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlflls 796 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLS 796 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeeh
Confidence 347899999999999999998881 235899999999999999999877777444 4
Q ss_pred eCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCe
Q psy11640 383 SKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSY 462 (552)
Q Consensus 383 T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~ 462 (552)
|+++..||||-.++.+|+++ ..|++.-.+|++.|+.|.||.| .+|||+||...++|.+|+. +.+.+||.+-
T Consensus 797 trag~lGinLIsanr~~ifd-a~wnpchdaqavcRvyrYGQ~K-----pcfvYRlVmD~~lEkkIyd---RQIsKqGmsd 867 (1387)
T KOG1016|consen 797 TRAGSLGINLISANRCIIFD-ACWNPCHDAQAVCRVYRYGQQK-----PCFVYRLVMDNSLEKKIYD---RQISKQGMSD 867 (1387)
T ss_pred hccccccceeeccceEEEEE-eecCccccchhhhhhhhhcCcC-----ceeEEeehhhhhhHHHHHH---HHHhhccchh
Confidence 79999999999999999999 4999999999999999999977 6999999999999999986 4588999999
Q ss_pred eEeecccccccccCCCCCChHHHHHHHHHH
Q psy11640 463 KVITKLAGMEEERGMHYSTRDEQGQLLQQV 492 (552)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 492 (552)
+|++++.-+... +..|-..||+..
T Consensus 868 RvVDd~np~an~------s~Ke~enLl~~~ 891 (1387)
T KOG1016|consen 868 RVVDDANPDANI------SQKELENLLMYD 891 (1387)
T ss_pred hhhcccCccccc------cHHHHHHHhhhh
Confidence 999887655432 566656666543
No 87
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.88 E-value=5.8e-21 Score=215.34 Aligned_cols=287 Identities=17% Similarity=0.158 Sum_probs=178.9
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCC-CCcEEEEecCcccCCCCCcEEEEc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTAD-DSMICRFTSEAKDKPMGCGILVTT 103 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~-~~~I~~~~g~~~~~~~~~~IvItT 103 (552)
.--++++|||+|||.+...++.. .+.+++|+.|+++++.|..+.+.+..+.. ...|+..............|+|+|
T Consensus 18 ~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s~~t~I~v~T 97 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLEVVT 97 (819)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccCCCCcEEEEC
Confidence 34567799999999987766653 34689999999999999999987655432 234443322221112346899999
Q ss_pred ccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCC
Q psy11640 104 YSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN 183 (552)
Q Consensus 104 y~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~ 183 (552)
.+.|.... .....-.++++||+||+|...-..
T Consensus 98 ~G~Llr~l---------~~d~~L~~v~~VIiDEaHER~L~~--------------------------------------- 129 (819)
T TIGR01970 98 EGILTRMI---------QDDPELDGVGALIFDEFHERSLDA--------------------------------------- 129 (819)
T ss_pred CcHHHHHH---------hhCcccccCCEEEEeccchhhhcc---------------------------------------
Confidence 99875321 111112689999999988421000
Q ss_pred CccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhhhcc-
Q psy11640 184 GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGP- 261 (552)
Q Consensus 184 g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~lig~- 261 (552)
|+. -.....+...+. ....+.+|||+... .+..+++.
T Consensus 130 ----------------Dl~--------------------L~ll~~i~~~lr~dlqlIlmSATl~~~-----~l~~~l~~~ 168 (819)
T TIGR01970 130 ----------------DLG--------------------LALALDVQSSLREDLKILAMSATLDGE-----RLSSLLPDA 168 (819)
T ss_pred ----------------chH--------------------HHHHHHHHHhcCCCceEEEEeCCCCHH-----HHHHHcCCC
Confidence 000 001111222222 34578899998421 13333321
Q ss_pred cccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHH
Q psy11640 262 KLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVF 341 (552)
Q Consensus 262 ~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~ 341 (552)
.+... .|-..++. ..+.+..... ++. ......+..++.. .++.+|||++...
T Consensus 169 ~vI~~-------~gr~~pVe--~~y~~~~~~~---~~~-------------~~v~~~l~~~l~~---~~g~iLVFlpg~~ 220 (819)
T TIGR01970 169 PVVES-------EGRSFPVE--IRYLPLRGDQ---RLE-------------DAVSRAVEHALAS---ETGSILVFLPGQA 220 (819)
T ss_pred cEEEe-------cCcceeee--eEEeecchhh---hHH-------------HHHHHHHHHHHHh---cCCcEEEEECCHH
Confidence 11111 12111211 1122211111 000 0011223333332 3568999999999
Q ss_pred HHHHHHHHcC--------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC--------
Q psy11640 342 ALKHYAVKMN--------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG-------- 405 (552)
Q Consensus 342 ~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~-------- 405 (552)
.++.+...|. +..+||++++++|.++++.|++ |..+|||+|+++++|||||++++||.++. +
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkVlVATnIAErgItIp~V~~VID~Gl-~r~~~yd~~ 298 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKVVLATNIAETSLTIEGIRVVIDSGL-ARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEEEEecchHhhcccccCceEEEEcCc-ccccccccc
Confidence 9888877662 3458999999999999999995 89999999999999999999999999652 2
Q ss_pred ----------CChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 406 ----------GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 406 ----------~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
-|..++.||.||+||.++| ..|+|.+..
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~~~G--------~cyrL~t~~ 336 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRLEPG--------VCYRLWSEE 336 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCCCCC--------EEEEeCCHH
Confidence 1345689999999999664 468888764
No 88
>KOG0337|consensus
Probab=99.87 E-value=4.4e-22 Score=198.76 Aligned_cols=287 Identities=19% Similarity=0.199 Sum_probs=204.9
Q ss_pred CeecCCCCchhHHHHHHHH-h------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEE-EEecCcccCC-----CCC
Q psy11640 31 KKKKRPSAGKSLVGVTACC-T------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMIC-RFTSEAKDKP-----MGC 97 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~-~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~-~~~g~~~~~~-----~~~ 97 (552)
.+++-||+|||.+.+..+. . .+-++||+.||++|+.|..+-++.+......+.. .++|+..+.. .+.
T Consensus 62 v~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~np 141 (529)
T KOG0337|consen 62 VGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENP 141 (529)
T ss_pred ceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCC
Confidence 4678999999999877654 2 2458999999999999999888877654444444 5556654421 468
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+|+|+|+..+.+..- .|. |.-....++|+||+.+.-
T Consensus 142 Dii~ATpgr~~h~~v-------em~-l~l~sveyVVfdEadrlf------------------------------------ 177 (529)
T KOG0337|consen 142 DIIIATPGRLLHLGV-------EMT-LTLSSVEYVVFDEADRLF------------------------------------ 177 (529)
T ss_pred CEEEecCceeeeeeh-------hee-ccccceeeeeehhhhHHH------------------------------------
Confidence 999999998865421 122 334678899999863311
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLN 256 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~ 256 (552)
|. -.......++..++ ....+.+|||..+.
T Consensus 178 ---------------------------------------em--gfqeql~e~l~rl~~~~QTllfSatlp~~-------- 208 (529)
T KOG0337|consen 178 ---------------------------------------EM--GFQEQLHEILSRLPESRQTLLFSATLPRD-------- 208 (529)
T ss_pred ---------------------------------------hh--hhHHHHHHHHHhCCCcceEEEEeccCchh--------
Confidence 00 01122233444444 45678899997431
Q ss_pred hhhcccccccCHHHHHHcCCCcceEEE-EEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 257 FLIGPKLYEANWLELQKRGFIARVQCA-EVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 257 ~lig~~~~~~~~~el~~~g~l~~~~~~-~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
.-+..+.|...|..+. .+....++... .....+...+|..+|..++..+. ..++++|
T Consensus 209 -----------lv~fakaGl~~p~lVRldvetkise~lk----------~~f~~~~~a~K~aaLl~il~~~~-~~~~t~v 266 (529)
T KOG0337|consen 209 -----------LVDFAKAGLVPPVLVRLDVETKISELLK----------VRFFRVRKAEKEAALLSILGGRI-KDKQTIV 266 (529)
T ss_pred -----------hHHHHHccCCCCceEEeehhhhcchhhh----------hheeeeccHHHHHHHHHHHhccc-cccceeE
Confidence 2345567777765533 11112222111 11122344577778777877653 2568999
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhh
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 410 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q 410 (552)
|+.+..+++.+...| .+..++|++.+.-|..-+.+|+. ++..+||.|+++.+|+|+|-.+.||+||. |..+..
T Consensus 267 f~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~~~lvvTdvaaRG~diplldnvinyd~-p~~~kl 344 (529)
T KOG0337|consen 267 FVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKTSILVVTDVAARGLDIPLLDNVINYDF-PPDDKL 344 (529)
T ss_pred EecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-CccceEEEehhhhccCCCccccccccccC-CCCCce
Confidence 999999999998888 46789999999999999999996 89999999999999999999999999994 888999
Q ss_pred HHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 411 EAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 411 ~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
|++|+||+.|+|.. .+.|.+|..+
T Consensus 345 FvhRVgr~aragrt-------g~aYs~V~~~ 368 (529)
T KOG0337|consen 345 FVHRVGRVARAGRT-------GRAYSLVAST 368 (529)
T ss_pred EEEEecchhhcccc-------ceEEEEEecc
Confidence 99999999999873 6789999875
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.1e-20 Score=182.72 Aligned_cols=306 Identities=14% Similarity=0.200 Sum_probs=195.1
Q ss_pred hhhccCeecCCCCchhHH---HHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEE
Q psy11640 26 KKKKKKKKKRPSAGKSLV---GVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVT 102 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~---ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvIt 102 (552)
+|.-.++++-||+|||-+ ++..+...+.+++|..|+...+-..+..+++-+ +...|..++|++.+.+...-|+-|
T Consensus 115 ~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF--~~~~I~~Lyg~S~~~fr~plvVaT 192 (441)
T COG4098 115 QKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAF--SNCDIDLLYGDSDSYFRAPLVVAT 192 (441)
T ss_pred hcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhh--ccCCeeeEecCCchhccccEEEEe
Confidence 455678999999999964 566666788999999999988888888888644 345799999998877664444444
Q ss_pred cccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccC
Q psy11640 103 TYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP 182 (552)
Q Consensus 103 Ty~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~ 182 (552)
|.|.+ .+- ..||++|+||. +.|
T Consensus 193 tHQLl--------------rFk--~aFD~liIDEV------------------DAF------------------------ 214 (441)
T COG4098 193 THQLL--------------RFK--QAFDLLIIDEV------------------DAF------------------------ 214 (441)
T ss_pred hHHHH--------------HHH--hhccEEEEecc------------------ccc------------------------
Confidence 55544 222 67999999973 111
Q ss_pred CCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHH-hhhccceeeecceecccccc---hhhhhhh
Q psy11640 183 NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLT-IVQSHCKLGLTATLLREDDK---IADLNFL 258 (552)
Q Consensus 183 ~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~-~~~~~~~lgLTATp~r~d~~---~~~L~~l 258 (552)
.+...+.-.|. +-+ .-.....|.|||||.+.=.. ...+..+
T Consensus 215 ----------------------------------P~~~d~~L~~A-v~~ark~~g~~IylTATp~k~l~r~~~~g~~~~~ 259 (441)
T COG4098 215 ----------------------------------PFSDDQSLQYA-VKKARKKEGATIYLTATPTKKLERKILKGNLRIL 259 (441)
T ss_pred ----------------------------------cccCCHHHHHH-HHHhhcccCceEEEecCChHHHHHHhhhCCeeEe
Confidence 11111111111 111 12245678999999743110 1111111
Q ss_pred hcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHH-HHHHHHHHHhhcCCeEEEEe
Q psy11640 259 IGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYR-ATQYLIAYHERRGDKTIVFS 337 (552)
Q Consensus 259 ig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~-~l~~Ll~~~~~~g~kvIVF~ 337 (552)
.-|..|... -|+-+ ..+|+..- ..++ +.+|+. .|..+|+.+...|..++||.
T Consensus 260 klp~RfH~~--------pLpvP--kf~w~~~~----~k~l-------------~r~kl~~kl~~~lekq~~~~~P~liF~ 312 (441)
T COG4098 260 KLPARFHGK--------PLPVP--KFVWIGNW----NKKL-------------QRNKLPLKLKRWLEKQRKTGRPVLIFF 312 (441)
T ss_pred ecchhhcCC--------CCCCC--ceEEeccH----HHHh-------------hhccCCHHHHHHHHHHHhcCCcEEEEe
Confidence 112222110 01111 11333211 1111 122332 45678888888899999999
Q ss_pred ccHHHHHHHHHHc--C-----CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEecc-CCCChh
Q psy11640 338 DNVFALKHYAVKM--N-----KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISS-HGGSRR 409 (552)
Q Consensus 338 ~~~~~~~~l~~~L--~-----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~-~~~s~~ 409 (552)
++++.++..+..| + +..+|+... .|.+.+++|++ |++.+||+|.++++|+.+|.+++.|+-+- ...+..
T Consensus 313 p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~-G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 313 PEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRD-GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred cchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHc-CceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 9999999998888 2 345555544 79999999995 99999999999999999999999988441 135678
Q ss_pred hHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCC
Q psy11640 410 QEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYS 461 (552)
Q Consensus 410 q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~ 461 (552)
..+|..||+||.-.-- .+ .+.+|. .--+..|.-+.+-.+.++..|+.
T Consensus 390 aLVQIaGRvGRs~~~P--tG-dv~FFH--~G~skaM~~A~keIk~MN~lg~k 436 (441)
T COG4098 390 ALVQIAGRVGRSLERP--TG-DVLFFH--YGKSKAMKQARKEIKEMNKLGFK 436 (441)
T ss_pred HHHHHhhhccCCCcCC--CC-cEEEEe--ccchHHHHHHHHHHHHHHHHhhh
Confidence 8999999999965422 12 333332 23356676676666677777754
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.1e-20 Score=204.10 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=71.1
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCC
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGC 97 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~ 97 (552)
++.+|||+|||.+++.++. ..++++|||+|+.+|+.|+.+.|++.++ ..+.+++|..... ....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~---~~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFG---SQVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhC---CcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4679999999999887664 3467899999999999999999998775 3577888765321 1357
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
+|+|+|.+.+.. ...++++||+||.|.
T Consensus 78 ~IVVGTrsalf~---------------p~~~l~lIIVDEeh~ 104 (505)
T TIGR00595 78 LVVIGTRSALFL---------------PFKNLGLIIVDEEHD 104 (505)
T ss_pred CEEECChHHHcC---------------cccCCCEEEEECCCc
Confidence 899999886521 126899999999875
No 91
>KOG4284|consensus
Probab=99.87 E-value=4.9e-22 Score=206.82 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=192.4
Q ss_pred cCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhC-CCCCcEEEEecCccc-----CCCCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWST-ADDSMICRFTSEAKD-----KPMGC 97 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~-~~~~~I~~~~g~~~~-----~~~~~ 97 (552)
.++-+-.|+|||+++..++.. ..-..+||+||++|+-|..+.|.+... +.+.+..+|.|+... +...+
T Consensus 65 liVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~ 144 (980)
T KOG4284|consen 65 LIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQT 144 (980)
T ss_pred eEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhc
Confidence 345578899999987665542 234699999999999999999987653 234577888887632 22567
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
.|+|+|++.|.... ....+.....+|+|+|||.....+.
T Consensus 145 rIvIGtPGRi~qL~--------el~~~n~s~vrlfVLDEADkL~~t~--------------------------------- 183 (980)
T KOG4284|consen 145 RIVIGTPGRIAQLV--------ELGAMNMSHVRLFVLDEADKLMDTE--------------------------------- 183 (980)
T ss_pred eEEecCchHHHHHH--------HhcCCCccceeEEEeccHHhhhchh---------------------------------
Confidence 89999999886531 1234555778999999863311100
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLN 256 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~ 256 (552)
.++ .....++..++ ....+.+|||..++ +...|.
T Consensus 184 ---------------------------------------sfq----~~In~ii~slP~~rQv~a~SATYp~n--Ldn~Ls 218 (980)
T KOG4284|consen 184 ---------------------------------------SFQ----DDINIIINSLPQIRQVAAFSATYPRN--LDNLLS 218 (980)
T ss_pred ---------------------------------------hHH----HHHHHHHHhcchhheeeEEeccCchh--HHHHHH
Confidence 000 01122334444 45678899997654 112222
Q ss_pred h-hhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 257 F-LIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 257 ~-lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
. +-.|.+...+-.+..=-| -.+++...|..+. -.++ -.-|++.|.+++..+ +=.++||
T Consensus 219 k~mrdp~lVr~n~~d~~L~G---ikQyv~~~~s~nn-svee---------------mrlklq~L~~vf~~i--py~QAlV 277 (980)
T KOG4284|consen 219 KFMRDPALVRFNADDVQLFG---IKQYVVAKCSPNN-SVEE---------------MRLKLQKLTHVFKSI--PYVQALV 277 (980)
T ss_pred HHhcccceeecccCCceeec---hhheeeeccCCcc-hHHH---------------HHHHHHHHHHHHhhC--chHHHHh
Confidence 1 122333222222111001 0111111221110 0000 013566777777655 4458999
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhh
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 410 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q 410 (552)
||+....++-|+.+| .+.+|.|.|++.+|..+++.+++ -.++|||+|+.-++|||-|.+|+||++| +|.+...
T Consensus 278 F~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rILVsTDLtaRGIDa~~vNLVVNiD-~p~d~eT 355 (980)
T KOG4284|consen 278 FCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRILVSTDLTARGIDADNVNLVVNID-APADEET 355 (980)
T ss_pred hhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEEEEecchhhccCCccccceEEecC-CCcchHH
Confidence 999999999999999 36789999999999999999996 6999999999999999999999999999 6999999
Q ss_pred HHHHhhhccccCCC
Q psy11640 411 EAQRLGRILRAKKG 424 (552)
Q Consensus 411 ~~Qr~GRi~R~~~~ 424 (552)
|.|||||+||-|..
T Consensus 356 Y~HRIGRAgRFG~~ 369 (980)
T KOG4284|consen 356 YFHRIGRAGRFGAH 369 (980)
T ss_pred HHHHhhhccccccc
Confidence 99999999999874
No 92
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=2.5e-21 Score=206.86 Aligned_cols=326 Identities=17% Similarity=0.194 Sum_probs=204.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc-CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc-------------
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV-RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD------------- 92 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~-~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~------------- 92 (552)
--|.+++|+||+|||.+++-+...+ ..++|+|||+..|+.|..+|...-..++-..+.+. ++.+.
T Consensus 180 n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVc-SD~kvsrs~eDik~sdl~ 258 (1518)
T COG4889 180 NDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAVC-SDDKVSRSAEDIKASDLP 258 (1518)
T ss_pred ccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEEe-cCccccccccccccccCC
Confidence 4578999999999999999877543 47899999999999987776554333322222222 22211
Q ss_pred ------------------CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCC
Q psy11640 93 ------------------KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVP 154 (552)
Q Consensus 93 ------------------~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~ 154 (552)
+..+--|+.+|||++-.. .+++ ..-...|++||+|||||....+.-..+
T Consensus 259 ~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i----~eAQ----e~G~~~fDliicDEAHRTtGa~~a~dd----- 325 (1518)
T COG4889 259 IPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRI----KEAQ----EAGLDEFDLIICDEAHRTTGATLAGDD----- 325 (1518)
T ss_pred CCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHH----HHHH----HcCCCCccEEEecchhccccceecccC-----
Confidence 013457899999988432 1111 122368999999999996543322111
Q ss_pred cccccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh
Q psy11640 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ 234 (552)
Q Consensus 155 ~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~ 234 (552)
...| . -+|. -+.+.
T Consensus 326 ~saF------------------------------------------------------t---~vHs---------~~niK 339 (1518)
T COG4889 326 KSAF------------------------------------------------------T---RVHS---------DQNIK 339 (1518)
T ss_pred cccc------------------------------------------------------e---eecC---------cchhH
Confidence 0000 0 2221 12355
Q ss_pred ccceeeecceecccccc--------hh-----hhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhh
Q psy11640 235 SHCKLGLTATLLREDDK--------IA-----DLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCK 301 (552)
Q Consensus 235 ~~~~lgLTATp~r~d~~--------~~-----~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~ 301 (552)
+..||-+||||.--++. .. +-...+||..+..++.++++.+.|..+.+...-++ .+....-+++.
T Consensus 340 a~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd--~~~i~~~~~~~ 417 (1518)
T COG4889 340 AAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVD--KEVIAGVLQSV 417 (1518)
T ss_pred HHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEec--hhhhhhhhhhh
Confidence 67889999999633211 11 22356899999999999999999999987654432 21111111110
Q ss_pred hh-hhhhHHhcCchhHHHHHH-HHHHHh------------hcCCeEEEEeccHHHHHHHHHHc-----------------
Q psy11640 302 TS-KRLLLYVMNPNKYRATQY-LIAYHE------------RRGDKTIVFSDNVFALKHYAVKM----------------- 350 (552)
Q Consensus 302 ~~-~~~~~~~~~~~K~~~l~~-Ll~~~~------------~~g~kvIVF~~~~~~~~~l~~~L----------------- 350 (552)
.. ...-+......|+--+.. |.+... .+-++.|-||.++.+-..++..+
T Consensus 418 ~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~n 497 (1518)
T COG4889 418 LSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKN 497 (1518)
T ss_pred ccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00 000000001111111111 111100 12247778888877766665544
Q ss_pred ---CCceEeCCCCHHHHHHHHH---hhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 351 ---NKPYIYGPTSQSERIQILQ---NFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 351 ---~~~~i~G~~~~~eR~~il~---~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
.+..++|.|...+|.+.+. .|.. .+|+||-...+++||+|+|+.+-||+++ +-.+....+|.+||+.|..++
T Consensus 498 L~iSi~HvDGtmNal~R~~l~~l~~~~~~-neckIlSNaRcLSEGVDVPaLDsViFf~-pr~smVDIVQaVGRVMRKa~g 575 (1518)
T COG4889 498 LKISIDHVDGTMNALERLDLLELKNTFEP-NECKILSNARCLSEGVDVPALDSVIFFD-PRSSMVDIVQAVGRVMRKAKG 575 (1518)
T ss_pred ceEEeecccccccHHHHHHHHhccCCCCc-chheeeccchhhhcCCCccccceEEEec-CchhHHHHHHHHHHHHHhCcC
Confidence 2456899999999966654 4454 4889888899999999999999999999 588899999999999999998
Q ss_pred CCCCceeEEEEEEecC
Q psy11640 425 AIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 425 k~~~~~~v~vy~lvs~ 440 (552)
|. ..+|.-.|.-
T Consensus 576 K~----yGYIILPIal 587 (1518)
T COG4889 576 KK----YGYIILPIAL 587 (1518)
T ss_pred Cc----cceEEEEecc
Confidence 75 5666655543
No 93
>PRK09401 reverse gyrase; Reviewed
Probab=99.86 E-value=8e-21 Score=221.24 Aligned_cols=295 Identities=16% Similarity=0.174 Sum_probs=172.0
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcc------c------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK------D------ 92 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~------~------ 92 (552)
+--++++|||+|||..++.++. ..+.++||||||++|+.||.+.|+.++......+..+.|... .
T Consensus 96 ~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l 175 (1176)
T PRK09401 96 ESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERL 175 (1176)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHH
Confidence 3446899999999976554332 335789999999999999999999988644445555544321 1
Q ss_pred CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCccccc-ccccccCCCCCcc--cccchhhhhhhhc
Q psy11640 93 KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK-KNVEKDDAAVPED--EFGAKDYRAQMVL 169 (552)
Q Consensus 93 ~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~-~~~~~~~~~~~~~--~f~~~d~~~~~~l 169 (552)
.....+|+|+|++.|.. +.+.+....++++|+||||+.... +++.. ... .|...+..
T Consensus 176 ~~~~~~IlV~Tp~rL~~----------~~~~l~~~~~~~lVvDEaD~~L~~~k~id~-----~l~~lGF~~~~i~----- 235 (1176)
T PRK09401 176 KEGDFDILVTTSQFLSK----------NFDELPKKKFDFVFVDDVDAVLKSSKNIDK-----LLYLLGFSEEDIE----- 235 (1176)
T ss_pred hcCCCCEEEECHHHHHH----------HHHhccccccCEEEEEChHHhhhcccchhh-----HHHhCCCCHHHHH-----
Confidence 01357999999998753 233454567999999999885431 11100 000 01000000
Q ss_pred CCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-----ccceeeecce
Q psy11640 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-----SHCKLGLTAT 244 (552)
Q Consensus 170 ~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-----~~~~lgLTAT 244 (552)
...+.+ .... . ..-.....+.+...+. ....+.+|||
T Consensus 236 ---------------------------~i~~~i-------~~~~---~-~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT 277 (1176)
T PRK09401 236 ---------------------------KAMELI-------RLKR---K-YEEIYEKIRELEEKIAELKDKKGVLVVSSAT 277 (1176)
T ss_pred ---------------------------HHHHhc-------cccc---c-cchhhhHHHHHHHhhhhcccCCceEEEEeCC
Confidence 000000 0000 0 0000011111111111 3457888999
Q ss_pred ecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHH
Q psy11640 245 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIA 324 (552)
Q Consensus 245 p~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~ 324 (552)
..........+..+++ ++..-. ...+... ...+ ...+.|...+..++.
T Consensus 278 ~~~~~~~~~l~~~ll~---~~v~~~----~~~~rnI--~~~y-----------------------i~~~~k~~~L~~ll~ 325 (1176)
T PRK09401 278 GRPRGNRVKLFRELLG---FEVGSP----VFYLRNI--VDSY-----------------------IVDEDSVEKLVELVK 325 (1176)
T ss_pred CCccchHHHHhhccce---EEecCc----ccccCCc--eEEE-----------------------EEcccHHHHHHHHHH
Confidence 7532111111111111 110000 0000000 0000 011145566667776
Q ss_pred HHhhcCCeEEEEeccHHH---HHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEE----eCccccccCC
Q psy11640 325 YHERRGDKTIVFSDNVFA---LKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFV----SKVADTSFDL 392 (552)
Q Consensus 325 ~~~~~g~kvIVF~~~~~~---~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~----T~v~~~GlDl 392 (552)
.. +..+||||++... ++.++..| .+..+||++ .+.+++|++ |+++|||+ |+++++|||+
T Consensus 326 ~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDi 396 (1176)
T PRK09401 326 RL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDL 396 (1176)
T ss_pred hc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCC
Confidence 54 4689999998666 99998888 356799999 234699995 89999999 5899999999
Q ss_pred CC-CCEEEEeccCCC------ChhhHHHHhhhccccC
Q psy11640 393 PE-ANVLIQISSHGG------SRRQEAQRLGRILRAK 422 (552)
Q Consensus 393 p~-a~~VI~~~~~~~------s~~q~~Qr~GRi~R~~ 422 (552)
|+ ++.||+++ .|. ....+.+|+||++...
T Consensus 397 P~~IryVI~y~-vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 397 PERIRYAIFYG-VPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CcceeEEEEeC-CCCEEEeccccccCHHHHHHHHhhc
Confidence 99 89999999 566 4567899999997544
No 94
>KOG0334|consensus
Probab=99.85 E-value=8.9e-21 Score=208.71 Aligned_cols=292 Identities=18% Similarity=0.211 Sum_probs=190.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhc----------CC-cEEEEecCchhHHHHHHHHHhhhCCCCCcE-EEEecCcccC--
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV----------RK-RALVLCNSGVSVEQWKHQFKLWSTADDSMI-CRFTSEAKDK-- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~----------~~-~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I-~~~~g~~~~~-- 93 (552)
+-.++++-||+|||+.++.++.+. .+ -+||||||++|+.|..+++.+|+.....++ ++++|.....
T Consensus 403 rdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qi 482 (997)
T KOG0334|consen 403 RDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQI 482 (997)
T ss_pred cceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHH
Confidence 346899999999999997765421 23 389999999999999999999886544444 4555544322
Q ss_pred ---CCCCcEEEEccccccc-ccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhc
Q psy11640 94 ---PMGCGILVTTYSMISH-TQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 169 (552)
Q Consensus 94 ---~~~~~IvItTy~~l~~-~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l 169 (552)
..+..|+|+|++.+.. ....+. -+..| ....++|+|||.+.- . +++
T Consensus 483 aelkRg~eIvV~tpGRmiD~l~~n~g----rvtnl--rR~t~lv~deaDrmf-d-----------------------mgf 532 (997)
T KOG0334|consen 483 AELKRGAEIVVCTPGRMIDILCANSG----RVTNL--RRVTYLVLDEADRMF-D-----------------------MGF 532 (997)
T ss_pred HHHhcCCceEEeccchhhhhHhhcCC----ccccc--cccceeeechhhhhh-e-----------------------ecc
Confidence 1458999999884421 100000 01112 456689999875421 0 000
Q ss_pred CCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceeccc
Q psy11640 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLRE 248 (552)
Q Consensus 170 ~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~ 248 (552)
|-++ ++ ++..+. .......|||..|.
T Consensus 533 -----------------------------------------------ePq~-----~~-Ii~nlrpdrQtvlfSatfpr~ 559 (997)
T KOG0334|consen 533 -----------------------------------------------EPQI-----TR-ILQNLRPDRQTVLFSATFPRS 559 (997)
T ss_pred -----------------------------------------------Cccc-----ch-HHhhcchhhhhhhhhhhhhHH
Confidence 0000 01 333333 22344566775442
Q ss_pred ccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhc-CchhHHHHHHHHHHHh
Q psy11640 249 DDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVM-NPNKYRATQYLIAYHE 327 (552)
Q Consensus 249 d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~-~~~K~~~l~~Ll~~~~ 327 (552)
+..+--+.++ .|+. +.|.... ..+....+.+..+. .+.|+..|.+||....
T Consensus 560 ------m~~la~~vl~-------------~Pve---iiv~~~s------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~ 611 (997)
T KOG0334|consen 560 ------MEALARKVLK-------------KPVE---IIVGGRS------VVCKEVTQVVRVCAIENEKFLKLLELLGERY 611 (997)
T ss_pred ------HHHHHHHhhc-------------CCee---EEEccce------eEeccceEEEEEecCchHHHHHHHHHHHHHh
Confidence 1110001110 1211 1111000 00001111112222 5678888888887664
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEec
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQIS 402 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~ 402 (552)
...++||||++...++.+.+.| ++..+||+.++.+|..++..|++ +.+++||+|+++.+|||+....+||+|+
T Consensus 612 -e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~-~~~~LLvaTsvvarGLdv~~l~Lvvnyd 689 (997)
T KOG0334|consen 612 -EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN-GVVNLLVATSVVARGLDVKELILVVNYD 689 (997)
T ss_pred -hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc-cCceEEEehhhhhcccccccceEEEEcc
Confidence 4779999999999999999988 34459999999999999999995 8999999999999999999999999999
Q ss_pred cCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 403 SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 403 ~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
. +.....|++|.||++|.|+. ...|.|++.
T Consensus 690 ~-pnh~edyvhR~gRTgragrk-------g~AvtFi~p 719 (997)
T KOG0334|consen 690 F-PNHYEDYVHRVGRTGRAGRK-------GAAVTFITP 719 (997)
T ss_pred c-chhHHHHHHHhcccccCCcc-------ceeEEEeCh
Confidence 5 77788899999999999984 346777777
No 95
>KOG0346|consensus
Probab=99.85 E-value=7.8e-21 Score=190.72 Aligned_cols=289 Identities=14% Similarity=0.170 Sum_probs=186.2
Q ss_pred CeecCCCCchhHHHHHHHHh------------cCCcEEEEecCchhHHHHHHHHHhhhCC--CCCcEEEEecCcccC---
Q psy11640 31 KKKKRPSAGKSLVGVTACCT------------VRKRALVLCNSGVSVEQWKHQFKLWSTA--DDSMICRFTSEAKDK--- 93 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~--~~~~I~~~~g~~~~~--- 93 (552)
++-+.||+|||.+.+..+.. .+..++|||||++|+.|.+..+.+.... ...++.-+.++..+.
T Consensus 60 varArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~ 139 (569)
T KOG0346|consen 60 VARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS 139 (569)
T ss_pred eeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 34589999999998776531 2346999999999999999998865432 112222233222221
Q ss_pred ---CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcC
Q psy11640 94 ---PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170 (552)
Q Consensus 94 ---~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~ 170 (552)
.+.++|+|+|+..+.... .......+ ....++|+|||.-. --||..
T Consensus 140 ~~L~d~pdIvV~TP~~ll~~~-----~~~~~~~~--~~l~~LVvDEADLl---------------lsfGYe--------- 188 (569)
T KOG0346|consen 140 VALMDLPDIVVATPAKLLRHL-----AAGVLEYL--DSLSFLVVDEADLL---------------LSFGYE--------- 188 (569)
T ss_pred HHHccCCCeEEeChHHHHHHH-----hhccchhh--hheeeEEechhhhh---------------hhcccH---------
Confidence 156899999999664210 00111222 56889999975210 012211
Q ss_pred CCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhc-cceeeecceecccc
Q psy11640 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS-HCKLGLTATLLRED 249 (552)
Q Consensus 171 ~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~-~~~lgLTATp~r~d 249 (552)
.-+.++...++. ...+.+|||.-
T Consensus 189 -----------------------------------------------------edlk~l~~~LPr~~Q~~LmSATl~--- 212 (569)
T KOG0346|consen 189 -----------------------------------------------------EDLKKLRSHLPRIYQCFLMSATLS--- 212 (569)
T ss_pred -----------------------------------------------------HHHHHHHHhCCchhhheeehhhhh---
Confidence 112334555542 34578899974
Q ss_pred cchhhhhhh--hcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHh
Q psy11640 250 DKIADLNFL--IGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE 327 (552)
Q Consensus 250 ~~~~~L~~l--ig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~ 327 (552)
+....|..+ -+|.+...+-.++...+-+.. +...|....|+-++..|++...
T Consensus 213 dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Q--------------------------y~v~cse~DKflllyallKL~L 266 (569)
T KOG0346|consen 213 DDVQALKKLFLHNPVILKLTEGELPNPDQLTQ--------------------------YQVKCSEEDKFLLLYALLKLRL 266 (569)
T ss_pred hHHHHHHHHhccCCeEEEeccccCCCcccceE--------------------------EEEEeccchhHHHHHHHHHHHH
Confidence 222333322 234332222212211111111 1222334567777766776433
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc---CC--ceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC------------------
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM---NK--PYIYGPTSQSERIQILQNFKLNPKVNTIFVSK------------------ 384 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L---~~--~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~------------------ 384 (552)
-.+|+|||+++++....|.-+| |+ ..+.|.+|..-|.-++++|+. |-++++|||+
T Consensus 267 -I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~~~~~eee~kgk~~e 344 (569)
T KOG0346|consen 267 -IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIATDDSADGDKLEEEVKGKSDE 344 (569)
T ss_pred -hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEEccCccchhhhhccccccccc
Confidence 2458999999999888776665 54 579999999999999999996 8999999998
Q ss_pred --------c---------cccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 385 --------V---------ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 385 --------v---------~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
. ..+|||+..+++|+++| .|.+...|+||+||.+|.+.. ..+.+||++..
T Consensus 345 ~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD-~P~t~~sYIHRvGRTaRg~n~-------GtalSfv~P~e 411 (569)
T KOG0346|consen 345 KNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFD-FPETVTSYIHRVGRTARGNNK-------GTALSFVSPKE 411 (569)
T ss_pred cCCCCccccccccCchhchhccccchheeeeeecC-CCCchHHHHHhccccccCCCC-------CceEEEecchH
Confidence 1 25799999999999999 599999999999999998774 45788888753
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.84 E-value=2.3e-19 Score=200.67 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=73.5
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~ 94 (552)
+..++.+|||+|||.+++.++. ..++++|||+|+.+|+.||.+.|+++++ ..+.+++|+.... .
T Consensus 163 ~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg---~~v~~~~s~~s~~~r~~~~~~~~~ 239 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFG---APVAVLHSGLSDGERLDEWRKAKR 239 (679)
T ss_pred CcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhC---CCEEEEECCCCHHHHHHHHHHHHc
Confidence 4578889999999999887664 3467899999999999999999998775 3678888764321 1
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
...+|+|+|++.+. +.-.++++||+||+|.
T Consensus 240 g~~~IVVgTrsal~---------------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 240 GEAKVVIGARSALF---------------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred CCCCEEEeccHHhc---------------ccccCCCEEEEECCCc
Confidence 34789999987552 1126899999999875
No 97
>KOG1001|consensus
Probab=99.84 E-value=1.4e-20 Score=206.29 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=105.7
Q ss_pred eEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-CccccccCCCCCCEEEEeccCC
Q psy11640 332 KTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLIQISSHG 405 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~~GlDlp~a~~VI~~~~~~ 405 (552)
++|||++.+..++.+...| ....++|.++...|.+.+..|..++.+++++.+ ++|+.|+|+..|++|+..| ++
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d-~~ 619 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMD-PW 619 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhc-hh
Confidence 9999999999999988877 345689999999999999999987888888876 9999999999999999999 79
Q ss_pred CChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHH
Q psy11640 406 GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453 (552)
Q Consensus 406 ~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~ 453 (552)
|||..+.|++.|++|.||.+ +|+|++++..+|+|+++.+..++
T Consensus 620 wnp~~eeQaidR~hrigq~k-----~v~v~r~~i~dtveer~l~iq~~ 662 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTK-----PVKVSRFIIKDTVEERILKIQEK 662 (674)
T ss_pred cChHHHHHHHHHHHHhcccc-----eeeeeeehhhhccHHHHHHHHHH
Confidence 99999999999999999977 69999999999999999875443
No 98
>KOG0952|consensus
Probab=99.83 E-value=1.1e-19 Score=198.58 Aligned_cols=302 Identities=15% Similarity=0.153 Sum_probs=179.9
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc-------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV-------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD 92 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~-------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~ 92 (552)
..--+++++|||+|||.+|...|.+. .-+++.|+|+++|+....+.|.+-+..-...|..++|+..-
T Consensus 125 SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql 204 (1230)
T KOG0952|consen 125 SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL 204 (1230)
T ss_pred CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh
Confidence 45568999999999999998877532 23799999999999887777775554334688899998742
Q ss_pred ---CCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhc
Q psy11640 93 ---KPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 169 (552)
Q Consensus 93 ---~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l 169 (552)
....++|+|||++..-....++.. ...++ ..+.|+|+||.|-...
T Consensus 205 ~~tei~~tqiiVTTPEKwDvvTRk~~~---d~~l~--~~V~LviIDEVHlLhd--------------------------- 252 (1230)
T KOG0952|consen 205 TKTEIADTQIIVTTPEKWDVVTRKSVG---DSALF--SLVRLVIIDEVHLLHD--------------------------- 252 (1230)
T ss_pred hHHHHHhcCEEEecccceeeeeeeecc---chhhh--hheeeEEeeeehhhcC---------------------------
Confidence 235689999999966432222211 12333 5789999998765211
Q ss_pred CCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccc
Q psy11640 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRED 249 (552)
Q Consensus 170 ~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d 249 (552)
. .| |+. |. +-+.+.+.+-.....-+.+|||||...
T Consensus 253 -----~-------RG--------pvl---------------------Et--iVaRtlr~vessqs~IRivgLSATlPN-- 287 (1230)
T KOG0952|consen 253 -----D-------RG--------PVL---------------------ET--IVARTLRLVESSQSMIRIVGLSATLPN-- 287 (1230)
T ss_pred -----c-------cc--------chH---------------------HH--HHHHHHHHHHhhhhheEEEEeeccCCC--
Confidence 0 00 000 11 112222222233334567899999743
Q ss_pred cchhhhhhhhcccccccCHHHHHHcCCCc-ceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhh
Q psy11640 250 DKIADLNFLIGPKLYEANWLELQKRGFIA-RVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHER 328 (552)
Q Consensus 250 ~~~~~L~~lig~~~~~~~~~el~~~g~l~-~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~ 328 (552)
..++-.+++-..|.. ..-. ..+|.+ |+....+-++.. ..+.....+..... +.+++.+ .
T Consensus 288 --~eDvA~fL~vn~~~g-lfsF-d~~yRPvpL~~~~iG~k~~------------~~~~~~~~~d~~~~---~kv~e~~-~ 347 (1230)
T KOG0952|consen 288 --YEDVARFLRVNPYAG-LFSF-DQRYRPVPLTQGFIGIKGK------------KNRQQKKNIDEVCY---DKVVEFL-Q 347 (1230)
T ss_pred --HHHHHHHhcCCCccc-eeee-cccccccceeeeEEeeecc------------cchhhhhhHHHHHH---HHHHHHH-H
Confidence 334433332211100 0000 011111 000000000000 00111111112222 2333433 5
Q ss_pred cCCeEEEEeccHHHHHHHHHHc----------------------------CCceEeCCCCHHHHHHHHHhhccCCCeeEE
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM----------------------------NKPYIYGPTSQSERIQILQNFKLNPKVNTI 380 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L----------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~~vL 380 (552)
.|..++||++++...-..++.| |....|.++...+|+-+-+.|+. |.++||
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~-G~i~vL 426 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE-GHIKVL 426 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc-CCceEE
Confidence 8999999999877666555555 24567889999999999999995 999999
Q ss_pred EEeCccccccCCCCCCEEEE-----eccCCC-----ChhhHHHHhhhccccCCCCC
Q psy11640 381 FVSKVADTSFDLPEANVLIQ-----ISSHGG-----SRRQEAQRLGRILRAKKGAI 426 (552)
Q Consensus 381 v~T~v~~~GlDlp~a~~VI~-----~~~~~~-----s~~q~~Qr~GRi~R~~~~k~ 426 (552)
++|..++.|+||| |.+||+ |++--+ .--..+|..|||||+.-++.
T Consensus 427 ~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 427 CCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred EecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 9999999999999 566666 332111 12246899999999987664
No 99
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=204.68 Aligned_cols=320 Identities=17% Similarity=0.186 Sum_probs=219.8
Q ss_pred hccCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCC--CcEEEEecCcccC------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADD--SMICRFTSEAKDK------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~--~~I~~~~g~~~~~------~ 94 (552)
+--+++-|||||||+.++.+|.. ...++|+|-|+++|++.+.++|.+|....+ ..+..|+|+.... .
T Consensus 86 ~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~ 165 (851)
T COG1205 86 RNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR 165 (851)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHh
Confidence 56678899999999999988753 245789999999999999999999885433 5778899987542 2
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
..++|++|||+||.....+... ...++. .++.+||+||+|.=.. .||.
T Consensus 166 ~pp~IllTNpdMLh~~llr~~~---~~~~~~-~~Lk~lVvDElHtYrG--------------v~GS-------------- 213 (851)
T COG1205 166 NPPDILLTNPDMLHYLLLRNHD---AWLWLL-RNLKYLVVDELHTYRG--------------VQGS-------------- 213 (851)
T ss_pred CCCCEEEeCHHHHHHHhccCcc---hHHHHH-hcCcEEEEecceeccc--------------cchh--------------
Confidence 5689999999999764333321 122232 5699999998875211 1110
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh----ccceeeecceeccccc
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ----SHCKLGLTATLLREDD 250 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~----~~~~lgLTATp~r~d~ 250 (552)
+ -+-..|++...+. ....+..|||.-....
T Consensus 214 ------------------------------------------~----vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e 247 (851)
T COG1205 214 ------------------------------------------E----VALLLRRLLRRLRRYGSPLQIICTSATLANPGE 247 (851)
T ss_pred ------------------------------------------H----HHHHHHHHHHHHhccCCCceEEEEeccccChHH
Confidence 1 1233444554444 5667899999753322
Q ss_pred chhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcC
Q psy11640 251 KIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRG 330 (552)
Q Consensus 251 ~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g 330 (552)
...+++... ++.+ ....|.-.......++.|.......- ...++...+..++......+
T Consensus 248 ~~~~l~~~~----f~~~---v~~~g~~~~~~~~~~~~p~~~~~~~~--------------~r~s~~~~~~~~~~~~~~~~ 306 (851)
T COG1205 248 FAEELFGRD----FEVP---VDEDGSPRGLRYFVRREPPIRELAES--------------IRRSALAELATLAALLVRNG 306 (851)
T ss_pred HHHHhcCCc----ceee---ccCCCCCCCceEEEEeCCcchhhhhh--------------cccchHHHHHHHHHHHHHcC
Confidence 222322111 1111 22234434444444555433211000 12345566667777777789
Q ss_pred CeEEEEeccHHHHHHHHHH----c---C------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCE
Q psy11640 331 DKTIVFSDNVFALKHYAVK----M---N------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANV 397 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~----L---~------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~ 397 (552)
-++|+|+.++..++.+... + + +...+|++...+|.++...|+. |++.++++|.++..|+|+-+++.
T Consensus 307 ~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~~~st~AlelgidiG~lda 385 (851)
T COG1205 307 IQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLGVIATNALELGIDIGSLDA 385 (851)
T ss_pred ceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccEEecchhhhhceeehhhhh
Confidence 9999999999999888521 1 2 4567899999999999999996 89999999999999999999999
Q ss_pred EEEeccCCC-ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHH
Q psy11640 398 LIQISSHGG-SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455 (552)
Q Consensus 398 VI~~~~~~~-s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l 455 (552)
||.... |. +...+.||.||+||.++. ..++.+...+.++.+|......++
T Consensus 386 vi~~g~-P~~s~~~~~Q~~GRaGR~~~~-------~l~~~v~~~~~~d~yy~~~p~~~~ 436 (851)
T COG1205 386 VIAYGY-PGVSVLSFRQRAGRAGRRGQE-------SLVLVVLRSDPLDSYYLRHPEELL 436 (851)
T ss_pred HhhcCC-CCchHHHHHHhhhhccCCCCC-------ceEEEEeCCCccchhhhhCcHhhh
Confidence 999985 77 889999999999998853 445555556677777776555444
No 100
>KOG0327|consensus
Probab=99.82 E-value=9.3e-20 Score=181.16 Aligned_cols=287 Identities=14% Similarity=0.170 Sum_probs=190.1
Q ss_pred cCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-------CCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-------PMG 96 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-------~~~ 96 (552)
-.+-+++|+|||.+....+... ...+|+++|+++|+.|.......+.......+....|...-. ...
T Consensus 66 v~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~ 145 (397)
T KOG0327|consen 66 VIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDK 145 (397)
T ss_pred eeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccC
Confidence 4566899999999976665432 346999999999999999888887765555666555543211 234
Q ss_pred CcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCC
Q psy11640 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 176 (552)
Q Consensus 97 ~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r 176 (552)
+.|+++|+..+....++ ..|......+.++||+.... ...|
T Consensus 146 ~hivvGTpgrV~dml~~--------~~l~~~~iKmfvlDEaDEmL-------------s~gf------------------ 186 (397)
T KOG0327|consen 146 PHIVVGTPGRVFDMLNR--------GSLSTDGIKMFVLDEADEML-------------SRGF------------------ 186 (397)
T ss_pred ceeecCCchhHHHhhcc--------ccccccceeEEeecchHhhh-------------ccch------------------
Confidence 78999999755322111 12344668899999752210 0000
Q ss_pred CccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhh
Q psy11640 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 177 ~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L 255 (552)
...+..+...++ .-..+.+|||.... -....-
T Consensus 187 ----------------------------------------------kdqI~~if~~lp~~vQv~l~SAT~p~~-vl~vt~ 219 (397)
T KOG0327|consen 187 ----------------------------------------------KDQIYDIFQELPSDVQVVLLSATMPSD-VLEVTK 219 (397)
T ss_pred ----------------------------------------------HHHHHHHHHHcCcchhheeecccCcHH-HHHHHH
Confidence 111222334443 23567789996321 000000
Q ss_pred hhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 256 NFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 256 ~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
.+.--|........+ ++.+..++ ....+..++|+..|..+.+ .-...+|
T Consensus 220 ~f~~~pv~i~vkk~~------------------ltl~gikq---------~~i~v~k~~k~~~l~dl~~----~~~q~~i 268 (397)
T KOG0327|consen 220 KFMREPVRILVKKDE------------------LTLEGIKQ---------FYINVEKEEKLDTLCDLYR----RVTQAVI 268 (397)
T ss_pred HhccCceEEEecchh------------------hhhhheee---------eeeeccccccccHHHHHHH----hhhcceE
Confidence 011111111111111 11111111 1111222347777777666 4467899
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhh
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 410 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q 410 (552)
||++...++.+...| .+..+||.+.+.+|..++..|+. |..+|||.|+.+++|+|+..++.||+|+ .|.+...
T Consensus 269 f~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrvlIttdl~argidv~~~slvinyd-lP~~~~~ 346 (397)
T KOG0327|consen 269 FCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRVLITTDLLARGIDVQQVSLVVNYD-LPARKEN 346 (397)
T ss_pred EecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceEEeeccccccccchhhcceeeeec-cccchhh
Confidence 999999999999998 35789999999999999999996 8999999999999999999999999999 6999999
Q ss_pred HHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 411 EAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 411 ~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
|++|+||+||.|.. ....++++..+
T Consensus 347 yihR~gr~gr~grk-------g~~in~v~~~d 371 (397)
T KOG0327|consen 347 YIHRIGRAGRFGRK-------GVAINFVTEED 371 (397)
T ss_pred hhhhcccccccCCC-------ceeeeeehHhh
Confidence 99999999999883 55778887754
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.2e-18 Score=193.26 Aligned_cols=374 Identities=14% Similarity=0.141 Sum_probs=203.9
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----CCCCcEEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----PMGCGILV 101 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~IvI 101 (552)
..++.|+||+|||+++..++. ..+..++||+||..|+.|-.+++..+...-...++++.|+.... ...++|++
T Consensus 97 G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y~~dIvy 176 (896)
T PRK13104 97 GNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAYKADIVY 176 (896)
T ss_pred CccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHhCCCEEE
Confidence 457889999999999887665 34568999999999999988888877765556788887765321 13589999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccc----cccccCCCCCcccccch-hhhhhhh--------
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKK----NVEKDDAAVPEDEFGAK-DYRAQMV-------- 168 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~----~~~~~~~~~~~~~f~~~-d~~~~~~-------- 168 (552)
+|++.|....-+..-....-+.+ ...+.++|+||++...-.. .+.+.........|... .+...+.
T Consensus 177 gT~grlgfDyLrd~~~~~~~~~v-~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~ 255 (896)
T PRK13104 177 GTNNEYGFDYLRDNMAFSLTDKV-QRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDE 255 (896)
T ss_pred ECChhhhHHHHhcCCccchHhhh-ccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCC
Confidence 99998732111110000000111 2578899999987754322 22322222222333211 1111111
Q ss_pred --cCCCCCCCCccccCCCccccccccchhhhhhHHHHH---hh--cCCCCCccccceeecchhHHHHHHHhhhccceeee
Q psy11640 169 --LKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIA---IA--EPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGL 241 (552)
Q Consensus 169 --l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~---~~--~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgL 241 (552)
..-++..+.+|+.+.|...++.+ +.. ++ +.+..+ . .......+...+.+++.+--
T Consensus 256 ~dy~idek~~~v~Lte~G~~~~e~~----------~~~~~il~~~~~l~~~-----~---~~~~~~~i~~aL~A~~lf~~ 317 (896)
T PRK13104 256 GDYTIDEKQKQAHLTDAGHLHIEEL----------LTKAKLLDPGESLYHA-----S---NIMLMHHVNAALKAHAMFHR 317 (896)
T ss_pred CCEEEEcCCCceEEchHHHHHHHHH----------HHhCCccCCcccccCc-----h---hhhHHHHHHHHHHHHHHhcC
Confidence 11134556677777664332221 100 00 000000 0 01111222222333322111
Q ss_pred cceecccccchhhhhhhhcccccccCHH----HHHHc--CCC-cceEE--EE-----------EEcCCCH-------HHH
Q psy11640 242 TATLLREDDKIADLNFLIGPKLYEANWL----ELQKR--GFI-ARVQC--AE-----------VWCPMSP-------EFY 294 (552)
Q Consensus 242 TATp~r~d~~~~~L~~lig~~~~~~~~~----el~~~--g~l-~~~~~--~~-----------v~~~l~~-------~~~ 294 (552)
---.+-.|+.+..+....|..+....|. ++++. |.- .+-.. .. ....||. ++.
T Consensus 318 d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~ 397 (896)
T PRK13104 318 DIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQ 397 (896)
T ss_pred CCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHH
Confidence 1111111333333333444444333333 22221 111 11000 00 0111211 111
Q ss_pred HHHHh----hhhhh-------hhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCC
Q psy11640 295 REYLV----CKTSK-------RLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGP 358 (552)
Q Consensus 295 ~~y~~----~~~~~-------~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~ 358 (552)
.-|.- .++.+ ....+.....|+.++.+-+......|..+||||.++...+.|+..| + ...++|.
T Consensus 398 ~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak 477 (896)
T PRK13104 398 QIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAK 477 (896)
T ss_pred HHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCC
Confidence 11110 00000 0112223346888765555555568999999999999999999999 4 4569999
Q ss_pred CCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCC--------------------------------------CEEEE
Q psy11640 359 TSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA--------------------------------------NVLIQ 400 (552)
Q Consensus 359 ~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a--------------------------------------~~VI~ 400 (552)
..+.||..+.+.|+. | .|+|||+++|+|+||.=- =+||-
T Consensus 478 ~~q~Ea~iia~Ag~~-G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIg 554 (896)
T PRK13104 478 FHEKEAQIIAEAGRP-G--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIG 554 (896)
T ss_pred CChHHHHHHHhCCCC-C--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEe
Confidence 999999999999995 6 599999999999999732 14444
Q ss_pred eccCCCChhhHHHHhhhccccCCCC
Q psy11640 401 ISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 401 ~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
-. ..-|++-..|-.||+||-|..+
T Consensus 555 Te-rhesrRID~QLrGRaGRQGDPG 578 (896)
T PRK13104 555 SE-RHESRRIDNQLRGRAGRQGDPG 578 (896)
T ss_pred ec-cCchHHHHHHhccccccCCCCC
Confidence 44 4778999999999999977643
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=9.6e-19 Score=193.12 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=93.9
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+.++...+......+.++||||.++...+.|+..| + ...++|++...|+..+...++. | .|+|||+++
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~-g--~VtIATnmA 498 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR-G--AVTIATNMA 498 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC-c--eEEEEeccc
Confidence 345888777766554468999999999999999999998 3 4578999998888888888885 4 499999999
Q ss_pred ccccCCC---CCC-----EEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 387 DTSFDLP---EAN-----VLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 387 ~~GlDlp---~a~-----~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
|+|+||+ .+. +||.++ .+.|++.+.|++||+||.|..+
T Consensus 499 GRGtDI~l~~~V~~~GGLhVI~te-~pes~ri~~Ql~GRtGRqG~~G 544 (796)
T PRK12906 499 GRGTDIKLGPGVKELGGLAVIGTE-RHESRRIDNQLRGRSGRQGDPG 544 (796)
T ss_pred cCCCCCCCCcchhhhCCcEEEeee-cCCcHHHHHHHhhhhccCCCCc
Confidence 9999995 788 999999 6999999999999999988744
No 103
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.79 E-value=4.6e-18 Score=198.50 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCeEEEEeccH---HHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe----Cc
Q psy11640 318 ATQYLIAYHERRGDKTIVFSDNV---FALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS----KV 385 (552)
Q Consensus 318 ~l~~Ll~~~~~~g~kvIVF~~~~---~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T----~v 385 (552)
.+.++++.. +.++||||++. ..++.|+..| ++..+||+++ +.++++|++ |+++|||+| ++
T Consensus 317 ~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv 388 (1171)
T TIGR01054 317 TLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAE-GEIDVLIGVASYYGT 388 (1171)
T ss_pred HHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHc-CCCCEEEEeccccCc
Confidence 445566543 56899999998 9999999988 3467999997 378999995 899999994 89
Q ss_pred cccccCCCC-CCEEEEeccCCC
Q psy11640 386 ADTSFDLPE-ANVLIQISSHGG 406 (552)
Q Consensus 386 ~~~GlDlp~-a~~VI~~~~~~~ 406 (552)
+++|||+|+ +++||+++ .|.
T Consensus 389 ~aRGIDip~~V~~vI~~~-~P~ 409 (1171)
T TIGR01054 389 LVRGLDLPERVRYAVFLG-VPK 409 (1171)
T ss_pred ccccCCCCccccEEEEEC-CCC
Confidence 999999999 89999988 453
No 104
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.78 E-value=8e-18 Score=194.01 Aligned_cols=103 Identities=23% Similarity=0.317 Sum_probs=85.0
Q ss_pred cCCeEEEEeccHHHHHHHHHHc---C-----CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM---N-----KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L---~-----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
..+.+|||+++...++.++..| + +..+||++++.+|..+++. .|..+|||+|+++++|||||++++||.
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeEEEeccHHhhccccCcceEEEE
Confidence 4578999999999999999888 2 2358999999999998875 367899999999999999999999998
Q ss_pred ecc--------------C---CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 401 ISS--------------H---GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 401 ~~~--------------~---~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
++. . +.|..++.||.||+||.++| .+|+|.+.+.
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G--------~c~rLyte~d 412 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEG--------ICIRLYSEDD 412 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCc--------EEEEeCCHHH
Confidence 530 1 23557899999999999664 4688887643
No 105
>PRK14701 reverse gyrase; Provisional
Probab=99.77 E-value=5.8e-18 Score=201.51 Aligned_cols=302 Identities=14% Similarity=0.169 Sum_probs=167.4
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCC--CCcEEEEecCcccC---------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTAD--DSMICRFTSEAKDK--------- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~--~~~I~~~~g~~~~~--------- 93 (552)
+--+++||||+|||+.++.++. ..+.++|||+||++|+.|+.+.|+.++... ...+..++|+....
T Consensus 95 ~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l 174 (1638)
T PRK14701 95 KSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERI 174 (1638)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHH
Confidence 3457899999999985443332 235689999999999999999999876421 23456666664211
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccc-cccccccCCCCCcccccchhhhhhhhcCC
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAA-KKNVEKDDAAVPEDEFGAKDYRAQMVLKP 171 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~-~~~~~~~~~~~~~~~f~~~d~~~~~~l~~ 171 (552)
....+|+|+|++.|... +..+....++++|+||||.... ++++..- ....|
T Consensus 175 ~~g~~dILV~TPgrL~~~----------~~~l~~~~i~~iVVDEAD~ml~~~knid~~-----L~llG------------ 227 (1638)
T PRK14701 175 ENGDFDILVTTAQFLARN----------FPEMKHLKFDFIFVDDVDAFLKASKNIDRS-----LQLLG------------ 227 (1638)
T ss_pred hcCCCCEEEECCchhHHh----------HHHHhhCCCCEEEEECceeccccccccchh-----hhcCC------------
Confidence 12479999999977431 1112236799999999998543 2222111 11000
Q ss_pred CCCCCCccccCCCccccccccchhh-hhhHHHHHhhcCCCCC-ccccceeecchhHHHHHHHhhhc-c-ceeeecceecc
Q psy11640 172 DHKSRPLWVAPNGHIFLESFSPVYR-HAHDFLIAIAEPVCRP-EHIHEVHTIPAKMFRRVLTIVQS-H-CKLGLTATLLR 247 (552)
Q Consensus 172 ~~~~r~~~~~~~g~i~~~~~~~~~~-~~~d~~~~~~~~~~r~-~~~~E~~~~~~~~~~~~l~~~~~-~-~~lgLTATp~r 247 (552)
|.+-+. .+.+.+.. .+.... ....+ ....+..+..++. + ..+..|||...
T Consensus 228 -------------------F~~e~~~~~~~il~~--~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~ll~~SAT~~~ 281 (1638)
T PRK14701 228 -------------------FYEEIIEKAWKIIYL--KKQGNIEDAMEK-----REILNKEIEKIGNKIGCLIVASATGKA 281 (1638)
T ss_pred -------------------ChHHHHHHHHHhhhc--ccccccchhhhh-----hhhhhhhhhhcCCCccEEEEEecCCCc
Confidence 001110 00000000 000000 00000 0001111112222 2 24567999753
Q ss_pred cccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHh
Q psy11640 248 EDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE 327 (552)
Q Consensus 248 ~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~ 327 (552)
.......+..++ .+..... ...+... ...++. ...+.| ..+..+++.+
T Consensus 282 r~~~~~l~~~~l---~f~v~~~----~~~lr~i--~~~yi~---------------------~~~~~k-~~L~~ll~~~- 329 (1638)
T PRK14701 282 KGDRVKLYRELL---GFEVGSG----RSALRNI--VDVYLN---------------------PEKIIK-EHVRELLKKL- 329 (1638)
T ss_pred hhHHHHHhhcCe---EEEecCC----CCCCCCc--EEEEEE---------------------CCHHHH-HHHHHHHHhC-
Confidence 211111111111 1111000 0000000 011110 011222 3444566543
Q ss_pred hcCCeEEEEeccHHH---HHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe----CccccccCCCC-
Q psy11640 328 RRGDKTIVFSDNVFA---LKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS----KVADTSFDLPE- 394 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~---~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T----~v~~~GlDlp~- 394 (552)
+..+||||++... ++.++..| ++..+||+ |...+++|++ |+++|||+| +++++|||+|+
T Consensus 330 --g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~~ 401 (1638)
T PRK14701 330 --GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPER 401 (1638)
T ss_pred --CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCCc
Confidence 5789999998664 57888887 34678884 9999999996 899999999 58999999999
Q ss_pred CCEEEEeccCCC---ChhhHHH-------------HhhhccccCC
Q psy11640 395 ANVLIQISSHGG---SRRQEAQ-------------RLGRILRAKK 423 (552)
Q Consensus 395 a~~VI~~~~~~~---s~~q~~Q-------------r~GRi~R~~~ 423 (552)
+..||+++ .|. |...|.| ++||++|.+.
T Consensus 402 Vryvi~~~-~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 402 IRFAVFYG-VPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred cCEEEEeC-CCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 99999999 577 5554444 4599998775
No 106
>PRK09694 helicase Cas3; Provisional
Probab=99.77 E-value=9.3e-18 Score=189.65 Aligned_cols=102 Identities=22% Similarity=0.265 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc--------CCceEeCCCCHHHH----HHHHHhhccCCC---eeEEE
Q psy11640 317 RATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM--------NKPYIYGPTSQSER----IQILQNFKLNPK---VNTIF 381 (552)
Q Consensus 317 ~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L--------~~~~i~G~~~~~eR----~~il~~F~~~g~---~~vLv 381 (552)
.++..+++.. ..|.++||||+++..+..+.+.| .+..+||.++..+| .++++.|..+++ ..|||
T Consensus 548 ~~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 548 TLLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 3445555543 46889999999999999988877 25679999999999 467889933454 47999
Q ss_pred EeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCC
Q psy11640 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 382 ~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
+|++++.||||+ +|++|.... | ...++||+||++|.+.
T Consensus 627 aTQViE~GLDId-~DvlItdla-P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDLD-FDWLITQLC-P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeecC-CCeEEECCC-C--HHHHHHHHhccCCCCC
Confidence 999999999995 798887543 3 5679999999999876
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.8e-17 Score=182.32 Aligned_cols=369 Identities=13% Similarity=0.098 Sum_probs=196.4
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----CCCCcEEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----PMGCGILV 101 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~IvI 101 (552)
.+++-|+||.|||+++..++. ..+..+-||+|+..|+.|-.+.+..++..-...++++.|+.... .-.++|++
T Consensus 96 G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~~dI~y 175 (830)
T PRK12904 96 GKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADITY 175 (830)
T ss_pred CchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcCCCeEE
Confidence 468889999999999877663 34667889999999999988888877755456788888765321 13589999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCccccccc----ccccCCCCCcccccch-hhhhhhh----cCCC
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKN----VEKDDAAVPEDEFGAK-DYRAQMV----LKPD 172 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~----~~~~~~~~~~~~f~~~-d~~~~~~----l~~~ 172 (552)
+|+..|....-+..... ..+.+....+.++|+||+....-... +.+.......+.|... .+...+. ..-+
T Consensus 176 gT~~elgfDyLrd~~~~-~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 254 (830)
T PRK12904 176 GTNNEFGFDYLRDNMVF-SLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVD 254 (830)
T ss_pred ECCcchhhhhhhccccc-chhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEE
Confidence 99998843211110000 01112236788899998765433221 1222111111222111 1111110 0012
Q ss_pred CCCCCccccCCCcccccccc---chhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccc
Q psy11640 173 HKSRPLWVAPNGHIFLESFS---PVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRED 249 (552)
Q Consensus 173 ~~~r~~~~~~~g~i~~~~~~---~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d 249 (552)
...+.+|+.+.|-..++.+. ++|... .......+...+.+++.+-----.+-.|
T Consensus 255 e~~~~v~lte~G~~~~e~~~~~~~ly~~~-----------------------~~~~~~~i~~AL~A~~l~~~d~dYiV~d 311 (830)
T PRK12904 255 EKSRTVGLTEEGIEKAEKLLGIENLYDPE-----------------------NIALVHHLNQALRAHELFKRDVDYIVKD 311 (830)
T ss_pred cCCCeeeECHHHHHHHHHHhCCccccChh-----------------------hhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 33444555554432222110 011000 0001111112222221110000000012
Q ss_pred cchhhhhhhhcccccccCHH----HHHH--cCCCcceEEEE--------------EEcCCCH-------HHHHHHHh---
Q psy11640 250 DKIADLNFLIGPKLYEANWL----ELQK--RGFIARVQCAE--------------VWCPMSP-------EFYREYLV--- 299 (552)
Q Consensus 250 ~~~~~L~~lig~~~~~~~~~----el~~--~g~l~~~~~~~--------------v~~~l~~-------~~~~~y~~--- 299 (552)
+.+..+....|..+-...|. ++++ .|.-....... -...||. ++..-|.-
T Consensus 312 g~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv 391 (830)
T PRK12904 312 GEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVV 391 (830)
T ss_pred CEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEE
Confidence 22222222333333333332 2221 12111100000 0111111 11111110
Q ss_pred -hhhhh-------hhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHH
Q psy11640 300 -CKTSK-------RLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQ 366 (552)
Q Consensus 300 -~~~~~-------~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~ 366 (552)
.++.+ ....+.....|+.++..++......|.++||||.++..++.|+..| + ...++|. +.+|..
T Consensus 392 ~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa 469 (830)
T PRK12904 392 VIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREA 469 (830)
T ss_pred EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHH
Confidence 00000 0112223346888887777664468899999999999999999999 3 3468885 789999
Q ss_pred HHHhhccCCCeeEEEEeCccccccCCCCC-------------------------------------C-EEEEeccCCCCh
Q psy11640 367 ILQNFKLNPKVNTIFVSKVADTSFDLPEA-------------------------------------N-VLIQISSHGGSR 408 (552)
Q Consensus 367 il~~F~~~g~~~vLv~T~v~~~GlDlp~a-------------------------------------~-~VI~~~~~~~s~ 408 (552)
.+..|.. +...|+|||+++|+|+||+=- - +||.-. .+-|.
T Consensus 470 ~Iia~Ag-~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe-rhesr 547 (830)
T PRK12904 470 EIIAQAG-RPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE-RHESR 547 (830)
T ss_pred HHHHhcC-CCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc-cCchH
Confidence 9999995 899999999999999999854 1 444444 57889
Q ss_pred hhHHHHhhhccccCCCC
Q psy11640 409 RQEAQRLGRILRAKKGA 425 (552)
Q Consensus 409 ~q~~Qr~GRi~R~~~~k 425 (552)
+-..|-.||+||-|..+
T Consensus 548 Rid~QlrGRagRQGdpG 564 (830)
T PRK12904 548 RIDNQLRGRSGRQGDPG 564 (830)
T ss_pred HHHHHhhcccccCCCCC
Confidence 99999999999977643
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.76 E-value=3.3e-17 Score=181.49 Aligned_cols=119 Identities=17% Similarity=0.242 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccc
Q psy11640 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTS 389 (552)
Q Consensus 315 K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~G 389 (552)
++..+..-+......+.++||||.++..++.|+..| .+..+||++++.+|.+++..|+. |++.|+|+|+++++|
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDVLVGINLLREG 505 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceEEEEcChhcCC
Confidence 455454444545567899999999999999999988 34678999999999999999995 899999999999999
Q ss_pred cCCCCCCEEEEecc----CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 390 FDLPEANVLIQISS----HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 390 lDlp~a~~VI~~~~----~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
+|+|++++||+++. .+.+...|+||+||++|...|+ ++.+++..|
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~--------vi~~~~~~~ 554 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK--------VIMYADKIT 554 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCE--------EEEEEcCCC
Confidence 99999999999872 2668899999999999985432 456666554
No 109
>KOG0951|consensus
Probab=99.76 E-value=1.9e-17 Score=183.36 Aligned_cols=300 Identities=18% Similarity=0.169 Sum_probs=178.8
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHh-c-------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCc
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCT-V-------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA 90 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~-~-------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~ 90 (552)
.++-..++++|||+|||.+|+.-+.. . ..+++.++|...|+..|...|.+++..-...|.-.+|+.
T Consensus 323 ~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~ 402 (1674)
T KOG0951|consen 323 RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDS 402 (1674)
T ss_pred cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccc
Confidence 34567899999999999999876642 1 126899999999999999999998865456778888885
Q ss_pred c---cCCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhh
Q psy11640 91 K---DKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQM 167 (552)
Q Consensus 91 ~---~~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~ 167 (552)
. .......|+|||++-.--....+. ...+. +.+.++|+||.|-.
T Consensus 403 ~l~~~qieeTqVIV~TPEK~DiITRk~g----draY~--qlvrLlIIDEIHLL--------------------------- 449 (1674)
T KOG0951|consen 403 QLGKEQIEETQVIVTTPEKWDIITRKSG----DRAYE--QLVRLLIIDEIHLL--------------------------- 449 (1674)
T ss_pred cchhhhhhcceeEEeccchhhhhhcccC----chhHH--HHHHHHhhhhhhhc---------------------------
Confidence 3 234678999999884411111111 01111 35788999976531
Q ss_pred hcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecc
Q psy11640 168 VLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLR 247 (552)
Q Consensus 168 ~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r 247 (552)
|.+| | |+. | .+-+.++++.-.........|||||+..
T Consensus 450 -----hDdR-------G--------pvL---------------------E--SIVaRt~r~ses~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 450 -----HDDR-------G--------PVL---------------------E--SIVARTFRRSESTEEGSRLVGLSATLPN 486 (1674)
T ss_pred -----cccc-------c--------hHH---------------------H--HHHHHHHHHhhhcccCceeeeecccCCc
Confidence 0000 0 000 0 0112233333233334567899999854
Q ss_pred cccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhh-hhHHhcCchhHHHHHHHHHHH
Q psy11640 248 EDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKR-LLLYVMNPNKYRATQYLIAYH 326 (552)
Q Consensus 248 ~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~-~~~~~~~~~K~~~l~~Ll~~~ 326 (552)
-++...-|.--. +-+|.. ...+ -.||+. ++|.....++. ....+||.. +.+.+++..
T Consensus 487 y~DV~~Fl~v~~-~glf~f------------d~sy--RpvPL~----qq~Igi~ek~~~~~~qamNe~---~yeKVm~~a 544 (1674)
T KOG0951|consen 487 YEDVASFLRVDP-EGLFYF------------DSSY--RPVPLK----QQYIGITEKKPLKRFQAMNEA---CYEKVLEHA 544 (1674)
T ss_pred hhhhHHHhccCc-cccccc------------Cccc--CcCCcc----ceEeccccCCchHHHHHHHHH---HHHHHHHhC
Confidence 333222110000 111100 0000 112222 11222111110 012233322 123333332
Q ss_pred hhcCCeEEEEeccHHHH----HHHH----------HHc----------------------------CCceEeCCCCHHHH
Q psy11640 327 ERRGDKTIVFSDNVFAL----KHYA----------VKM----------------------------NKPYIYGPTSQSER 364 (552)
Q Consensus 327 ~~~g~kvIVF~~~~~~~----~~l~----------~~L----------------------------~~~~i~G~~~~~eR 364 (552)
...++|||++++... ..|. +++ |....|.+|...+|
T Consensus 545 --gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR 622 (1674)
T KOG0951|consen 545 --GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDR 622 (1674)
T ss_pred --CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchH
Confidence 336999999986543 3332 111 34567899999999
Q ss_pred HHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE-----ec-----cCCCChhhHHHHhhhccccCCCCC
Q psy11640 365 IQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ-----IS-----SHGGSRRQEAQRLGRILRAKKGAI 426 (552)
Q Consensus 365 ~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~-----~~-----~~~~s~~q~~Qr~GRi~R~~~~k~ 426 (552)
..+-+.|.+ |.++|+|+|..++.|+|+| +++||+ |+ |..-+|....||.||+||+..+..
T Consensus 623 ~~~EdLf~~-g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ 692 (1674)
T KOG0951|consen 623 ELVEDLFAD-GHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTC 692 (1674)
T ss_pred HHHHHHHhc-CceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcC
Confidence 999999995 9999999999999999999 556665 33 444578899999999999887654
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.75 E-value=8.7e-17 Score=165.66 Aligned_cols=113 Identities=18% Similarity=0.319 Sum_probs=97.5
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEec
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQIS 402 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~ 402 (552)
+.+.++||-+-+..+++.|.++| .+.++|++...-||.+|+...+. |.+.|||....+-||||+|.++.|.++|
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~DvLVGINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLVGINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccEEEeehhhhccCCCcceeEEEEee
Confidence 57899999999999999999998 46789999999999999999996 9999999999999999999999999987
Q ss_pred c----CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHH
Q psy11640 403 S----HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY 447 (552)
Q Consensus 403 ~----~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~ 447 (552)
. -..|.+..+|-+||+.|...|+ |.+|-=.-.+++...+
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~Gk------vIlYAD~iT~sM~~Ai 565 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVNGK------VILYADKITDSMQKAI 565 (663)
T ss_pred cCccccccccchHHHHHHHHhhccCCe------EEEEchhhhHHHHHHH
Confidence 2 2358889999999999988875 7777444344555544
No 111
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.75 E-value=5.5e-17 Score=187.76 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=83.8
Q ss_pred cCCeEEEEeccHHHHHHHHHHcC--------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKMN--------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L~--------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
..+.+|||++....++.++..|. +..+||++++.+|.++++.+ +..+|||+|+++++|||||++++||.
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkIVLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRIVLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceEEEeccHHHhccccCCeeEEEe
Confidence 45789999999999999988882 34589999999999986544 34689999999999999999999998
Q ss_pred ecc-----------------CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 401 ISS-----------------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 401 ~~~-----------------~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
++. .+-|..++.||.||+||.++| .+|+|.+...
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G--------~cyRLyte~~ 405 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPG--------ICIRLYSEED 405 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCc--------eEEEecCHHH
Confidence 541 123567899999999999874 3688887643
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=6.5e-16 Score=171.27 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=89.2
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+.++.+-+......|.++||||.++...+.++..| + ...++++.++.||..+.+.|+. |. |+|||+++
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~-G~--VtIATnmA 507 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT-GA--VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC-Cc--EEEecCCc
Confidence 356887665545444468999999999999999999998 3 4569999999999999999996 65 99999999
Q ss_pred ccccCCCCC-------------------------------------CEEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 387 DTSFDLPEA-------------------------------------NVLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 387 ~~GlDlp~a-------------------------------------~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
|+|+||.=- =+||--. ..-|++-..|-.||+||-|..+
T Consensus 508 GRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTe-rheSrRID~QLrGRaGRQGDPG 582 (908)
T PRK13107 508 GRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTE-RHESRRIDNQLRGRAGRQGDAG 582 (908)
T ss_pred CCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecc-cCchHHHHhhhhcccccCCCCC
Confidence 999999732 1455444 5778999999999999977643
No 113
>KOG0352|consensus
Probab=99.71 E-value=1.2e-16 Score=160.01 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=88.0
Q ss_pred CeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC
Q psy11640 331 DKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG 405 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~ 405 (552)
+-.||+|.+++.++.++-.| ++..+|.++...||.++-+.+-+ +++.||++|-..|.|+|-|++..||+.+ ++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~PvI~AT~SFGMGVDKp~VRFViHW~-~~ 333 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPVIAATVSFGMGVDKPDVRFVIHWS-PS 333 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCEEEEEeccccccCCcceeEEEecC-ch
Confidence 47899999999999999988 34568999999999999999995 7999999999999999999999999999 79
Q ss_pred CChhhHHHHhhhccccCCCCCCCceeEEEEE
Q psy11640 406 GSRRQEAQRLGRILRAKKGAIAEEYNAFFYT 436 (552)
Q Consensus 406 ~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~ 436 (552)
.|..-|.|--||+||.|... .+..|.
T Consensus 334 qn~AgYYQESGRAGRDGk~S-----yCRLYY 359 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRS-----YCRLYY 359 (641)
T ss_pred hhhHHHHHhccccccCCCcc-----ceeeee
Confidence 99999999999999987633 455554
No 114
>KOG0351|consensus
Probab=99.71 E-value=6.8e-17 Score=182.29 Aligned_cols=293 Identities=16% Similarity=0.105 Sum_probs=190.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CC--
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PM-- 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~-- 95 (552)
+.+.++||||.||.++....+....+-+|||.|..+|+.-....+.. .+ ..-..+++..... ..
T Consensus 280 kd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~-~~---I~a~~L~s~q~~~~~~~i~q~l~~~~~ 355 (941)
T KOG0351|consen 280 KDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSK-KG---IPACFLSSIQTAAERLAILQKLANGNP 355 (941)
T ss_pred CceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhh-cC---cceeeccccccHHHHHHHHHHHhCCCC
Confidence 45778999999999999888888888999999999998765555522 12 2334455544331 12
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHh-cCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQ-NQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~-~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
..+|+-.|++++.....-. .....+. ..-..++|+||||-... ..|-|
T Consensus 356 ~ikilYvtPE~v~~~~~l~----~~~~~L~~~~~lal~vIDEAHCVSq-----------WgHdF---------------- 404 (941)
T KOG0351|consen 356 IIKILYVTPEKVVASEGLL----ESLADLYARGLLALFVIDEAHCVSQ-----------WGHDF---------------- 404 (941)
T ss_pred eEEEEEeCHHHhhcccchh----hHHHhccCCCeeEEEEecHHHHhhh-----------hcccc----------------
Confidence 4678889999887542211 1122221 11267999999885221 11111
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceeccc--ccch
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLRE--DDKI 252 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~--d~~~ 252 (552)
|| . ......+...++....|+||||-... .+.+
T Consensus 405 -Rp----------------~----------------------------Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi 439 (941)
T KOG0351|consen 405 -RP----------------S----------------------------YKRLGLLRIRFPGVPFIALTATATERVREDVI 439 (941)
T ss_pred -cH----------------H----------------------------HHHHHHHHhhCCCCCeEEeehhccHHHHHHHH
Confidence 10 0 01112233445567899999996422 1112
Q ss_pred hhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCe
Q psy11640 253 ADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332 (552)
Q Consensus 253 ~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~k 332 (552)
..|. +-.+. +....+..+-...+|..... ...-+..+..+-..+ .+..
T Consensus 440 ~~L~-l~~~~--------~~~~sfnR~NL~yeV~~k~~---------------------~~~~~~~~~~~~~~~--~~~s 487 (941)
T KOG0351|consen 440 RSLG-LRNPE--------LFKSSFNRPNLKYEVSPKTD---------------------KDALLDILEESKLRH--PDQS 487 (941)
T ss_pred HHhC-CCCcc--------eecccCCCCCceEEEEeccC---------------------ccchHHHHHHhhhcC--CCCC
Confidence 2221 11111 22233333333333322211 001112223333333 7789
Q ss_pred EEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCC
Q psy11640 333 TIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGS 407 (552)
Q Consensus 333 vIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s 407 (552)
+||+|.++..++.++..| .+.++|++++..+|..+-..|.. ++++|++||=+.|.|||-|++..||++.. |.|
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~VivATVAFGMGIdK~DVR~ViH~~l-Pks 565 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRVIVATVAFGMGIDKPDVRFVIHYSL-PKS 565 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeEEEEEeeccCCCCCCceeEEEECCC-chh
Confidence 999999999999999988 46789999999999999999996 79999999999999999999999999994 999
Q ss_pred hhhHHHHhhhccccCCCCCCCceeEEEEEEe
Q psy11640 408 RRQEAQRLGRILRAKKGAIAEEYNAFFYTLV 438 (552)
Q Consensus 408 ~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lv 438 (552)
..-|.|-.||+||.|.-. ..+.+|++-
T Consensus 566 ~E~YYQE~GRAGRDG~~s----~C~l~y~~~ 592 (941)
T KOG0351|consen 566 FEGYYQEAGRAGRDGLPS----SCVLLYGYA 592 (941)
T ss_pred HHHHHHhccccCcCCCcc----eeEEecchh
Confidence 999999999999988743 356666554
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.67 E-value=1.8e-14 Score=160.80 Aligned_cols=118 Identities=15% Similarity=0.234 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccc
Q psy11640 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTS 389 (552)
Q Consensus 315 K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~G 389 (552)
++..+...|......+.++||||.+...++.|+..| .+..+||++++.+|..++..|+. |++.++|+|+++++|
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~vlV~t~~L~rG 509 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLVGINLLREG 509 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceEEEEeCHHhCC
Confidence 444454445545567899999999999999999998 34678999999999999999995 899999999999999
Q ss_pred cCCCCCCEEEEecc----CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 390 FDLPEANVLIQISS----HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 390 lDlp~a~~VI~~~~----~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+|+|++++||+++. .+.++..|+||+||+||...| .++.+++..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G--------~~i~~~~~~ 557 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG--------KVILYADKI 557 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCC--------EEEEEecCC
Confidence 99999999999873 257889999999999996443 256666643
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.64 E-value=1e-15 Score=135.45 Aligned_cols=109 Identities=27% Similarity=0.366 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcccc
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADT 388 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~ 388 (552)
.|...+..++..+...+.++||||++...++.+...| ++..+||+++..+|..+++.|+. +...+|++|+++++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE-GEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc-CCCcEEEEcChhhc
Confidence 5677777777766456889999999999999999888 35689999999999999999996 78999999999999
Q ss_pred ccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 389 SFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 389 GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
|+|+|.+++||+++ ++|++..+.|++||++|.++.
T Consensus 91 G~d~~~~~~vi~~~-~~~~~~~~~Q~~GR~~R~~~~ 125 (131)
T cd00079 91 GIDLPNVSVVINYD-LPWSPSSYLQRIGRAGRAGQK 125 (131)
T ss_pred CcChhhCCEEEEeC-CCCCHHHheecccccccCCCC
Confidence 99999999999999 699999999999999999973
No 117
>KOG0329|consensus
Probab=99.64 E-value=1.2e-15 Score=143.67 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=157.5
Q ss_pred cCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC------CCCCcEE
Q psy11640 34 KRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK------PMGCGIL 100 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~------~~~~~Iv 100 (552)
+-.|.|||.+.+.+-... ...+||+|+|++|+.|..+|..+|... |...+.+|.|+..-+ .+.++|+
T Consensus 86 aksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~Phiv 165 (387)
T KOG0329|consen 86 AKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIV 165 (387)
T ss_pred cccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEE
Confidence 668999998876554321 236899999999999999999988864 778899998876321 1457999
Q ss_pred EEcccccc-cccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 101 VTTYSMIS-HTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 101 ItTy~~l~-~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
|+|++.+. ..+.++ |.-.+....|+|||.....
T Consensus 166 VgTPGrilALvr~k~---------l~lk~vkhFvlDEcdkmle------------------------------------- 199 (387)
T KOG0329|consen 166 VGTPGRILALVRNRS---------LNLKNVKHFVLDECDKMLE------------------------------------- 199 (387)
T ss_pred EcCcHHHHHHHHhcc---------CchhhcceeehhhHHHHHH-------------------------------------
Confidence 99999553 222222 2235677889997633211
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh----hccceeeecceecccccchhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV----QSHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~----~~~~~lgLTATp~r~d~~~~~L 255 (552)
...++|.+-+.+ +....+.+|||...+ +
T Consensus 200 ------------------------------------------~lDMrRDvQEifr~tp~~KQvmmfsatlske------i 231 (387)
T KOG0329|consen 200 ------------------------------------------QLDMRRDVQEIFRMTPHEKQVMMFSATLSKE------I 231 (387)
T ss_pred ------------------------------------------HHHHHHHHHHHhhcCcccceeeeeeeecchh------h
Confidence 012223232222 234456788887432 1
Q ss_pred hhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 256 NFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 256 ~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
...+ ..|-.++.++- + .-...++-....+|.. ......|.+.+.+||... .=.+++|
T Consensus 232 RpvC--~kFmQdPmEi~----v------DdE~KLtLHGLqQ~Yv---------kLke~eKNrkl~dLLd~L--eFNQVvI 288 (387)
T KOG0329|consen 232 RPVC--HKFMQDPMEIF----V------DDEAKLTLHGLQQYYV---------KLKENEKNRKLNDLLDVL--EFNQVVI 288 (387)
T ss_pred HHHH--HhhhcCchhhh----c------cchhhhhhhhHHHHHH---------hhhhhhhhhhhhhhhhhh--hhcceeE
Confidence 1100 00111111110 0 0000111111222211 123345677777787766 3458999
Q ss_pred EeccHHHHHHHHHHcCCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHh
Q psy11640 336 FSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRL 415 (552)
Q Consensus 336 F~~~~~~~~~l~~~L~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~ 415 (552)
|+.++.. +. |+. + +|+|++.|+|+|+-.+|.|++|| .|.++.+|.+|+
T Consensus 289 FvKsv~R-------------------------l~-f~k----r-~vat~lfgrgmdiervNi~~NYd-mp~~~DtYlHrv 336 (387)
T KOG0329|consen 289 FVKSVQR-------------------------LS-FQK----R-LVATDLFGRGMDIERVNIVFNYD-MPEDSDTYLHRV 336 (387)
T ss_pred eeehhhh-------------------------hh-hhh----h-hHHhhhhccccCcccceeeeccC-CCCCchHHHHHh
Confidence 9998765 11 542 3 89999999999999999999999 699999999999
Q ss_pred hhccccCCCCCCCceeEEEEEEecCC
Q psy11640 416 GRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 416 GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
||+||.|.. ...+++++..
T Consensus 337 ~rAgrfGtk-------glaitfvs~e 355 (387)
T KOG0329|consen 337 ARAGRFGTK-------GLAITFVSDE 355 (387)
T ss_pred hhhhccccc-------cceeehhcch
Confidence 999999874 3457777653
No 118
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.63 E-value=3e-15 Score=151.94 Aligned_cols=110 Identities=16% Similarity=0.379 Sum_probs=76.1
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHhc---C-----CcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCc------
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCTV---R-----KRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA------ 90 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~~---~-----~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~------ 90 (552)
...+.+++.-.+|+|||+++++++... . +++|||||+ .++.||..||.+|+......+..+.|..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 456778888899999999999988631 1 259999998 6889999999999953356888888776
Q ss_pred ccCCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 91 KDKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 91 ~~~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
.......+|+|+||+.+...... ...+.+...+|++||+||+|..
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~-----~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKK-----KDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TST-----HTTHHHHTSEEEEEEETTGGGG
T ss_pred ccccccceeeecccccccccccc-----ccccccccccceeEEEeccccc
Confidence 22335689999999998711111 1234555678999999988764
No 119
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=1.2e-15 Score=143.19 Aligned_cols=130 Identities=12% Similarity=0.259 Sum_probs=83.3
Q ss_pred hhhhhhhhhhHHHHHHHHH-hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEE
Q psy11640 7 ISGCKKKKKKKKKKKKKKK-KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICR 85 (552)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~ 85 (552)
++.+|++..++-.+.-... ..+..++.||||+|||++++.++.....+++|+||+..|++||.++|..+... ....
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~---~~~~ 80 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSE---KYNF 80 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTT---SEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhh---hhhh
Confidence 4667777777766544443 67888999999999999999888877669999999999999999999776642 1111
Q ss_pred EecC-------------cc-------cCCCCCcEEEEcccccccccccchhH-HH--HHHHHhcCcccEEEEccCCc
Q psy11640 86 FTSE-------------AK-------DKPMGCGILVTTYSMISHTQKRSWEA-DQ--TMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 86 ~~g~-------------~~-------~~~~~~~IvItTy~~l~~~~~~~~~~-~~--~~~~l~~~~~~liIvDE~h~ 139 (552)
.... .. .......++++|++++.......... +. .........+++||+||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 1100 00 01246789999999886431110000 00 00112235789999995444
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=9.8e-15 Score=162.62 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=91.5
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+.++..++......+.++||||.++...+.|+..| + ...+|+ .+.+|...+-.|.. +...|+|||+++
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~VtIATNMA 656 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGAVTIATNMA 656 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCeEEEeccCc
Confidence 345888887777665568999999999999999999999 3 345776 68899999999995 799999999999
Q ss_pred ccccCCC---CCCEE-----EEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 387 DTSFDLP---EANVL-----IQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 387 ~~GlDlp---~a~~V-----I~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
|+|+||+ .+..+ |... .+.|++.+.|++||+||.|..+
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgte-rhes~Rid~Ql~GRtGRqGdpG 702 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSE-RHESRRIDRQLRGRAGRQGDPG 702 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCC-CCchHHHHHHHhhhhhcCCCCc
Confidence 9999999 44322 5555 5889999999999999988743
No 121
>KOG0353|consensus
Probab=99.58 E-value=3.3e-14 Score=140.67 Aligned_cols=273 Identities=17% Similarity=0.130 Sum_probs=173.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc-----------CCC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-----------KPM 95 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~-----------~~~ 95 (552)
+.-..++||||.||++....++.-..+-+||+||..+|++...-++++.. ++...+..-+ .++ +..
T Consensus 109 ~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkqlg-i~as~lnans--ske~~k~v~~~i~nkds 185 (695)
T KOG0353|consen 109 GEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQLG-IDASMLNANS--SKEEAKRVEAAITNKDS 185 (695)
T ss_pred cCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhC-cchhhccCcc--cHHHHHHHHHHHcCCCc
Confidence 34456889999999999988888888999999999999987777776543 4322222111 111 112
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
.-..+..|++.++...+--. ++-..+....|.+|-+||.|-... ..+-|+
T Consensus 186 e~kliyvtpekiaksk~~mn---kleka~~~~~~~~iaidevhccsq-----------wghdfr---------------- 235 (695)
T KOG0353|consen 186 EFKLIYVTPEKIAKSKKFMN---KLEKALEAGFFKLIAIDEVHCCSQ-----------WGHDFR---------------- 235 (695)
T ss_pred eeEEEEecHHHHHHHHHHHH---HHHHHhhcceeEEEeecceeehhh-----------hCcccC----------------
Confidence 34677788887764321111 111233346788999999876321 111111
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L 255 (552)
| . .+...-+-..++....||||||...+ ...+.
T Consensus 236 -~---------------------------------------d-----y~~l~ilkrqf~~~~iigltatatn~--vl~d~ 268 (695)
T KOG0353|consen 236 -P---------------------------------------D-----YKALGILKRQFKGAPIIGLTATATNH--VLDDA 268 (695)
T ss_pred -c---------------------------------------c-----hHHHHHHHHhCCCCceeeeehhhhcc--hhhHH
Confidence 0 0 11112133456677799999997643 12222
Q ss_pred hhhhcc---cccccCHHHHHHcCCCcceEEEEEEc-CCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHH--hhc
Q psy11640 256 NFLIGP---KLYEANWLELQKRGFIARVQCAEVWC-PMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYH--ERR 329 (552)
Q Consensus 256 ~~lig~---~~~~~~~~el~~~g~l~~~~~~~v~~-~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~--~~~ 329 (552)
..+++- ..| ..||-.|-...+|.- |-+.+ ..++++.+.. ...
T Consensus 269 k~il~ie~~~tf--------~a~fnr~nl~yev~qkp~n~d------------------------d~~edi~k~i~~~f~ 316 (695)
T KOG0353|consen 269 KDILCIEAAFTF--------RAGFNRPNLKYEVRQKPGNED------------------------DCIEDIAKLIKGDFA 316 (695)
T ss_pred HHHHhHHhhhee--------ecccCCCCceeEeeeCCCChH------------------------HHHHHHHHHhccccC
Confidence 222211 111 123333332223221 11111 1222333222 136
Q ss_pred CCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH 404 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~ 404 (552)
|...||+|-+....+.++..| | +..+|..+.+.+|.-+-+.+-. |+++|+|+|-+.|.|||-|++..||+.+ .
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqvivatvafgmgidkpdvrfvihhs-l 394 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQVIVATVAFGMGIDKPDVRFVIHHS-L 394 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEEEEEEeeecccCCCCCeeEEEecc-c
Confidence 778999999999999998888 3 4568889999999999999996 8999999999999999999999999998 6
Q ss_pred CCChhhHHH
Q psy11640 405 GGSRRQEAQ 413 (552)
Q Consensus 405 ~~s~~q~~Q 413 (552)
|.|...|.|
T Consensus 395 ~ksienyyq 403 (695)
T KOG0353|consen 395 PKSIENYYQ 403 (695)
T ss_pred chhHHHHHH
Confidence 999999999
No 122
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.57 E-value=2.7e-14 Score=161.46 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=87.5
Q ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHc----C-CceEeCCCCHHHHHHHHHhhc---cCCCeeEEEEeCccccccCCCCC
Q psy11640 324 AYHERRGDKTIVFSDNVFALKHYAVKM----N-KPYIYGPTSQSERIQILQNFK---LNPKVNTIFVSKVADTSFDLPEA 395 (552)
Q Consensus 324 ~~~~~~g~kvIVF~~~~~~~~~l~~~L----~-~~~i~G~~~~~eR~~il~~F~---~~g~~~vLv~T~v~~~GlDlp~a 395 (552)
......+.+++|.++++..|..+...| . +..+||.+...+|.+.++..+ +.....|+|+|+|.+.|+|+. .
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-f 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-c
Confidence 334457889999999999999999988 2 567999999999999887554 235789999999999999997 7
Q ss_pred CEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchh
Q psy11640 396 NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444 (552)
Q Consensus 396 ~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e 444 (552)
+++|-= .......+||.||++|.|... +..+++|.........
T Consensus 513 d~mITe---~aPidSLIQR~GRv~R~g~~~---~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 513 DVLITE---LAPIDSLIQRAGRVNRHGKKE---NGKIYVYNDEERGPYL 555 (733)
T ss_pred Ceeeec---CCCHHHHHHHHHHHhhccccc---CCceeEeecccCCCch
Confidence 877641 344667999999999988321 2256666665554433
No 123
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.56 E-value=3.7e-15 Score=120.18 Aligned_cols=70 Identities=29% Similarity=0.395 Sum_probs=66.3
Q ss_pred CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccC
Q psy11640 351 NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422 (552)
Q Consensus 351 ~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~ 422 (552)
.+..+||++++.+|+.+++.|++ +..++||+|+++++|+|+|.+++||+++ ++||+.++.|++||++|.|
T Consensus 9 ~~~~i~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~Gid~~~~~~vi~~~-~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 9 KVAIIHGDMSQKERQEILKKFNS-GEIRVLIATDILGEGIDLPDASHVIFYD-PPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHT-TSSSEEEESCGGTTSSTSTTESEEEESS-SESSHHHHHHHHTTSSTTT
T ss_pred cEEEEECCCCHHHHHHHHHHhhc-cCceEEEeeccccccccccccccccccc-cCCCHHHHHHHhhcCCCCC
Confidence 46789999999999999999996 7899999999999999999999999999 6999999999999999975
No 124
>KOG0349|consensus
Probab=99.53 E-value=4.9e-14 Score=141.62 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=94.2
Q ss_pred cCCeEEEEeccHHHHHHHHHHc--------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM--------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
..+++||||.+...++.|.+++ .+..+||+..+.||.+-|+.|+. .++++||+|+++++||||..+-.+|+
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvkflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVKFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeEEEEEehhhhccccccCCceEEE
Confidence 6789999999999999999998 25679999999999999999996 89999999999999999999999999
Q ss_pred eccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 401 ISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 401 ~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+. .|.....|++|+||+||+.+ -...++||+.-
T Consensus 583 vt-lpd~k~nyvhrigrvgraer-------mglaislvat~ 615 (725)
T KOG0349|consen 583 VT-LPDDKTNYVHRIGRVGRAER-------MGLAISLVATV 615 (725)
T ss_pred Ee-cCcccchhhhhhhccchhhh-------cceeEEEeecc
Confidence 99 68889999999999999876 35567888753
No 125
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.51 E-value=3.7e-13 Score=151.64 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=72.7
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhh-CCCCCcEEEEecCcccCCCCCcEEEEcc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWS-TADDSMICRFTSEAKDKPMGCGILVTTY 104 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~-~~~~~~I~~~~g~~~~~~~~~~IvItTy 104 (552)
.-++++|||+|||++|-.+++ ..+.+++...|.++|.+|-.++|..-+ .. ...|++++|+..-. .++.++|.|-
T Consensus 136 sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~IN-~~A~clvMTT 213 (1041)
T COG4581 136 SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSIN-PDAPCLVMTT 213 (1041)
T ss_pred cEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceeeC-CCCceEEeeH
Confidence 446789999999999877765 467789999999999999999998444 32 35679999987432 3577888777
Q ss_pred cccccccccchhHHHHHHHHhcCcccEEEEccCC
Q psy11640 105 SMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGV 138 (552)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h 138 (552)
+.|.+...+. .+.+ .+...||+||.|
T Consensus 214 EILRnMlyrg------~~~~--~~i~~ViFDEvH 239 (1041)
T COG4581 214 EILRNMLYRG------SESL--RDIEWVVFDEVH 239 (1041)
T ss_pred HHHHHHhccC------cccc--cccceEEEEeee
Confidence 8775432222 1223 567789999554
No 126
>KOG0950|consensus
Probab=99.51 E-value=1.4e-13 Score=150.86 Aligned_cols=301 Identities=16% Similarity=0.132 Sum_probs=168.7
Q ss_pred cCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc--CCCCCcEEEEc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--KPMGCGILVTT 103 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~--~~~~~~IvItT 103 (552)
.+-.+||++|||++|-.++.. .++.++.+.|-...+.--...+..|+.--+..|..|+|.... ......|.|+|
T Consensus 243 liys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~t 322 (1008)
T KOG0950|consen 243 LIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIAT 322 (1008)
T ss_pred eEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeee
Confidence 455699999999998776653 467789999976655545555666664334566666654321 22457899999
Q ss_pred ccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCC
Q psy11640 104 YSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN 183 (552)
Q Consensus 104 y~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~ 183 (552)
.++-....++.+ +.=+....++||+||-|-... .-.
T Consensus 323 iEkanslin~li------e~g~~~~~g~vvVdElhmi~d------------------~~r-------------------- 358 (1008)
T KOG0950|consen 323 IEKANSLINSLI------EQGRLDFLGMVVVDELHMIGD------------------KGR-------------------- 358 (1008)
T ss_pred hHhhHhHHHHHH------hcCCccccCcEEEeeeeeeec------------------ccc--------------------
Confidence 886543222222 111125689999997543111 000
Q ss_pred CccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHH-Hhhh-ccceeeecceecccccchhhhhhhhcc
Q psy11640 184 GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVL-TIVQ-SHCKLGLTATLLREDDKIADLNFLIGP 261 (552)
Q Consensus 184 g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l-~~~~-~~~~lgLTATp~r~d~~~~~L~~lig~ 261 (552)
.+ .-..+..+++ .... .-..+|+|||....+. |.+++..
T Consensus 359 ---------------------------------g~--~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~l----L~~~L~A 399 (1008)
T KOG0950|consen 359 ---------------------------------GA--ILELLLAKILYENLETSVQIIGMSATIPNNSL----LQDWLDA 399 (1008)
T ss_pred ---------------------------------ch--HHHHHHHHHHHhccccceeEeeeecccCChHH----HHHHhhh
Confidence 00 0001111121 1111 1247999999865433 3333333
Q ss_pred cccccCHH--HHHHcCCCcceEEEEEEcCCC-HHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEec
Q psy11640 262 KLYEANWL--ELQKRGFIARVQCAEVWCPMS-PEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSD 338 (552)
Q Consensus 262 ~~~~~~~~--el~~~g~l~~~~~~~v~~~l~-~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~ 338 (552)
.+|..++. +|. .++.+- ......+ ....+++... .....-..+| ..+..+..+..-.+.++||||+
T Consensus 400 ~~y~t~fRPv~L~--E~ik~G---~~i~~~~r~~~lr~ia~l---~~~~~g~~dp---D~~v~L~tet~~e~~~~lvfc~ 468 (1008)
T KOG0950|consen 400 FVYTTRFRPVPLK--EYIKPG---SLIYESSRNKVLREIANL---YSSNLGDEDP---DHLVGLCTETAPEGSSVLVFCP 468 (1008)
T ss_pred hheecccCcccch--hccCCC---cccccchhhHHHHHhhhh---hhhhcccCCC---cceeeehhhhhhcCCeEEEEcC
Confidence 33332211 111 000000 0000000 0000000000 0000001122 2222333333346678999999
Q ss_pred cHHHHHHHHHHc-------------------------------------------CCceEeCCCCHHHHHHHHHhhccCC
Q psy11640 339 NVFALKHYAVKM-------------------------------------------NKPYIYGPTSQSERIQILQNFKLNP 375 (552)
Q Consensus 339 ~~~~~~~l~~~L-------------------------------------------~~~~i~G~~~~~eR~~il~~F~~~g 375 (552)
++.-++.++..+ |+.+.|.+++.+||..+-..|+. |
T Consensus 469 sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~-g 547 (1008)
T KOG0950|consen 469 SKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFRE-G 547 (1008)
T ss_pred cccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHh-c
Confidence 877666554332 45678899999999999999996 9
Q ss_pred CeeEEEEeCccccccCCCCCCEEEEec---cCCCChhhHHHHhhhccccCCCC
Q psy11640 376 KVNTIFVSKVADTSFDLPEANVLIQIS---SHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 376 ~~~vLv~T~v~~~GlDlp~a~~VI~~~---~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
.+.|+++|+.+.-|+|+|+-.++|-.. ...-+.-+|.|++||+||.|-+.
T Consensus 548 ~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT 600 (1008)
T KOG0950|consen 548 NIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDT 600 (1008)
T ss_pred CeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccccc
Confidence 999999999999999999666665532 22446779999999999998754
No 127
>KOG0947|consensus
Probab=99.50 E-value=2.2e-13 Score=148.31 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=71.1
Q ss_pred eecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcccccc
Q psy11640 32 KKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMIS 108 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l~ 108 (552)
+.++|-+|||++|-.+|+ ....+++.-.|-++|-+|-.++|+.-++ .+++++|+..-.+ .+.++|+|-+.|.
T Consensus 317 VAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~----DvgLlTGDvqinP-eAsCLIMTTEILR 391 (1248)
T KOG0947|consen 317 VAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG----DVGLLTGDVQINP-EASCLIMTTEILR 391 (1248)
T ss_pred EEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc----ccceeecceeeCC-CcceEeehHHHHH
Confidence 448999999999866654 5677999999999999999999996653 5678999875543 5778888878765
Q ss_pred cccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 109 HTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
+...+. .+.+ ++...||+||.|=
T Consensus 392 sMLYrg------adli--RDvE~VIFDEVHY 414 (1248)
T KOG0947|consen 392 SMLYRG------ADLI--RDVEFVIFDEVHY 414 (1248)
T ss_pred HHHhcc------cchh--hccceEEEeeeee
Confidence 432222 1233 5678899998764
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.1e-12 Score=146.00 Aligned_cols=113 Identities=15% Similarity=0.031 Sum_probs=79.4
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----CCCCcEEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----PMGCGILV 101 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~IvI 101 (552)
.+++-|+||.|||++|..++. ..++.+-||+|+..|+.|-.+.+..++..-...+++++++.... .-.++|++
T Consensus 97 G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~dI~Y 176 (913)
T PRK13103 97 GKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITY 176 (913)
T ss_pred CccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCCEEE
Confidence 467789999999999876654 46789999999999999988888877765556788887765321 13489999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAA 142 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~ 142 (552)
+|...+.....+..-.... +..-...++++|+||+|...-
T Consensus 177 GT~~e~gFDYLrD~~~~~~-~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 177 GTNNEFGFDYLRDNMAFSL-DDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred Ecccccccchhhccceech-hhhcccccceeEechhhheec
Confidence 9999874332221100000 111236899999999887544
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=2.3e-12 Score=143.53 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=75.6
Q ss_pred chhHHHH-HHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---CCc--eEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 313 PNKYRAT-QYLIAYHERRGDKTIVFSDNVFALKHYAVKM---NKP--YIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 313 ~~K~~~l-~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~~~--~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
..|+.++ .++.+.| ..|..|||-|.++...+.|+..| +++ .+.......|- +++..--. .-.|.|||.++
T Consensus 551 ~~k~~ai~~ei~~~~-~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea-~iia~AG~--~g~VTIATNmA 626 (970)
T PRK12899 551 REKYHAIVAEIASIH-RKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEA-EIIAGAGK--LGAVTVATNMA 626 (970)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHH-HHHHhcCC--CCcEEEeeccc
Confidence 4577755 4555555 58899999999999999999999 333 34444322222 34433221 34799999999
Q ss_pred ccccCCCCCC--------EEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 387 DTSFDLPEAN--------VLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 387 ~~GlDlp~a~--------~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
|+|.||.--. +||.-. .+-|++-..|-.||+||-|..+
T Consensus 627 GRGTDIkl~~~v~~~GGLhVIgTe-r~es~Rid~Ql~GRagRQGdpG 672 (970)
T PRK12899 627 GRGTDIKLDEEAVAVGGLYVIGTS-RHQSRRIDRQLRGRCARLGDPG 672 (970)
T ss_pred cCCcccccCchHHhcCCcEEEeec-cCchHHHHHHHhcccccCCCCC
Confidence 9999996432 455444 5789999999999999977643
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.44 E-value=4.6e-12 Score=139.94 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=76.3
Q ss_pred hhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---------- 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---------- 93 (552)
.+..++-+.||+|||-+.+.+|. ..++.+|||||-..|..|..+.|+..++ ..|.++++.-.+.
T Consensus 217 ~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~ 293 (730)
T COG1198 217 FAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRAR 293 (730)
T ss_pred ccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC---CChhhhcccCChHHHHHHHHHHh
Confidence 56778889999999999888776 4578999999999999999999998876 5788888765431
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
.....|+|+|.+.+- +.-.+.++||+||=|-
T Consensus 294 ~G~~~vVIGtRSAlF---------------~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 294 RGEARVVIGTRSALF---------------LPFKNLGLIIVDEEHD 324 (730)
T ss_pred cCCceEEEEechhhc---------------CchhhccEEEEecccc
Confidence 266899999998662 2237899999997543
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=7.6e-12 Score=136.27 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=75.9
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----CCCCcEEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----PMGCGILV 101 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~IvI 101 (552)
..++-|.||.|||++|..++. ..++.+-||+|+..|+.|-.+.+..++..-...|+.++++.... .-.++|+-
T Consensus 93 G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~~DItY 172 (764)
T PRK12326 93 GDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYACDVTY 172 (764)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHcCCCEE
Confidence 356779999999999887664 45789999999999999977777766544445788887765321 14589999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
+|...+.....|..-.... +..-...+.+.|+||+.-
T Consensus 173 gTn~e~gFDyLRDnm~~~~-~~~v~R~~~faIVDEvDS 209 (764)
T PRK12326 173 ASVNEIGFDVLRDQLVTDV-ADLVSPNPDVAIIDEADS 209 (764)
T ss_pred cCCcccccccchhhhccCh-HhhcCCccceeeecchhh
Confidence 9988776543333211111 112236788999998644
No 132
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.43 E-value=4.1e-13 Score=119.16 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=76.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------CCCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------PMGC 97 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~~~~ 97 (552)
..++.+|||+|||.+++.++... .++++|+||+..++.||.+.+..+... ...+..+.+..... ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 45788999999999998887643 378999999999999999999988853 44566666654332 3568
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
+|+++||+++....... ......++++|+||+|..
T Consensus 81 ~i~i~t~~~~~~~~~~~--------~~~~~~~~~iiiDE~h~~ 115 (144)
T cd00046 81 DIVVGTPGRLLDELERL--------KLSLKKLDLLILDEAHRL 115 (144)
T ss_pred CEEEECcHHHHHHHHcC--------CcchhcCCEEEEeCHHHH
Confidence 99999999875321100 011257999999987763
No 133
>KOG0922|consensus
Probab=99.42 E-value=7.5e-12 Score=133.22 Aligned_cols=287 Identities=14% Similarity=0.120 Sum_probs=172.2
Q ss_pred ccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHh-hhCCCCCcEEEEecCcccCCCCCcEEEEc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKL-WSTADDSMICRFTSEAKDKPMGCGILVTT 103 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~-~~~~~~~~I~~~~g~~~~~~~~~~IvItT 103 (552)
=.++++.||+|||-+---.+. ...+.+.+-=|+++.+..-++.... ....-...|+--.--.........|...|
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymT 147 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMT 147 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEEEec
Confidence 346679999999987544443 2344577777888776666555542 22211223331110000011246788999
Q ss_pred ccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCC
Q psy11640 104 YSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPN 183 (552)
Q Consensus 104 y~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~ 183 (552)
-++|... -..+.+ -..+++||+||||...-..++
T Consensus 148 DG~LLRE--------~l~Dp~-LskYsvIIlDEAHERsl~TDi------------------------------------- 181 (674)
T KOG0922|consen 148 DGMLLRE--------ILKDPL-LSKYSVIILDEAHERSLHTDI------------------------------------- 181 (674)
T ss_pred chHHHHH--------HhcCCc-cccccEEEEechhhhhhHHHH-------------------------------------
Confidence 9988542 111211 268999999999874321111
Q ss_pred CccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhhcc-c
Q psy11640 184 GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGP-K 262 (552)
Q Consensus 184 g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~lig~-~ 262 (552)
--...++++..-+.-+.+.+|||.. ...+..+|+. .
T Consensus 182 --------------------------------------LlGlLKki~~~R~~LklIimSATld-----a~kfS~yF~~a~ 218 (674)
T KOG0922|consen 182 --------------------------------------LLGLLKKILKKRPDLKLIIMSATLD-----AEKFSEYFNNAP 218 (674)
T ss_pred --------------------------------------HHHHHHHHHhcCCCceEEEEeeeec-----HHHHHHHhcCCc
Confidence 0112233444334446788999983 2233333332 1
Q ss_pred ccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHh-hcCCeEEEEeccHH
Q psy11640 263 LYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE-RRGDKTIVFSDNVF 341 (552)
Q Consensus 263 ~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~-~~g~kvIVF~~~~~ 341 (552)
++.. .|-.-|+++. +++-+ -.+|+.. ++.-.++.|. .+.+-+|||-.-.+
T Consensus 219 i~~i-------~GR~fPVei~--y~~~p---~~dYv~a-----------------~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 219 ILTI-------PGRTFPVEIL--YLKEP---TADYVDA-----------------ALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred eEee-------cCCCCceeEE--eccCC---chhhHHH-----------------HHHHHHHHHccCCCCCEEEEeCCHH
Confidence 1111 3444454432 22211 1234332 2222233332 24457999999998
Q ss_pred HHHHHHHHc---------C----CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE--------
Q psy11640 342 ALKHYAVKM---------N----KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ-------- 400 (552)
Q Consensus 342 ~~~~l~~~L---------~----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~-------- 400 (552)
.++..++.| + +..++|.++.+++.++.+.--. |.-+|+++|.++++.|.||++..||=
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~-g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPP-GKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCC-CcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 888887777 1 2358999999999888777664 67889999999999999999999975
Q ss_pred ecc---------CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 401 ISS---------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 401 ~~~---------~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
|+. .|-|-.+..||.||+||.++|+ +|+|-++..
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGk--------cyRLYte~~ 391 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRTGPGK--------CYRLYTESA 391 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCCCCce--------EEEeeeHHH
Confidence 220 1347788999999999999976 688887643
No 134
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.42 E-value=5.8e-12 Score=145.41 Aligned_cols=319 Identities=15% Similarity=0.090 Sum_probs=191.5
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc------C
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD------K 93 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~------~ 93 (552)
..+++++++=-+|||||++..-++.. ....++|||.+..|-.|..++|..+...... .. ...+.+ .
T Consensus 271 ~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~--~~~s~~~Lk~~l~ 347 (962)
T COG0610 271 GDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP--KAESTSELKELLE 347 (962)
T ss_pred CcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc--cccCHHHHHHHHh
Confidence 35678999999999999987655432 2346999999999999999999988743211 11 111111 0
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCC
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 173 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 173 (552)
.....|+|||.|-+....... .........-++|+|||||.+-+.
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~------~~~~~~~~~ivvI~DEaHRSQ~G~----------------------------- 392 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKED------ELELLKRKNVVVIIDEAHRSQYGE----------------------------- 392 (962)
T ss_pred cCCCcEEEEEecccchhhhcc------cccccCCCcEEEEEechhhccccH-----------------------------
Confidence 134689999999886432111 011123566689999999853210
Q ss_pred CCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchh
Q psy11640 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIA 253 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~ 253 (552)
.+ ..+...++....+|+||||+..++..
T Consensus 393 --------------------------------------------~~-------~~~~~~~~~a~~~gFTGTPi~~~d~~- 420 (962)
T COG0610 393 --------------------------------------------LA-------KLLKKALKKAIFIGFTGTPIFKEDKD- 420 (962)
T ss_pred --------------------------------------------HH-------HHHHHHhccceEEEeeCCcccccccc-
Confidence 00 11334456678999999999876554
Q ss_pred hhhhhhcccccccCHHHHHHcCCCcceEEEEE-EcCCCHHHHH-------HHHhhhh---h-------hhhhHHhcCchh
Q psy11640 254 DLNFLIGPKLYEANWLELQKRGFIARVQCAEV-WCPMSPEFYR-------EYLVCKT---S-------KRLLLYVMNPNK 315 (552)
Q Consensus 254 ~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v-~~~l~~~~~~-------~y~~~~~---~-------~~~~~~~~~~~K 315 (552)
.-...+|..+..++..+.++.|.+.|..+... ..++..+... ....... . .......+.+.+
T Consensus 421 tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r 500 (962)
T COG0610 421 TTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVR 500 (962)
T ss_pred chhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHH
Confidence 23456788888899999999999886655443 2222221111 0111100 0 001111222222
Q ss_pred -HHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHc--------------C-------CceEeCC------CCHHHH
Q psy11640 316 -YRATQYLIAYHE---RRGDKTIVFSDNVFALKHYAVKM--------------N-------KPYIYGP------TSQSER 364 (552)
Q Consensus 316 -~~~l~~Ll~~~~---~~g~kvIVF~~~~~~~~~l~~~L--------------~-------~~~i~G~------~~~~eR 364 (552)
.++..++..... ..+.++.+.+.++..+..+.... + ....... ....++
T Consensus 501 ~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 580 (962)
T COG0610 501 LIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKDEK 580 (962)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHHHH
Confidence 234444444332 23447777666666333222221 0 0001111 123445
Q ss_pred HHHHHhh-ccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCC-CCCCceeEEEEEEec
Q psy11640 365 IQILQNF-KLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKG-AIAEEYNAFFYTLVS 439 (552)
Q Consensus 365 ~~il~~F-~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~-k~~~~~~v~vy~lvs 439 (552)
..+..+| ..+..+++||.++++=+|+|.|.++++.+ |- +--....+|++.|+-|+.++ |. ...|.+++.
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK-~Lk~H~L~QAisRtNR~~~~~K~----~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DK-PLKYHNLIQAISRTNRVFPGKKK----FGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-cc-ccccchHHHHHHHhccCCCCCCC----CcEEEECcc
Confidence 5566665 44468999999999999999999998865 42 44456689999999999988 44 466777765
No 135
>KOG0948|consensus
Probab=99.40 E-value=1.4e-12 Score=139.00 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=71.6
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcccc
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSM 106 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~ 106 (552)
-++.+-|.+|||++|-.+|+ +.++|++.-.|-++|-+|-++|+..=+ ..|+..+|+..-.| ++..+|.|-+.
T Consensus 147 VLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF----~DVGLMTGDVTInP-~ASCLVMTTEI 221 (1041)
T KOG0948|consen 147 VLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEF----KDVGLMTGDVTINP-DASCLVMTTEI 221 (1041)
T ss_pred EEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHh----cccceeecceeeCC-CCceeeeHHHH
Confidence 35669999999999876665 568899999999999999999998544 26889999864433 46677888776
Q ss_pred cccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 107 ISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 107 l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
|.+...|. .++| .+..-||+||.|=+
T Consensus 222 LRsMLYRG---SEvm-----rEVaWVIFDEIHYM 247 (1041)
T KOG0948|consen 222 LRSMLYRG---SEVM-----REVAWVIFDEIHYM 247 (1041)
T ss_pred HHHHHhcc---chHh-----heeeeEEeeeehhc
Confidence 64332221 1233 56777999988754
No 136
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=7.2e-13 Score=106.95 Aligned_cols=70 Identities=31% Similarity=0.412 Sum_probs=65.5
Q ss_pred CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccC
Q psy11640 351 NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422 (552)
Q Consensus 351 ~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~ 422 (552)
.+..+||+++..+|..+++.|++ +...+||+|+++++|+|+|.+++||+++ +++|+.++.|++||++|.+
T Consensus 13 ~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~Gi~~~~~~~vi~~~-~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 13 KVARLHGGLSQEEREEILEKFNN-GKIKVLVATDVAERGLDLPGVDLVIIYD-LPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc-CCCeEEEECChhhCCcChhcCCEEEEeC-CCCCHHHHHHhhcccccCC
Confidence 45689999999999999999996 7889999999999999999999999999 6999999999999999964
No 137
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.34 E-value=3.1e-11 Score=135.30 Aligned_cols=289 Identities=16% Similarity=0.175 Sum_probs=169.8
Q ss_pred hccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCC-CCcEEE-EecCcccCCCCCcEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTAD-DSMICR-FTSEAKDKPMGCGILV 101 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~-~~~I~~-~~g~~~~~~~~~~IvI 101 (552)
.--++++|||+|||-+-=..+.. ..+.+.+.=|++.-+..-++.+..-++.+ ...|+- +-.+.+. .....|-+
T Consensus 66 ~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~-s~~Trik~ 144 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV-SPRTRIKV 144 (845)
T ss_pred CEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccC-CCCceeEE
Confidence 34566799999999775444433 23467777788876666666666544432 223331 1111111 12456888
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcccc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVA 181 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~ 181 (552)
.|-++|... +.+.-.-..+++||+||+|......
T Consensus 145 mTdGiLlre---------i~~D~~Ls~ys~vIiDEaHERSl~t------------------------------------- 178 (845)
T COG1643 145 MTDGILLRE---------IQNDPLLSGYSVVIIDEAHERSLNT------------------------------------- 178 (845)
T ss_pred eccHHHHHH---------HhhCcccccCCEEEEcchhhhhHHH-------------------------------------
Confidence 998888542 1111112689999999998754311
Q ss_pred CCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhhhc
Q psy11640 182 PNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIG 260 (552)
Q Consensus 182 ~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~lig 260 (552)
|+++. ....++...+ .-..|.+|||.- ...+..+++
T Consensus 179 ------------------DilLg--------------------llk~~~~~rr~DLKiIimSATld-----~~rfs~~f~ 215 (845)
T COG1643 179 ------------------DILLG--------------------LLKDLLARRRDDLKLIIMSATLD-----AERFSAYFG 215 (845)
T ss_pred ------------------HHHHH--------------------HHHHHHhhcCCCceEEEEecccC-----HHHHHHHcC
Confidence 12111 1122344444 245688999973 233444443
Q ss_pred c-cccccCHHHHHHcCCCcceEEEEEEc-CCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHH-hhcCCeEEEEe
Q psy11640 261 P-KLYEANWLELQKRGFIARVQCAEVWC-PMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYH-ERRGDKTIVFS 337 (552)
Q Consensus 261 ~-~~~~~~~~el~~~g~l~~~~~~~v~~-~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~-~~~g~kvIVF~ 337 (552)
. .+.+. .|---|++ +.. +... .+|. -...+...+..+ ....+-+|||-
T Consensus 216 ~apvi~i-------~GR~fPVe---i~Y~~~~~---~d~~----------------l~~ai~~~v~~~~~~~~GdILvFL 266 (845)
T COG1643 216 NAPVIEI-------EGRTYPVE---IRYLPEAE---ADYI----------------LLDAIVAAVDIHLREGSGSILVFL 266 (845)
T ss_pred CCCEEEe-------cCCccceE---EEecCCCC---cchh----------------HHHHHHHHHHHhccCCCCCEEEEC
Confidence 2 11111 23222322 222 1111 1110 011222222222 12456899999
Q ss_pred ccHHHHHHHHHHc-----C----CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE--------
Q psy11640 338 DNVFALKHYAVKM-----N----KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ-------- 400 (552)
Q Consensus 338 ~~~~~~~~l~~~L-----~----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~-------- 400 (552)
.-...++...+.| + +.-+||.++.+++.++++--.. +.-+|+++|++++++|.||++.+||=
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~-~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPG-GKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCC-CcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9888877666655 1 3458999999999997776653 44559999999999999999999985
Q ss_pred ecc---------CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchh
Q psy11640 401 ISS---------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444 (552)
Q Consensus 401 ~~~---------~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e 444 (552)
|+. .+-|....-||.||+||.++|. .|+|-+++..+
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGi--------cyRLyse~~~~ 390 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRTGPGI--------CYRLYSEEDFL 390 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccCCCce--------EEEecCHHHHH
Confidence 221 1336677899999999999864 68888875443
No 138
>KOG0383|consensus
Probab=99.33 E-value=5.5e-13 Score=145.13 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=66.0
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----CCceEeCCCCHHHHHHHHHhhccCCCee--EEEEeCc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----NKPYIYGPTSQSERIQILQNFKLNPKVN--TIFVSKV 385 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~~~~i~G~~~~~eR~~il~~F~~~g~~~--vLv~T~v 385 (552)
...|+.+|..+++.....|+||+||++.+..++.|...+ .+.+++|..+..+|+..+++|+..+.-+ +|.+|.+
T Consensus 613 ~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 345888888888888889999999999999999999998 3578999999999999999999644444 4555899
Q ss_pred cccc
Q psy11640 386 ADTS 389 (552)
Q Consensus 386 ~~~G 389 (552)
+|.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 9987
No 139
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.32 E-value=5.9e-11 Score=137.08 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=71.7
Q ss_pred HhhcCCeEEEEeccHHHHHHHHHHcC-------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEE
Q psy11640 326 HERRGDKTIVFSDNVFALKHYAVKMN-------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVL 398 (552)
Q Consensus 326 ~~~~g~kvIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~V 398 (552)
....++++|||+.+...++.+...|. ...+..+.. .+|.+++++|+. ++..||++|....||||+|+..++
T Consensus 670 ~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~-~~~~iLlgt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 670 TAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNN-GEKAILLGTSSFWEGVDFPGNGLV 747 (850)
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHh-CCCeEEEEcceeecccccCCCceE
Confidence 33456799999999999998888773 344444333 579999999996 788899999999999999998844
Q ss_pred --EEeccC---CCCh--------------------------hhHHHHhhhccccCCCC
Q psy11640 399 --IQISSH---GGSR--------------------------RQEAQRLGRILRAKKGA 425 (552)
Q Consensus 399 --I~~~~~---~~s~--------------------------~q~~Qr~GRi~R~~~~k 425 (552)
|+..-| |.+| ..+.|.+||.-|...++
T Consensus 748 ~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~ 805 (850)
T TIGR01407 748 CLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDR 805 (850)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCce
Confidence 443211 2111 23478999999977654
No 140
>KOG0953|consensus
Probab=99.28 E-value=1.5e-10 Score=120.38 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=73.9
Q ss_pred hcCCeEEEEecc-HHHHH-HHHHHc--CCceEeCCCCHHHHHHHHHhhcc-CCCeeEEEEeCccccccCCCCCCEEEEec
Q psy11640 328 RRGDKTIVFSDN-VFALK-HYAVKM--NKPYIYGPTSQSERIQILQNFKL-NPKVNTIFVSKVADTSFDLPEANVLIQIS 402 (552)
Q Consensus 328 ~~g~kvIVF~~~-~~~~~-~l~~~L--~~~~i~G~~~~~eR~~il~~F~~-~g~~~vLv~T~v~~~GlDlp~a~~VI~~~ 402 (552)
.+|+-++-|+.. +..+. .|.+.. .+.+|+|++|++.|..--..|++ +++++|||||++.|.|+||- ++.||+++
T Consensus 356 k~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~s 434 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYS 434 (700)
T ss_pred CCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEee
Confidence 478888888875 22222 233333 37899999999999999999985 25899999999999999996 88898876
Q ss_pred cC--------CCChhhHHHHhhhccccCCC
Q psy11640 403 SH--------GGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 403 ~~--------~~s~~q~~Qr~GRi~R~~~~ 424 (552)
-. +-+..|..|-.||+||-+..
T Consensus 435 l~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 435 LIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred cccCCcccceeccHHHHHHHhhcccccccC
Confidence 21 12456889999999998663
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.27 E-value=5.3e-11 Score=131.53 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=73.5
Q ss_pred hhhccCeecCCCCchhHHHHHHH---HhcCCcEEEEecCchhHHHHHHHHHhhhCCCC-CcEEE-EecCcccC-------
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTAC---CTVRKRALVLCNSGVSVEQWKHQFKLWSTADD-SMICR-FTSEAKDK------- 93 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i---~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~-~~I~~-~~g~~~~~------- 93 (552)
+.+--.+++|||.|||--++.+. +..++++++|+||+.|+.|..+.+++|..-.. ..+.+ |+|....+
T Consensus 96 rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le 175 (1187)
T COG1110 96 RGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALE 175 (1187)
T ss_pred cCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHH
Confidence 33445688999999997655433 35678999999999999999999999884222 22222 77763221
Q ss_pred ---CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEcc
Q psy11640 94 ---PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136 (552)
Q Consensus 94 ---~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE 136 (552)
..+.+|+|||.+.|.+ ..+.|.+.+|++|++|.
T Consensus 176 ~i~~gdfdIlitTs~FL~k----------~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 176 RIESGDFDILITTSQFLSK----------RFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHhcCCccEEEEeHHHHHh----------hHHHhcccCCCEEEEcc
Confidence 1468999999998864 34556667999999994
No 142
>KOG0949|consensus
Probab=99.26 E-value=1.3e-10 Score=127.25 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=67.9
Q ss_pred CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE-eccCCCChhhHHHHhhhccccCCCCCCCc
Q psy11640 351 NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ-ISSHGGSRRQEAQRLGRILRAKKGAIAEE 429 (552)
Q Consensus 351 ~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~-~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~ 429 (552)
|+.+.|.++...+|..+-=-|+. |...|||+|..++.|||.| |.+|++ -|+.--+|-.|.|+.||+||.|-+.-+
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~-g~L~VlfaT~TLsLGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lG-- 1039 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQ-GHLQVLFATETLSLGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLG-- 1039 (1330)
T ss_pred cccccccccchHHHHHHHHHhhc-CceEEEEEeeehhcccCCC-ceeEEEeccccccCchhHHhhhcccccccccccc--
Confidence 56678899999999999999997 8999999999999999999 555555 566777899999999999999876542
Q ss_pred eeEEEEE
Q psy11640 430 YNAFFYT 436 (552)
Q Consensus 430 ~~v~vy~ 436 (552)
+|.|..
T Consensus 1040 -nV~Fmg 1045 (1330)
T KOG0949|consen 1040 -NVVFMG 1045 (1330)
T ss_pred -ceEEEe
Confidence 565543
No 143
>KOG0924|consensus
Probab=99.26 E-value=3e-11 Score=127.80 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=80.6
Q ss_pred CeEEEEeccHHHH----HHHHHHc-----------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCC
Q psy11640 331 DKTIVFSDNVFAL----KHYAVKM-----------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA 395 (552)
Q Consensus 331 ~kvIVF~~~~~~~----~~l~~~L-----------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a 395 (552)
+-+|||..-.+.+ +.+...| .+..|+..+|+.-+.++++.--. +--+|||+|.++++.|.+|++
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~-~vRK~IvATNIAETSLTi~gI 642 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEG-GVRKCIVATNIAETSLTIPGI 642 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCC-CceeEEEeccchhhceeecce
Confidence 5688887654433 3344433 24468999999988888777663 677899999999999999999
Q ss_pred CEEEE--------e------c---cCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHH
Q psy11640 396 NVLIQ--------I------S---SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY 447 (552)
Q Consensus 396 ~~VI~--------~------~---~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~ 447 (552)
.+||- | | ..|-|..+.-||.||+||.++|. .|++.+.++....+
T Consensus 643 ~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~--------cYRlYTe~ay~~em 703 (1042)
T KOG0924|consen 643 RYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGT--------CYRLYTEDAYKNEM 703 (1042)
T ss_pred EEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcc--------eeeehhhhHHHhhc
Confidence 99986 1 1 12457778899999999999853 79999887655544
No 144
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=2.7e-10 Score=125.93 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=78.8
Q ss_pred cCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---CCc--eEeCCCCHHHHHH-HHHhhccCC-CeeEEEEe
Q psy11640 311 MNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---NKP--YIYGPTSQSERIQ-ILQNFKLNP-KVNTIFVS 383 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~~~--~i~G~~~~~eR~~-il~~F~~~g-~~~vLv~T 383 (552)
....|+.++..-+......|..+||.|.++...+.|+..| +++ ++....- ++.. |+. +. | .-.|.|||
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~A-G~~GaVTIAT 481 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KA-GQKGAITIAT 481 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hC-CCCCeEEEec
Confidence 3446887665544443368999999999999999999999 443 3555422 3333 333 22 3 45799999
Q ss_pred CccccccCCCCCC--------EEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 384 KVADTSFDLPEAN--------VLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 384 ~v~~~GlDlp~a~--------~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
.++|+|.||.--. +||.-. .+-|.+-..|..||+||-|..+
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTe-rheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTD-KAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecc-cCchHHHHHHHhcccccCCCCC
Confidence 9999999998543 677665 5788999999999999977643
No 145
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.25 E-value=1.5e-11 Score=117.82 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=75.2
Q ss_pred hhccCeecCCCCchhHHHHHHHH----h----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC----T----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----- 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~----~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----- 93 (552)
.+..++++|||+|||++++.++. . .+.+++|++|+.+|+.|+...++.+.......+..++|+....
T Consensus 36 ~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (203)
T cd00268 36 GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK 115 (203)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH
Confidence 34578899999999998655442 1 2347999999999999999999998765556677777765421
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
..+.+|+|+|++.+........ +...+++++|+||+|.
T Consensus 116 ~~~~~~iiv~T~~~l~~~l~~~~--------~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 116 LKRGPHIVVATPGRLLDLLERGK--------LDLSKVKYLVLDEADR 154 (203)
T ss_pred hcCCCCEEEEChHHHHHHHHcCC--------CChhhCCEEEEeChHH
Confidence 1368999999987643211110 1125689999998876
No 146
>KOG1123|consensus
Probab=99.23 E-value=4.1e-12 Score=130.10 Aligned_cols=91 Identities=62% Similarity=1.053 Sum_probs=79.7
Q ss_pred cccccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh
Q psy11640 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ 234 (552)
Q Consensus 155 ~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~ 234 (552)
.+.||.+||+ .+.|++|+.+||+|++|+||||+++|+|+|++++||+++|++|+|||..+||++..+.+.|..+.-.++
T Consensus 55 ~~~fg~~d~~-~l~Lk~Dh~srPLWv~~dG~IfLEsFsp~ykqA~DFLiaIaEPvcRP~~iHEy~lTaySLYAAVSVGL~ 133 (776)
T KOG1123|consen 55 TDEFGAKDFR-QLPLKPDHTSRPLWVAPDGHIFLETFSPLYKQAQDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLQ 133 (776)
T ss_pred ccccccchhh-hccCCCCCCCCceEEcCCCeEEeeecCHHHHhHhhhhhhhccccCChhhhhhhcchhhhhhhhhccccc
Confidence 5789999999 999999999999999999999999999999999999999999999999999999999999987655555
Q ss_pred cccee----eecceec
Q psy11640 235 SHCKL----GLTATLL 246 (552)
Q Consensus 235 ~~~~l----gLTATp~ 246 (552)
..-++ -||-||+
T Consensus 134 T~dIie~L~rlSKt~l 149 (776)
T KOG1123|consen 134 TEDIIEVLDRLSKTPL 149 (776)
T ss_pred hHHHHHHHHHhccCCC
Confidence 44332 2455554
No 147
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.21 E-value=5.8e-11 Score=109.97 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=76.4
Q ss_pred hccCeecCCCCchhHHHHHHHHh---c--CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------C-C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---V--RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------P-M 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~--~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~-~ 95 (552)
+..++++|||+|||++++.++.. . ...++|++|+++|+.|..+++..++......+..++++.... . .
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSN 94 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccccc
Confidence 44789999999999998866542 1 238999999999999999999999876556778777765421 1 4
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
.++|+|+|++.+....... .. .+ ...+++|+||+|.
T Consensus 95 ~~~ilv~T~~~l~~~~~~~-----~~-~~--~~~~~iViDE~h~ 130 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISNG-----KI-NI--SRLSLIVIDEAHH 130 (169)
T ss_dssp TSSEEEEEHHHHHHHHHTT-----SS-TG--TTESEEEEETHHH
T ss_pred cccccccCcchhhcccccc-----cc-cc--ccceeeccCcccc
Confidence 6899999999885421110 00 12 4589999998765
No 148
>KOG0926|consensus
Probab=99.12 E-value=5.2e-10 Score=120.45 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=58.9
Q ss_pred EeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE--------eccC---------CCChhhHHHHhhh
Q psy11640 355 IYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ--------ISSH---------GGSRRQEAQRLGR 417 (552)
Q Consensus 355 i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~--------~~~~---------~~s~~q~~Qr~GR 417 (552)
+++=++..++.++++.--. |.--|+|+|.|+++.|.||++..||- |++. |-|-...-||.||
T Consensus 610 LYSLLs~~~Q~RVF~~~p~-g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGR 688 (1172)
T KOG0926|consen 610 LYSLLSTEKQMRVFDEVPK-GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGR 688 (1172)
T ss_pred hhhhcCHHHhhhhccCCCC-CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccc
Confidence 4555677777777776664 56668999999999999999999986 3321 2355667899999
Q ss_pred ccccCCCCCCCceeEEEEEEecC
Q psy11640 418 ILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 418 i~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
+||.|+|. .|+|.+.
T Consensus 689 AGRtgpGH--------cYRLYSS 703 (1172)
T KOG0926|consen 689 AGRTGPGH--------CYRLYSS 703 (1172)
T ss_pred cCCCCCCc--------eeehhhh
Confidence 99999964 6888776
No 149
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.11 E-value=2.4e-10 Score=107.62 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=72.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCC-CcEEEEecCccc-----CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADD-SMICRFTSEAKD-----KPMG 96 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~-~~I~~~~g~~~~-----~~~~ 96 (552)
+..++.+|||+|||.+++.++... ..++||++|+..++.||..++..++.... ..+..+.+.... ....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESG 104 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcC
Confidence 678899999999999777666532 36799999999999999999998875332 334445544311 1123
Q ss_pred C-cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 97 C-GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 97 ~-~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
. +|+++|++.+....... .+....++++|+||+|.
T Consensus 105 ~~~v~~~t~~~l~~~~~~~--------~~~~~~~~~iIiDE~h~ 140 (201)
T smart00487 105 KTDILVTTPGRLLDLLEND--------LLELSNVDLVILDEAHR 140 (201)
T ss_pred CCCEEEeChHHHHHHHHcC--------CcCHhHCCEEEEECHHH
Confidence 3 89999999875421111 02235788999998776
No 150
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.11 E-value=3.1e-09 Score=121.61 Aligned_cols=71 Identities=7% Similarity=-0.010 Sum_probs=53.9
Q ss_pred hcCCeEEEEeccHHHHHHHHHHcC---C-ceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCC--CCEEEEe
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKMN---K-PYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE--ANVLIQI 401 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L~---~-~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~--a~~VI~~ 401 (552)
..+++++|+..+...++.+...|. . ....|... .|..++++|+. ++-.||++|...-||+|+|. +.+||+.
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~--~~~~l~~~F~~-~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNG--TAYNIKKRFDR-GEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCc--cHHHHHHHHHc-CCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 467799999999999998887773 2 24556443 35679999996 66789999999999999984 4555553
No 151
>KOG0923|consensus
Probab=99.10 E-value=5.8e-10 Score=118.03 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=77.5
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc-------C-------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCC
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM-------N-------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L-------~-------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp 393 (552)
++.+-+|||---.+.++...+.| | +..|+..+|++.+..|++---. |--+|++||.++++.|.|+
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~-gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPP-GARKVVLATNIAETSLTID 549 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCC-CceeEEEeecchhhceeec
Confidence 35567899987666655554444 2 3458999999998888776653 5678999999999999999
Q ss_pred CCCEEEE--------ec---------cCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEec
Q psy11640 394 EANVLIQ--------IS---------SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS 439 (552)
Q Consensus 394 ~a~~VI~--------~~---------~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs 439 (552)
++..||- |. ..|-|.....||.||+||.|+|+ .|+|.+
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK--------CfRLYt 604 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK--------CFRLYT 604 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc--------eEEeec
Confidence 9999985 10 12345667899999999999987 466665
No 152
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=1.5e-08 Score=112.75 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHH---HHHHHHhhhCCCCCcEEEEecCcccC----CCCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQ---WKHQFKLWSTADDSMICRFTSEAKDK----PMGCG 98 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Q---w~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~ 98 (552)
.+++-|.||-|||++|..++. ..++.+-||+++..|+.. |...+-+|+++ .|++..++.... .-.++
T Consensus 100 G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL---tvg~i~~~~~~~err~aY~~D 176 (939)
T PRK12902 100 GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGL---SVGLIQQDMSPEERKKNYACD 176 (939)
T ss_pred CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC---eEEEECCCCChHHHHHhcCCC
Confidence 467789999999999887665 357889999999999965 77777788875 566665543221 14689
Q ss_pred EEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 99 ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
|+.+|...+.....|..-.... +..-...+.+.|+||+..
T Consensus 177 ItYgTn~e~gFDYLRDnm~~~~-~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 177 ITYATNSELGFDYLRDNMATDI-SEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred eEEecCCcccccchhhhhcccc-cccccCccceEEEecccc
Confidence 9999999886543332111000 111236778888888654
No 153
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.02 E-value=1.9e-08 Score=112.10 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=70.6
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHH---HHHHHHhhhCCCCCcEEEEecCcccC----CCCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQ---WKHQFKLWSTADDSMICRFTSEAKDK----PMGCG 98 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Q---w~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~ 98 (552)
..++-|.||-|||+++..+++ ..++.+-||+++..|+.+ |...+-+|+++ .+++..++.... .-.++
T Consensus 91 G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL---svg~i~~~~~~~err~aY~~D 167 (870)
T CHL00122 91 GKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL---TVGLIQEGMSSEERKKNYLKD 167 (870)
T ss_pred CccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCC---ceeeeCCCCChHHHHHhcCCC
Confidence 467779999999999877664 357889999999999976 66666678775 456655543221 13579
Q ss_pred EEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 99 ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
|+-+|...+.....|..-.-.. +..-...+.+.|+||+.-
T Consensus 168 ItYgTn~e~gFDyLRDnm~~~~-~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 168 ITYVTNSELGFDYLRDNMALSL-SDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred CEecCCccccccchhhccCcCh-HHhhccccceeeeecchh
Confidence 9999988776443332110000 111236788889998644
No 154
>KOG0920|consensus
Probab=99.00 E-value=9.3e-09 Score=115.43 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHcC------------CceEeCCCCHHHHHHHHHhhccCCCeeE
Q psy11640 314 NKYRATQYLIAYHER--RGDKTIVFSDNVFALKHYAVKMN------------KPYIYGPTSQSERIQILQNFKLNPKVNT 379 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~--~g~kvIVF~~~~~~~~~l~~~L~------------~~~i~G~~~~~eR~~il~~F~~~g~~~v 379 (552)
-...++..++.+... ..+.+|||-+....+..+...|. +..+|+.++..|++.+...--. |--++
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~-g~RKI 473 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPK-GTRKI 473 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCC-Ccchh
Confidence 345667777776532 34589999999888888777771 2357999999999999888774 67889
Q ss_pred EEEeCccccccCCCCCCEEEE--------ecc---------CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 380 IFVSKVADTSFDLPEANVLIQ--------ISS---------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 380 Lv~T~v~~~GlDlp~a~~VI~--------~~~---------~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+++|.+++.+|.|+++-.||- ||. .|-|.....||.||+||...| ..|.|.+..
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G--------~cy~L~~~~ 544 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPG--------ICYHLYTRS 544 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCC--------eeEEeechh
Confidence 999999999999999888886 221 145677889999999999875 368887763
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.98 E-value=4.4e-08 Score=107.83 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----CC-ceEeCCCCHHHHHHHHHhhccC---CCeeEEEEeCccccc
Q psy11640 318 ATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----NK-PYIYGPTSQSERIQILQNFKLN---PKVNTIFVSKVADTS 389 (552)
Q Consensus 318 ~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~~-~~i~G~~~~~eR~~il~~F~~~---g~~~vLv~T~v~~~G 389 (552)
+...+.+.....+++++|.+.+...++.++..| .. ..+.|+.+ .|..++++|+.. +.-.|||+|..+-||
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 334444444445667777666667777766666 33 34667554 567899999863 457899999999999
Q ss_pred cCC----------CCCCEEEEec
Q psy11640 390 FDL----------PEANVLIQIS 402 (552)
Q Consensus 390 lDl----------p~a~~VI~~~ 402 (552)
||+ ..+++||+..
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~k 558 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITC 558 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEe
Confidence 999 3588898854
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.94 E-value=8.9e-08 Score=106.61 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=68.9
Q ss_pred CCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEE
Q psy11640 35 RPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILV 101 (552)
Q Consensus 35 pTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvI 101 (552)
.+|+|||.+.+.++. ..++.+|||+|...|+.|+.+.|+..++ ...|.++++..... .....|+|
T Consensus 168 ~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 369999999888775 4578999999999999999999998884 34688898875431 14578999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCC
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGV 138 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h 138 (552)
+|.+.+- +.-.+.++||+||=|
T Consensus 246 GtRSAvF---------------aP~~~LgLIIvdEEh 267 (665)
T PRK14873 246 GTRSAVF---------------APVEDLGLVAIWDDG 267 (665)
T ss_pred EcceeEE---------------eccCCCCEEEEEcCC
Confidence 9999662 223789999999743
No 157
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.92 E-value=7.4e-08 Score=109.18 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=61.2
Q ss_pred CeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCC---CceeEEEEEEecCCchhhHHHHHHH
Q psy11640 376 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIA---EEYNAFFYTLVSQDTMEMSYSRKRQ 452 (552)
Q Consensus 376 ~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~---~~~~v~vy~lvs~~t~e~~~~~~r~ 452 (552)
.+++||+-.++.||+|.|.+-+++.+. ..+|...-.|-+||++|..-+..+ .+..+ ..+.+...+.+.+... -|
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~-~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~-LQ 577 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLR-SSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASK-LV 577 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEec-cCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHH-HH
Confidence 688999999999999999999999999 589999999999999998764332 23344 5666666665555444 44
Q ss_pred HHH-HHcCCCe
Q psy11640 453 RFL-INQGYSY 462 (552)
Q Consensus 453 ~~l-~~~g~~~ 462 (552)
.-+ .+.|..+
T Consensus 578 ~EI~~~~~~~~ 588 (986)
T PRK15483 578 GEINSDSKVQL 588 (986)
T ss_pred HHHHhhccccc
Confidence 444 3335444
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=8.7e-08 Score=107.92 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=76.9
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---CCc--eEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---NKP--YIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~~~--~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+.++.+-+......|..|||-|.+++..+.|+++| +++ ++....-..|- +|+.+=-. .-.|.|||.++
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA~AG~--~GaVTIATNMA 686 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVAEAGQ--PGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHHhcCC--CCcEEEeccCc
Confidence 346887665544444469999999999999999999999 333 34444333333 33433221 34789999999
Q ss_pred ccccCCC--------CCCEEEEeccCCCChhhHHHHhhhccccCCCC
Q psy11640 387 DTSFDLP--------EANVLIQISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 387 ~~GlDlp--------~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
|+|.||. +-=+||--. ..-|++-.-|-.||+||-|..+
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTe-rheSrRID~QLrGRaGRQGDPG 732 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTE-RHESRRVDRQLRGRAGRQGDPG 732 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEcc-CCCcHHHHHHHhcccccCCCCC
Confidence 9999997 222444444 5788999999999999977643
No 159
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.91 E-value=4.1e-09 Score=93.25 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=58.8
Q ss_pred hhhccCeecCCCCchhHHHHHHH----HhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCc-ccCCCCCcEE
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTAC----CTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEA-KDKPMGCGIL 100 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i----~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~-~~~~~~~~Iv 100 (552)
|.+...+-+.||+|||...+.-+ ...+.++|||.||++++....+.++. ..+..-+.-. .....+..|.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~------~~~~~~t~~~~~~~~g~~~i~ 76 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG------LPVRFHTNARMRTHFGSSIID 76 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT------SSEEEESTTSS----SSSSEE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc------CCcccCceeeeccccCCCccc
Confidence 34456777999999997555433 24678999999999998776666652 1222222111 1123457789
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
++||..+.+. .++-....+|++||+||||=
T Consensus 77 vMc~at~~~~---------~~~p~~~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 77 VMCHATYGHF---------LLNPCRLKNYDVIIMDECHF 106 (148)
T ss_dssp EEEHHHHHHH---------HHTSSCTTS-SEEEECTTT-
T ss_pred ccccHHHHHH---------hcCcccccCccEEEEecccc
Confidence 9999987542 22333347899999997763
No 160
>KOG0925|consensus
Probab=98.64 E-value=2.6e-07 Score=95.23 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=63.6
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----------C---CceEeCCCCHHHHHHHHHhhcc--C--CCeeEEEEeCcccccc
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----------N---KPYIYGPTSQSERIQILQNFKL--N--PKVNTIFVSKVADTSF 390 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----------~---~~~i~G~~~~~eR~~il~~F~~--~--g~~~vLv~T~v~~~Gl 390 (552)
..+-+|||-...+.++.-++.+ | +.-++ +.+.++|++--.. + ..-+|+|+|.+++..+
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsl 327 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSL 327 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheee
Confidence 3456899998888777766655 1 22233 4555555443321 1 2567999999999999
Q ss_pred CCCCCCEEEE--------ec------c---CCCChhhHHHHhhhccccCCCC
Q psy11640 391 DLPEANVLIQ--------IS------S---HGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 391 Dlp~a~~VI~--------~~------~---~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
.++++-.||- |. + .|-|..+..||.||+||..+||
T Consensus 328 tidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGk 379 (699)
T KOG0925|consen 328 TIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 379 (699)
T ss_pred eeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCc
Confidence 9998887774 10 0 1446678899999999999987
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.61 E-value=2.2e-06 Score=95.02 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCC
Q psy11640 320 QYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394 (552)
Q Consensus 320 ~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~ 394 (552)
..|+... ..|.++-|||.+...++.++++. .+..++|..+.. ++ +. -++++|++=|++...|+++-.
T Consensus 273 ~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~---W~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 273 SELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES---WKKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc---ccceeEEEEeceEEEEeccch
Confidence 3344433 58899999999999999988876 345666665544 22 22 357999999999999999965
Q ss_pred C--CEEEEe--c-cCCCChhhHHHHhhhccccCCCCCCCceeEEEEE
Q psy11640 395 A--NVLIQI--S-SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYT 436 (552)
Q Consensus 395 a--~~VI~~--~-~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~ 436 (552)
. +-|..| . ...-+.....|++||+-....+ .+++|.
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~------ei~v~~ 385 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN------EIYVYI 385 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC------eEEEEE
Confidence 4 233333 1 1123445679999999777663 366663
No 162
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.57 E-value=2.2e-05 Score=89.36 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=65.0
Q ss_pred EEEeccHHHHHHHHHHc-------C----CceEeCCCCHHHHHHHHHhh----------------------ccC---CCe
Q psy11640 334 IVFSDNVFALKHYAVKM-------N----KPYIYGPTSQSERIQILQNF----------------------KLN---PKV 377 (552)
Q Consensus 334 IVF~~~~~~~~~l~~~L-------~----~~~i~G~~~~~eR~~il~~F----------------------~~~---g~~ 377 (552)
+|-..++..+-.++..| + +..+|+..+...|..+-+.. +++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 45556666666666555 2 45678888766665543321 111 256
Q ss_pred eEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEE
Q psy11640 378 NTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYT 436 (552)
Q Consensus 378 ~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~ 436 (552)
.|+|+|++.+.|+|+. .+.+|. .+.+....+|+.||+.|.++... +..|++||.
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~---~~~~~~sliQ~aGR~~R~~~~~~-~~~N~~i~~ 893 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA---DPSSMRSIIQLAGRVNRHRLEKV-QQPNIVILQ 893 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee---ccCcHHHHHHHhhcccccccCCC-CCCcEEEeH
Confidence 7888899999999996 676654 24457779999999999887543 455666663
No 163
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=2.9e-08 Score=110.38 Aligned_cols=74 Identities=61% Similarity=1.101 Sum_probs=66.5
Q ss_pred hhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhcc
Q psy11640 163 YRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236 (552)
Q Consensus 163 ~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~ 236 (552)
|...+.|++||.+||+|+.|+|+|+++.++|.+.++.||+..+|+|++||+++||+...|.+.|..+...+.+.
T Consensus 2 ~~~~~~lk~dh~~~pl~v~~d~~i~lE~~~p~~~~a~~fl~~~aEp~~rp~~iHeY~lT~~sl~~A~s~g~~~~ 75 (732)
T TIGR00603 2 YSKQLELKPDHGSRPLWVAPDGHIFLESFSPLYKQAQDFLVAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETE 75 (732)
T ss_pred ccccCCCCCCCCCCCEEEcCCCeEEEEeCCccHHHHHHHHHHhcccccChhheEEEeccHHHHHHHHHcCCCHH
Confidence 33458899999999999999999999999999999999999999999999999999999999998765544433
No 164
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.56 E-value=1.9e-06 Score=97.75 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=44.2
Q ss_pred EEeCccccccCCCC----------------------C----------CEEEEeccCCCChhhHHH--HhhhccccCCCCC
Q psy11640 381 FVSKVADTSFDLPE----------------------A----------NVLIQISSHGGSRRQEAQ--RLGRILRAKKGAI 426 (552)
Q Consensus 381 v~T~v~~~GlDlp~----------------------a----------~~VI~~~~~~~s~~q~~Q--r~GRi~R~~~~k~ 426 (552)
|+|.++.+|+|+|. + +.||+|+ |.-+-..-+| |.||.+|.
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYE-P~~sfIR~IEvyra~r~~r~----- 504 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYE-PDISFIRQLEVYKASRPLRP----- 504 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEEC-CChHHHHHHHHHHccCCCCC-----
Confidence 67888899999997 5 8999999 5666666666 66766663
Q ss_pred CCceeEEEEEEecCCchhhHHH
Q psy11640 427 AEEYNAFFYTLVSQDTMEMSYS 448 (552)
Q Consensus 427 ~~~~~v~vy~lvs~~t~e~~~~ 448 (552)
+.||-|+..+|.||.++
T Consensus 505 -----~rVyfL~y~~S~EEq~y 521 (814)
T TIGR00596 505 -----LRVYFLYYGGSIEEQRY 521 (814)
T ss_pred -----cEEEEEEECCcHHHHHH
Confidence 45898999999988643
No 165
>KOG0951|consensus
Probab=98.31 E-value=0.00011 Score=83.95 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=66.0
Q ss_pred cCeecCCCCchhHHHHHHHHhc--CCcEEEEecCchhHHH----HHHHHHhhhCCCCCcEEEEecCcccC---CCCCcEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV--RKRALVLCNSGVSVEQ----WKHQFKLWSTADDSMICRFTSEAKDK---PMGCGIL 100 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~--~~~~LIl~Pt~~Lv~Q----w~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~Iv 100 (552)
.++-+|+|+|||.+|-.++.+. ..+++.++|..+.+.- |...|... ....|..++|+..-. ....+|+
T Consensus 1162 v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~---~G~~~~~l~ge~s~~lkl~~~~~vi 1238 (1674)
T KOG0951|consen 1162 VLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL---LGLRIVKLTGETSLDLKLLQKGQVI 1238 (1674)
T ss_pred EEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccc---cCceEEecCCccccchHHhhhcceE
Confidence 4556999999999998777653 4689999998877654 44444433 345777788876322 1457899
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
|+|+...... ..+ +..++.|+||.|-
T Consensus 1239 i~tpe~~d~l-----------q~i--Q~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1239 ISTPEQWDLL-----------QSI--QQVDLFIVDELHL 1264 (1674)
T ss_pred EechhHHHHH-----------hhh--hhcceEeeehhhh
Confidence 9999976332 233 6789999998765
No 166
>KOG4150|consensus
Probab=98.21 E-value=7.5e-06 Score=85.99 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-------------CCceEeCCCCHHHHHHHHHhhccCCCeeEEE
Q psy11640 315 KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-------------NKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381 (552)
Q Consensus 315 K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-------------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv 381 (552)
+..-...|+......+-++|-||..+..++.+-... .+..+.|+-+.++|..|-...=. |++.-+|
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~giI 588 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLCGII 588 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-CeeeEEE
Confidence 444444555555567889999999988877653322 24457899999999999877764 8999999
Q ss_pred EeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHH
Q psy11640 382 VSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455 (552)
Q Consensus 382 ~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l 455 (552)
+|.+++.||||-..|.|+++.. |.|...+.|..||+||..... ..+| ++....++.+|...-...+
T Consensus 589 aTNALELGIDIG~LDAVl~~GF-P~S~aNl~QQ~GRAGRRNk~S------Lavy-va~~~PVDQ~Y~~HP~~l~ 654 (1034)
T KOG4150|consen 589 ATNALELGIDIGHLDAVLHLGF-PGSIANLWQQAGRAGRRNKPS------LAVY-VAFLGPVDQYYMSHPDKLF 654 (1034)
T ss_pred ecchhhhccccccceeEEEccC-chhHHHHHHHhccccccCCCc------eEEE-EEeccchhhHhhcCcHHHh
Confidence 9999999999999999999995 999999999999999976643 2233 5566778887776554443
No 167
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.17 E-value=0.00011 Score=81.28 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=47.7
Q ss_pred HhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCC
Q psy11640 369 QNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAI 426 (552)
Q Consensus 369 ~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~ 426 (552)
=.|.+ ..++||+--++-||+|-|.+=+++-+. +.+|...=.|-+||++|..-...
T Consensus 478 LSFd~--plRFIFS~waLrEGWDNPNVFtIckL~-~S~SeiSK~QeVGRGLRLaVNe~ 532 (985)
T COG3587 478 LSFDE--PLRFIFSKWALREGWDNPNVFTICKLR-SSGSEISKLQEVGRGLRLAVNEN 532 (985)
T ss_pred cccCC--cceeeeehhHHhhcCCCCCeeEEEEec-CCCcchHHHHHhccceeeeeccc
Confidence 35763 589999999999999999999999999 58999999999999999876554
No 168
>KOG0298|consensus
Probab=98.14 E-value=2.6e-06 Score=96.87 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=90.7
Q ss_pred CCeEEEEeccHHHHHHHHHHc---CC-ceEeCCCCHHHHHHHHHhhccCCCeeEEEE-eCccccccCCCCCCEEEEeccC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM---NK-PYIYGPTSQSERIQILQNFKLNPKVNTIFV-SKVADTSFDLPEANVLIQISSH 404 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L---~~-~~i~G~~~~~eR~~il~~F~~~g~~~vLv~-T~v~~~GlDlp~a~~VI~~~~~ 404 (552)
-.++|||++....++.+...+ ++ ....|++. +-...+..|+. +.||.. ++.++-|+|+-+|.+|++.+ |
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~--d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~e-P 1294 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE--DFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLVE-P 1294 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc--chhhhhhhccc---ceEEEEEeccCcccccHHhhhhhheec-c
Confidence 369999999999888887766 22 23455533 45677888883 777666 79999999999999999999 6
Q ss_pred CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHH
Q psy11640 405 GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449 (552)
Q Consensus 405 ~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~ 449 (552)
.-|+....|++||++|.||.+ +++||+++-.+|+|+.|..
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~-----pT~V~~fiv~~TvEe~Il~ 1334 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKR-----PTFVHRFIVNETVEENILS 1334 (1394)
T ss_pred ccCchHHHhhhhhhhhccccc-----chhhhhhhhccchHHHHHH
Confidence 899999999999999999976 6999999999999998865
No 169
>KOG0298|consensus
Probab=98.03 E-value=4.5e-06 Score=95.07 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCCchhHHHHHHHHh---------------------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc-
Q psy11640 35 RPSAGKSLVGVTACCT---------------------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD- 92 (552)
Q Consensus 35 pTG~GKTl~ai~~i~~---------------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~- 92 (552)
-.|.|||..-+..... .-+.+|||||.. +..||..|+.+.... ...|..|.|-.+.
T Consensus 382 e~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~-~lKv~~Y~Girk~~ 459 (1394)
T KOG0298|consen 382 EMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISS-LLKVLLYFGIRKTF 459 (1394)
T ss_pred hhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccc-cceEEEEechhhhc
Confidence 3578999876554321 124699999964 889999999998853 2477778776543
Q ss_pred -----CCCCCcEEEEccccccc
Q psy11640 93 -----KPMGCGILVTTYSMISH 109 (552)
Q Consensus 93 -----~~~~~~IvItTy~~l~~ 109 (552)
....+|||+|||+.|..
T Consensus 460 ~~~~~el~~yDIVlTtYdiLr~ 481 (1394)
T KOG0298|consen 460 WLSPFELLQYDIVLTTYDILRN 481 (1394)
T ss_pred ccCchhhhccCEEEeehHHHHh
Confidence 12568999999999854
No 170
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=0.00013 Score=77.57 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=59.5
Q ss_pred ecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHH-----hhh-----CCCCC--cEEEEecCcccCCCC
Q psy11640 33 KKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFK-----LWS-----TADDS--MICRFTSEAKDKPMG 96 (552)
Q Consensus 33 vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~-----~~~-----~~~~~--~I~~~~g~~~~~~~~ 96 (552)
-|+||+|||++..++|.. ..+..|+.|....+++-...-|- +|+ .+.+. .|..+..-+ +..+.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs-ehnd~ 81 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS-EHNDA 81 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC-ccCCc
Confidence 489999999998777753 24579999998888775444332 111 00111 122111111 11134
Q ss_pred CcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccc
Q psy11640 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAA 142 (552)
Q Consensus 97 ~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~ 142 (552)
-.|+.||.|.|....-+..+..-..+.|.... -+++-|||||..+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~k-lvfl~deahhln~ 126 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQK-LVFLADEAHHLNT 126 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCc-eEEEechhhhhhh
Confidence 57899999988544222222222233342222 2467899999544
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.92 E-value=8.3e-05 Score=83.17 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---CCce--EeCCCCHHHHHHHHHhhccCCCeeEEEEeCccc
Q psy11640 313 PNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---NKPY--IYGPTSQSERIQILQNFKLNPKVNTIFVSKVAD 387 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~~~~--i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~ 387 (552)
..|+.++..-+......|.++||-+.+++..+.+...| +++. +...-. +|..-+-.+.- -.--|-|+|.++|
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG-~~gaVTiATNMAG 488 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAG-QPGAVTIATNMAG 488 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcC-CCCcccccccccc
Confidence 35777654444444468999999999999999999988 4432 444433 44444434431 1335888999999
Q ss_pred cccCCCCCCE-----------EEEeccCCCChhhHHHHhhhccccCC
Q psy11640 388 TSFDLPEANV-----------LIQISSHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 388 ~GlDlp~a~~-----------VI~~~~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
+|-||.--.. ||--. .--|++-.-|-.||+||-|.
T Consensus 489 RGTDIkLg~~~~~V~~lGGL~VIgTE-RhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 489 RGTDIKLGGNPEFVMELGGLHVIGTE-RHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred CCcccccCCCHHHHHHhCCcEEEecc-cchhhHHHHHhhcccccCCC
Confidence 9999864443 22222 23456667799999999665
No 172
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.90 E-value=0.00013 Score=72.73 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=71.3
Q ss_pred cCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC--CCCCcEEEEccccc
Q psy11640 34 KRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PMGCGILVTTYSMI 107 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~--~~~~~IvItTy~~l 107 (552)
=-||.||..+...+|.. -++++|+|..+..|...-.+.+...... ...|.-+..-.... ....+|+.+||+.|
T Consensus 69 DGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L 147 (303)
T PF13872_consen 69 DGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYGDIIRLKEGVLFSTYSTL 147 (303)
T ss_pred cCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccCcCCCCCCCccchhHHHH
Confidence 36899999887777653 2457999999999998877777755432 22222222211111 13568999999998
Q ss_pred cccc----ccchhHHHHHHHHhcCcccEEEEccCCcccc
Q psy11640 108 SHTQ----KRSWEADQTMQWLQNQEWGIMLLDDGVPVAA 142 (552)
Q Consensus 108 ~~~~----~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~ 142 (552)
.... +..-..+++.+|+....-++||+||||.++.
T Consensus 148 ~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 148 ISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred HhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCC
Confidence 6542 2223456677888644456999999999765
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.64 E-value=0.00034 Score=64.90 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=64.9
Q ss_pred hcCCeEEEEeccHHHHHHHHHHcC-------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC--ccccccCCCC--CC
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKMN-------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK--VADTSFDLPE--AN 396 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~--v~~~GlDlp~--a~ 396 (552)
..++++|||+++-..++.+...+. +..+.- +..++..+++.|+. ++--+|+++. ...||||+|+ +.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~-~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKR-GEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCC-SSSEEEEEETTSCCGSSS--ECESEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHh-ccCeEEEEEecccEEEeecCCCchhh
Confidence 357899999999999999998883 233333 35588999999996 6777888887 9999999996 66
Q ss_pred EEEEeccC---CCChh--------------------------hHHHHhhhccccCCC
Q psy11640 397 VLIQISSH---GGSRR--------------------------QEAQRLGRILRAKKG 424 (552)
Q Consensus 397 ~VI~~~~~---~~s~~--------------------------q~~Qr~GRi~R~~~~ 424 (552)
+||+..-| +.++. ...|.+||+.|...+
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D 140 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD 140 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC
Confidence 77775422 22221 237899999997764
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.52 E-value=0.00015 Score=70.23 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=34.2
Q ss_pred cCeecCCCCchhHHHHHHHHh-----------cCCcEEEEecCchhHHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT-----------VRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~-----------~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.++.+|+|+|||-+...++.. .+.++||++|+...+++..+.+.+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 678899999999655444432 346899999999999999888887
No 175
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.41 E-value=0.0016 Score=64.83 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=65.6
Q ss_pred HHHHhhccCCCeeEEEEeCccccccCCCCC--------CEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEE
Q psy11640 366 QILQNFKLNPKVNTIFVSKVADTSFDLPEA--------NVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTL 437 (552)
Q Consensus 366 ~il~~F~~~g~~~vLv~T~v~~~GlDlp~a--------~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~l 437 (552)
...+.|++ |+..|+|.|.++++||.+.+- .+-|.+. +|||....+|..||++|.+|-.. -.|.+
T Consensus 52 ~e~~~F~~-g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le-~pwsad~aiQ~~GR~hRsnQ~~~------P~y~~ 123 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLE-LPWSADKAIQQFGRTHRSNQVSA------PEYRF 123 (278)
T ss_pred HHHHHHhC-CCceEEEEecccccccchhccccCCCCCceEEEEee-CCCCHHHHHHHhccccccccccC------CEEEE
Confidence 45789995 899999999999999999853 2445567 69999999999999999999653 35555
Q ss_pred ecCC-chhhHHHHHHHHHHHHcCC
Q psy11640 438 VSQD-TMEMSYSRKRQRFLINQGY 460 (552)
Q Consensus 438 vs~~-t~e~~~~~~r~~~l~~~g~ 460 (552)
+..+ .-|..++..--+.|...|.
T Consensus 124 l~t~~~gE~Rfas~va~rL~sLgA 147 (278)
T PF13871_consen 124 LVTDLPGERRFASTVARRLESLGA 147 (278)
T ss_pred eecCCHHHHHHHHHHHHHHhhccc
Confidence 5554 6677776655555655553
No 176
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.36 E-value=0.00036 Score=81.78 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=58.2
Q ss_pred HHHHHhhcCCeEEEEeccHHHHHHHHHHcC-------CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCC
Q psy11640 322 LIAYHERRGDKTIVFSDNVFALKHYAVKMN-------KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394 (552)
Q Consensus 322 Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~-------~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~ 394 (552)
|.+.....++++|||..+...++.+...|. ...+.=+++...|..+++.|+. ++-.||++|....||||+|+
T Consensus 744 i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~iLlG~~sFwEGVD~pg 822 (928)
T PRK08074 744 IAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKAILLGTSSFWEGIDIPG 822 (928)
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCeEEEecCcccCccccCC
Confidence 333333466789999999999988887762 2233322333468999999996 56679999999999999998
Q ss_pred C--CEEEEec
Q psy11640 395 A--NVLIQIS 402 (552)
Q Consensus 395 a--~~VI~~~ 402 (552)
- ++||+..
T Consensus 823 ~~l~~viI~k 832 (928)
T PRK08074 823 DELSCLVIVR 832 (928)
T ss_pred CceEEEEEec
Confidence 6 6777754
No 177
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.23 E-value=0.011 Score=62.65 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=78.9
Q ss_pred cCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC--ccccccCCCCCCEEEEe
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK--VADTSFDLPEANVLIQI 401 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~--v~~~GlDlp~a~~VI~~ 401 (552)
...++|||+++=..--.|...| + ...++--++..+-.+.-..|.+ |+.++|+.|. -.=.=..|.++..||+|
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 4569999999866655566666 3 3457888999999999999996 8999999992 23345778889999999
Q ss_pred ccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 402 SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 402 ~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
. +|.+|.-|...+.-+..... ...+...+.+..|-+.
T Consensus 378 ~-~P~~p~fY~El~n~~~~~~~-~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 378 G-PPENPQFYSELLNMLDESSG-GEVDAADATVTVLYSK 414 (442)
T ss_pred C-CCCChhHHHHHHhhhccccc-ccccccCceEEEEecH
Confidence 9 79999988888866655443 1112223455555554
No 178
>PF13245 AAA_19: Part of AAA domain
Probab=97.14 E-value=0.0007 Score=53.98 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=33.7
Q ss_pred cCeecCCCCchhHHHHHHHHh---c----CCcEEEEecCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---V----RKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~----~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
.++.+|+|+|||.+++..+.. . ++++||++|+...+++..+.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 345799999999776665542 2 678999999999998777776
No 179
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.13 E-value=0.00048 Score=71.90 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=37.4
Q ss_pred cCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.++.+.+|+|||++|+.++... +..++++|++..|+..-+..+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 3566899999999999988765 56799999999998877777764
No 180
>KOG1802|consensus
Probab=96.98 E-value=0.0021 Score=69.40 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=39.6
Q ss_pred hccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.=.++-+|+|+|||++..+++. ....|+||++|+...|+|..+.+.+
T Consensus 426 plsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 426 PLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 3457889999999998777665 4578999999999999999998875
No 181
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.88 E-value=0.005 Score=69.82 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=69.7
Q ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHcCC------ceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCC--
Q psy11640 324 AYHERRGDKTIVFSDNVFALKHYAVKMNK------PYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA-- 395 (552)
Q Consensus 324 ~~~~~~g~kvIVF~~~~~~~~~l~~~L~~------~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a-- 395 (552)
......++++|||+.+-..++.+...+.- ....|..+ +..+++.|+..++.-++|++..+.||+|+|+-
T Consensus 473 ~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l 549 (654)
T COG1199 473 EILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDAL 549 (654)
T ss_pred HHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCe
Confidence 33334566999999999999999998831 23344444 55999999864444688899999999999987
Q ss_pred CEEEEeccC---CCCh--------------------------hhHHHHhhhccccCCCC
Q psy11640 396 NVLIQISSH---GGSR--------------------------RQEAQRLGRILRAKKGA 425 (552)
Q Consensus 396 ~~VI~~~~~---~~s~--------------------------~q~~Qr~GRi~R~~~~k 425 (552)
.+||+..-| +.+| ....|.+||+.|...++
T Consensus 550 ~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~ 608 (654)
T COG1199 550 RLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDR 608 (654)
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCc
Confidence 556664311 1121 22489999999976654
No 182
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.70 E-value=0.014 Score=68.72 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=34.2
Q ss_pred hccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKH 70 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~ 70 (552)
+..++-+|||+|||+..+.++. ..+++++|-++|..|-+|...
T Consensus 277 ~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 277 EHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHH
Confidence 4455679999999999876654 246899999999999999543
No 183
>KOG1513|consensus
Probab=96.65 E-value=0.011 Score=65.30 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=65.1
Q ss_pred CCCCchhHHHHHHHHh--cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEe--------cCcccCCCCCcEEEEcc
Q psy11640 35 RPSAGKSLVGVTACCT--VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFT--------SEAKDKPMGCGILVTTY 104 (552)
Q Consensus 35 pTG~GKTl~ai~~i~~--~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~--------g~~~~~~~~~~IvItTy 104 (552)
..|-|.|+.+|.+=.. -++++|++.-+..|-..-.+.+..... +...|..+. +.... .-...|+.+||
T Consensus 299 GVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~en~-n~krGViFaTY 376 (1300)
T KOG1513|consen 299 GVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKENT-NTKRGVIFATY 376 (1300)
T ss_pred ccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC-CCccceehhhcccccccccccC-CccceeEEEee
Confidence 3455667766654433 356899999999998777777765442 222222111 11111 12368999999
Q ss_pred ccccccc-----ccchhHHHHHHHHhcCcccEEEEccCCcccc
Q psy11640 105 SMISHTQ-----KRSWEADQTMQWLQNQEWGIMLLDDGVPVAA 142 (552)
Q Consensus 105 ~~l~~~~-----~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~ 142 (552)
..|.... +..-...++.+|+-..--++||+||||++..
T Consensus 377 taLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKN 419 (1300)
T KOG1513|consen 377 TALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKN 419 (1300)
T ss_pred HhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcc
Confidence 9885321 1122345677787655557999999999765
No 184
>KOG0952|consensus
Probab=96.64 E-value=0.0028 Score=71.82 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=72.6
Q ss_pred cCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC---CCCcEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP---MGCGILV 101 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~---~~~~IvI 101 (552)
-.+-+|||+|||+.|-.++.. ...++++++|-..|+.--.+...+....+...+...+|+..... ..++++|
T Consensus 946 ~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~~~~i 1025 (1230)
T KOG0952|consen 946 FLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREADIVI 1025 (1230)
T ss_pred hhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecCceEE
Confidence 345689999999999877763 35789999999988865443333323334456777777764322 5689999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
||++.... ..|||+..+ ++ .++.++|+||.|-.
T Consensus 1026 ttpek~dg-i~Rsw~~r~---~v--~~v~~iv~de~hll 1058 (1230)
T KOG0952|consen 1026 TTPEKWDG-ISRSWQTRK---YV--QSVSLIVLDEIHLL 1058 (1230)
T ss_pred cccccccC-ccccccchh---hh--ccccceeecccccc
Confidence 99997643 245665543 34 67899999997653
No 185
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.40 E-value=0.042 Score=62.63 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=52.7
Q ss_pred cCCeEEEEeccHHHHHHHHHHc----CCc-eEeCCCCHHHHHHHHHhhcc---CCCeeEEEEeCccccccCCCC--CCEE
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM----NKP-YIYGPTSQSERIQILQNFKL---NPKVNTIFVSKVADTSFDLPE--ANVL 398 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L----~~~-~i~G~~~~~eR~~il~~F~~---~g~~~vLv~T~v~~~GlDlp~--a~~V 398 (552)
.+..+|||..+...++.+...| +.. .+.|. ..|..+++.|++ +++-.||++|....||||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 4556899888888888887776 233 45564 257889987863 145569999999999999997 6788
Q ss_pred EEec
Q psy11640 399 IQIS 402 (552)
Q Consensus 399 I~~~ 402 (552)
|+..
T Consensus 610 II~k 613 (697)
T PRK11747 610 IITK 613 (697)
T ss_pred EEEc
Confidence 8854
No 186
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.39 E-value=0.0022 Score=63.68 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=64.3
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHH---HHHHHHhhhCCCCCcEEEEecCcccC----CCCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQ---WKHQFKLWSTADDSMICRFTSEAKDK----PMGCG 98 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Q---w~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~ 98 (552)
..++-|.||=|||+++..+++ -.++++=|++.+..|+.. |...|-+++++ .++...++.... .-.++
T Consensus 92 G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl---sv~~~~~~~~~~~r~~~Y~~d 168 (266)
T PF07517_consen 92 GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL---SVGIITSDMSSEERREAYAAD 168 (266)
T ss_dssp TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT-----EEEEETTTEHHHHHHHHHSS
T ss_pred ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhh---ccccCccccCHHHHHHHHhCc
Confidence 557889999999998776554 346788899999999976 55555566654 567666654321 12478
Q ss_pred EEEEcccccccccccchhHHHHHHHHhcCcccEEEEccC
Q psy11640 99 ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDG 137 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~ 137 (552)
|+-+|...+....-|..-.... .......++++|+||+
T Consensus 169 I~Y~t~~~~~fD~Lrd~~~~~~-~~~~~r~~~~~ivDEv 206 (266)
T PF07517_consen 169 IVYGTNSEFGFDYLRDNLALSK-NEQVQRGFDFAIVDEV 206 (266)
T ss_dssp EEEEEHHHHHHHHHHHTT-SSG-GG--SSSSSEEEECTH
T ss_pred ccccccchhhHHHHHHHHhhcc-chhccCCCCEEEEecc
Confidence 9999988775321110000000 0111368899999985
No 187
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.35 E-value=0.015 Score=51.00 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=30.2
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc--------CCcE-EEEecCchhHHHHHHHHHhhhC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV--------RKRA-LVLCNSGVSVEQWKHQFKLWST 77 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~--------~~~~-LIl~Pt~~Lv~Qw~~e~~~~~~ 77 (552)
+++-..+++|+|+|||.++-.++... ..++ .+-+|...-...+..++...++
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 63 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALG 63 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34456677999999999888777643 3333 3445544434566666665554
No 188
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.07 E-value=0.0023 Score=61.05 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=18.8
Q ss_pred ceeecchhHHHHHHHhhhccceeeecceecccccc
Q psy11640 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDK 251 (552)
Q Consensus 217 E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~ 251 (552)
|+++......+.++..+...+++.++|-|.+-|..
T Consensus 127 EaQN~t~~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 127 EAQNLTPEELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp SGGG--HHHHHHHHTTB-TT-EEEEEE--------
T ss_pred cccCCCHHHHHHHHcccCCCcEEEEecCceeecCC
Confidence 66666667777788888888999999988776544
No 189
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.95 E-value=0.069 Score=61.09 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=55.6
Q ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHcC-----------Cc-eEeCCCCHHHHHHHHHhhccC---CCeeEEEEe--Ccc
Q psy11640 324 AYHERRGDKTIVFSDNVFALKHYAVKMN-----------KP-YIYGPTSQSERIQILQNFKLN---PKVNTIFVS--KVA 386 (552)
Q Consensus 324 ~~~~~~g~kvIVF~~~~~~~~~l~~~L~-----------~~-~i~G~~~~~eR~~il~~F~~~---g~~~vLv~T--~v~ 386 (552)
+.....++.+|||.++-..++.+...+. .. ++.+. ...++..++++|+.. +.--||+++ ...
T Consensus 516 ~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~ 594 (705)
T TIGR00604 516 EFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKV 594 (705)
T ss_pred HHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcc
Confidence 3343457889999999888887766541 22 33343 226889999999642 344588888 789
Q ss_pred ccccCCCC--CCEEEEec
Q psy11640 387 DTSFDLPE--ANVLIQIS 402 (552)
Q Consensus 387 ~~GlDlp~--a~~VI~~~ 402 (552)
.||||+++ +.+||++.
T Consensus 595 sEGIDf~~~~~r~ViivG 612 (705)
T TIGR00604 595 SEGIDFCDDLGRAVIMVG 612 (705)
T ss_pred cCccccCCCCCcEEEEEc
Confidence 99999998 57888865
No 190
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.79 E-value=0.011 Score=59.85 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=38.1
Q ss_pred hccCeecCCCCchhHHHHHHHH----hcCC-----cEEEEecCchhHHHHHHHHHhhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TVRK-----RALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~~~-----~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
...++.+|||+|||+.++.++. ..+. +++++++|..+..|-..++++..
T Consensus 28 ~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 28 KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 4677889999999998887653 2233 79999999999888878877653
No 191
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.79 E-value=0.011 Score=59.85 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=38.1
Q ss_pred hccCeecCCCCchhHHHHHHHH----hcCC-----cEEEEecCchhHHHHHHHHHhhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TVRK-----RALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~~~-----~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
...++.+|||+|||+.++.++. ..+. +++++++|..+..|-..++++..
T Consensus 28 ~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 28 KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 4677889999999998887653 2233 79999999999888878877653
No 192
>PRK10536 hypothetical protein; Provisional
Probab=95.72 E-value=0.01 Score=58.48 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=25.0
Q ss_pred ceeecchhHHHHHHHhhhccceeeecceeccccc
Q psy11640 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDD 250 (552)
Q Consensus 217 E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~ 250 (552)
|++.........++..+....++.++|-|.+-|.
T Consensus 184 Eaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 184 EAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred chhcCCHHHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 4555555556667888888899999998877664
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.70 E-value=0.018 Score=50.09 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=27.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCc---EEEEecCch
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKR---ALVLCNSGV 63 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~---~LIl~Pt~~ 63 (552)
...++++|+|+|||..+..++...... ++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 455788999999999998888776654 666666553
No 194
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.32 E-value=0.077 Score=47.67 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCC--CEEEEec
Q psy11640 359 TSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEA--NVLIQIS 402 (552)
Q Consensus 359 ~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a--~~VI~~~ 402 (552)
....+...+++.|+..++.-||+++.-..||||+|+- .+||+..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~g 76 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDG 76 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEe
Confidence 4444678899999864333688888559999999984 5677643
No 195
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.91 E-value=0.096 Score=49.85 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=29.5
Q ss_pred hccCeecCCCCchhHHHHHHH---HhcCCcEEEEecCchhHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTAC---CTVRKRALVLCNSGVSVEQWKHQ 71 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i---~~~~~~~LIl~Pt~~Lv~Qw~~e 71 (552)
+-.++.+|.|+|||.+...+. ...+.++++++||...+..-.+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 345666999999997654433 24467999999998776654444
No 196
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.42 E-value=0.13 Score=46.34 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHHHHHhhccCCC--eeEEEEeCc--cccccCCCC--CCEEEEec
Q psy11640 363 ERIQILQNFKLNPK--VNTIFVSKV--ADTSFDLPE--ANVLIQIS 402 (552)
Q Consensus 363 eR~~il~~F~~~g~--~~vLv~T~v--~~~GlDlp~--a~~VI~~~ 402 (552)
+...+++.|+...+ --+|+++.- ..||||+|+ +.+||+..
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~g 77 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVG 77 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEe
Confidence 55789999985322 147777644 899999998 46777744
No 197
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.39 E-value=0.11 Score=57.90 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=33.5
Q ss_pred hhccCeecCCCCchhHHHHHHHHh---cC-----CcEEEEecCchhHHHHHHHHHh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT---VR-----KRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~---~~-----~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.+=.++.+++|+|||.+...++.. .. .++++++||---+....+.+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 456678899999999876554432 11 4689999998777666665543
No 198
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.10 E-value=0.039 Score=62.57 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=39.1
Q ss_pred hccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
+..++-+|||+|||+..++++.. .+.+++|.++|..|.+|-.++...+
T Consensus 35 ~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 35 EGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 34788899999999998877653 3489999999999999988877654
No 199
>KOG1803|consensus
Probab=93.94 E-value=0.048 Score=58.95 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=38.1
Q ss_pred hhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
|.=.++-+|||+|||.+-+.+|. ..++++||.+||.+.|++..+.+
T Consensus 201 k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 201 KDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred CCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHh
Confidence 35567779999999988777765 45789999999999999988864
No 200
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.70 E-value=0.055 Score=51.51 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=21.9
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
.++++|||+|||-.|+.++...+.+++++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 46889999999999999998887776543
No 201
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.48 E-value=0.16 Score=56.74 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=32.2
Q ss_pred hhccCeecCCCCchhHHHHHHHHh---c----CCcEEEEecCchhHHHHHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT---V----RKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~---~----~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
.+=.++.+++|+|||.+...++.. . ..++++++||.--+..-.+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 345678899999999775544432 1 2368889999877666665554
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.40 E-value=0.27 Score=43.01 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=25.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc---CCcEEEEecC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV---RKRALVLCNS 61 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl~Pt 61 (552)
.+.-++++|+|+|||..+-.++... ..+++++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 4457788999999998877777655 5555555543
No 203
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.26 E-value=0.11 Score=58.51 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=39.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.-.++.+|+|+|||.+.+.++.. .+.++|+++||...+.+..+.+..
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 45678899999999887766643 467999999999999999888875
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.19 E-value=0.52 Score=49.67 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=16.8
Q ss_pred hccCeecCCCCchhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
+--+.|+|||+|||-++.-++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999988765554
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.09 E-value=0.23 Score=47.27 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=26.2
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
..|+|||+|||-++.-+++. .++++.+++.-.--+. -.++++.|.
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g-a~eQL~~~a 52 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG-AVEQLKTYA 52 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH-HHHHHHHHH
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc-HHHHHHHHH
Confidence 57899999999877665542 2556666654332221 345555555
No 206
>KOG1805|consensus
Probab=92.90 E-value=0.36 Score=55.07 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=62.0
Q ss_pred hhccCeecCCCCchhHHHHHHH---HhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTAC---CTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---------- 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i---~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---------- 93 (552)
+.-.++.+=||+|||-+-..++ ...++++|+.+=|...|++..-.+..+. + .+..++...+-.
T Consensus 685 edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~-i---~~lRLG~~~kih~~v~e~~~~~ 760 (1100)
T KOG1805|consen 685 EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFG-I---YILRLGSEEKIHPDVEEFTLTN 760 (1100)
T ss_pred cchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccC-c---ceeecCCccccchHHHHHhccc
Confidence 4556788899999996654444 4678999999999988888777776543 1 122222222110
Q ss_pred -------------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccC
Q psy11640 94 -------------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDG 137 (552)
Q Consensus 94 -------------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~ 137 (552)
.+...||.+|--.+.+ ..+..+.||+.|+|||
T Consensus 761 ~~s~ks~~~l~~~~~~~~IVa~TClgi~~------------plf~~R~FD~cIiDEA 805 (1100)
T KOG1805|consen 761 ETSEKSYADLKKFLDQTSIVACTCLGINH------------PLFVNRQFDYCIIDEA 805 (1100)
T ss_pred ccchhhHHHHHHHhCCCcEEEEEccCCCc------------hhhhccccCEEEEccc
Confidence 1445677777443321 2355678999999986
No 207
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.087 Score=52.92 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=28.7
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
|.--+.+.|||+|||+.|-+++..+..|..|-=-|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT 131 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADAT 131 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence 55668899999999999999999888887664433
No 208
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.74 E-value=0.59 Score=53.30 Aligned_cols=88 Identities=10% Similarity=0.152 Sum_probs=67.0
Q ss_pred cCchhHHHH-HHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEE
Q psy11640 311 MNPNKYRAT-QYLIAYHERRGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTI 380 (552)
Q Consensus 311 ~~~~K~~~l-~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vL 380 (552)
..++|-.+. .-++... ..|.+++|.+++...+...+..+ .+..++|+++..+|.+++....+ |+++|+
T Consensus 291 TGSGKT~va~~~il~~~-~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~Iv 368 (681)
T PRK10917 291 VGSGKTVVAALAALAAI-EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIV 368 (681)
T ss_pred CCCcHHHHHHHHHHHHH-HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEE
Confidence 345675532 2333333 46889999999988777665543 35679999999999999999995 899999
Q ss_pred EEe-CccccccCCCCCCEEEE
Q psy11640 381 FVS-KVADTSFDLPEANVLIQ 400 (552)
Q Consensus 381 v~T-~v~~~GlDlp~a~~VI~ 400 (552)
|+| ..+...+.+..+.+||+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EchHHHhcccchhcccceEEE
Confidence 999 56677788889988886
No 209
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.62 E-value=0.12 Score=59.01 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=34.7
Q ss_pred hhccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
++..++-+|||+|||+..+.++. ..+++++|=+.|..|-+|..
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 45567779999999999876543 35789999999999988863
No 210
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.32 E-value=0.77 Score=52.61 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=28.5
Q ss_pred hhccCeecCCCCchhHHHHHHHH---hcC--CcEEEEecCchhHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC---TVR--KRALVLCNSGVSVE 66 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~---~~~--~~~LIl~Pt~~Lv~ 66 (552)
.+-.++.+++|+|||.+.-+++. ..+ .++++++||-..+.
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 34577789999999987644433 344 57888999876554
No 211
>PRK04296 thymidine kinase; Provisional
Probab=92.21 E-value=0.5 Score=44.65 Aligned_cols=30 Identities=17% Similarity=0.009 Sum_probs=23.1
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEec
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCN 60 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~P 60 (552)
++.+|+|+|||..++.++.+ .+.+++++-|
T Consensus 6 litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999888877654 4667888766
No 212
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=92.17 E-value=1.5 Score=39.13 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----CCceE-eCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccC
Q psy11640 317 RATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----NKPYI-YGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFD 391 (552)
Q Consensus 317 ~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~~~~i-~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlD 391 (552)
..+-.|+++....|.+++|+|++...++.|-+.| .-.+| ||-.... . .....|+++++... -.
T Consensus 16 ~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~-~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 16 RFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------P-AARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------S-TT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------C-CCCCeEEEecCccc--CC
Confidence 5666788877789999999999999999999999 12222 2221100 1 12457888774432 34
Q ss_pred CCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCe
Q psy11640 392 LPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSY 462 (552)
Q Consensus 392 lp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~ 462 (552)
.+.++++|+++. .. +.. +.|-. .++.+|+.+......++.|=+.+.+.||..
T Consensus 84 ~~~~~vLinL~~-~~-p~~-------~~~f~----------rvieiv~~~~~~~~~aR~r~r~Yk~~G~~l 135 (137)
T PF04364_consen 84 NNHADVLINLSG-EV-PPF-------FSRFE----------RVIEIVDQDDEAKQAARERYRFYKDRGYEL 135 (137)
T ss_dssp -S--SEEEE--S-S---GG-------GGG-S----------EEEEEE-SSHHHHHHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEECCC-CC-cch-------hhccc----------EEEEEecCCHHHHHHHHHHHHHHHHcCCCC
Confidence 455899999984 22 211 22222 278899887666667777788899999754
No 213
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.07 E-value=0.99 Score=40.43 Aligned_cols=34 Identities=6% Similarity=-0.036 Sum_probs=24.9
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVS 64 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~L 64 (552)
++++|+|+|||..+..++.. .+.+++++.....+
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 57899999999988776653 35677777765443
No 214
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.06 E-value=0.27 Score=45.89 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=33.5
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.+|||+|||..++.++. ..+.+++++.. .+...+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 4679999999999887654 45678888876 45677787777665
No 215
>KOG0701|consensus
Probab=91.82 E-value=0.1 Score=62.95 Aligned_cols=88 Identities=18% Similarity=0.375 Sum_probs=72.3
Q ss_pred eEEEEeccHHHHHHHHHHc------CCceEeCCCC-----------HHHHHHHHHhhccCCCeeEEEEeCccccccCCCC
Q psy11640 332 KTIVFSDNVFALKHYAVKM------NKPYIYGPTS-----------QSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L------~~~~i~G~~~-----------~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~ 394 (552)
-.|+|++....+..+.+.+ .+.+++|.+. .-.+.+++..|.. ..+++|++|.++.+|+|+|.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~-~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHF-HELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhh-hhhhHHHHHHHHHhhcchhh
Confidence 5679999888887777766 3455777543 2346788999997 69999999999999999999
Q ss_pred CCEEEEeccCCCChhhHHHHhhhcccc
Q psy11640 395 ANVLIQISSHGGSRRQEAQRLGRILRA 421 (552)
Q Consensus 395 a~~VI~~~~~~~s~~q~~Qr~GRi~R~ 421 (552)
|+.++..+ .+...+.++|+.||+-++
T Consensus 373 ~~~~~~~~-~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFD-APTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheecc-CcchHHHHHHhhcccccc
Confidence 99999999 488899999999999543
No 216
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.71 E-value=0.19 Score=57.47 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=38.1
Q ss_pred hhhccCeecCCCCchhHHHHHHHHh----cC--CcEEEEecCchhHHHHHHHHHh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCT----VR--KRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~----~~--~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.++..++-+|||+|||+..+.++.. .+ .++++++.|..=..|-.+|+++
T Consensus 28 ~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 28 RGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3456788899999999987765432 22 4688888888888899999987
No 217
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=91.67 E-value=0.61 Score=45.20 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=49.6
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcC-CcEEEEecCchhHHHHHHHHHh-hhCCCCCcEEEEecCcccC---------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVR-KRALVLCNSGVSVEQWKHQFKL-WSTADDSMICRFTSEAKDK--------- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~-~~~LIl~Pt~~Lv~Qw~~e~~~-~~~~~~~~I~~~~g~~~~~--------- 93 (552)
+-...-|=+|.|||-|-+-+++ ..+ +=+.++|| +.|..|-.+-+.. +.++-...|..+.=+....
T Consensus 42 ~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~ 120 (229)
T PF12340_consen 42 KNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKI 120 (229)
T ss_pred CCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHH
Confidence 3345579999999977654433 223 34667888 5699999988874 4444334455443322111
Q ss_pred -------CCCCcEEEEccccc
Q psy11640 94 -------PMGCGILVTTYSMI 107 (552)
Q Consensus 94 -------~~~~~IvItTy~~l 107 (552)
....+|+++|++.+
T Consensus 121 ~~l~~~~~~~~gill~~PEhi 141 (229)
T PF12340_consen 121 RQLLEECMRSGGILLATPEHI 141 (229)
T ss_pred HHHHHHHHHcCCEEEeChHHH
Confidence 14578999999965
No 218
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=91.61 E-value=0.74 Score=46.71 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=68.9
Q ss_pred hcCchhHHHHHHHHHHH-----hhcCCeEEEEeccHHHHHHHHHHc-C----CceEeCCCCHHHHHHHH-----------
Q psy11640 310 VMNPNKYRATQYLIAYH-----ERRGDKTIVFSDNVFALKHYAVKM-N----KPYIYGPTSQSERIQIL----------- 368 (552)
Q Consensus 310 ~~~~~K~~~l~~Ll~~~-----~~~g~kvIVF~~~~~~~~~l~~~L-~----~~~i~G~~~~~eR~~il----------- 368 (552)
...++|+..|.+|+... ...+-+++|.++....++.+...| | +..+.|.....+....-
T Consensus 92 ~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~ 171 (297)
T PF11496_consen 92 AYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSN 171 (297)
T ss_dssp HHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S------------
T ss_pred HHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccccc
Confidence 45689999999999887 556679999999999999999987 3 23455554333222221
Q ss_pred -HhhccC--CCeeEEEEeCccccc-----cCCCCCCEEEEeccCCCCh-hhHHHHhhhccccCCCCCCCceeEEEEEEec
Q psy11640 369 -QNFKLN--PKVNTIFVSKVADTS-----FDLPEANVLIQISSHGGSR-RQEAQRLGRILRAKKGAIAEEYNAFFYTLVS 439 (552)
Q Consensus 369 -~~F~~~--g~~~vLv~T~v~~~G-----lDlp~a~~VI~~~~~~~s~-~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs 439 (552)
...... .++.+.++|+-+..- ++-...+.||-+|+ ..++ .-.+|.+=...|.+ + .+-|+.||.
T Consensus 172 ~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~-~~d~~~p~i~~lR~~~~~~--~-----~~PiirLv~ 243 (297)
T PF11496_consen 172 NSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDP-SFDTSLPSIEQLRTQNRRN--R-----LCPIIRLVP 243 (297)
T ss_dssp ----------SEEEEEEESS---TTTS--TT-S-EEEEEE-SS-T--TTSHHHHHHH--------------S--EEEEEE
T ss_pred ccccccccccceEEEEecCccccccCCCccccCCcCEEEEecC-CCCCCChHHHHHHhhcCCC--C-----CCcEEEEee
Confidence 111111 245555555333222 33346789999995 4333 33556654444433 2 477999999
Q ss_pred CCchhhHH
Q psy11640 440 QDTMEMSY 447 (552)
Q Consensus 440 ~~t~e~~~ 447 (552)
.+|+|-..
T Consensus 244 ~nSiEHi~ 251 (297)
T PF11496_consen 244 SNSIEHIE 251 (297)
T ss_dssp TTSHHHHH
T ss_pred CCCHHHHH
Confidence 99999754
No 219
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=91.21 E-value=3.2 Score=37.24 Aligned_cols=121 Identities=12% Similarity=0.086 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----CCceE-eCCCCHHHHHHHHHhhccCCCeeEEEEeCccc
Q psy11640 313 PNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----NKPYI-YGPTSQSERIQILQNFKLNPKVNTIFVSKVAD 387 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~~~~i-~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~ 387 (552)
+.+...+-.|+++....|.+++|.|.+...++.|-+.| .-.+| ||-.... . .....|+++. +
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~--------~--~~~~PV~l~~---~ 78 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG--------P--AAGQPVLLTW---P 78 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC--------C--CCCCCEEEEc---C
Confidence 44666777788887789999999999999999999998 22333 2221100 0 1245777762 1
Q ss_pred cccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEe
Q psy11640 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVI 465 (552)
Q Consensus 388 ~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~ 465 (552)
..-+.+.++++|+++. . .|. +.. |- -.|+.+|..+..+...++.|=+.|.+.||....-
T Consensus 79 ~~~~~~~~~~LinL~~-~-~p~-~~~------~F----------~Rvieiv~~d~~~~~~aR~r~r~Yr~~G~~l~~~ 137 (142)
T PRK05728 79 GKRNANHRDLLINLDG-A-VPA-FAA------AF----------ERVVDFVGYDEAAKQAARERWKAYRAAGYALTYW 137 (142)
T ss_pred CCCCCCCCcEEEECCC-C-Ccc-hhh------cc----------cEEEEEeCCCHHHHHHHHHHHHHHHHCCCCceEe
Confidence 2235677889999873 2 121 212 21 2267888766666666777778899999876443
No 220
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.15 E-value=0.91 Score=44.48 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=33.0
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
-++.+|+|+|||..++.++.. .+.++++++- .+-..|..+.+..+
T Consensus 24 ~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHh
Confidence 356799999999998876653 4667888875 45677777766654
No 221
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=90.62 E-value=0.34 Score=49.01 Aligned_cols=49 Identities=12% Similarity=0.115 Sum_probs=36.7
Q ss_pred hccCeecCCCCchhHHHHHHHH----hc---CCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TV---RKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~---~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
.-.++.++.|||||.+.+.-+. .. ..++|+|++|+..+....+.+...+
T Consensus 14 ~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 14 GPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 3456789999999998776443 22 3579999999999888888887654
No 222
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.54 E-value=2.2 Score=48.56 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=66.0
Q ss_pred cCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC
Q psy11640 311 MNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~ 384 (552)
..++|-.+...++......|.++||.++++..+..+.+.| + +..+||+++..+|.+...+... ++.+|+|.|.
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~IVVgTr 249 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKVVIGAR 249 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEecc
Confidence 3457877665566555557889999999988877666555 3 5679999999999999999885 7899999984
Q ss_pred ccccccCCCCCCEEEEe
Q psy11640 385 VADTSFDLPEANVLIQI 401 (552)
Q Consensus 385 v~~~GlDlp~a~~VI~~ 401 (552)
.+- =+.+.+..+||+-
T Consensus 250 sal-~~p~~~l~liVvD 265 (679)
T PRK05580 250 SAL-FLPFKNLGLIIVD 265 (679)
T ss_pred HHh-cccccCCCEEEEE
Confidence 221 2456677777763
No 223
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.43 E-value=0.86 Score=44.50 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=30.9
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.--++..|+|+|||..+..+++ ..+.++++++. .+-..+..+.+..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~-e~~~~~~~~~~~~ 73 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST-QLTTTEFIKQMMS 73 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHH
Confidence 3456779999999999876665 34567888875 3344555555543
No 224
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.37 E-value=1.5 Score=48.05 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=64.8
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
..+|-.+...++......|.++||.++.+..+..+.+.| .+..+||+++..+|.+...+... |+.+|+|.|..
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~IVVGTrs 85 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILVVIGTRS 85 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCEEECChH
Confidence 456766655566555567889999999988776665554 35679999999999999888885 78999999843
Q ss_pred cccccCCCCCCEEEEe
Q psy11640 386 ADTSFDLPEANVLIQI 401 (552)
Q Consensus 386 ~~~GlDlp~a~~VI~~ 401 (552)
+- =+.+++...||+-
T Consensus 86 al-f~p~~~l~lIIVD 100 (505)
T TIGR00595 86 AL-FLPFKNLGLIIVD 100 (505)
T ss_pred HH-cCcccCCCEEEEE
Confidence 21 1456677777763
No 225
>KOG0738|consensus
Probab=90.04 E-value=0.32 Score=50.25 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=36.7
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
|..+.++|+|+|||+.|-+++..-+ .+.+=|.++.|+.-|+-|=++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechhhhhhhhccchHHH
Confidence 4567789999999999988776665 6777777788998887665543
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.01 E-value=1.2 Score=42.37 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.3
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~ 62 (552)
.+++|+|+|||..++.++. ..+.+++++....
T Consensus 16 ~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 16 QIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4679999999999887765 3456788777743
No 227
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=89.59 E-value=0.98 Score=45.42 Aligned_cols=102 Identities=10% Similarity=0.092 Sum_probs=55.3
Q ss_pred CeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHH-----HHHHHHHh--hhCCCCCcEEEEecCcccCCCCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVE-----QWKHQFKL--WSTADDSMICRFTSEAKDKPMGCG 98 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~-----Qw~~e~~~--~~~~~~~~I~~~~g~~~~~~~~~~ 98 (552)
++.+|||+||+-.-=.++.. ....+++|+|.+..+- -|.-++.. |..-++..+.-.+|.- ..+
T Consensus 91 ~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~-----~P~ 165 (369)
T PF02456_consen 91 VVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTF-----RPK 165 (369)
T ss_pred EEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccc-----ccc
Confidence 45699999999554444432 2346899999876542 26666552 2211222233222222 245
Q ss_pred EEEEcccccccccccchh-HHHHHHHHhcCcccEEEEccC
Q psy11640 99 ILVTTYSMISHTQKRSWE-ADQTMQWLQNQEWGIMLLDDG 137 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~-~~~~~~~l~~~~~~liIvDE~ 137 (552)
.+-.||+-+....+-... ...+.........-.||+|||
T Consensus 166 Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDEC 205 (369)
T PF02456_consen 166 FVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDEC 205 (369)
T ss_pred ceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHH
Confidence 777888866543222111 111222333467889999996
No 228
>KOG1513|consensus
Probab=89.44 E-value=0.64 Score=51.92 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=47.9
Q ss_pred HHhhccCCCeeEEEEeCccccccCCCCCCEEEE--------eccCCCChhhHHHHhhhccccCCCC
Q psy11640 368 LQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ--------ISSHGGSRRQEAQRLGRILRAKKGA 425 (552)
Q Consensus 368 l~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~--------~~~~~~s~~q~~Qr~GRi~R~~~~k 425 (552)
-++|-+ |+-.|.|.|.+++-||.|+.-..|++ +. .|||-...+|..||.||..|=.
T Consensus 850 KqrFM~-GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLE-LPWSADrAIQQFGRTHRSNQVs 913 (1300)
T KOG1513|consen 850 KQRFMD-GEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLE-LPWSADRAIQQFGRTHRSNQVS 913 (1300)
T ss_pred Hhhhcc-ccceeeeeehhhccCceeecchhhhhhhheEEEEEE-CCcchhHHHHHhcccccccccC
Confidence 467885 88889999999999999998776654 56 6999999999999999988844
No 229
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.26 E-value=2.4 Score=41.54 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=16.0
Q ss_pred CeecCCCCchhHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~ 49 (552)
++++|+|+|||..++.++.
T Consensus 5 ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 6789999999998877654
No 230
>KOG0745|consensus
Probab=89.09 E-value=0.31 Score=50.97 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=29.3
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVS 64 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~L 64 (552)
|.-.+++.|||+|||+.|-.++.-+..|+.| |....|
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaI-cDcTtL 262 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAI-CDCTTL 262 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEE-ecccch
Confidence 5667899999999999999999888888654 444444
No 231
>PRK14974 cell division protein FtsY; Provisional
Probab=89.06 E-value=1.1 Score=46.29 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=27.9
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecC---chhHHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNS---GVSVEQWKHQFK 73 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt---~~Lv~Qw~~e~~ 73 (552)
.--.+++|+|+|||-+...++. ..+.+++++... ...+.||.....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHH
Confidence 3455679999999986655443 234566665433 345567755444
No 232
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=88.94 E-value=1.1 Score=47.02 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=45.2
Q ss_pred hhccCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILV 101 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvI 101 (552)
++--.+|+|||.|||-+-.-++++ ..+++-||+.-.--+. -.++++.|..+-...+. ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG-A~EQLk~Ya~im~vp~~---------------vv 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG-AVEQLKTYADIMGVPLE---------------VV 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh-HHHHHHHHHHHhCCceE---------------Ee
Confidence 455667899999999665444442 2234444443222222 45667766654333333 34
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLD 135 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvD 135 (552)
.++.-|. ..+..+ .++++|.+|
T Consensus 267 ~~~~el~----------~ai~~l--~~~d~ILVD 288 (407)
T COG1419 267 YSPKELA----------EAIEAL--RDCDVILVD 288 (407)
T ss_pred cCHHHHH----------HHHHHh--hcCCEEEEe
Confidence 4444442 334445 677999999
No 233
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.88 E-value=0.61 Score=45.15 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=25.6
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
++.+++|+|||.....++... .-+.+..|+..+...|.
T Consensus 2 vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~ 39 (234)
T PF01443_consen 2 VVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWL 39 (234)
T ss_pred EEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccc
Confidence 456899999998777776655 22333445566766666
No 234
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=88.73 E-value=1.7 Score=49.18 Aligned_cols=88 Identities=8% Similarity=0.148 Sum_probs=66.4
Q ss_pred cCchhHHHH-HHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEE
Q psy11640 311 MNPNKYRAT-QYLIAYHERRGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTI 380 (552)
Q Consensus 311 ~~~~K~~~l-~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vL 380 (552)
..++|-.+. .-++... ..|.+++|.+++..-+...++.+ .+..++|+++..+|..+++...+ |+++++
T Consensus 265 TGSGKT~va~l~il~~~-~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAI-EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLV 342 (630)
T ss_pred CCCcHHHHHHHHHHHHH-HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEE
Confidence 345675532 3333333 46789999999988777655443 34679999999999999999995 899999
Q ss_pred EEe-CccccccCCCCCCEEEE
Q psy11640 381 FVS-KVADTSFDLPEANVLIQ 400 (552)
Q Consensus 381 v~T-~v~~~GlDlp~a~~VI~ 400 (552)
|+| ..+...+++..+.+||+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EecHHHHhccccccccceEEE
Confidence 998 66677788888888876
No 235
>PRK10867 signal recognition particle protein; Provisional
Probab=88.71 E-value=1.5 Score=46.98 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=22.5
Q ss_pred hccCeecCCCCchhHHHHHHHHh---c-CCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---V-RKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~-~~~~LIl~P 60 (552)
+--+.+.|+|+|||.++..++.. . +.++++++-
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 34567799999999988766652 2 455655543
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.60 E-value=0.61 Score=46.31 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=31.8
Q ss_pred hccCeecCCCCchhHHHHHHHHh--cCCcEEEEecCchhHHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT--VRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~--~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
+--+..+|+|+|||..|+++... ..+..+..+++.+|+.+++..+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 34567799999999998877543 23344555566678887777664
No 237
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.39 E-value=0.56 Score=40.67 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=26.0
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~ 62 (552)
++.+|+|+|||..+-.++...+.+++.+....
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred EEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 46899999999999988888877776666644
No 238
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=88.27 E-value=1.4 Score=44.49 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=21.5
Q ss_pred hccCeecCCCCchhHHHHHHHHh---c-C-CcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---V-R-KRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~-~-~~~LIl~P 60 (552)
+--.+++|||+|||.++..++.. . + .++.+|.-
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 34557799999999887666542 2 3 45555543
No 239
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=88.26 E-value=0.76 Score=44.51 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=32.7
Q ss_pred cCeecCCCCchhHHHHHHHH---hc-CCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TV-RKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~-~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
-++.+|+|+|||+.++..+. .. +.++++++-. +-..++.+.++.+.
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e-e~~~~l~~~~~s~g 71 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE-EPPEELIENMKSFG 71 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS-S-HHHHHHHHHTTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec-CCHHHHHHHHHHcC
Confidence 35679999999999887664 34 7888888864 46677888887653
No 240
>PRK04328 hypothetical protein; Provisional
Probab=87.98 E-value=2 Score=42.41 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=31.1
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.+|+|+|||..++.++.. .+.+++++.- .+-..+..+.++.|
T Consensus 27 li~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 27 LLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHc
Confidence 56799999999988876653 4567777765 44566666666554
No 241
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.87 E-value=2.3 Score=45.34 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=23.6
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
-...++++|+|+|||..|-.++...+.+.+.+.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345678899999999988877665554444443
No 242
>KOG0731|consensus
Probab=87.87 E-value=0.38 Score=54.25 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=31.6
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
|=-|..++++|+|+|||+.|-+.+...+.|.+-++-+
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGS 378 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGS 378 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechH
Confidence 3446788999999999999999999999998877663
No 243
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=87.81 E-value=0.74 Score=42.72 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=38.5
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
-++.+|+|+|||..|..++...+.+++.+++....-..|.+.+....
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~ 50 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHR 50 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHH
Confidence 46778999999999999888877788888887777777888876554
No 244
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=87.35 E-value=5.9 Score=44.46 Aligned_cols=51 Identities=8% Similarity=-0.029 Sum_probs=36.1
Q ss_pred hhhccCeecCCCCchhHHHHHHH---Hh-cCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTAC---CT-VRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i---~~-~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
||+-.+..+|=|.|||-+...++ +. .+.+++|.+|...-+.+..+.++..+
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHH
Confidence 45667788999999996544222 22 56789999998877777666655444
No 245
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.18 E-value=1 Score=41.81 Aligned_cols=45 Identities=7% Similarity=0.009 Sum_probs=37.0
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.+|+|+|||..|..++...+.++++++....+=.-|.+.+.++
T Consensus 3 li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 3 LVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHH
Confidence 467899999999999988877789999999887766677776653
No 246
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.18 E-value=2 Score=45.04 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=17.2
Q ss_pred hccCeecCCCCchhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
.-..+++|||+|||.++..++.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3456779999999988777664
No 247
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.10 E-value=3.9 Score=46.31 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=72.3
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----C---CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----N---KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~---~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~ 384 (552)
.+.|-++...+++.....|..+||.++.+..+..+...| + +..+|++++..+|.+...+... |+.+|+|.|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcEEEEcc
Confidence 468999888899888788999999999887776655554 4 5679999999999999999985 8999999984
Q ss_pred ccccccCCCCCCEEEEeccCCCC
Q psy11640 385 VADTSFDLPEANVLIQISSHGGS 407 (552)
Q Consensus 385 v~~~GlDlp~a~~VI~~~~~~~s 407 (552)
.+-- .-+++...||+-+.+..|
T Consensus 249 SAvF-aP~~~LgLIIvdEEhd~s 270 (665)
T PRK14873 249 SAVF-APVEDLGLVAIWDDGDDL 270 (665)
T ss_pred eeEE-eccCCCCEEEEEcCCchh
Confidence 4321 455566677775534433
No 248
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=87.08 E-value=0.7 Score=43.22 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=24.3
Q ss_pred hhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVE 66 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~ 66 (552)
+.--++.+|||+|||..|.+++. ..+.+++++.- ..|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~-~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA-SDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH-HHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec-Cceec
Confidence 34466779999999999888764 34556666543 34543
No 249
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.00 E-value=0.64 Score=46.34 Aligned_cols=33 Identities=6% Similarity=0.142 Sum_probs=27.1
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
..-++.+|+|+|||..|.++....+.+++.++-
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~ 54 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLING 54 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeC
Confidence 456678999999999999888878888887753
No 250
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=86.98 E-value=2.6 Score=49.64 Aligned_cols=87 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred CchhHHHHH-HHHHHHhhcCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEE
Q psy11640 312 NPNKYRATQ-YLIAYHERRGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381 (552)
Q Consensus 312 ~~~K~~~l~-~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv 381 (552)
..+|-.+.. -++... ..+.+++|.++++..+......+ ++..++|.++..++.++++.++. |+++++|
T Consensus 482 GsGKT~val~a~l~al-~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAV-LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHH-HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceEEE
Confidence 345665332 223322 36789999999998887766544 24568999999999999999995 8999999
Q ss_pred Ee-CccccccCCCCCCEEEE
Q psy11640 382 VS-KVADTSFDLPEANVLIQ 400 (552)
Q Consensus 382 ~T-~v~~~GlDlp~a~~VI~ 400 (552)
+| ..+...+.+..+.+||+
T Consensus 560 GTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred chHHHhhCCCCcccCCEEEe
Confidence 99 67777788999998887
No 251
>KOG0651|consensus
Probab=86.43 E-value=0.69 Score=46.53 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=32.7
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQ 67 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Q 67 (552)
+-++++.|+|+|||++|=+.++..+...|.++-+ +|+.-
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss-~lv~k 205 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSS-ALVDK 205 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHh-hhhhh
Confidence 4577889999999999999999999888887764 56654
No 252
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.23 E-value=2.2 Score=45.66 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=22.8
Q ss_pred hhccCeecCCCCchhHHHHHHHHh----cCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~P 60 (552)
..--..+.|+|+|||.++..++.. .+.++++++-
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 344567799999999987766543 3445555543
No 253
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.18 E-value=2.1 Score=45.87 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=16.2
Q ss_pred ccCeecCCCCchhHHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~ 49 (552)
--.+++|||+|||.++..++.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456779999999987766543
No 254
>KOG1807|consensus
Probab=86.07 E-value=0.91 Score=50.65 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=41.7
Q ss_pred HHHhhhccCeecCCCCchhHHHHHHHHh---------cCCcEEEEecCchhHHHHHHHHHh
Q psy11640 23 KKKKKKKKKKKKRPSAGKSLVGVTACCT---------VRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 23 ~~~~~~~~~~vlpTG~GKTl~ai~~i~~---------~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
-+.+++=.++.+|+|+|||++++.++.. ..-|+||+|-|...++|....+..
T Consensus 389 s~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 389 SKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred HHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 3446677899999999999998877642 235899999999999998877764
No 255
>PRK10689 transcription-repair coupling factor; Provisional
Probab=86.00 E-value=3.7 Score=49.48 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=64.2
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEE
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFV 382 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~ 382 (552)
..+|-.+....+-.....+.+++|.++++..+......+ ++..++|..+..++..+++..+. +.++|+|+
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~-g~~dIVVg 709 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE-GKIDILIG 709 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 345765432222112246889999999998877665544 23568999999999999999985 78999999
Q ss_pred e-CccccccCCCCCCEEEE
Q psy11640 383 S-KVADTSFDLPEANVLIQ 400 (552)
Q Consensus 383 T-~v~~~GlDlp~a~~VI~ 400 (552)
| ..+...+++..+.+||+
T Consensus 710 Tp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 710 THKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CHHHHhCCCCHhhCCEEEE
Confidence 9 66666677788888876
No 256
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.97 E-value=0.74 Score=47.24 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=29.9
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVE 66 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~ 66 (552)
|.-+..+|+|+|||+.|=+.+.+....++=|+- ++||+
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg-SElVq 223 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG-SELVQ 223 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCceEEEecc-HHHHH
Confidence 445667999999999999888887777776666 56875
No 257
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=85.53 E-value=3.3 Score=44.17 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=22.1
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~P 60 (552)
+--..|+|+|+|||-++..++.. .+.++++++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 34467799999999877665542 3456666654
No 258
>PRK12377 putative replication protein; Provisional
Probab=85.51 E-value=1 Score=44.50 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=27.5
Q ss_pred ccCeecCCCCchhHHHHHHHHhc---CCcEEEEecCchhHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKHQ 71 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl~Pt~~Lv~Qw~~e 71 (552)
--++.+|+|+|||..+.+++... +.++ +.++..+|+.+....
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHHHHHH
Confidence 34677999999999888776532 3444 444545676655443
No 259
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.23 E-value=0.86 Score=40.31 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=23.7
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
++++|||+|||..+-.++...+.+++.+.-+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~ 33 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCS 33 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-T
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEec
Confidence 5789999999999888887777776554433
No 260
>PRK11054 helD DNA helicase IV; Provisional
Probab=85.23 E-value=0.94 Score=51.47 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=46.3
Q ss_pred hccCeecCCCCchhHHHHHHHHh-------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~Iv 100 (552)
...++.+..|+|||.+.++-++. ...++|+|+.++..+....+.+...++. ..|.
T Consensus 210 ~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~------------------~~v~ 271 (684)
T PRK11054 210 DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT------------------EDIT 271 (684)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC------------------CCcE
Confidence 34678899999999988775532 1347999999998887677777755421 2467
Q ss_pred EEccccccc
Q psy11640 101 VTTYSMISH 109 (552)
Q Consensus 101 ItTy~~l~~ 109 (552)
|.|+..+..
T Consensus 272 v~TFHSlal 280 (684)
T PRK11054 272 ARTFHALAL 280 (684)
T ss_pred EEeHHHHHH
Confidence 888887754
No 261
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=0.71 Score=50.50 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=38.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
+.-++.+|+|+|||+.|-+++...+.+++-+-.+ +|+..|.-|..+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek 322 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEK 322 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHHH
Confidence 3667889999999999999998888888877776 788888777664
No 262
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.84 E-value=4.3 Score=37.34 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=20.3
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEe
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLC 59 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~ 59 (552)
++++|+|+|||..+..++.. .+.+++++.
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 46799999999988776653 344555444
No 263
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.84 E-value=4.5 Score=42.50 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=30.7
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.+|+|+|||..++.++.. .+.+++++... +...|......++
T Consensus 86 LI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHc
Confidence 35689999999988776653 34678888764 4567776665543
No 264
>KOG2340|consensus
Probab=84.73 E-value=7.1 Score=42.15 Aligned_cols=91 Identities=7% Similarity=0.017 Sum_probs=59.5
Q ss_pred CCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC--ccccccCCCCCCEEEEec
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK--VADTSFDLPEANVLIQIS 402 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~--v~~~GlDlp~a~~VI~~~ 402 (552)
-..+||+.++-..--.+..++ +...|+-=++...-.+.-+-|.+ |..++|+-|. -.=+-.+|.++..||+|.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~q-gr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQ-GRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHh-cCceEEEEehhhhhhhhheecceeeEEEec
Confidence 346788887644444444444 22334444455555566677886 7889999883 244668999999999999
Q ss_pred cCCCChhhH---HHHhhhccccC
Q psy11640 403 SHGGSRRQE---AQRLGRILRAK 422 (552)
Q Consensus 403 ~~~~s~~q~---~Qr~GRi~R~~ 422 (552)
+|.+|.-| +-+.+|..-.|
T Consensus 631 -pP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 631 -PPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred -CCCCcHHHHHHHhhhhhhhccC
Confidence 79888766 44555554433
No 265
>PRK09354 recA recombinase A; Provisional
Probab=84.57 E-value=3.4 Score=42.86 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=26.4
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVE 66 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~ 66 (552)
.+..|+|+|||..++.++. ..+.+++++-.-..+-.
T Consensus 64 eI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 64 EIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH
Confidence 3678999999999887765 45677887777554443
No 266
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=2.1 Score=48.68 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=35.8
Q ss_pred eecCCCCchhHHHHHHHHhcCC--cEEEEecCchhHHHHHHHHHhhhCCCCCcEE
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRK--RALVLCNSGVSVEQWKHQFKLWSTADDSMIC 84 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~--~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~ 84 (552)
.++|||.|||-.|-+++..+.+ ..+|=..-++-.+ ...+.+..+.|+.-|+
T Consensus 526 F~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E--kHsVSrLIGaPPGYVG 578 (786)
T COG0542 526 FLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME--KHSVSRLIGAPPGYVG 578 (786)
T ss_pred eeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH--HHHHHHHhCCCCCCce
Confidence 3599999999999988876653 6777777665433 4556666666655554
No 267
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=84.24 E-value=3.2 Score=47.49 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=19.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhcC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
...++.+|+|+|||..|-++.....
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567889999999998887765443
No 268
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=84.21 E-value=1.6 Score=45.48 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=38.5
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
+=.-++.++|+|+|||-+|-.++...+..+.-+..+..-+...++.+++
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH
Confidence 3456789999999999999888888888888777777777666666653
No 269
>PRK08116 hypothetical protein; Validated
Probab=83.95 E-value=1.3 Score=44.25 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=27.1
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQ 71 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e 71 (552)
-++++|+|+|||..+.+++.. .+.+++++ +...++..+...
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 457799999999998877654 34455444 445566544444
No 270
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=83.49 E-value=4.4 Score=40.23 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=27.7
Q ss_pred eecCCCCchhHHHHHHHHh---------cCCcEEEEecCchhHHHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACCT---------VRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~---------~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
+++|+|+|||-.++.++.. ...+++++......-.+-..++.
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~ 93 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIA 93 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHh
Confidence 5699999999888876643 24568988876654443333333
No 271
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.47 E-value=3.3 Score=47.94 Aligned_cols=49 Identities=6% Similarity=0.049 Sum_probs=32.4
Q ss_pred CcccchhhhhhhhhhHHHHHHHHHhhhcc-CeecCCCCchhHHHHHHHHhcC
Q psy11640 2 GFRDVISGCKKKKKKKKKKKKKKKKKKKK-KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-|.++| -++.-++..++.=++++=.+. +.++|+|+|||.+|-.++..+.
T Consensus 14 tFddII--GQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 14 TFEQMV--GQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CHHHhc--CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 355666 344445545444444444554 8899999999999988876654
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.23 E-value=1.2 Score=38.08 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=20.2
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
.+++|+|+|||-+|-.++...+-++
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeE
Confidence 4679999999999988887766443
No 273
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=83.17 E-value=0.94 Score=47.08 Aligned_cols=41 Identities=10% Similarity=-0.082 Sum_probs=31.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKH 70 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~ 70 (552)
-.++..|+|+|||+++-+++...+.+.++|... +|...|.-
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~-eL~sk~vG 190 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAG-ELESENAG 190 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHH-HhhcCcCC
Confidence 345579999999999999999988887777664 56655543
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.15 E-value=4.5 Score=43.03 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=16.5
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-.+++|+|+|||-++..++.
T Consensus 226 i~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45779999999998877765
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=83.13 E-value=4.9 Score=43.36 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=32.1
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.+|+|+|||..++.++.. .+.+++++.- .+...|+.....++
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHHHHHc
Confidence 46799999999988877653 3567888876 45667777666553
No 276
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.96 E-value=0.92 Score=44.47 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=24.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCC---cEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRK---RALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~---~~LIl~P 60 (552)
=+..+++|+|+|||...+.++..... .+.+++|
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 38889999999999888887765432 3445555
No 277
>PRK05973 replicative DNA helicase; Provisional
Probab=82.85 E-value=2 Score=42.04 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=31.7
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.++||+|||..++.++. ..+.++++++- .+-..|..+.+..+
T Consensus 68 LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 68 LLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 5679999999998887664 34667888865 34456666666655
No 278
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=82.81 E-value=2.1 Score=42.54 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=33.8
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
--++++++|+|||+.++.++. ..+.++++++.. +...+..+.+..|
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~-e~~~~l~~~~~~~ 73 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE-ESPEELLENARSF 73 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec-CCHHHHHHHHHHc
Confidence 346789999999999888775 346788888874 4566666666653
No 279
>PRK06526 transposase; Provisional
Probab=82.78 E-value=0.81 Score=45.41 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=26.6
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
..-++++|||+|||..+.+++. ..+.++++... .+|.+++.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~-----~~l~~~l~ 142 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA-----AQWVARLA 142 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH-----HHHHHHHH
Confidence 3467789999999998887654 34556655433 34555554
No 280
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.70 E-value=1.6 Score=46.05 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=27.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHh---cCCcEEEEec-C--chhHHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCN-S--GVSVEQWKH 70 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~P-t--~~Lv~Qw~~ 70 (552)
.+.-.+++|||+|||..+..++.. .+.++.++.. + ...++||..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH
Confidence 355678899999999877666543 3445655544 2 235566664
No 281
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=82.64 E-value=0.91 Score=46.06 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
+--++++||++|||-.|+.++...+..
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~e 30 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGE 30 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence 345678999999999999998887764
No 282
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.56 E-value=2.3 Score=42.34 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=24.2
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
-++.+|+|+|||..++.++. ..+.++++++-
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 35679999999999887765 34568888884
No 283
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=82.47 E-value=4.4 Score=46.19 Aligned_cols=42 Identities=5% Similarity=-0.021 Sum_probs=26.6
Q ss_pred hhhhhhHHHHHHHHHhhhc-cCeecCCCCchhHHHHHHHHhcC
Q psy11640 11 KKKKKKKKKKKKKKKKKKK-KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++.-++--++.=++++-.+ .+.++|.|+|||.++..++..+.
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444344333334344 47889999999999887776554
No 284
>PRK06921 hypothetical protein; Provisional
Probab=82.38 E-value=1.9 Score=43.15 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=24.8
Q ss_pred hccCeecCCCCchhHHHHHHHHhc----CCcEEEEecCchhHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV----RKRALVLCNSGVSVEQ 67 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~----~~~~LIl~Pt~~Lv~Q 67 (552)
+--++++|||+|||..+.+++... +..++++. ...++.+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHH
Confidence 345667999999998887766532 34455544 3445543
No 285
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=82.34 E-value=1.3 Score=50.39 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=48.1
Q ss_pred hccCeecCCCCchhHHHHHHHHh----c---CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----V---RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~---~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~Iv 100 (552)
...++++++|||||.+.+.-++. . ..++|+|+.|+..+....+.+...++.. ....+.
T Consensus 16 g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---------------~~~~v~ 80 (672)
T PRK10919 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK---------------EARGLM 80 (672)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc---------------cccCcE
Confidence 45788899999999887664432 1 2469999999999888888777665310 013477
Q ss_pred EEccccccc
Q psy11640 101 VTTYSMISH 109 (552)
Q Consensus 101 ItTy~~l~~ 109 (552)
|.|++++..
T Consensus 81 i~TfHS~~~ 89 (672)
T PRK10919 81 ISTFHTLGL 89 (672)
T ss_pred EEcHHHHHH
Confidence 899988754
No 286
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=82.25 E-value=2.7 Score=40.69 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=21.8
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRAL 56 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~L 56 (552)
-..+.++|+|+|||-.|-.++...+....
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 36789999999999988877777776543
No 287
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=81.99 E-value=1.3 Score=38.97 Aligned_cols=53 Identities=32% Similarity=0.439 Sum_probs=46.5
Q ss_pred CccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHH
Q psy11640 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLT 231 (552)
Q Consensus 177 ~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~ 231 (552)
|+|+.|++.|+++.++|.+..+ +++...+++ .++..+|++...+.+.++.+-.
T Consensus 1 PliVqpd~~I~v~~~~~~~~~~-~~L~~fae~-~s~~~~~~yrlT~~Sl~~A~~~ 53 (129)
T PF13625_consen 1 PLIVQPDFEILVEPGHPSPADA-WFLARFAEL-KSPDTMHVYRLTPASLWRAASA 53 (129)
T ss_pred CEEECCCCEEEEeCCCCCHHHH-HHHHHHhcc-cccCceEEEEECHHHHHHHHHc
Confidence 6899999999999999999888 899999999 8889999999999888874433
No 288
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.57 E-value=1.4 Score=46.57 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=25.9
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++.+|+|+|||.+|-+++...+.+.+.+..
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 456778999999999998888877776665544
No 289
>PRK07952 DNA replication protein DnaC; Validated
Probab=81.16 E-value=2 Score=42.28 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=26.6
Q ss_pred ccCeecCCCCchhHHHHHHHHhc---CCcEEEEecCchhHHHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
--++.+|+|+|||..+.+++... +.+++++ + +.+|...++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t----~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-T----VADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-E----HHHHHHHHH
Confidence 45677999999999888776543 4455555 3 344555554
No 290
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=80.88 E-value=1.3 Score=45.03 Aligned_cols=29 Identities=10% Similarity=-0.061 Sum_probs=21.8
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
-.+++|||+|||-.|+.++.. .. -+|=|.
T Consensus 7 i~I~GpTasGKS~LAl~LA~~-~~-eIIsaD 35 (300)
T PRK14729 7 VFIFGPTAVGKSNILFHFPKG-KA-EIINVD 35 (300)
T ss_pred EEEECCCccCHHHHHHHHHHh-CC-cEEecc
Confidence 456699999999999998877 32 455555
No 291
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=80.62 E-value=6.8 Score=37.67 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=24.8
Q ss_pred cCeecCCCCchhHHHHHHHHh---cC------CcEEEEecCch
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VR------KRALVLCNSGV 63 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~------~~~LIl~Pt~~ 63 (552)
-.+++|+|+|||..++.++.. .+ ..++++.....
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 356799999999988877653 23 57788777543
No 292
>PRK06835 DNA replication protein DnaC; Validated
Probab=80.31 E-value=2 Score=44.37 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=25.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQ 67 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Q 67 (552)
+--++++|||+|||..+.+++.. .+..+++ .+...|+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y-~t~~~l~~~ 225 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY-RTADELIEI 225 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE-EEHHHHHHH
Confidence 44566799999999988776653 3444544 444555543
No 293
>PRK08181 transposase; Validated
Probab=80.10 E-value=1.7 Score=43.42 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=25.6
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQ 67 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Q 67 (552)
..-++++|+|+|||..+.+++. ..+.+++++. ...|+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQK 148 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHH
Confidence 3467789999999988877653 3455565554 3445543
No 294
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=79.91 E-value=3.4 Score=42.15 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=24.8
Q ss_pred ccCe-ecCCCCchhHHHHHHHHhcCCcEEEEecCc
Q psy11640 29 KKKK-KKRPSAGKSLVGVTACCTVRKRALVLCNSG 62 (552)
Q Consensus 29 ~~~~-vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~ 62 (552)
..+. .+|+|+|||..+-+++...+..++.+-++.
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 3444 799999999988887776666666665543
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=79.77 E-value=6.4 Score=40.38 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=22.9
Q ss_pred eecCCCCchhHHHHHHHHhc---------CCcEEEEecCc
Q psy11640 32 KKKRPSAGKSLVGVTACCTV---------RKRALVLCNSG 62 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~---------~~~~LIl~Pt~ 62 (552)
+++|+|+|||..++.++... +.+++++..-.
T Consensus 107 i~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 107 FYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred EECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56899999999988877642 34677777543
No 296
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=79.56 E-value=3.3 Score=39.97 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=33.0
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
-++.+|||+|||..++.++. ..+.+++++... +...|..+.+..+
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHc
Confidence 35679999999998887764 346678887764 5677777777654
No 297
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.55 E-value=1.7 Score=43.21 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=16.0
Q ss_pred CeecCCCCchhHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~ 49 (552)
++.+|+|+|||.+|-+++.
T Consensus 46 ll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGK 64 (261)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 5789999999999876654
No 298
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=79.42 E-value=6.2 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=23.5
Q ss_pred CeecCCCCchhHHHHHHHHhc---------CCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV---------RKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~---------~~~~LIl~Pt~ 62 (552)
.+++|+|+|||..+..++... ...++++..-.
T Consensus 23 ~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 23 EIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 567999999999988776431 25777777543
No 299
>PLN02840 tRNA dimethylallyltransferase
Probab=79.39 E-value=1.1 Score=47.50 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=19.5
Q ss_pred cCeecCCCCchhHHHHHHHHhcCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
-.+++|||+|||-++..++...+.
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 455589999999999988877654
No 300
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=79.34 E-value=2.1 Score=45.48 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=27.7
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
..+..++.+|+|+|||..+-+++.....+.+.+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 34567888999999999998888777777666654
No 301
>KOG0739|consensus
Probab=79.23 E-value=2.4 Score=42.53 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=37.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
=+.-++..|+|+||+..|-+.+...+ .+.+-+-++.|+.-|.-|-++
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHH
Confidence 34567779999999999988887777 788888889999988766554
No 302
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=79.16 E-value=5.8 Score=45.18 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=69.8
Q ss_pred hcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHH----Hc--CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe
Q psy11640 310 VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAV----KM--NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS 383 (552)
Q Consensus 310 ~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~----~L--~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T 383 (552)
+..++|-++..++++.....|..+||.++.+.....+.. .+ .+..+|+++++.+|.+...+... |+.+|+|.|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~-G~~~vVIGt 303 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR-GEARVVIGT 303 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc-CCceEEEEe
Confidence 456789999999998888899999999997665555444 44 46789999999999999999995 899999998
Q ss_pred -CccccccCCCCCCEEEEe
Q psy11640 384 -KVADTSFDLPEANVLIQI 401 (552)
Q Consensus 384 -~v~~~GlDlp~a~~VI~~ 401 (552)
+++= .=+++...||+-
T Consensus 304 RSAlF--~Pf~~LGLIIvD 320 (730)
T COG1198 304 RSALF--LPFKNLGLIIVD 320 (730)
T ss_pred chhhc--CchhhccEEEEe
Confidence 3332 345566677763
No 303
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=79.14 E-value=3.1 Score=42.98 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=22.2
Q ss_pred ceeecchhHHHHHHHhhhccceeeecceeccccc
Q psy11640 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDD 250 (552)
Q Consensus 217 E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~ 250 (552)
|+++........++...-...++.||+-|.+-|.
T Consensus 359 EaQNLTpheikTiltR~G~GsKIVl~gd~aQiD~ 392 (436)
T COG1875 359 EAQNLTPHELKTILTRAGEGSKIVLTGDPAQIDT 392 (436)
T ss_pred hhhccCHHHHHHHHHhccCCCEEEEcCCHHHcCC
Confidence 4444433444457777777889999998876553
No 304
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=78.99 E-value=4.8 Score=46.31 Aligned_cols=27 Identities=19% Similarity=0.031 Sum_probs=21.2
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRAL 56 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~L 56 (552)
-+.++|||+|||.+|-+++...+.+.+
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 456799999999999888777765544
No 305
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=78.95 E-value=6.9 Score=45.48 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=32.8
Q ss_pred CcccchhhhhhhhhhHHHHHHHHHhhhc-cCeecCCCCchhHHHHHHHHhc
Q psy11640 2 GFRDVISGCKKKKKKKKKKKKKKKKKKK-KKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-|.++|- ++.-++.-++.=.+++-.+ .+...|.|+|||.++..++..+
T Consensus 13 ~f~eiiG--qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 13 TFAEVIG--QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred CHHHhcC--cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3556662 5555555555545556666 5889999999999988877654
No 306
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=78.93 E-value=2.3 Score=46.57 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=28.5
Q ss_pred hccCee-cCCCCchhHHHHHHHH----h-----cCCcEEEEecCchhHH
Q psy11640 28 KKKKKK-KRPSAGKSLVGVTACC----T-----VRKRALVLCNSGVSVE 66 (552)
Q Consensus 28 ~~~~~v-lpTG~GKTl~ai~~i~----~-----~~~~~LIl~Pt~~Lv~ 66 (552)
++-++| +..|+|||-+|+.=++ . ..+++||+.|.++...
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFle 274 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLE 274 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHH
Confidence 344444 9999999999986433 1 2457999999997765
No 307
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=78.80 E-value=4.2 Score=46.83 Aligned_cols=42 Identities=21% Similarity=0.095 Sum_probs=29.5
Q ss_pred hccCeecCCCCchhHHHHHHH---HhcCCcEEEEecCchhHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTAC---CTVRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i---~~~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
+=.++.+++|+|||.+.-+++ ...+.++++++||.-.+....
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence 345778999999997654443 234678999999875554443
No 308
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=78.80 E-value=6.9 Score=40.12 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=22.8
Q ss_pred eecCCCCchhHHHHHHHHh---------cCCcEEEEecCc
Q psy11640 32 KKKRPSAGKSLVGVTACCT---------VRKRALVLCNSG 62 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~---------~~~~~LIl~Pt~ 62 (552)
+++|+|+|||..++.++.. .+.+++++..--
T Consensus 101 I~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 101 VFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred EECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 6799999999988766542 245788887644
No 309
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=78.72 E-value=7.4 Score=42.10 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=31.5
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.+++|+|||..++.++. ..+.++|++.. .+...|+.....++
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC-cCCHHHHHHHHHHc
Confidence 3468999999998887655 33467888876 45677777666554
No 310
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=78.70 E-value=4.2 Score=38.42 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=21.1
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEe
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLC 59 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~ 59 (552)
.+.-++|-|||-.|+.++.+ .+.+++|+=
T Consensus 26 ~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 26 IVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred EEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 34489999999998887653 466777653
No 311
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=78.68 E-value=1.7 Score=44.39 Aligned_cols=25 Identities=8% Similarity=0.052 Sum_probs=20.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
--.+++|||+|||-.|..++...+.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCCC
Confidence 3467799999999999988877653
No 312
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=77.84 E-value=1.4 Score=45.33 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=23.0
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.-+.-+++.|+|+|||..|+++...++.
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4456677899999999999998887764
No 313
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.77 E-value=2.1 Score=47.73 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=31.0
Q ss_pred CcccchhhhhhhhhhHHHHHHHHHh-hhccCeecCCCCchhHHHHHHHHhcC
Q psy11640 2 GFRDVISGCKKKKKKKKKKKKKKKK-KKKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-|.++|- ++.-++..++--++++ ....+...|.|+|||.+|..++..+.
T Consensus 14 sf~dIiG--Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 14 TFAEVAG--QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CHHHhcC--CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3556652 4444444444333333 35566789999999999988876543
No 314
>PLN02165 adenylate isopentenyltransferase
Probab=77.67 E-value=2 Score=44.17 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=20.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
--.+++|||+|||-.++.++...+.
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCC
Confidence 3566799999999999987766553
No 315
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=77.54 E-value=7.9 Score=40.21 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=22.8
Q ss_pred eecCCCCchhHHHHHHHHhc---------CCcEEEEecCc
Q psy11640 32 KKKRPSAGKSLVGVTACCTV---------RKRALVLCNSG 62 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~---------~~~~LIl~Pt~ 62 (552)
+++|+|+|||..++.++... ..+++++..-.
T Consensus 131 I~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 131 AFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 67999999999887765421 35788888743
No 316
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=77.53 E-value=10 Score=38.89 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=19.2
Q ss_pred CeecCCCCchhHHHHHHH-H---hcC-CcEEEEecCchhHHH
Q psy11640 31 KKKKRPSAGKSLVGVTAC-C---TVR-KRALVLCNSGVSVEQ 67 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i-~---~~~-~~~LIl~Pt~~Lv~Q 67 (552)
++.+|.|+|||......+ . ... .+.++++|+..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHH
Confidence 467899999998755433 2 223 245555576654443
No 317
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=77.03 E-value=2.4 Score=44.43 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=25.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
+.-++++|+|+|||..+-+++.....+.+-+.
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 34678899999999999888887776655544
No 318
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.00 E-value=2.1 Score=40.72 Aligned_cols=33 Identities=12% Similarity=-0.004 Sum_probs=21.7
Q ss_pred CeecCCCCchhHHHHHHHHhc----CCcEEEEecCch
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV----RKRALVLCNSGV 63 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~----~~~~LIl~Pt~~ 63 (552)
++++|||+|||-..-+++... .+.++++..+.+
T Consensus 5 lI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E 41 (198)
T cd01131 5 LVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE 41 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc
Confidence 567999999998876655433 234555555444
No 319
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=76.95 E-value=1.9 Score=45.99 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=25.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
+...++++|||+|||..|-+++...+.+.+.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 45678889999999999988877766655443
No 320
>PRK14531 adenylate kinase; Provisional
Probab=76.88 E-value=2.1 Score=40.00 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
++-++++|+|+|||-++-.++...+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR 29 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 456778999999999998888776533
No 321
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=76.81 E-value=2.1 Score=43.25 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=16.0
Q ss_pred ccCeecCCCCchhHHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~ 49 (552)
..++.+|+|+|||.+|-+++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 355779999999998865543
No 322
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=76.60 E-value=3.2 Score=36.36 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=30.4
Q ss_pred cCCCCchhHHHHHHHHhc-----CCc------EEEEecCchhHHHHHHHHHhhh
Q psy11640 34 KRPSAGKSLVGVTACCTV-----RKR------ALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~~~-----~~~------~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
+|||+|||.++-.++..+ +.+ ...=.|...-+.+-+++++.|.
T Consensus 60 G~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 60 GWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred cCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 899999999987766542 111 2344566677888888888776
No 323
>PRK09183 transposase/IS protein; Provisional
Probab=76.39 E-value=2.6 Score=42.00 Aligned_cols=37 Identities=8% Similarity=-0.028 Sum_probs=24.1
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQ 67 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Q 67 (552)
-++++|+|+|||..+.+++. ..+.+++++. ...|+.+
T Consensus 105 v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHH
Confidence 45678999999988877643 3455666654 3345543
No 324
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=76.17 E-value=2.2 Score=39.54 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=24.0
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHH--hcCcccEEEEccCCcc
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWL--QNQEWGIMLLDDGVPV 140 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l--~~~~~~liIvDE~h~~ 140 (552)
..++|+|++|..|.... ....+ ...+-.+||+||||..
T Consensus 118 ~~adivi~~y~yl~~~~--------~~~~~~~~~~~~~ivI~DEAHNL 157 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPS--------IRKSLFGIDLKDNIVIFDEAHNL 157 (174)
T ss_dssp GG-SEEEEETHHHHSHH--------HHHHHCT--CCCEEEEETTGGGC
T ss_pred ccCCEEEeCHHHHhhHH--------HHhhhccccccCcEEEEecccch
Confidence 56899999999885421 11122 1235568999999873
No 325
>PRK08727 hypothetical protein; Validated
Probab=76.06 E-value=3.9 Score=39.93 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=20.8
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
-.+++|+|+|||..+.+++. ..+.+++++.
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46779999999987766543 3445566554
No 326
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=75.96 E-value=3 Score=44.72 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=26.2
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.+..++.+|+|+|||++|-+++.....+.+-+..
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 3456778999999999998888777666655544
No 327
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=75.95 E-value=2.2 Score=42.04 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=27.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVE 66 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~ 66 (552)
--+-.+|||+|||.+|-+++...+.|.|.+-.+ +|+.
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat-~liG 189 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKAT-ELIG 189 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEechH-HHHH
Confidence 345669999999999998888777776655443 4543
No 328
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=75.87 E-value=9.6 Score=38.60 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=51.0
Q ss_pred cCeecCCCCchhHHHHHHHHhc---------CCcE-EEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV---------RKRA-LVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGI 99 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~---------~~~~-LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~I 99 (552)
.++|++||-|||-+.-...... ..|+ +|-+|+..-..-.+..+...++.|... .+
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~~------- 128 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------RD------- 128 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------CC-------
Confidence 5789999999998765555322 1243 456777766666777776655443210 00
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCccc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVA 141 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~ 141 (552)
+...+ .......|......++|+||.|...
T Consensus 129 ---~~~~~---------~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 129 ---RVAKL---------EQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred ---CHHHH---------HHHHHHHHHHcCCcEEEeechHHHh
Confidence 11111 1123456667889999999877643
No 329
>PHA02244 ATPase-like protein
Probab=75.84 E-value=2.6 Score=43.92 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=25.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
..-++++|||+|||..+-+++...+.+.+.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 34567799999999999888888887766654
No 330
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=75.65 E-value=2.4 Score=42.83 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=19.3
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.+++|||+|||..++.++...+.
T Consensus 3 ~i~G~t~~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 3 FIMGPTAVGKSQLAIQLAKKLNA 25 (287)
T ss_pred EEECCCCCCHHHHHHHHHHhCCC
Confidence 46899999999999998876654
No 331
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.36 E-value=2.5 Score=47.34 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=20.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhcC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
+..+..+|.|+|||-.|.+++....
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3448889999999999888776554
No 332
>CHL00181 cbbX CbbX; Provisional
Probab=75.23 E-value=2.8 Score=42.37 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.6
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
.++.+|||+|||.+|-+++.
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 36679999999999887754
No 333
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=75.22 E-value=5 Score=39.06 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=32.7
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
.++.+|+|+|||..+..++. ..+.+++++.-. +-..+..+.+..+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 35679999999999888765 345677777764 4566777777665
No 334
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.15 E-value=14 Score=40.58 Aligned_cols=41 Identities=5% Similarity=-0.041 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHHHHhhhc-cCeecCCCCchhHHHHHHHHhcC
Q psy11640 12 KKKKKKKKKKKKKKKKKK-KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
+.-++.-+.-=..++-.+ .+..+|+|+|||-+|..++....
T Consensus 22 ~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 22 APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 333333333333344444 48889999999998887776543
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.10 E-value=4.4 Score=42.55 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=27.5
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEec-Cc--hhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCN-SG--VSVEQWKHQF 72 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~P-t~--~Lv~Qw~~e~ 72 (552)
+--.+++|+|+|||-++..++. ..+.++.+++- +- .-+.||..-.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHh
Confidence 3456779999999987666554 23445555443 32 2366776543
No 336
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=74.97 E-value=4.4 Score=44.28 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=35.5
Q ss_pred ccCeecCCCCchhHHHHHHHHh---c-CCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT---V-RKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~---~-~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
-.++..|+|+|||+.|+.++.. . +.++|+++- .+-..|+.+.+..+.
T Consensus 23 ~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 23 STLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFG 73 (484)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcC
Confidence 3567899999999999887653 2 568888886 467777877777653
No 337
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.84 E-value=3.7 Score=42.13 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=27.7
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC----cEEEEecCchhHHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK----RALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~----~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
.-++.+|+|+|||..+.+++..... .-.+.++...+..++...+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhh
Confidence 5788899999999998887765421 1233444444555554433
No 338
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=74.74 E-value=4.6 Score=41.50 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=28.0
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQW 68 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw 68 (552)
.+..|+|+|||..++.++. ..+.+++++.+-..+-.+|
T Consensus 59 eI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 59 EIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 3679999999999888765 3467888888765554443
No 339
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=74.71 E-value=2.4 Score=44.08 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=24.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCC--cEEEEecC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRK--RALVLCNS 61 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~--~~LIl~Pt 61 (552)
-+--+++.|||+|||..|++++..++. |...++-+
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 355567799999999999999888764 66666554
No 340
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=74.10 E-value=5.8 Score=38.32 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=28.9
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
-++.+|+|+|||..+..++. ..+.+++++.. .....+..+....
T Consensus 23 ~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 23 VAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHH
Confidence 35679999999998876543 34557777765 4455665555443
No 341
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.07 E-value=12 Score=42.06 Aligned_cols=42 Identities=5% Similarity=0.055 Sum_probs=26.4
Q ss_pred hhhhhhHHHHHHHHHhhhcc-CeecCCCCchhHHHHHHHHhcC
Q psy11640 11 KKKKKKKKKKKKKKKKKKKK-KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++.-++.-+.-=+.++-.+. +..+|.|+|||.++..++..+.
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33334433333333344444 8889999999999888776544
No 342
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=74.05 E-value=16 Score=35.58 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=24.6
Q ss_pred CCCchhHHHHHHHHh---cCCcEEEE-e-cCchhHHHHHHHHH
Q psy11640 36 PSAGKSLVGVTACCT---VRKRALVL-C-NSGVSVEQWKHQFK 73 (552)
Q Consensus 36 TG~GKTl~ai~~i~~---~~~~~LIl-~-Pt~~Lv~Qw~~e~~ 73 (552)
=|+|||-.+++++.. .++++.++ + |.+.|. .|.+...
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~-~W~~~a~ 52 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLA-KWAENAQ 52 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH-HHHHhcc
Confidence 399999888777653 45565554 2 667666 5877554
No 343
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=73.82 E-value=5 Score=41.19 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=25.2
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhH
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSV 65 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv 65 (552)
.+..|+|+|||..++.++. ..+.+++++-.-..+-
T Consensus 59 eI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 59 EIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 96 (321)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence 4679999999998887665 3466788776644333
No 344
>KOG0729|consensus
Probab=73.72 E-value=3.4 Score=40.74 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=28.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
|.-+...|+|+|||++|-+.+.+... +.|=|--++||+.+.
T Consensus 212 kgvllygppgtgktl~aravanrtda-cfirvigselvqkyv 252 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVANRTDA-CFIRVIGSELVQKYV 252 (435)
T ss_pred CceEEeCCCCCchhHHHHHHhcccCc-eEEeehhHHHHHHHh
Confidence 44566699999999998877655443 444455577887544
No 345
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=73.69 E-value=7.6 Score=43.15 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=57.0
Q ss_pred cCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHH-HHHhhhCCCCCcEEEEec----Cccc-----CCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKH-QFKLWSTADDSMICRFTS----EAKD-----KPM 95 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~-e~~~~~~~~~~~I~~~~g----~~~~-----~~~ 95 (552)
-.++.+.-+|||.+++.++. ....++|++.||..++..|.+ .|.....-.+..-..+.. ...+ .+.
T Consensus 36 Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~ 115 (557)
T PF05876_consen 36 VVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFP 115 (557)
T ss_pred EEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecC
Confidence 34568899999998887765 346799999999999999974 455443211111112222 0000 113
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDG 137 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~ 137 (552)
+..+.+....+-. .|.+....++++||.
T Consensus 116 gg~l~~~ga~S~~--------------~l~s~~~r~~~~DEv 143 (557)
T PF05876_consen 116 GGFLYLVGANSPS--------------NLRSRPARYLLLDEV 143 (557)
T ss_pred CCEEEEEeCCCCc--------------ccccCCcCEEEEech
Confidence 3445555544332 245578899999974
No 346
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=73.63 E-value=3 Score=44.40 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=24.3
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALV 57 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LI 57 (552)
+..-++++|||+|||..|-+++...+.+..+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 3467788999999999998888777666543
No 347
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.36 E-value=6.5 Score=45.01 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHhhccCCCeeEEEEe---CccccccCCCC
Q psy11640 358 PTSQSERIQILQNFKLNPKVNTIFVS---KVADTSFDLPE 394 (552)
Q Consensus 358 ~~~~~eR~~il~~F~~~g~~~vLv~T---~v~~~GlDlp~ 394 (552)
.+.+.-+....+.|....+-.+|+++ .+.+.|+|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~L~~h~~~~l~~~~~~~~~ 500 (767)
T PRK14723 461 AMAQAVRAAVRRDVAAACDRYVLALHGTLALKVAGLPGAQ 500 (767)
T ss_pred HHhHhHHHHHHHHHHhcccceEEEeecccccCCCCCCcch
Confidence 44555566677777765555566664 33556666665
No 348
>PRK08118 topology modulation protein; Reviewed
Probab=73.36 E-value=2.8 Score=38.69 Aligned_cols=26 Identities=15% Similarity=-0.031 Sum_probs=20.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
|-.+++|+|+|||-.|-.+....+-+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45677999999998888777666544
No 349
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=73.08 E-value=3.3 Score=37.20 Aligned_cols=34 Identities=9% Similarity=-0.023 Sum_probs=24.4
Q ss_pred eecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQW 68 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw 68 (552)
+++|||+|||.++-.++...+ ...|++. .|+.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~-~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVG-DLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHH-HHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechH-HHHHHH
Confidence 578999999999998887764 4455553 455543
No 350
>PRK08939 primosomal protein DnaI; Reviewed
Probab=72.90 E-value=4.2 Score=41.55 Aligned_cols=40 Identities=13% Similarity=-0.066 Sum_probs=25.3
Q ss_pred ccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
.-.+.+|+|+|||..+.+++.. .+.+++++.- ..++....
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~-~~l~~~lk 200 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF-PEFIRELK 200 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH-HHHHHHHH
Confidence 3446699999999988877653 3455655533 24554433
No 351
>CHL00195 ycf46 Ycf46; Provisional
Probab=72.85 E-value=3.2 Score=45.22 Aligned_cols=33 Identities=18% Similarity=-0.002 Sum_probs=26.7
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++++|+|+|||+.|=+++...+.+.+.+-+
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 456778999999999998888887777776654
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.82 E-value=6.4 Score=42.73 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=15.3
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-..++|||+|||-+...++.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 34679999999987766554
No 353
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=72.81 E-value=5.9 Score=45.58 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=48.1
Q ss_pred hccCeecCCCCchhHHHHHHHHh----c---CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----V---RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~---~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~Iv 100 (552)
...++++.+|||||.+.+.-++. . ...+|+|+-|+..+....+.+.+..+.. ...+.
T Consensus 23 g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~----------------~~~~~ 86 (721)
T PRK11773 23 GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS----------------QGGMW 86 (721)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC----------------CCCCE
Confidence 46788899999999887664442 1 2469999999999988888887765310 12467
Q ss_pred EEccccccc
Q psy11640 101 VTTYSMISH 109 (552)
Q Consensus 101 ItTy~~l~~ 109 (552)
|+|++++..
T Consensus 87 i~TfHs~~~ 95 (721)
T PRK11773 87 VGTFHGLAH 95 (721)
T ss_pred EEcHHHHHH
Confidence 888887754
No 354
>KOG0734|consensus
Probab=72.71 E-value=2.5 Score=45.60 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=28.2
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
=-|.-++|.|+|+|||+.|=+.+...+.|....+-
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 34567888999999999999888888877766554
No 355
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.64 E-value=3.7 Score=40.04 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.5
Q ss_pred CeecCCCCchhHHHHHHHHh---c-CCcEEEEec
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---V-RKRALVLCN 60 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~-~~~~LIl~P 60 (552)
++.+|||+|||..++.++.. . +.++++++.
T Consensus 17 lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 17 IIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 56799999999988776653 2 778888884
No 356
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=72.47 E-value=9.4 Score=44.73 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=20.7
Q ss_pred CeecCCCCchhHHHHHHHHhcC--CcEEEEec
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR--KRALVLCN 60 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~--~~~LIl~P 60 (552)
+.++|||+|||..|-+++.... ...++...
T Consensus 600 lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 5669999999999887765442 33444444
No 357
>KOG0652|consensus
Probab=72.29 E-value=1.7 Score=42.56 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=22.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
-|.-+...|+|+|||+.|-+.++..+...|=|+
T Consensus 205 PKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA 237 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMARACAAQTNATFLKLA 237 (424)
T ss_pred CCceEeeCCCCCcHHHHHHHHHHhccchHHHhc
Confidence 344556699999999999877765554444443
No 358
>PF12846 AAA_10: AAA-like domain
Probab=72.23 E-value=3.6 Score=41.17 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=24.0
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSG 62 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~ 62 (552)
+.+++++||+|||..+..++. ..+.+++|+=|..
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g 39 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKG 39 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 567899999999987766554 3455666664543
No 359
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=72.15 E-value=5.6 Score=45.71 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=47.8
Q ss_pred hccCeecCCCCchhHHHHHHHHh----c---CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----V---RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~---~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~Iv 100 (552)
...++++.+|||||.+.+.-++. . ...+|+|+-|...+....+.+.+..+.. ...+.
T Consensus 18 g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~----------------~~~~~ 81 (715)
T TIGR01075 18 GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS----------------ARGMW 81 (715)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc----------------ccCcE
Confidence 35788899999999887654432 1 2469999999988888888887765310 12467
Q ss_pred EEccccccc
Q psy11640 101 VTTYSMISH 109 (552)
Q Consensus 101 ItTy~~l~~ 109 (552)
|+|++++..
T Consensus 82 i~TfHs~~~ 90 (715)
T TIGR01075 82 IGTFHGLAH 90 (715)
T ss_pred EEcHHHHHH
Confidence 889887754
No 360
>PHA00729 NTP-binding motif containing protein
Probab=72.01 E-value=5.3 Score=38.77 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=18.9
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.-++.+|+|+|||..|.+++...
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999998877643
No 361
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=71.94 E-value=13 Score=31.32 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.0
Q ss_pred eecCCCCchhHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTAC 48 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i 48 (552)
+.+|+|.|||..+-.++
T Consensus 3 i~G~~G~GKS~l~~~l~ 19 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELA 19 (107)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56899999999887655
No 362
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=71.93 E-value=6.2 Score=36.83 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=30.7
Q ss_pred cCeecCCCCchhHHHHHHHHh-------------cCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT-------------VRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~-------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
.++++|+|+|||..++.++.. ...++|++..-. -..++.+.+....
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~-~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLED-SESQIARRLRALL 93 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccC-CHHHHHHHHHHHh
Confidence 567899999999887766542 234677777644 4667888887665
No 363
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=71.91 E-value=7 Score=42.60 Aligned_cols=51 Identities=10% Similarity=-0.044 Sum_probs=35.9
Q ss_pred hhccCeecCCCCchhHHHHHHHH-------hcCCcEEEEecCchhHHHHHHHHHhhhC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC-------TVRKRALVLCNSGVSVEQWKHQFKLWST 77 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~-------~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~ 77 (552)
=++..+..|=|-|||..+.+++. ..+..+++++++..-+..-.+++..+..
T Consensus 22 f~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 22 FREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred EEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 34677889999999976554332 1245688999998777777777766664
No 364
>PLN02748 tRNA dimethylallyltransferase
Probab=71.67 E-value=2.3 Score=45.97 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.5
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
--.+++|||+|||-.|+.++...+
T Consensus 24 ~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 24 VVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 355668999999999998887665
No 365
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=71.66 E-value=3.5 Score=43.73 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=26.7
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.++-++++|||+|||..|-+++...+.+.+-+--
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 3677888999999999999888877766655443
No 366
>KOG1133|consensus
Probab=71.61 E-value=1.8e+02 Score=32.90 Aligned_cols=71 Identities=8% Similarity=0.192 Sum_probs=43.8
Q ss_pred CCeEEEEeccHHHHHHHHHHc---C--------CceEeCCCCHHHHHHHHHhhccC---CCeeEEEEe--CccccccCCC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM---N--------KPYIYGPTSQSERIQILQNFKLN---PKVNTIFVS--KVADTSFDLP 393 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L---~--------~~~i~G~~~~~eR~~il~~F~~~---g~~~vLv~T--~v~~~GlDlp 393 (552)
++-+++|.++-+-+..+.+.+ | ...++-.... -.++++.|... |.--+|++. .-++||||..
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 467899999988887776665 1 1122211111 45677777531 332455553 7789999997
Q ss_pred C--CCEEEEec
Q psy11640 394 E--ANVLIQIS 402 (552)
Q Consensus 394 ~--a~~VI~~~ 402 (552)
+ +.+||++.
T Consensus 707 D~LgRaVvvVG 717 (821)
T KOG1133|consen 707 DDLGRAVVVVG 717 (821)
T ss_pred cccccEEEEee
Confidence 6 56777755
No 367
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=71.42 E-value=4.6 Score=35.52 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=18.0
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++++|+|+|||-.+-.+....+
T Consensus 3 i~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEESTTSSHHHHHHHHHHHST
T ss_pred EEECCCCCCHHHHHHHHHHHCC
Confidence 4679999999998887776666
No 368
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=71.37 E-value=3.7 Score=37.31 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=18.0
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++++|+|+|||..+-.+....+
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhcC
Confidence 4679999999988887776665
No 369
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=71.32 E-value=7.5 Score=37.21 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=23.3
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEec
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCN 60 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~P 60 (552)
.+.+|+|+|||..++.++.. .+.+++++..
T Consensus 23 ~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 23 QVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 46799999999998887753 3567888754
No 370
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=71.29 E-value=20 Score=37.84 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=51.7
Q ss_pred eecCCCCchhHHHHHHHHhc--CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEccccccc
Q psy11640 32 KKKRPSAGKSLVGVTACCTV--RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMISH 109 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~--~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l~~ 109 (552)
+-.-+|.||+-..+-+++.. .+++|+|+- -+.+.||+-...+.. ++. .++.+.....+
T Consensus 98 IgGdPGIGKSTLLLQva~~lA~~~~vLYVsG-EES~~QiklRA~RL~-~~~----------------~~l~l~aEt~~-- 157 (456)
T COG1066 98 IGGDPGIGKSTLLLQVAARLAKRGKVLYVSG-EESLQQIKLRADRLG-LPT----------------NNLYLLAETNL-- 157 (456)
T ss_pred EccCCCCCHHHHHHHHHHHHHhcCcEEEEeC-CcCHHHHHHHHHHhC-CCc----------------cceEEehhcCH--
Confidence 33679999996655554432 338999888 578899999988764 221 22444444433
Q ss_pred ccccchhHHHHHHHHhcCcccEEEEcc
Q psy11640 110 TQKRSWEADQTMQWLQNQEWGIMLLDD 136 (552)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~liIvDE 136 (552)
+.+...+...+++++|+|-
T Consensus 158 --------e~I~~~l~~~~p~lvVIDS 176 (456)
T COG1066 158 --------EDIIAELEQEKPDLVVIDS 176 (456)
T ss_pred --------HHHHHHHHhcCCCEEEEec
Confidence 3456667778999999993
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=71.19 E-value=6.2 Score=43.11 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=35.4
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
++..|||+|||..++.++. ..+.++++++- -+...|.....+.+.
T Consensus 267 li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 267 LATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 5679999999998887765 44668888775 678889988887653
No 372
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=71.12 E-value=4 Score=44.67 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=22.7
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
..+..++.+|+|+|||..+-+++.....+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 34567888999999999988887765443
No 373
>PRK08233 hypothetical protein; Provisional
Probab=71.07 E-value=4.7 Score=37.17 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=20.4
Q ss_pred ecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 33 KKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 33 vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.+|+|+|||-+|-.++.......++...
T Consensus 9 ~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 9 AAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred ECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 4899999999998888776544444443
No 374
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=70.94 E-value=3.8 Score=38.01 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=23.8
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQ 67 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Q 67 (552)
++++|+|+|||.+|-.++...+ +..|.. ..++..
T Consensus 3 ~i~G~pGsGKst~a~~la~~~~--~~~is~-~d~lr~ 36 (183)
T TIGR01359 3 FVLGGPGSGKGTQCAKIVENFG--FTHLSA-GDLLRA 36 (183)
T ss_pred EEECCCCCCHHHHHHHHHHHcC--CeEEEC-ChHHHH
Confidence 4678999999999988877665 344444 345543
No 375
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.74 E-value=14 Score=40.12 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=19.6
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+.++|+|+|||-+|..++....
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 58899999999999988876554
No 376
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=70.68 E-value=6.9 Score=37.71 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=23.9
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecC
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNS 61 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt 61 (552)
.+++|+|+|||..++.++. ..+.+++++.--
T Consensus 27 ~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 27 QIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5679999999999888775 346677777654
No 377
>PRK14530 adenylate kinase; Provisional
Probab=70.67 E-value=3.6 Score=39.52 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=20.4
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
+-.+++|+|+|||-++-.++...+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567789999999999888777653
No 378
>PRK00131 aroK shikimate kinase; Reviewed
Probab=70.59 E-value=4 Score=37.25 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=21.8
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRAL 56 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~L 56 (552)
.-.+++|+|+|||.+|-.++...+.+.+
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 3456799999999999988887765433
No 379
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=70.57 E-value=18 Score=37.15 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=27.8
Q ss_pred eecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
+..|+|+|||..++.+++. .+..++++-+...|-..|...+
T Consensus 58 i~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 58 IYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT
T ss_pred EeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc
Confidence 5689999999988877763 4667888888777766665544
No 380
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=70.40 E-value=4.6 Score=45.61 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=19.5
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+.++|+|+|||.+|..++..+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 358899999999999888776544
No 381
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.37 E-value=13 Score=40.31 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=19.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+.++|+|+|||..|-.++....
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999888776543
No 382
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=70.37 E-value=23 Score=39.65 Aligned_cols=87 Identities=10% Similarity=0.152 Sum_probs=67.0
Q ss_pred CchhHH-HHHHHHHHHhhcCCeEEEEeccH----HHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEE
Q psy11640 312 NPNKYR-ATQYLIAYHERRGDKTIVFSDNV----FALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381 (552)
Q Consensus 312 ~~~K~~-~l~~Ll~~~~~~g~kvIVF~~~~----~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv 381 (552)
.++|-- ++..++... ..|.++.+.+++- .|.+.+...| ++..++|++...+|.+++....+ |+++++|
T Consensus 293 GSGKTvVA~laml~ai-~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~-G~~~ivV 370 (677)
T COG1200 293 GSGKTVVALLAMLAAI-EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLAS-GEIDIVV 370 (677)
T ss_pred CCCHHHHHHHHHHHHH-HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhC-CCCCEEE
Confidence 345643 333344333 4788999999984 4555566666 36789999999999999999995 9999999
Q ss_pred Ee-CccccccCCCCCCEEEE
Q psy11640 382 VS-KVADTSFDLPEANVLIQ 400 (552)
Q Consensus 382 ~T-~v~~~GlDlp~a~~VI~ 400 (552)
.| ...-+.++..+.-.||+
T Consensus 371 GTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 371 GTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EcchhhhcceeecceeEEEE
Confidence 99 77888999998888876
No 383
>PRK07261 topology modulation protein; Provisional
Probab=70.36 E-value=3.9 Score=37.85 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=19.2
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
|-.+++|+|+|||-.|-.+....+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34678999999998887766554433
No 384
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=70.34 E-value=3.3 Score=46.60 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=30.8
Q ss_pred cccchhhhhhhhhhHHHHHHHHHhhhcc-CeecCCCCchhHHHHHHHHhcC
Q psy11640 3 FRDVISGCKKKKKKKKKKKKKKKKKKKK-KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
|.++| .++..++.-++.=..++-.+. +..+|.|+|||.+|-.++..+.
T Consensus 15 f~div--GQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 15 FAEVV--GQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred HHHhc--CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 55555 255555544444444444443 7889999999999887765443
No 385
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.25 E-value=3.9 Score=42.83 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=31.4
Q ss_pred cccchhhhhhhhhhHHHHHHHHHhhhc-cCeecCCCCchhHHHHHHHHhcC
Q psy11640 3 FRDVISGCKKKKKKKKKKKKKKKKKKK-KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
|.++| .++..++..++--+.++-.+ .+..+|+|+|||..|-.++....
T Consensus 15 ~~~ii--Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 15 FRDII--GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hhhcc--ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 55665 45555555444433333344 47899999999999888776554
No 386
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=70.24 E-value=3.7 Score=47.33 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=27.7
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
.+..++.+|+|+|||..|-+++...+.+.+.+-++
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 34467789999999999998888888777666653
No 387
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=70.11 E-value=3.7 Score=38.11 Aligned_cols=36 Identities=11% Similarity=0.009 Sum_probs=25.5
Q ss_pred cCeecCCCCchhHHHHHHHHhcC---CcEEEEecCchhH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR---KRALVLCNSGVSV 65 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~---~~~LIl~Pt~~Lv 65 (552)
-+.+.|||+|||..|-+++.... ...++.+.-..+.
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 45679999999998887776555 3566666655443
No 388
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=69.90 E-value=7.6 Score=38.93 Aligned_cols=32 Identities=13% Similarity=-0.045 Sum_probs=21.8
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
+--..+.|+|+|||-++..++. ..+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3444669999999988776654 3345666665
No 389
>PRK06893 DNA replication initiation factor; Validated
Probab=69.84 E-value=4.9 Score=39.10 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=20.0
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEe
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLC 59 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~ 59 (552)
.+++|+|+|||..+.+++.. .+.+++++.
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 68899999999887776643 234454433
No 390
>PF13479 AAA_24: AAA domain
Probab=69.48 E-value=2.8 Score=40.36 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
++-+.++.+|+|+|||..+..+ .++|+|-.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~-----~k~l~id~ 31 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL-----PKPLFIDT 31 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC-----CCeEEEEe
Confidence 4556788899999999877655 55555544
No 391
>KOG2028|consensus
Probab=69.47 E-value=7.8 Score=40.06 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=33.3
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCc---EEEEecCchhHHHHHHHHH
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKR---ALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~---~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
+=.-++.|+|+|+|||-.|=.++...+.+ .+=+.-|.+-+..-++.|+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHH
Confidence 33457899999999999888887776665 5555555555555555554
No 392
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=69.44 E-value=8.1 Score=43.97 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=47.8
Q ss_pred hccCeecCCCCchhHHHHHHHHh----c---CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----V---RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~---~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~Iv 100 (552)
...++++++|+|||.+.+.-+.. . ...+|+|+.|...+.+..+.+.+.++.. ....|.
T Consensus 15 ~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~---------------~~~~v~ 79 (664)
T TIGR01074 15 GPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG---------------EARGLT 79 (664)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc---------------ccCCeE
Confidence 45788899999999887664432 1 2458999999988888888887665310 123478
Q ss_pred EEccccccc
Q psy11640 101 VTTYSMISH 109 (552)
Q Consensus 101 ItTy~~l~~ 109 (552)
|.|++.+..
T Consensus 80 v~TfHs~a~ 88 (664)
T TIGR01074 80 ISTFHTLGL 88 (664)
T ss_pred EEeHHHHHH
Confidence 889888854
No 393
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=69.38 E-value=9.7 Score=39.88 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=35.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc---CCcEEEEecCchhHHHH--HHHHHhhhCCC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV---RKRALVLCNSGVSVEQW--KHQFKLWSTAD 79 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl~Pt~~Lv~Qw--~~e~~~~~~~~ 79 (552)
....-+.+|-|+|||.+.-+++... +..+++++||-..+... -..+..+++++
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~ 79 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP 79 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence 3444567999999998866655433 45799999988655544 33455555543
No 394
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=69.26 E-value=3.4 Score=41.82 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
..++|+|++|..|....-+ ..+.. .....++|+||||+.
T Consensus 210 ~~Adivi~ny~yll~~~~r-----~~~~~--~l~~~~lIiDEAHnL 248 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIR-----QALSI--ELKDSIVIFDEAHNL 248 (289)
T ss_pred hcCCEEEECHHHHhcHHHH-----HHhcc--cccccEEEEeCccCh
Confidence 5689999999988642110 11111 124679999999984
No 395
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=69.26 E-value=3.4 Score=41.82 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
..++|+|++|..|....-+ ..+.. .....++|+||||+.
T Consensus 210 ~~Adivi~ny~yll~~~~r-----~~~~~--~l~~~~lIiDEAHnL 248 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIR-----QALSI--ELKDSIVIFDEAHNL 248 (289)
T ss_pred hcCCEEEECHHHHhcHHHH-----HHhcc--cccccEEEEeCccCh
Confidence 5689999999988642110 11111 124679999999984
No 396
>PRK13947 shikimate kinase; Provisional
Probab=69.10 E-value=4.5 Score=37.05 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=20.7
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
++++|+|+|||.+|-.++...+.+.
T Consensus 5 ~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 5668999999999998888777654
No 397
>PRK08084 DNA replication initiation factor; Provisional
Probab=69.10 E-value=7 Score=38.17 Aligned_cols=22 Identities=27% Similarity=0.216 Sum_probs=17.0
Q ss_pred hccCeecCCCCchhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
....+++|+|+|||..+.+++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999987766553
No 398
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=68.83 E-value=21 Score=40.15 Aligned_cols=49 Identities=8% Similarity=-0.083 Sum_probs=37.0
Q ss_pred hhhccCeecCCCCchhHHHHHHHH-----hcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC-----TVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~-----~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
|||-.+...|==.|||......++ ..+..+++.+|.....+...+++..
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~ 306 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGA 306 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 456778889999999975443322 2477899999999888888777765
No 399
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=68.70 E-value=4.9 Score=40.89 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=27.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVS 64 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~L 64 (552)
++--++++|||+|||-.+-+++... ..+++++=.+.++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 3456788999999998876666543 3567777666665
No 400
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=68.65 E-value=17 Score=40.83 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=20.5
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-+..+..+|.|+|||..|..++..+.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhC
Confidence 34578889999999999988776543
No 401
>PRK14532 adenylate kinase; Provisional
Probab=68.45 E-value=4.5 Score=37.77 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=23.4
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVE 66 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~ 66 (552)
++++|+|+|||-+|-.++...+ ...|.+.. ++.
T Consensus 4 ~~~G~pGsGKsT~a~~la~~~g--~~~is~~d-~lr 36 (188)
T PRK14532 4 ILFGPPAAGKGTQAKRLVEERG--MVQLSTGD-MLR 36 (188)
T ss_pred EEECCCCCCHHHHHHHHHHHcC--CeEEeCcH-HHH
Confidence 5679999999999988877665 34455543 443
No 402
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=68.39 E-value=4.5 Score=37.79 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=18.3
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++.+|+|+|||.++-.++...+
T Consensus 3 ~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 3 LLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEECCCCCCHHHHHHHHHHHcC
Confidence 5678999999999988777655
No 403
>KOG0733|consensus
Probab=68.34 E-value=5.5 Score=43.84 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=30.6
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
-+.++|+|+||||.|=+++...+-..+=|== -+|++-|.-|=
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NFisVKG-PELlNkYVGES 589 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGANFISVKG-PELLNKYVGES 589 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCceEeecC-HHHHHHHhhhH
Confidence 4678999999999999888777665554333 36887776553
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=68.14 E-value=8.4 Score=41.40 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=22.4
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~P 60 (552)
.--++++|+|+|||.++..++.. .+.++++++.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34567799999999888766543 3445655544
No 405
>PRK10865 protein disaggregation chaperone; Provisional
Probab=68.05 E-value=15 Score=43.20 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred CeecCCCCchhHHHHHHHHhc--CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcccccc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV--RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMIS 108 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~--~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l~ 108 (552)
+.++|||+|||.+|-++.... ....+|.+...+... .....++.+.++.-++.-.++.
T Consensus 602 Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~--~~~~~~LiG~~pgy~g~~~~g~------------------ 661 (857)
T PRK10865 602 LFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME--KHSVSRLVGAPPGYVGYEEGGY------------------ 661 (857)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh--hhhHHHHhCCCCcccccchhHH------------------
Q ss_pred cccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCCcccc
Q psy11640 109 HTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 188 (552)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~ 188 (552)
..+.+.....++|++|
T Consensus 662 -----------l~~~v~~~p~~vLllD----------------------------------------------------- 677 (857)
T PRK10865 662 -----------LTEAVRRRPYSVILLD----------------------------------------------------- 677 (857)
T ss_pred -----------HHHHHHhCCCCeEEEe-----------------------------------------------------
Q ss_pred ccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh
Q psy11640 189 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ 234 (552)
Q Consensus 189 ~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~ 234 (552)
|+...+...+..++..+.
T Consensus 678 ----------------------------Eieka~~~v~~~Ll~ile 695 (857)
T PRK10865 678 ----------------------------EVEKAHPDVFNILLQVLD 695 (857)
T ss_pred ----------------------------ehhhCCHHHHHHHHHHHh
No 406
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=67.95 E-value=23 Score=35.62 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=27.7
Q ss_pred eecCCCCchhHHHHHHHHhc---CCcEEEEecCchhHHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~---~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
+.+|.|+|||-+++.+++.. +..++++-.-..|--+-..++
T Consensus 65 iyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l 108 (279)
T COG0468 65 IYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQL 108 (279)
T ss_pred EecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 35899999999998887643 446777776665654434443
No 407
>PRK03839 putative kinase; Provisional
Probab=67.91 E-value=4.7 Score=37.39 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=20.2
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
.+++++|+|||-++-.++...+-+.
T Consensus 4 ~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 4 AITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcE
Confidence 4678999999999988887776544
No 408
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=67.66 E-value=5.7 Score=43.03 Aligned_cols=56 Identities=13% Similarity=-0.063 Sum_probs=38.4
Q ss_pred hccCeecCCCCchhHHHHH-HHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVT-ACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFT 87 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~-~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~ 87 (552)
.+.++++|||+|||...+. .+......++|.=|.-+|........++.+ ..|.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G----~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRG----YKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCC----CEEEEee
Confidence 3578999999999976543 333455689999999998876666555443 2455544
No 409
>CHL00206 ycf2 Ycf2; Provisional
Probab=67.03 E-value=4.1 Score=50.65 Aligned_cols=42 Identities=5% Similarity=-0.099 Sum_probs=33.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
-|.-++++|+|+|||+.|=+++...+.|.+-|..+ .++..|.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs-~fl~~~~ 1671 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLN-KFLDNKP 1671 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHH-HHhhccc
Confidence 45667889999999999999999999998877774 4666553
No 410
>PHA02774 E1; Provisional
Probab=66.96 E-value=5.6 Score=43.90 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=28.2
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
||+--++++|+|+|||..|.+++..++++++-.+..
T Consensus 433 Kknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 433 KKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 556667789999999999999998776666655554
No 411
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=66.89 E-value=5.7 Score=44.25 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=28.9
Q ss_pred CcccchhhhhhhhhhHHHHHHHHHhhh-ccCeecCCCCchhHHHHHHHHhc
Q psy11640 2 GFRDVISGCKKKKKKKKKKKKKKKKKK-KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-|.++|- ++..++....-=.+.+-. ..+..+|.|+|||..|..++...
T Consensus 14 ~F~dIIG--Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 14 NFKQIIG--QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CHHHhcC--cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3555552 344444333332233333 46789999999999998877654
No 412
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=66.84 E-value=5 Score=37.14 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=20.5
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
+-.+++|+|+|||-++-.++...+.+
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~ 31 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNME 31 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCc
Confidence 45567899999999998888776544
No 413
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=66.67 E-value=5.9 Score=40.71 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=26.0
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVS 64 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~L 64 (552)
.++.-++++|||+|||-..-+++... ..+++++-++.+|
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34567888999999996665555431 3456666666655
No 414
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=66.67 E-value=5 Score=35.60 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=16.8
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+++|+|+|||-++-.++....
T Consensus 3 ~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 3 VLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999987776665543
No 415
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=66.62 E-value=5 Score=38.80 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=27.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVS 64 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~L 64 (552)
.++..+++.||+|||..+..++.. .+.+++|+=|.-+=
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcc
Confidence 468889999999999887766643 34567777776543
No 416
>PRK06762 hypothetical protein; Provisional
Probab=66.53 E-value=6 Score=36.04 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=21.6
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
.+++++|+|||-+|-.+....+..+.++.
T Consensus 6 ~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 6 IIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 45699999999999888776654455554
No 417
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=66.46 E-value=5.4 Score=41.05 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=21.7
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
...++++|+|+|||..+..++...+..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 457888999999999998877766543
No 418
>PLN03025 replication factor C subunit; Provisional
Probab=66.40 E-value=4.6 Score=41.46 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=20.8
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
+-...+..+|+|+|||..+.+++...
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33457889999999999988877654
No 419
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.30 E-value=5.7 Score=40.25 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=19.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
...++++|+|+|||..+.+++...+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3468889999999988887766544
No 420
>KOG1533|consensus
Probab=66.25 E-value=5.2 Score=38.83 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=17.8
Q ss_pred cCeecCCCCchhHHH--HH-HHHhcCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVG--VT-ACCTVRKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~a--i~-~i~~~~~~~LIl 58 (552)
+++++|||+|||-=. .. ++...++++.||
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV 36 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV 36 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEE
Confidence 578899999999532 22 233455554443
No 421
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=66.00 E-value=6.7 Score=37.65 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.5
Q ss_pred hhccCeecCCCCchhHHHHHHHHh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
..--++++|+|+|||..+.+++..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344567799999999998877654
No 422
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=65.98 E-value=32 Score=41.02 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=77.6
Q ss_pred hcCCeEEEEeccHHHHHH----HHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-CccccccCCCCCCE
Q psy11640 328 RRGDKTIVFSDNVFALKH----YAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANV 397 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~----l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~~GlDlp~a~~ 397 (552)
..|.+|.|.++++--++. +.+.+ ++..+.-=.+.+|...+++...+ |+++++|.| ++++.+|-.-+.-.
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~-G~vDIvIGTHrLL~kdv~FkdLGL 719 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAE-GKVDIVIGTHRLLSKDVKFKDLGL 719 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhc-CCccEEEechHhhCCCcEEecCCe
Confidence 467899999999765544 44444 34556666789999999999995 999999999 99999999999988
Q ss_pred EEEeccCCCChhhHHHHhhhcc--ccCCCCCCCceeEEEEEEecC---CchhhHHHHHH
Q psy11640 398 LIQISSHGGSRRQEAQRLGRIL--RAKKGAIAEEYNAFFYTLVSQ---DTMEMSYSRKR 451 (552)
Q Consensus 398 VI~~~~~~~s~~q~~Qr~GRi~--R~~~~k~~~~~~v~vy~lvs~---~t~e~~~~~~r 451 (552)
||+ | ++||.|=-+ +.++=+. +|.|.+|-+. -|..|.++--|
T Consensus 720 lII-D--------EEqRFGVk~KEkLK~Lr~----~VDvLTLSATPIPRTL~Msm~GiR 765 (1139)
T COG1197 720 LII-D--------EEQRFGVKHKEKLKELRA----NVDVLTLSATPIPRTLNMSLSGIR 765 (1139)
T ss_pred EEE-e--------chhhcCccHHHHHHHHhc----cCcEEEeeCCCCcchHHHHHhcch
Confidence 875 4 467777221 0111111 4677777765 36666665433
No 423
>PTZ00088 adenylate kinase 1; Provisional
Probab=65.89 E-value=5.4 Score=38.93 Aligned_cols=35 Identities=14% Similarity=-0.003 Sum_probs=24.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVE 66 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~ 66 (552)
+-++++|+|+|||.+|-.++...+- .+|.. -.|+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~--~~is~-gdllr 42 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENL--KHINM-GNILR 42 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEEC-ChHHH
Confidence 3567799999999999988776653 33333 44553
No 424
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=65.84 E-value=5.7 Score=35.01 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=19.9
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
.++.|+|+|||-+|-.++...+-+.
T Consensus 3 ~i~G~~GsGKst~a~~la~~~~~~~ 27 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPY 27 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCce
Confidence 3678999999999988887766553
No 425
>PRK14528 adenylate kinase; Provisional
Probab=65.78 E-value=5.3 Score=37.48 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=20.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
+-++.+|+|+|||.++-.++...+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~ 28 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34677999999999988877666544
No 426
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=65.44 E-value=5.9 Score=40.71 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=26.8
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++..|+|+|||..+-.++...+.+.+-|--
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~ 97 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNL 97 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEe
Confidence 467888999999999999888888877664443
No 427
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=65.09 E-value=5.7 Score=37.96 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=18.4
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++++|+|+|||.+|-.++...+
T Consensus 3 ~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 3 VLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEECCCCCCHHHHHHHHHHHcC
Confidence 5678999999999988876665
No 428
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=65.02 E-value=7.1 Score=40.11 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=21.3
Q ss_pred ccCeecCCCCchhHHHHHHHHh---cCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT---VRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~ 59 (552)
--.+++|+|+|||-++..++.. .+++++++.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4456799999999877665542 345676665
No 429
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=64.98 E-value=4.5 Score=44.27 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.+..++.+|+|+|||..+-+++...+.+.+.+..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 3457788999999999998888777776555443
No 430
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=64.95 E-value=22 Score=43.14 Aligned_cols=72 Identities=8% Similarity=0.216 Sum_probs=52.5
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc-------CC-----ceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC-ccccccC-CC
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM-------NK-----PYIYGPTSQSERIQILQNFKLNPKVNTIFVSK-VADTSFD-LP 393 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L-------~~-----~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~-v~~~GlD-lp 393 (552)
..+.++||.++++..+..+...+ ++ ..+||+++..++...++.+.+ +..+|+|+|+ -+-.-++ +.
T Consensus 119 ~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~-~~~dIlV~Tp~rL~~~~~~l~ 197 (1171)
T TIGR01054 119 KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN-GDFDILITTTMFLSKNYDELG 197 (1171)
T ss_pred hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHHHHHHHhc
Confidence 35789999999998888776554 22 247899999999999999985 7899999983 2222222 12
Q ss_pred -CCCEEEE
Q psy11640 394 -EANVLIQ 400 (552)
Q Consensus 394 -~a~~VI~ 400 (552)
.++++|+
T Consensus 198 ~~~~~iVv 205 (1171)
T TIGR01054 198 PKFDFIFV 205 (1171)
T ss_pred CCCCEEEE
Confidence 5777777
No 431
>PRK02496 adk adenylate kinase; Provisional
Probab=64.71 E-value=5.7 Score=36.95 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.8
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
|-++++|+|+|||.++-.++...+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567799999999998888766653
No 432
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=64.39 E-value=5.6 Score=41.93 Aligned_cols=54 Identities=17% Similarity=0.043 Sum_probs=35.1
Q ss_pred cCeecCCCCchhHHHHH-HHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVT-ACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFT 87 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~-~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~ 87 (552)
-++++|||+|||...+. .+.....+++|+=|.-++........++.. ..|.++.
T Consensus 2 ~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G----~~V~v~n 56 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALG----RKVFVFD 56 (384)
T ss_pred eeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcC----CeEEEEc
Confidence 47899999999976442 233456788888888888765444444322 3455554
No 433
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=64.25 E-value=8 Score=44.59 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.0
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHh
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
+.++-.++++|+|+|||.++-.++..
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 35677899999999999987776654
No 434
>PRK05642 DNA replication initiation factor; Validated
Probab=64.03 E-value=8 Score=37.75 Aligned_cols=33 Identities=18% Similarity=0.067 Sum_probs=21.3
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
+--.+++|+|+|||..+.+++. ..+.+++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 3446789999999987665543 23445555443
No 435
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=63.99 E-value=13 Score=44.12 Aligned_cols=38 Identities=16% Similarity=-0.045 Sum_probs=26.9
Q ss_pred hccCeecCCCCchhHHHHHHH---HhcCCcEEEEecCchhH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTAC---CTVRKRALVLCNSGVSV 65 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i---~~~~~~~LIl~Pt~~Lv 65 (552)
.-.+++++.|+|||.+.-++. ...+.+++.++||--.+
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 356788999999997633222 23467899999987544
No 436
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=63.90 E-value=13 Score=37.94 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=23.7
Q ss_pred CeecCCCCchhHHHHHHHHhc---------CCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV---------RKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~---------~~~~LIl~Pt~ 62 (552)
.+++|+|+|||..++.++... ++++++|..-.
T Consensus 99 ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 99 EVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 467999999999988776542 34788877544
No 437
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=63.82 E-value=6.2 Score=40.98 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=26.5
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc--CCcEEEEecCchh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV--RKRALVLCNSGVS 64 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~--~~~~LIl~Pt~~L 64 (552)
++--++++|||+|||-..-+++... ..+++.+=++.+|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 4456778999999997766666543 3466666676655
No 438
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=63.81 E-value=6.9 Score=38.85 Aligned_cols=43 Identities=9% Similarity=-0.088 Sum_probs=28.8
Q ss_pred cCeecCCCCchhHHHHHHHHh---c-CCcEEEEecCchhHHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---V-RKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~-~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
.++.+|||+|||..++.++.. . +.+++++.- ..-..++...+.
T Consensus 33 ~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~-E~~~~~~~~r~~ 79 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALDLITQHGVRVGTISL-EEPVVRTARRLL 79 (271)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc-ccCHHHHHHHHH
Confidence 456799999999887766543 2 567888765 334555555554
No 439
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=63.71 E-value=18 Score=42.55 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred CeecCCCCchhHHHHHHHHhcC--CcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcccccc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR--KRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMIS 108 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~--~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l~ 108 (552)
+.++|||+|||.+|-++..... ...++.+..++... .....++.+.++.-++.-.++.
T Consensus 599 Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~--~~~~~~l~g~~~g~~g~~~~g~------------------ 658 (852)
T TIGR03346 599 LFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME--KHSVARLIGAPPGYVGYEEGGQ------------------ 658 (852)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc--cchHHHhcCCCCCccCcccccH------------------
Q ss_pred cccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCCcccc
Q psy11640 109 HTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 188 (552)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~ 188 (552)
..+.+....+.+|++|
T Consensus 659 -----------l~~~v~~~p~~vlllD----------------------------------------------------- 674 (852)
T TIGR03346 659 -----------LTEAVRRKPYSVVLFD----------------------------------------------------- 674 (852)
T ss_pred -----------HHHHHHcCCCcEEEEe-----------------------------------------------------
Q ss_pred ccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh
Q psy11640 189 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ 234 (552)
Q Consensus 189 ~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~ 234 (552)
|+..++...+..++..+.
T Consensus 675 ----------------------------eieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 675 ----------------------------EVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred ----------------------------ccccCCHHHHHHHHHHHh
No 440
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=63.56 E-value=5.5 Score=42.33 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=25.4
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
.++-+++.|||+|||..|-.++...+.+++.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~v 81 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheee
Confidence 46778889999999999988887776665544
No 441
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=63.44 E-value=6.6 Score=35.96 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=26.3
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQ 71 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e 71 (552)
.+.+|+|+|||-++..++...+-+. +.+-.+..|.+++
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl~~---vsaG~iFR~~A~e 41 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGLKL---VSAGTIFREMARE 41 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhCCce---eeccHHHHHHHHH
Confidence 3568999999999998888777663 2333345555554
No 442
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=63.36 E-value=24 Score=40.71 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=25.3
Q ss_pred eecCCCCchhHHHHHHHH---hcCCcEEEEecCchhH
Q psy11640 32 KKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSV 65 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv 65 (552)
+..|+|+|||..++.+++ ..+.+++++-+-..+-
T Consensus 65 I~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~ 101 (790)
T PRK09519 65 IYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD 101 (790)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh
Confidence 568999999998876654 4567888877765554
No 443
>KOG0736|consensus
Probab=63.29 E-value=4.1 Score=45.93 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=19.9
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
|...-+..+|+|+|||++|=+.+...
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHhhc
Confidence 34455667999999999998877543
No 444
>KOG0728|consensus
Probab=63.28 E-value=8.8 Score=37.62 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=28.9
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKH 70 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~ 70 (552)
|..++..|||+|||+.|-+.+.+... .+|=|.-++|++.+.-
T Consensus 182 KGvlLygppgtGktLlaraVahht~c-~firvsgselvqk~ig 223 (404)
T KOG0728|consen 182 KGVLLYGPPGTGKTLLARAVAHHTDC-TFIRVSGSELVQKYIG 223 (404)
T ss_pred cceEEecCCCCchhHHHHHHHhhcce-EEEEechHHHHHHHhh
Confidence 34566799999999998776655444 4455555788865443
No 445
>PRK13949 shikimate kinase; Provisional
Probab=63.24 E-value=6.6 Score=36.24 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=20.7
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
+-.+++|+|+|||.++-.++...+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34567899999999998888777644
No 446
>KOG0737|consensus
Probab=62.94 E-value=8.8 Score=39.70 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=33.9
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
+.-+...|+|+|||..|-+.+.+.+.+.+=|.=+ .|..-|.-|-++..
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s-~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 128 KGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS-NLTSKWFGEAQKLV 175 (386)
T ss_pred ccceecCCCCchHHHHHHHHHHHcCCCcceeecc-ccchhhHHHHHHHH
Confidence 3344558999999999999988887776544443 46667776665543
No 447
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=62.69 E-value=6.8 Score=36.60 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=19.2
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
|-++++|+|+|||-+|-.+....+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999988877643
No 448
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=62.68 E-value=8.3 Score=41.63 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=27.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
+--.+.+|+|+|||..+-+++... +..++++ +...+...+...+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHH
Confidence 345678999999999877766533 2344444 4455555444443
No 449
>KOG1131|consensus
Probab=62.51 E-value=11 Score=40.76 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=46.3
Q ss_pred ceEeCCCCHHHHHHHHHhhcc---CCCeeEEEEe--CccccccCCCCCC--EEEEeccCCC-------------------
Q psy11640 353 PYIYGPTSQSERIQILQNFKL---NPKVNTIFVS--KVADTSFDLPEAN--VLIQISSHGG------------------- 406 (552)
Q Consensus 353 ~~i~G~~~~~eR~~il~~F~~---~g~~~vLv~T--~v~~~GlDlp~a~--~VI~~~~~~~------------------- 406 (552)
.+.-+.-...|-.-.+..++. +|.--||++. .-..||+|...-- +||++. .|.
T Consensus 564 L~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hhyGR~ViM~g-IP~qytesriLkarle~Lrd~~ 642 (755)
T KOG1131|consen 564 LLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHHYGREVIMEG-IPYQYTESRILKARLEYLRDQF 642 (755)
T ss_pred eEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccccCceEEEEe-ccchhhHHHHHHHHHHHHHHHh
Confidence 445566566666777777763 3444566664 5567999998776 888744 121
Q ss_pred -----------ChhhHHHHhhhccccCC
Q psy11640 407 -----------SRRQEAQRLGRILRAKK 423 (552)
Q Consensus 407 -----------s~~q~~Qr~GRi~R~~~ 423 (552)
-.+...|-+||++|.++
T Consensus 643 ~irE~dflTFDAmRhaAQC~GrvLr~K~ 670 (755)
T KOG1131|consen 643 QIRENDFLTFDAMRHAAQCLGRVLRGKT 670 (755)
T ss_pred cccccceechHhHHHHHHHHHHHHhccc
Confidence 23445899999999766
No 450
>PRK04132 replication factor C small subunit; Provisional
Probab=62.44 E-value=31 Score=40.23 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=31.2
Q ss_pred eecCCCCchhHHHHHHHHhc-----CCcEEEEecCch-hHHHHHHHHHhhh
Q psy11640 32 KKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGV-SVEQWKHQFKLWS 76 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~-Lv~Qw~~e~~~~~ 76 (552)
|-||+++|||-+|.+++... +..++-+-++.. =+++.++.++.+.
T Consensus 571 G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a 621 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFA 621 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHH
Confidence 67999999999888887665 345777777663 3555555555444
No 451
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=62.40 E-value=7.6 Score=40.32 Aligned_cols=36 Identities=8% Similarity=-0.082 Sum_probs=23.2
Q ss_pred ccCeecCCCCchhHHHHHHHHhc----CCcEEEEecCchh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV----RKRALVLCNSGVS 64 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~----~~~~LIl~Pt~~L 64 (552)
--++++|||+|||-..-+++... ..+++.+-.+.++
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh
Confidence 34677999999998766655433 2455665555443
No 452
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=62.39 E-value=5.7 Score=43.53 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=20.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhcC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
...+..+|+|+|||-+|-.++....
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578889999999999888776543
No 453
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=62.32 E-value=5.3 Score=37.43 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=17.1
Q ss_pred hhhccCeecCCCCchhHHHHHHHHh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
|++--++++|+|+|||.....+...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Confidence 3455678999999999887777654
No 454
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.31 E-value=7.5 Score=41.26 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=32.3
Q ss_pred cccchhhhhhhhhhHHHHHHHHHhhhc-cCeecCCCCchhHHHHHHHHhcC
Q psy11640 3 FRDVISGCKKKKKKKKKKKKKKKKKKK-KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
|.++| .++..++.-++.=.+++-.+ .+..+|+|+|||.+|..++....
T Consensus 15 ~~eii--Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 15 FADIT--AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred Hhhcc--ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45555 36666655554444444444 67889999999999988776553
No 455
>PRK12678 transcription termination factor Rho; Provisional
Probab=62.27 E-value=12 Score=41.40 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=29.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhc--CCcEEEEecCchhHHHHHHHHHhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV--RKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~--~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
-+.+||+|+|+|||.+...++... +.+-+.|+ .+|+.+-.+|...|
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~i--vvLIgERpeEVtdm 464 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLM--VVLVDERPEEVTDM 464 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEE--EEEEeCchhhHHHH
Confidence 467899999999998876655422 22222222 44677777776555
No 456
>PRK04195 replication factor C large subunit; Provisional
Probab=62.05 E-value=11 Score=41.03 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=28.4
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
.+..++++|+|+|||..+-+++...+..++.+-++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 56778889999999999988888887777766554
No 457
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=61.88 E-value=5 Score=35.57 Aligned_cols=36 Identities=17% Similarity=-0.041 Sum_probs=26.7
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVE 66 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~ 66 (552)
.+.++.|+|||..+-.++...+..--|-.||=.|++
T Consensus 26 ~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv~ 61 (133)
T TIGR00150 26 LLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLVN 61 (133)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeeee
Confidence 355999999998887777766655557778766664
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=61.83 E-value=7 Score=37.49 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=19.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-++.+|+|+|||.++-.++...+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999888877666
No 459
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.83 E-value=43 Score=34.39 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=27.8
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhC
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWST 77 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~ 77 (552)
-+.|+..|+|||-+..-++. ..+.++++.+- -.-..--.++++.|..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~-DTFRAaAiEQL~~w~e 191 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAG-DTFRAAAIEQLEVWGE 191 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHH
Confidence 46779999999966544443 23455555544 2233334566666663
No 460
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.72 E-value=5.7 Score=42.85 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=15.9
Q ss_pred eecCCCCchhHHHHHHHHhcC
Q psy11640 32 KKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~ 52 (552)
+.+|||||||.+--+++...+
T Consensus 263 vTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 263 VTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred EeCCCCCCHHHHHHHHHHHhc
Confidence 349999999988777666544
No 461
>PLN02199 shikimate kinase
Probab=61.61 E-value=10 Score=38.41 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=27.3
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQW 68 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw 68 (552)
.+.-.+++++|+|||.++-.++...+.++ +.+-.++++.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~f---IDtD~lIe~~ 140 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTF---FDCDTLIEQA 140 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE---EehHHHHHHH
Confidence 34556789999999999988887776653 3334555553
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.44 E-value=14 Score=41.72 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=32.4
Q ss_pred CCcccchhhhhhhhhhHHHHHHHHHhhhc-cCeecCCCCchhHHHHHHHHhc
Q psy11640 1 MGFRDVISGCKKKKKKKKKKKKKKKKKKK-KKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
|-|.++|- ++..++.....-++++-.+ .+..+|.|.|||..|..++...
T Consensus 14 ~~f~~viG--q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 14 STFESVVG--QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CCHHHhcC--cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 35667773 5555555555544444444 6788999999999877766544
No 463
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=61.33 E-value=8.7 Score=40.81 Aligned_cols=37 Identities=5% Similarity=-0.081 Sum_probs=23.7
Q ss_pred ccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVE 66 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~ 66 (552)
--++.+|+|+|||..+.+++... +.+++++.. ..+..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-EKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-HHHHH
Confidence 34688999999999887665432 345555533 33443
No 464
>KOG0743|consensus
Probab=61.06 E-value=8 Score=41.09 Aligned_cols=38 Identities=18% Similarity=-0.019 Sum_probs=26.0
Q ss_pred HHHhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 23 KKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 23 ~~~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
-|-=|+..++.+|||+|||-.-.|++..++--+..|-=
T Consensus 231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743|consen 231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred CcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence 34468999999999999996544444455555544443
No 465
>PRK05480 uridine/cytidine kinase; Provisional
Probab=61.02 E-value=9.5 Score=36.30 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.9
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+++|+|+|||..+-.+.....
T Consensus 10 ~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 10 GIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4569999999988776666553
No 466
>PRK06547 hypothetical protein; Provisional
Probab=60.88 E-value=8.1 Score=35.85 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.6
Q ss_pred eecCCCCchhHHHHHHHHhcCCc
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
+.+|+|+|||.++-.++...+.+
T Consensus 20 i~G~~GsGKTt~a~~l~~~~~~~ 42 (172)
T PRK06547 20 IDGRSGSGKTTLAGALAARTGFQ 42 (172)
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 34799999999988777665533
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=60.76 E-value=9.1 Score=36.06 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=19.9
Q ss_pred eecCCCCchhHHHHHHHHhcCCcEEEEecCc
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRKRALVLCNSG 62 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~ 62 (552)
+++|+|+|||..+-.+........+.+.+..
T Consensus 4 i~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D 34 (198)
T cd02023 4 IAGGSGSGKTTVAEEIIEQLGNPKVVIISQD 34 (198)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5799999999887766555433333344433
No 468
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=60.76 E-value=31 Score=35.87 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=22.5
Q ss_pred CeecCCCCchhHHHHHHHHh---------cCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---------VRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---------~~~~~LIl~Pt~ 62 (552)
.+.+|+|+|||..++.++.. ..++++++..-.
T Consensus 127 ~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 127 EIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred EEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 36689999999988766532 124788777654
No 469
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.69 E-value=7.8 Score=42.24 Aligned_cols=24 Identities=8% Similarity=-0.000 Sum_probs=19.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
+..+..+|.|+|||-+|..++...
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHH
Confidence 357889999999999887766543
No 470
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=60.65 E-value=21 Score=40.39 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=35.8
Q ss_pred hhhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCch--hHHHHHHHHHhhhCCCCCcEEEEec
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGV--SVEQWKHQFKLWSTADDSMICRFTS 88 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~--Lv~Qw~~e~~~~~~~~~~~I~~~~g 88 (552)
...+.++++|||+|||.....++. ..+..++|+=|-.. |.......+++... ...+.+|+-
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~--~dd~~~f~~ 240 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGR--PDRFYYFHP 240 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCC--CceEEEEec
Confidence 457889999999999977644443 23444555555433 55544555555542 223555553
No 471
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=60.59 E-value=8.5 Score=39.58 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=25.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVS 64 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~L 64 (552)
--++++|||+|||-..-+++... ..+++++=.+.+|
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 35788999999997766665543 3466666666665
No 472
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.50 E-value=5.8 Score=40.01 Aligned_cols=20 Identities=15% Similarity=0.023 Sum_probs=15.2
Q ss_pred eecCCCCchhHHHHHHHHhc
Q psy11640 32 KKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~ 51 (552)
+.+|||||||-+-.+++...
T Consensus 130 VTGpTGSGKSTTlAamId~i 149 (353)
T COG2805 130 VTGPTGSGKSTTLAAMIDYI 149 (353)
T ss_pred EeCCCCCcHHHHHHHHHHHH
Confidence 34999999997766666644
No 473
>CHL00176 ftsH cell division protein; Validated
Probab=60.29 E-value=6.4 Score=44.42 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.1
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++++|+|+|||..|-+++...+.+.+.+..
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~ 249 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISG 249 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccH
Confidence 456888999999999998888777777655543
No 474
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=60.20 E-value=8 Score=35.80 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=18.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.++...+
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34679999999999877776554
No 475
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=60.13 E-value=14 Score=40.69 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=33.4
Q ss_pred cCeecCCCCchhHHHHHHHH---hc-CCcEEEEecCchhHHHHHHHHHhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TV-RKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~-~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
.++.+++|+|||..++.++. .. +.+++++.- .+-.+|..+.+..+
T Consensus 34 ~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~-ee~~~~i~~~~~~~ 82 (509)
T PRK09302 34 TLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF-EESPEDIIRNVASF 82 (509)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc-cCCHHHHHHHHHHc
Confidence 35679999999999887654 23 567877766 45777888877765
No 476
>PRK06217 hypothetical protein; Validated
Probab=60.11 E-value=8.3 Score=35.92 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=19.6
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
-.+++++|+|||-++-.+....+-+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3466899999999998888776644
No 477
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=59.94 E-value=8.5 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=19.4
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+++|+|+|||-+|-.+....+.+
T Consensus 3 ~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 3 VLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC
Confidence 467899999999998887766554
No 478
>CHL00095 clpC Clp protease ATP binding subunit
Probab=59.79 E-value=19 Score=42.11 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=18.2
Q ss_pred cCeecCCCCchhHHHHHHHHhc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.+.++|||+|||..|-+++...
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4677999999999988887654
No 479
>KOG0741|consensus
Probab=59.69 E-value=4.3 Score=43.87 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=0.0
Q ss_pred hccCeecCCCCchhHHH
Q psy11640 28 KKKKKKKRPSAGKSLVG 44 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~a 44 (552)
|.-++..|+|+|||++|
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
No 480
>KOG1942|consensus
Probab=59.50 E-value=6.8 Score=39.26 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=22.1
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.-+.-++..|+|+|||..|+++...++.
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 4556677799999999999988776653
No 481
>KOG0740|consensus
Probab=59.29 E-value=6.8 Score=41.62 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=36.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
..+...|+|+|||..+-+++...+....-|.|+ .|+.-|.-+-+
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~atff~iSas-sLtsK~~Ge~e 231 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESGATFFNISAS-SLTSKYVGESE 231 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhcceEeeccHH-HhhhhccChHH
Confidence 567789999999999999998888888888885 48876655543
No 482
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=59.08 E-value=8.7 Score=40.01 Aligned_cols=21 Identities=14% Similarity=-0.135 Sum_probs=16.6
Q ss_pred CeecCCCCchhHHHHHHHHhc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.+++|+|+|||..|-+++...
T Consensus 82 ~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 82 YLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 567999999998887776543
No 483
>PRK14701 reverse gyrase; Provisional
Probab=58.86 E-value=35 Score=42.85 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=45.3
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~ 384 (552)
.+.++||.+++++.+..+...| .+..++|+++..++.++++.++. |+.+|||+|+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~-g~~dILV~TP 186 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN-GDFDILVTTA 186 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECC
Confidence 5779999999998877766554 13568999999999999999985 7899999983
No 484
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=58.78 E-value=11 Score=37.53 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=25.3
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc--C-CcEEEEecCchh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV--R-KRALVLCNSGVS 64 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~--~-~~~LIl~Pt~~L 64 (552)
+.--++++|||+|||-..-+++... . .+++++-.+.++
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4445666999999998776666543 3 566666666555
No 485
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=58.73 E-value=35 Score=40.05 Aligned_cols=63 Identities=6% Similarity=0.210 Sum_probs=48.4
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc-------C---Cc-eEeCCCCHHHHHHHHHhhccCCCeeEEEEe-CccccccC
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM-------N---KP-YIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFD 391 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L-------~---~~-~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~~GlD 391 (552)
..|.++++..++...+....+.| + +. .+||.++..++++++++|.+ |+.+|||+| .-+..-++
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~-gdfdIlitTs~FL~k~~e 197 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES-GDFDILITTSQFLSKRFE 197 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhc-CCccEEEEeHHHHHhhHH
Confidence 47889999999977666655554 2 11 28999999999999999995 899999998 54544443
No 486
>PTZ00293 thymidine kinase; Provisional
Probab=58.59 E-value=11 Score=36.25 Aligned_cols=32 Identities=16% Similarity=-0.002 Sum_probs=25.2
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~ 62 (552)
++.+|+|+|||...+..+.. .+++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 46799999999877776653 567899999965
No 487
>CHL00095 clpC Clp protease ATP binding subunit
Probab=58.54 E-value=10 Score=44.29 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.3
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHh
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
+.|+..++++|+|.|||.++-.++..
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHH
Confidence 46678899999999999988776653
No 488
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=58.34 E-value=8.3 Score=32.93 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.0
Q ss_pred eecCCCCchhHHHHHHHHhc
Q psy11640 32 KKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~ 51 (552)
+.+++|+|||-+|-.+....
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 56899999999988877666
No 489
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.33 E-value=28 Score=37.04 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEccccccccccc
Q psy11640 37 SAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMISHTQKR 113 (552)
Q Consensus 37 G~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l~~~~~~ 113 (552)
|+|||-++.-++. ..+.++++||.-.--.. -.++++... ....|.+|..+... .+--++.
T Consensus 110 GsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA-A~eQL~~La--~q~~v~~f~~~~~~----------~Pv~Iak---- 172 (451)
T COG0541 110 GSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA-AIEQLKQLA--EQVGVPFFGSGTEK----------DPVEIAK---- 172 (451)
T ss_pred CCChHhHHHHHHHHHHHcCCceEEEecccCChH-HHHHHHHHH--HHcCCceecCCCCC----------CHHHHHH----
Q ss_pred chhHHHHHHHHhcCcccEEEEc
Q psy11640 114 SWEADQTMQWLQNQEWGIMLLD 135 (552)
Q Consensus 114 ~~~~~~~~~~l~~~~~~liIvD 135 (552)
.-++.+....++++|+|
T Consensus 173 -----~al~~ak~~~~DvvIvD 189 (451)
T COG0541 173 -----AALEKAKEEGYDVVIVD 189 (451)
T ss_pred -----HHHHHHHHcCCCEEEEe
No 490
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=58.22 E-value=10 Score=36.50 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=21.6
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~ 59 (552)
.--++++|+|+|||..+.++... .+.+++++.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 44667899999999887766543 234455444
No 491
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=58.16 E-value=12 Score=39.92 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=28.4
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVE 66 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~ 66 (552)
++.++++|||+|||...-.++. ..+.+++|+=|..++..
T Consensus 43 ~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 43 AHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVS 84 (410)
T ss_pred ccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhH
Confidence 5678899999999976433332 34678888888877654
No 492
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=57.95 E-value=6.6 Score=39.35 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=21.1
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.++--++++|+|+|||...-..+....
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCC
Confidence 345678999999999998877776543
No 493
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=57.73 E-value=9.4 Score=38.26 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=19.6
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
+.+...|+|+|||-.|-.++..++.
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 5688999999999887766655554
No 494
>PLN02674 adenylate kinase
Probab=57.71 E-value=8.4 Score=37.93 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=20.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhcC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+-++++|+|+|||.++-.++...+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567779999999999888877665
No 495
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=57.70 E-value=16 Score=40.12 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=32.5
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++..|+|+|||..+..++. ..+.++++++-. +...|..+.+..|
T Consensus 277 li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~ 323 (509)
T PRK09302 277 LVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSW 323 (509)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHc
Confidence 5679999999998887765 446788888764 4567777766654
No 496
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=57.64 E-value=9.5 Score=34.00 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.6
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++++|+|+|||-+|-.+....+
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhcC
Confidence 4679999999999887776644
No 497
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.50 E-value=9.2 Score=42.29 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=31.3
Q ss_pred CcccchhhhhhhhhhHHHHHHHHHhhhc-cCeecCCCCchhHHHHHHHHhcC
Q psy11640 2 GFRDVISGCKKKKKKKKKKKKKKKKKKK-KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-|.++| +++..++.-...=+..+-.+ .+..+|.|+|||..|..++....
T Consensus 14 ~f~dii--Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 14 SFAEVA--GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cHHHhc--CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356666 45555554444333333333 57889999999999988876543
No 498
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=57.34 E-value=16 Score=42.11 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=45.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh----c---CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----V---RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~---~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~Iv 100 (552)
...++++.+|||||.+.+.-++. . ..++|+|+-|...+....+.+.+..+. . ...+.
T Consensus 18 g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~-----------~-----~~~~~ 81 (726)
T TIGR01073 18 GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP-----------V-----AEDIW 81 (726)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----------c-----cCCcE
Confidence 45788899999999887765442 1 246999999987777777777665431 0 12466
Q ss_pred EEccccccc
Q psy11640 101 VTTYSMISH 109 (552)
Q Consensus 101 ItTy~~l~~ 109 (552)
|.|++++..
T Consensus 82 i~TFHs~~~ 90 (726)
T TIGR01073 82 ISTFHSMCV 90 (726)
T ss_pred EEcHHHHHH
Confidence 777776643
No 499
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=57.29 E-value=5.5 Score=35.06 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
+.++..++|.|||..+.+++...+..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f 27 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSF 27 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--E
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCce
No 500
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=57.26 E-value=9.8 Score=37.57 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
++++|+|+|||..+-.++......-++++
T Consensus 47 ~l~G~~G~GKTtl~~~l~~~l~~~~~~~~ 75 (269)
T TIGR03015 47 LITGEVGAGKTTLIRNLLKRLDQERVVAA 75 (269)
T ss_pred EEEcCCCCCHHHHHHHHHHhcCCCCeEEe
Done!