Query psy11640
Match_columns 552
No_of_seqs 363 out of 2020
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 15:13:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fwr_A DNA repair protein RAD2 100.0 7.8E-45 2.7E-49 391.6 23.8 318 28-453 109-466 (472)
2 3mwy_W Chromo domain-containin 100.0 3.8E-42 1.3E-46 392.8 30.6 337 26-466 254-706 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 6.3E-41 2.2E-45 363.7 29.6 343 6-449 37-461 (500)
4 1z3i_X Similar to RAD54-like; 100.0 9.1E-40 3.1E-44 364.5 28.9 328 26-453 78-540 (644)
5 2oca_A DAR protein, ATP-depend 100.0 2E-38 6.8E-43 344.9 29.6 340 28-466 129-499 (510)
6 1wp9_A ATP-dependent RNA helic 100.0 8.1E-38 2.8E-42 334.8 23.0 327 29-450 25-484 (494)
7 3dmq_A RNA polymerase-associat 100.0 1E-35 3.6E-40 344.9 26.9 328 27-450 170-624 (968)
8 3h1t_A Type I site-specific re 100.0 2.7E-35 9.1E-40 326.0 22.4 335 7-440 179-560 (590)
9 3tbk_A RIG-I helicase domain; 100.0 5.6E-35 1.9E-39 319.6 21.9 127 313-449 370-515 (555)
10 4a2p_A RIG-I, retinoic acid in 100.0 9.4E-35 3.2E-39 318.3 22.9 126 313-448 371-515 (556)
11 4a2q_A RIG-I, retinoic acid in 100.0 6.3E-34 2.1E-38 325.4 26.5 127 313-449 612-757 (797)
12 4a2w_A RIG-I, retinoic acid in 100.0 5.4E-33 1.8E-37 321.6 25.8 126 313-448 612-756 (936)
13 4gl2_A Interferon-induced heli 100.0 7.9E-33 2.7E-37 312.0 22.0 107 314-422 381-509 (699)
14 1xti_A Probable ATP-dependent 100.0 1.6E-32 5.4E-37 287.2 21.9 291 28-441 46-357 (391)
15 3pey_A ATP-dependent RNA helic 100.0 4.2E-32 1.4E-36 283.8 24.4 291 28-441 45-356 (395)
16 2db3_A ATP-dependent RNA helic 100.0 2.4E-32 8.1E-37 291.2 22.9 307 27-459 93-424 (434)
17 1hv8_A Putative ATP-dependent 100.0 2.9E-32 1E-36 282.1 22.8 286 28-442 45-346 (367)
18 1s2m_A Putative ATP-dependent 100.0 2.2E-32 7.5E-37 287.4 21.9 290 28-442 59-366 (400)
19 2j0s_A ATP-dependent RNA helic 100.0 4E-32 1.4E-36 286.5 23.4 291 28-442 75-384 (410)
20 2ykg_A Probable ATP-dependent 100.0 5.7E-32 1.9E-36 304.9 22.1 126 312-447 378-522 (696)
21 2z0m_A 337AA long hypothetical 100.0 2.9E-32 1E-36 279.0 17.6 274 28-424 32-313 (337)
22 3eiq_A Eukaryotic initiation f 100.0 1.9E-32 6.4E-37 288.9 16.2 291 28-442 78-388 (414)
23 2i4i_A ATP-dependent RNA helic 100.0 1.5E-31 5E-36 282.5 20.8 292 27-442 52-384 (417)
24 3fht_A ATP-dependent RNA helic 100.0 1.1E-30 3.7E-35 275.0 25.0 292 28-441 65-379 (412)
25 1fuu_A Yeast initiation factor 100.0 6.2E-33 2.1E-37 290.4 6.1 291 28-441 59-366 (394)
26 2v1x_A ATP-dependent DNA helic 100.0 4.4E-30 1.5E-34 282.9 25.2 282 28-423 60-363 (591)
27 3oiy_A Reverse gyrase helicase 100.0 9E-30 3.1E-34 269.3 25.7 288 28-438 37-362 (414)
28 2eyq_A TRCF, transcription-rep 100.0 8.7E-30 3E-34 299.2 24.2 291 29-455 626-936 (1151)
29 3sqw_A ATP-dependent RNA helic 100.0 1.8E-29 6.1E-34 278.7 25.0 299 27-441 60-398 (579)
30 3i5x_A ATP-dependent RNA helic 100.0 1.2E-29 4.2E-34 278.9 23.6 299 27-441 111-449 (563)
31 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-29 9.6E-34 273.3 23.2 275 28-424 41-333 (523)
32 3fho_A ATP-dependent RNA helic 100.0 1.1E-30 3.8E-35 283.8 12.1 290 27-440 158-469 (508)
33 3fmp_B ATP-dependent RNA helic 100.0 7.2E-30 2.5E-34 275.3 10.1 292 28-441 132-446 (479)
34 1gm5_A RECG; helicase, replica 100.0 1.1E-29 3.7E-34 286.1 10.3 297 28-462 390-715 (780)
35 2xgj_A ATP-dependent RNA helic 100.0 2.1E-27 7.1E-32 275.3 27.3 311 28-441 102-499 (1010)
36 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.4E-28 1.5E-32 279.8 21.3 310 27-440 300-708 (1038)
37 2p6r_A Afuhel308 helicase; pro 100.0 3.2E-27 1.1E-31 266.4 24.4 300 27-443 40-390 (702)
38 3l9o_A ATP-dependent RNA helic 100.0 5.9E-27 2E-31 273.8 25.9 310 30-442 202-598 (1108)
39 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-26 4E-31 262.3 27.0 305 27-442 46-409 (715)
40 2zj8_A DNA helicase, putative 99.9 5.6E-27 1.9E-31 265.1 23.8 298 27-444 39-390 (720)
41 4a4z_A Antiviral helicase SKI2 99.9 1.5E-26 5.3E-31 268.0 26.7 317 28-446 55-497 (997)
42 4ddu_A Reverse gyrase; topoiso 99.9 3.5E-25 1.2E-29 258.8 24.8 259 28-406 94-388 (1104)
43 2v6i_A RNA helicase; membrane, 99.9 7.4E-26 2.5E-30 240.7 11.9 257 28-436 3-288 (431)
44 1yks_A Genome polyprotein [con 99.9 4.6E-25 1.6E-29 235.1 17.0 87 329-422 176-286 (440)
45 2jlq_A Serine protease subunit 99.9 5.5E-25 1.9E-29 235.3 16.5 89 329-423 187-299 (451)
46 2whx_A Serine protease/ntpase/ 99.9 1.7E-24 5.9E-29 239.2 19.2 98 329-439 354-476 (618)
47 2z83_A Helicase/nucleoside tri 99.9 1.6E-24 5.5E-29 232.2 18.2 100 329-441 189-313 (459)
48 4f92_B U5 small nuclear ribonu 99.9 8.2E-24 2.8E-28 255.6 21.4 305 28-444 96-476 (1724)
49 1z5z_A Helicase of the SNF2/RA 99.9 9.5E-24 3.3E-28 210.2 17.8 171 276-452 24-235 (271)
50 3rc3_A ATP-dependent RNA helic 99.9 7.8E-24 2.7E-28 235.0 17.7 263 29-440 157-444 (677)
51 1gku_B Reverse gyrase, TOP-RG; 99.9 6.3E-24 2.2E-28 248.0 16.8 245 28-405 72-352 (1054)
52 4f92_B U5 small nuclear ribonu 99.9 3E-23 1E-27 250.7 22.2 302 28-440 943-1307(1724)
53 2wv9_A Flavivirin protease NS2 99.9 1.1E-23 3.6E-28 234.5 15.3 87 329-422 409-520 (673)
54 1tf5_A Preprotein translocase 99.9 4.4E-23 1.5E-27 228.9 18.1 109 312-424 414-535 (844)
55 3o8b_A HCV NS3 protease/helica 99.9 1.6E-23 5.4E-28 230.3 14.3 255 29-443 234-516 (666)
56 2xau_A PRE-mRNA-splicing facto 99.9 6.1E-23 2.1E-27 232.3 19.4 285 29-442 111-444 (773)
57 2fsf_A Preprotein translocase 99.9 1.6E-22 5.6E-27 223.8 15.6 110 311-424 422-573 (853)
58 1c4o_A DNA nucleotide excision 99.9 7.5E-21 2.6E-25 212.0 22.3 108 326-443 435-552 (664)
59 1nkt_A Preprotein translocase 99.9 1.1E-20 3.8E-25 209.5 22.0 109 312-424 442-607 (922)
60 2hjv_A ATP-dependent RNA helic 99.8 1.2E-19 4.3E-24 166.6 16.0 119 312-441 19-142 (163)
61 2d7d_A Uvrabc system protein B 99.8 5.2E-19 1.8E-23 197.1 22.8 108 326-443 441-558 (661)
62 3jux_A Protein translocase sub 99.8 4.2E-19 1.4E-23 193.1 18.9 109 312-424 456-577 (822)
63 1t5i_A C_terminal domain of A 99.8 1.7E-19 5.8E-24 167.3 13.7 118 312-440 15-137 (172)
64 1fuk_A Eukaryotic initiation f 99.8 2.9E-19 9.9E-24 164.5 12.3 121 312-443 13-139 (165)
65 2jgn_A DBX, DDX3, ATP-dependen 99.8 4.7E-19 1.6E-23 166.3 13.7 122 311-442 28-154 (185)
66 2rb4_A ATP-dependent RNA helic 99.8 5.7E-19 1.9E-23 164.1 13.4 118 314-442 20-148 (175)
67 3eaq_A Heat resistant RNA depe 99.8 1.2E-18 4.1E-23 167.2 15.3 120 311-441 14-138 (212)
68 2p6n_A ATP-dependent RNA helic 99.8 1.2E-18 4E-23 164.4 13.3 118 312-441 39-161 (191)
69 1rif_A DAR protein, DNA helica 99.8 2.5E-18 8.6E-23 172.1 11.7 144 28-263 129-280 (282)
70 2yjt_D ATP-dependent RNA helic 99.6 1.5E-19 5.1E-24 167.3 0.0 118 313-441 15-137 (170)
71 2fz4_A DNA repair protein RAD2 99.7 6.3E-18 2.1E-22 165.0 11.2 125 29-252 110-235 (237)
72 3i32_A Heat resistant RNA depe 99.7 1.6E-17 5.3E-22 167.4 14.2 121 310-441 10-135 (300)
73 2vl7_A XPD; helicase, unknown 99.6 3.3E-14 1.1E-18 155.1 22.0 94 328-425 382-512 (540)
74 2ipc_A Preprotein translocase 99.5 3.6E-13 1.2E-17 149.3 21.2 107 31-142 96-216 (997)
75 3b6e_A Interferon-induced heli 99.5 8.4E-15 2.9E-19 139.6 7.1 110 28-140 49-174 (216)
76 2pl3_A Probable ATP-dependent 99.5 5E-14 1.7E-18 136.7 10.0 105 28-139 63-182 (236)
77 1t6n_A Probable ATP-dependent 99.5 3.2E-14 1.1E-18 136.5 8.5 105 28-140 52-170 (220)
78 2gxq_A Heat resistant RNA depe 99.5 3.8E-14 1.3E-18 134.4 7.7 103 28-140 39-156 (207)
79 1vec_A ATP-dependent RNA helic 99.5 4.3E-14 1.5E-18 134.0 7.5 104 28-139 41-157 (206)
80 1qde_A EIF4A, translation init 99.5 4.8E-14 1.6E-18 135.6 7.8 104 28-139 52-166 (224)
81 2oxc_A Probable ATP-dependent 99.5 7.7E-14 2.6E-18 135.0 8.7 105 28-140 62-178 (230)
82 3iuy_A Probable ATP-dependent 99.5 8.7E-14 3E-18 134.3 8.9 104 27-139 57-178 (228)
83 1wrb_A DJVLGB; RNA helicase, D 99.5 8.5E-14 2.9E-18 136.6 8.8 105 28-140 61-186 (253)
84 3ly5_A ATP-dependent RNA helic 99.5 5.2E-14 1.8E-18 139.2 6.9 105 28-139 92-212 (262)
85 3ber_A Probable ATP-dependent 99.4 7.2E-14 2.4E-18 137.1 7.4 106 28-140 81-198 (249)
86 1q0u_A Bstdead; DEAD protein, 99.4 5.2E-14 1.8E-18 135.1 6.2 105 28-140 42-162 (219)
87 3fe2_A Probable ATP-dependent 99.4 1E-13 3.6E-18 135.2 6.3 104 28-139 67-187 (242)
88 3hgt_A HDA1 complex subunit 3; 99.4 5.4E-13 1.9E-17 133.5 11.6 130 310-449 105-245 (328)
89 3bor_A Human initiation factor 99.4 1.5E-13 5.3E-18 133.6 7.1 105 28-140 68-185 (237)
90 3crv_A XPD/RAD3 related DNA he 99.4 3.1E-11 1.1E-15 131.9 25.7 61 28-88 23-83 (551)
91 3dkp_A Probable ATP-dependent 99.4 1.5E-13 5.1E-18 134.2 6.1 107 28-140 67-187 (245)
92 3fmo_B ATP-dependent RNA helic 99.3 6.2E-12 2.1E-16 126.8 9.8 106 28-140 132-247 (300)
93 3llm_A ATP-dependent RNA helic 99.0 5.2E-10 1.8E-14 108.4 9.8 100 29-139 78-187 (235)
94 4a15_A XPD helicase, ATP-depen 97.5 6.6E-05 2.3E-09 82.7 5.7 95 328-425 446-575 (620)
95 4b3f_X DNA-binding protein smu 97.4 0.00011 3.9E-09 81.4 6.3 47 29-75 207-256 (646)
96 2gk6_A Regulator of nonsense t 97.2 0.00063 2.2E-08 75.0 9.1 48 28-75 196-247 (624)
97 2wjy_A Regulator of nonsense t 96.8 0.0017 5.8E-08 73.4 7.7 48 28-75 372-423 (800)
98 2xzl_A ATP-dependent helicase 96.8 0.0028 9.5E-08 71.8 9.2 48 28-75 376-427 (802)
99 3vkw_A Replicase large subunit 96.5 0.003 1E-07 66.0 6.6 43 30-74 164-206 (446)
100 1w36_D RECD, exodeoxyribonucle 96.4 0.0039 1.3E-07 68.4 6.9 50 27-76 164-220 (608)
101 4a15_A XPD helicase, ATP-depen 95.9 0.025 8.7E-07 62.1 10.5 51 26-76 21-75 (620)
102 3e1s_A Exodeoxyribonuclease V, 95.6 0.027 9.1E-07 61.3 8.7 44 27-70 204-250 (574)
103 3upu_A ATP-dependent DNA helic 95.2 0.04 1.4E-06 58.1 8.5 63 8-71 27-93 (459)
104 3hjh_A Transcription-repair-co 93.9 0.056 1.9E-06 57.3 5.7 58 28-88 15-72 (483)
105 3vfd_A Spastin; ATPase, microt 92.1 0.077 2.6E-06 54.6 3.4 31 30-60 151-181 (389)
106 3lfu_A DNA helicase II; SF1 he 91.7 0.19 6.6E-06 55.0 6.3 51 27-77 22-79 (647)
107 1gm5_A RECG; helicase, replica 90.4 0.82 2.8E-05 51.3 9.8 89 311-401 398-497 (780)
108 2o0j_A Terminase, DNA packagin 89.5 1.9 6.5E-05 44.1 10.9 49 28-76 179-232 (385)
109 4b4t_M 26S protease regulatory 88.9 0.19 6.6E-06 52.3 3.0 36 26-61 214-249 (434)
110 3cpe_A Terminase, DNA packagin 88.8 2.4 8.2E-05 45.9 11.8 50 28-77 179-233 (592)
111 4b4t_L 26S protease subunit RP 88.7 0.24 8.1E-06 51.7 3.5 35 27-61 215-249 (437)
112 4b4t_J 26S protease regulatory 88.6 0.24 8.4E-06 50.9 3.5 37 26-62 181-217 (405)
113 3sxu_A DNA polymerase III subu 88.2 12 0.00043 32.5 14.1 116 314-464 23-146 (150)
114 4b4t_K 26S protease regulatory 88.1 0.25 8.6E-06 51.4 3.2 35 27-61 206-240 (428)
115 2eyq_A TRCF, transcription-rep 87.0 0.57 2E-05 55.1 5.7 72 328-400 650-731 (1151)
116 4b4t_I 26S protease regulatory 86.8 0.38 1.3E-05 49.9 3.6 36 26-61 215-250 (437)
117 4b4t_H 26S protease regulatory 86.5 0.41 1.4E-05 50.1 3.7 36 26-61 242-277 (467)
118 1tue_A Replication protein E1; 86.1 0.19 6.3E-06 46.9 0.7 30 26-55 57-86 (212)
119 1d2n_A N-ethylmaleimide-sensit 84.4 0.65 2.2E-05 44.7 3.8 34 26-59 63-96 (272)
120 3t15_A Ribulose bisphosphate c 84.1 0.53 1.8E-05 46.2 3.1 32 29-60 38-69 (293)
121 1uaa_A REP helicase, protein ( 83.5 0.89 3E-05 50.1 4.9 67 28-109 16-89 (673)
122 3ec2_A DNA replication protein 83.4 0.46 1.6E-05 42.6 2.2 44 27-71 38-85 (180)
123 1u0j_A DNA replication protein 83.1 0.62 2.1E-05 45.1 3.0 24 26-49 103-126 (267)
124 2qz4_A Paraplegin; AAA+, SPG7, 83.1 0.81 2.8E-05 43.4 3.9 32 29-60 41-72 (262)
125 2zan_A Vacuolar protein sortin 82.5 0.87 3E-05 47.5 4.1 33 28-60 168-201 (444)
126 3eie_A Vacuolar protein sortin 82.3 0.53 1.8E-05 46.8 2.3 33 28-60 52-84 (322)
127 1xwi_A SKD1 protein; VPS4B, AA 81.8 0.44 1.5E-05 47.5 1.5 33 28-60 46-79 (322)
128 3n70_A Transport activator; si 81.1 0.98 3.3E-05 39.0 3.3 24 27-50 24-47 (145)
129 3cf0_A Transitional endoplasmi 81.0 1.1 3.9E-05 43.9 4.1 33 28-60 50-82 (301)
130 3h4m_A Proteasome-activating n 80.8 1 3.5E-05 43.5 3.7 34 27-60 51-84 (285)
131 3dm5_A SRP54, signal recogniti 80.8 4.3 0.00015 42.2 8.5 31 29-59 102-135 (443)
132 3a8t_A Adenylate isopentenyltr 80.1 0.53 1.8E-05 47.2 1.3 24 29-52 42-65 (339)
133 2w58_A DNAI, primosome compone 79.8 1.2 4E-05 40.6 3.6 32 28-59 55-89 (202)
134 2orw_A Thymidine kinase; TMTK, 79.8 1.3 4.5E-05 40.1 3.8 33 30-62 6-41 (184)
135 1xx6_A Thymidine kinase; NESG, 79.7 1.3 4.6E-05 40.5 3.8 33 30-62 11-46 (191)
136 3foz_A TRNA delta(2)-isopenten 79.5 0.59 2E-05 46.3 1.4 23 30-52 13-35 (316)
137 1lv7_A FTSH; alpha/beta domain 79.4 1.2 4.2E-05 42.3 3.7 31 28-58 46-76 (257)
138 3bos_A Putative DNA replicatio 79.3 1.2 4.2E-05 41.2 3.6 24 26-49 51-74 (242)
139 3hws_A ATP-dependent CLP prote 78.3 1.3 4.5E-05 44.6 3.7 33 28-60 52-84 (363)
140 3b9p_A CG5977-PA, isoform A; A 78.3 1.5 5E-05 42.7 3.9 32 28-59 55-86 (297)
141 2bjv_A PSP operon transcriptio 77.7 2.9 0.0001 39.8 5.8 37 27-64 29-68 (265)
142 2qp9_X Vacuolar protein sortin 77.4 1.3 4.6E-05 44.6 3.4 33 28-60 85-117 (355)
143 1l8q_A Chromosomal replication 77.4 2.3 7.8E-05 42.0 5.1 44 28-72 38-84 (324)
144 3trf_A Shikimate kinase, SK; a 77.2 1.3 4.4E-05 39.6 2.9 27 28-54 6-32 (185)
145 1ofh_A ATP-dependent HSL prote 77.0 1.5 5.2E-05 42.6 3.6 34 27-60 50-83 (310)
146 1pjr_A PCRA; DNA repair, DNA r 76.7 2.1 7.1E-05 47.7 5.0 50 28-77 25-81 (724)
147 3d8b_A Fidgetin-like protein 1 76.4 1.6 5.4E-05 44.0 3.6 34 27-60 117-150 (357)
148 2r62_A Cell division protease 76.2 0.94 3.2E-05 43.3 1.8 29 28-56 45-73 (268)
149 1um8_A ATP-dependent CLP prote 76.0 1.7 5.7E-05 44.1 3.7 31 28-58 73-103 (376)
150 2b8t_A Thymidine kinase; deoxy 75.7 2.1 7.1E-05 40.2 4.0 32 31-62 16-50 (223)
151 3co5_A Putative two-component 75.6 0.75 2.5E-05 39.7 0.8 40 27-68 27-66 (143)
152 2dr3_A UPF0273 protein PH0284; 75.6 3.3 0.00011 38.6 5.4 44 30-74 26-72 (247)
153 2ze6_A Isopentenyl transferase 75.2 1.6 5.4E-05 41.7 3.1 24 31-54 5-28 (253)
154 1jbk_A CLPB protein; beta barr 75.1 1.9 6.3E-05 38.1 3.4 24 27-50 43-66 (195)
155 3pfi_A Holliday junction ATP-d 74.8 1.9 6.5E-05 42.7 3.7 30 28-57 56-85 (338)
156 2qgz_A Helicase loader, putati 74.7 1.5 5.1E-05 43.3 2.8 32 28-59 153-188 (308)
157 2p65_A Hypothetical protein PF 74.3 1.5 5E-05 38.8 2.5 25 27-51 43-67 (187)
158 1c9k_A COBU, adenosylcobinamid 74.3 2 6.7E-05 39.0 3.3 44 31-75 3-46 (180)
159 3exa_A TRNA delta(2)-isopenten 74.2 1.2 4.1E-05 44.2 2.0 23 30-52 6-28 (322)
160 2zts_A Putative uncharacterize 74.2 3.6 0.00012 38.4 5.3 44 31-75 34-81 (251)
161 3cf2_A TER ATPase, transitiona 72.7 1.2 4.2E-05 49.9 1.8 35 26-60 510-544 (806)
162 1qhx_A CPT, protein (chloramph 72.4 2.6 8.7E-05 37.3 3.6 27 31-57 7-33 (178)
163 1hqc_A RUVB; extended AAA-ATPa 72.2 2.2 7.4E-05 41.9 3.4 31 28-58 39-69 (324)
164 3pvs_A Replication-associated 72.1 4.1 0.00014 42.5 5.5 33 28-60 51-83 (447)
165 2j9r_A Thymidine kinase; TK1, 72.0 3.1 0.00011 38.8 4.1 31 32-62 33-66 (214)
166 2cvh_A DNA repair and recombin 72.0 2.5 8.6E-05 38.6 3.6 43 30-72 23-66 (220)
167 2r2a_A Uncharacterized protein 71.9 2.2 7.6E-05 39.2 3.1 20 31-50 9-28 (199)
168 2c9o_A RUVB-like 1; hexameric 71.9 2.2 7.5E-05 44.6 3.4 33 28-60 64-98 (456)
169 3crm_A TRNA delta(2)-isopenten 71.8 1.8 6.1E-05 43.1 2.6 24 29-52 7-30 (323)
170 3oiy_A Reverse gyrase helicase 71.7 11 0.00036 38.3 8.6 72 328-400 62-145 (414)
171 3syl_A Protein CBBX; photosynt 71.4 2.3 8E-05 41.4 3.3 21 30-50 70-90 (309)
172 2z43_A DNA repair and recombin 70.3 4.8 0.00016 39.8 5.4 44 31-74 111-164 (324)
173 1ixz_A ATP-dependent metallopr 69.9 3 0.0001 39.4 3.7 29 30-58 52-80 (254)
174 3u61_B DNA polymerase accessor 69.9 5.1 0.00017 39.3 5.5 32 31-62 52-83 (324)
175 3cmu_A Protein RECA, recombina 69.7 5.8 0.0002 48.9 6.8 33 30-62 1430-1465(2050)
176 3hu3_A Transitional endoplasmi 69.4 2.7 9.3E-05 44.4 3.5 32 28-59 239-270 (489)
177 2ce7_A Cell division protein F 68.9 3.1 0.0001 43.8 3.7 32 28-59 50-81 (476)
178 2vhj_A Ntpase P4, P4; non- hyd 68.9 1.5 5.1E-05 43.7 1.3 31 30-60 126-156 (331)
179 2zpa_A Uncharacterized protein 68.5 11 0.00039 41.1 8.2 38 29-66 194-231 (671)
180 3lw7_A Adenylate kinase relate 68.5 3 0.0001 36.3 3.1 24 31-55 5-28 (179)
181 2z4s_A Chromosomal replication 68.5 4.5 0.00015 42.0 4.9 43 28-71 131-178 (440)
182 2qmh_A HPR kinase/phosphorylas 68.1 2.4 8.4E-05 39.1 2.4 24 29-52 36-59 (205)
183 2qby_B CDC6 homolog 3, cell di 68.0 4.1 0.00014 40.8 4.4 23 29-51 47-69 (384)
184 3vaa_A Shikimate kinase, SK; s 67.7 3 0.0001 37.9 3.0 27 29-55 27-53 (199)
185 1g41_A Heat shock protein HSLU 67.6 3.2 0.00011 43.2 3.5 34 27-60 50-83 (444)
186 2x8a_A Nuclear valosin-contain 66.9 3.6 0.00012 39.7 3.6 27 29-55 46-72 (274)
187 1iy2_A ATP-dependent metallopr 66.6 3.8 0.00013 39.4 3.7 29 30-58 76-104 (278)
188 3sr0_A Adenylate kinase; phosp 66.2 3.3 0.00011 38.3 3.0 24 31-54 4-27 (206)
189 1sxj_A Activator 1 95 kDa subu 65.9 3.7 0.00013 43.6 3.7 34 28-61 78-111 (516)
190 3eph_A TRNA isopentenyltransfe 65.6 2.6 9E-05 43.2 2.3 23 31-53 6-28 (409)
191 2kjq_A DNAA-related protein; s 65.4 4.2 0.00014 35.3 3.4 21 29-49 38-58 (149)
192 3d3q_A TRNA delta(2)-isopenten 65.4 2.9 9.9E-05 41.9 2.6 23 30-52 10-32 (340)
193 3kb2_A SPBC2 prophage-derived 65.4 3.7 0.00013 35.8 3.0 24 31-54 5-28 (173)
194 4fcw_A Chaperone protein CLPB; 65.2 3.2 0.00011 40.4 2.8 30 29-58 49-81 (311)
195 3uk6_A RUVB-like 2; hexameric 64.9 4.2 0.00014 40.6 3.8 32 28-59 71-104 (368)
196 2r44_A Uncharacterized protein 64.8 3.1 0.00011 41.1 2.7 32 27-58 46-77 (331)
197 4ddu_A Reverse gyrase; topoiso 64.8 12 0.00041 43.7 7.9 87 312-400 103-202 (1104)
198 3cf2_A TER ATPase, transitiona 63.2 2.3 7.8E-05 47.8 1.5 40 28-68 239-278 (806)
199 2chg_A Replication factor C sm 62.8 4.6 0.00016 36.4 3.3 22 29-50 40-61 (226)
200 3hr8_A Protein RECA; alpha and 62.4 6.6 0.00023 39.6 4.6 34 31-64 65-101 (356)
201 2iyv_A Shikimate kinase, SK; t 62.3 4.9 0.00017 35.7 3.3 24 31-54 6-29 (184)
202 3umf_A Adenylate kinase; rossm 62.2 3.2 0.00011 38.8 2.0 24 31-54 33-56 (217)
203 3iij_A Coilin-interacting nucl 62.2 4.4 0.00015 35.9 3.0 26 29-54 13-38 (180)
204 2dhr_A FTSH; AAA+ protein, hex 61.8 4.9 0.00017 42.5 3.6 32 29-60 66-97 (499)
205 1e9r_A Conjugal transfer prote 61.7 6.6 0.00023 40.4 4.6 41 26-66 52-95 (437)
206 3dl0_A Adenylate kinase; phosp 61.5 4.8 0.00016 36.8 3.2 24 31-54 4-27 (216)
207 2rhm_A Putative kinase; P-loop 61.3 4.8 0.00016 35.9 3.1 25 30-54 8-32 (193)
208 1via_A Shikimate kinase; struc 61.3 4.6 0.00016 35.6 2.9 26 29-54 6-31 (175)
209 3fb4_A Adenylate kinase; psych 60.8 4.9 0.00017 36.7 3.1 24 31-54 4-27 (216)
210 2v1u_A Cell division control p 60.2 7.5 0.00026 38.7 4.6 24 28-51 45-68 (387)
211 1ojl_A Transcriptional regulat 60.1 6.3 0.00022 38.6 3.9 32 27-58 25-59 (304)
212 1zuh_A Shikimate kinase; alpha 59.7 5.9 0.0002 34.6 3.3 24 32-55 12-35 (168)
213 1e6c_A Shikimate kinase; phosp 59.6 5.1 0.00018 35.0 2.9 24 31-54 6-29 (173)
214 1qf9_A UMP/CMP kinase, protein 59.6 5.1 0.00018 35.5 2.9 23 30-52 9-31 (194)
215 2c95_A Adenylate kinase 1; tra 59.5 5.1 0.00017 35.8 2.9 26 29-54 11-36 (196)
216 2bwj_A Adenylate kinase 5; pho 59.3 6.2 0.00021 35.3 3.5 24 29-52 14-37 (199)
217 2cdn_A Adenylate kinase; phosp 59.3 5.4 0.00018 36.1 3.0 25 30-54 23-47 (201)
218 1u94_A RECA protein, recombina 58.9 7.1 0.00024 39.3 4.1 34 31-64 67-103 (356)
219 1w4r_A Thymidine kinase; type 58.9 8.3 0.00028 35.3 4.2 31 31-61 24-57 (195)
220 1tev_A UMP-CMP kinase; ploop, 58.8 5.4 0.00018 35.5 2.9 23 31-53 7-29 (196)
221 1v5w_A DMC1, meiotic recombina 58.8 11 0.00037 37.6 5.5 32 31-62 126-166 (343)
222 1kag_A SKI, shikimate kinase I 58.7 6.2 0.00021 34.5 3.3 23 30-52 7-29 (173)
223 3te6_A Regulatory protein SIR3 58.7 2.9 0.0001 41.5 1.2 24 28-51 46-69 (318)
224 3kl4_A SRP54, signal recogniti 58.6 12 0.00042 38.6 6.0 31 29-59 99-132 (433)
225 3cm0_A Adenylate kinase; ATP-b 58.6 5.4 0.00019 35.3 2.9 23 30-52 7-29 (186)
226 1gvn_B Zeta; postsegregational 58.3 5.7 0.00019 38.6 3.2 30 30-59 36-65 (287)
227 2w0m_A SSO2452; RECA, SSPF, un 58.1 14 0.00047 33.7 5.8 43 30-73 26-71 (235)
228 3io5_A Recombination and repai 58.0 7 0.00024 38.8 3.7 35 31-65 32-71 (333)
229 2i1q_A DNA repair and recombin 57.8 10 0.00035 37.2 5.1 44 31-74 102-165 (322)
230 1zp6_A Hypothetical protein AT 57.6 6.3 0.00022 35.1 3.2 28 30-57 12-39 (191)
231 1n0w_A DNA repair protein RAD5 57.4 7.3 0.00025 36.0 3.7 32 30-61 27-67 (243)
232 1zd8_A GTP:AMP phosphotransfer 57.4 5.8 0.0002 36.7 3.0 25 29-53 9-33 (227)
233 1aky_A Adenylate kinase; ATP:A 57.3 5.8 0.0002 36.5 2.9 24 30-53 7-30 (220)
234 3a4m_A L-seryl-tRNA(SEC) kinas 56.8 7.4 0.00025 37.0 3.7 28 31-58 8-38 (260)
235 1ly1_A Polynucleotide kinase; 56.6 4.9 0.00017 35.3 2.2 19 31-49 6-24 (181)
236 2pt5_A Shikimate kinase, SK; a 56.4 7.2 0.00025 33.8 3.3 24 31-54 4-27 (168)
237 3bh0_A DNAB-like replicative h 56.3 12 0.0004 36.9 5.1 44 30-74 71-117 (315)
238 2r8r_A Sensor protein; KDPD, P 56.1 8.1 0.00028 36.2 3.7 41 29-69 8-52 (228)
239 3be4_A Adenylate kinase; malar 56.0 6.2 0.00021 36.3 2.9 25 30-54 8-32 (217)
240 1e4v_A Adenylate kinase; trans 55.4 6.8 0.00023 35.8 3.1 23 31-53 4-26 (214)
241 1ak2_A Adenylate kinase isoenz 55.3 6.4 0.00022 36.6 2.9 24 30-53 19-42 (233)
242 3t61_A Gluconokinase; PSI-biol 55.2 6.9 0.00024 35.3 3.1 23 30-52 21-43 (202)
243 2vli_A Antibiotic resistance p 55.0 5.8 0.0002 35.0 2.5 26 31-56 9-34 (183)
244 1nks_A Adenylate kinase; therm 54.9 6.9 0.00024 34.6 3.0 22 31-52 5-26 (194)
245 1kht_A Adenylate kinase; phosp 54.8 5.4 0.00018 35.4 2.2 23 30-52 6-28 (192)
246 3u4q_B ATP-dependent helicase/ 54.8 12 0.0004 44.0 5.6 46 30-76 4-55 (1166)
247 1in4_A RUVB, holliday junction 54.5 7.8 0.00027 38.4 3.5 27 28-54 52-78 (334)
248 1y63_A LMAJ004144AAA protein; 54.3 5.7 0.0002 35.5 2.3 22 29-50 12-33 (184)
249 2p5t_B PEZT; postsegregational 54.1 5.6 0.00019 37.7 2.3 31 30-60 35-65 (253)
250 3pxg_A Negative regulator of g 53.8 4.2 0.00014 42.6 1.5 27 25-51 199-225 (468)
251 1ukz_A Uridylate kinase; trans 53.5 7.7 0.00026 35.0 3.1 24 30-53 18-41 (203)
252 1sxj_C Activator 1 40 kDa subu 53.2 7.8 0.00027 38.3 3.3 23 29-51 48-70 (340)
253 2q6t_A DNAB replication FORK h 52.8 13 0.00045 38.4 5.1 48 31-79 204-256 (444)
254 1zak_A Adenylate kinase; ATP:A 52.8 6.3 0.00021 36.3 2.4 24 30-53 8-31 (222)
255 2zr9_A Protein RECA, recombina 52.6 9.6 0.00033 38.2 3.9 38 30-68 64-104 (349)
256 2orv_A Thymidine kinase; TP4A 52.6 10 0.00036 35.6 3.8 33 31-63 23-58 (234)
257 1xp8_A RECA protein, recombina 52.4 10 0.00034 38.4 3.9 38 31-69 78-118 (366)
258 2jaq_A Deoxyguanosine kinase; 52.3 8.6 0.00029 34.4 3.2 24 31-54 4-27 (205)
259 1cke_A CK, MSSA, protein (cyti 52.2 8.4 0.00029 35.3 3.2 23 30-52 8-30 (227)
260 1sxj_D Activator 1 41 kDa subu 52.1 6.8 0.00023 38.7 2.6 48 28-75 59-113 (353)
261 3e2i_A Thymidine kinase; Zn-bi 51.6 12 0.0004 34.9 3.9 33 30-62 31-66 (219)
262 4a1f_A DNAB helicase, replicat 51.6 15 0.00052 36.5 5.1 42 31-73 50-94 (338)
263 2bdt_A BH3686; alpha-beta prot 51.5 10 0.00035 33.7 3.5 20 31-50 6-25 (189)
264 1ex7_A Guanylate kinase; subst 51.4 9.1 0.00031 34.6 3.1 22 31-52 5-26 (186)
265 2px0_A Flagellar biosynthesis 51.2 11 0.00038 36.7 4.0 31 29-59 107-141 (296)
266 2z0h_A DTMP kinase, thymidylat 51.0 11 0.00038 33.4 3.8 26 32-57 5-33 (197)
267 1knq_A Gluconate kinase; ALFA/ 50.8 9.6 0.00033 33.4 3.2 23 30-52 11-33 (175)
268 1g8p_A Magnesium-chelatase 38 50.8 5 0.00017 39.7 1.4 26 27-52 45-70 (350)
269 1r6b_X CLPA protein; AAA+, N-t 50.8 8.5 0.00029 42.8 3.4 28 30-57 491-518 (758)
270 3tau_A Guanylate kinase, GMP k 50.7 7 0.00024 35.7 2.3 21 31-51 12-32 (208)
271 2qby_A CDC6 homolog 1, cell di 50.5 9.2 0.00031 38.0 3.4 24 28-51 46-69 (386)
272 2ehv_A Hypothetical protein PH 50.4 14 0.00047 34.3 4.4 32 30-61 33-68 (251)
273 2xb4_A Adenylate kinase; ATP-b 50.2 8.7 0.0003 35.5 2.9 23 31-53 4-26 (223)
274 3cmw_A Protein RECA, recombina 49.9 26 0.00088 42.6 7.5 80 31-136 1435-1517(1706)
275 1kgd_A CASK, peripheral plasma 49.9 7.5 0.00026 34.6 2.3 21 30-50 8-28 (180)
276 1njg_A DNA polymerase III subu 49.6 6.8 0.00023 35.7 2.1 22 30-51 48-69 (250)
277 3tlx_A Adenylate kinase 2; str 49.4 7.2 0.00025 36.7 2.2 25 29-53 31-55 (243)
278 3u4q_A ATP-dependent helicase/ 49.1 13 0.00043 44.1 4.7 48 29-76 25-81 (1232)
279 2chq_A Replication factor C sm 48.5 7.4 0.00025 37.6 2.2 23 29-51 40-62 (319)
280 1fnn_A CDC6P, cell division co 48.1 11 0.00037 37.7 3.4 23 29-51 46-68 (389)
281 2r6a_A DNAB helicase, replicat 48.1 18 0.00062 37.5 5.3 42 30-72 206-251 (454)
282 3bgw_A DNAB-like replicative h 48.0 11 0.00037 39.2 3.4 43 30-73 200-245 (444)
283 3m6a_A ATP-dependent protease 47.4 11 0.00036 40.4 3.4 29 30-58 111-139 (543)
284 2pbr_A DTMP kinase, thymidylat 47.0 14 0.00049 32.5 3.8 27 31-57 4-33 (195)
285 1vma_A Cell division protein F 46.9 15 0.00051 36.1 4.1 30 30-59 107-139 (306)
286 1uf9_A TT1252 protein; P-loop, 46.8 12 0.00041 33.4 3.2 21 30-50 11-31 (203)
287 2grj_A Dephospho-COA kinase; T 46.8 12 0.00041 33.9 3.2 34 32-68 17-50 (192)
288 4eun_A Thermoresistant glucoki 46.7 12 0.00041 33.8 3.2 23 30-52 32-54 (200)
289 1g5t_A COB(I)alamin adenosyltr 46.6 13 0.00044 34.0 3.3 29 32-60 33-64 (196)
290 3pxi_A Negative regulator of g 46.3 11 0.00038 41.9 3.5 22 30-51 524-545 (758)
291 2pez_A Bifunctional 3'-phospho 46.1 15 0.00052 32.2 3.8 28 31-58 9-39 (179)
292 2xxa_A Signal recognition part 45.7 14 0.00048 38.2 3.9 31 30-60 103-137 (433)
293 1nlf_A Regulatory protein REPA 45.5 17 0.00059 34.7 4.3 44 30-74 33-89 (279)
294 1jjv_A Dephospho-COA kinase; P 45.5 12 0.00041 33.8 3.0 21 31-52 6-26 (206)
295 1ypw_A Transitional endoplasmi 45.5 11 0.00037 42.5 3.2 32 28-59 239-270 (806)
296 3tr0_A Guanylate kinase, GMP k 45.2 9.6 0.00033 34.2 2.3 20 31-50 11-30 (205)
297 2v54_A DTMP kinase, thymidylat 45.1 13 0.00044 33.3 3.1 27 31-57 8-35 (204)
298 3ake_A Cytidylate kinase; CMP 45.0 14 0.00046 33.2 3.3 22 31-52 6-27 (208)
299 1sxj_B Activator 1 37 kDa subu 45.0 10 0.00036 36.6 2.7 22 29-50 44-65 (323)
300 1zu4_A FTSY; GTPase, signal re 44.9 16 0.00053 36.1 3.9 30 30-59 108-140 (320)
301 1cr0_A DNA primase/helicase; R 44.7 14 0.00048 35.6 3.6 42 30-72 38-83 (296)
302 2if2_A Dephospho-COA kinase; a 44.6 13 0.00045 33.3 3.2 21 31-52 5-25 (204)
303 3gmt_A Adenylate kinase; ssgci 44.4 14 0.00048 34.7 3.3 24 31-54 12-35 (230)
304 3ber_A Probable ATP-dependent 44.3 66 0.0023 29.9 8.2 66 330-400 111-192 (249)
305 1iqp_A RFCS; clamp loader, ext 44.3 12 0.00043 36.1 3.1 23 29-51 48-70 (327)
306 1qvr_A CLPB protein; coiled co 44.0 10 0.00035 42.9 2.7 23 29-51 590-612 (854)
307 1pzn_A RAD51, DNA repair and r 43.2 17 0.00058 36.3 4.0 31 31-61 135-174 (349)
308 1lvg_A Guanylate kinase, GMP k 43.2 9.6 0.00033 34.5 1.9 22 28-49 5-26 (198)
309 2qor_A Guanylate kinase; phosp 43.2 11 0.00038 34.1 2.4 21 31-51 16-36 (204)
310 2j37_W Signal recognition part 43.1 24 0.00081 37.3 5.2 33 28-60 102-137 (504)
311 2gno_A DNA polymerase III, gam 43.0 34 0.0012 33.4 6.0 24 26-49 17-40 (305)
312 3pxi_A Negative regulator of g 42.6 9.5 0.00032 42.5 2.1 27 25-51 199-225 (758)
313 2p6n_A ATP-dependent RNA helic 42.4 45 0.0015 29.8 6.4 65 35-103 37-111 (191)
314 2j41_A Guanylate kinase; GMP, 42.4 11 0.00039 33.7 2.3 20 31-50 10-29 (207)
315 2eyu_A Twitching motility prot 42.4 11 0.00039 35.9 2.4 20 29-48 27-46 (261)
316 2v9p_A Replication protein E1; 42.3 8.4 0.00029 37.9 1.5 34 27-60 126-159 (305)
317 3nbx_X ATPase RAVA; AAA+ ATPas 42.2 11 0.00038 39.8 2.5 26 27-52 41-66 (500)
318 2yvu_A Probable adenylyl-sulfa 41.6 18 0.00062 31.9 3.5 29 30-58 16-47 (186)
319 3r20_A Cytidylate kinase; stru 41.5 16 0.00053 34.4 3.2 24 29-52 11-34 (233)
320 1rz3_A Hypothetical protein rb 41.4 19 0.00067 32.4 3.8 29 30-58 25-56 (201)
321 1sxj_E Activator 1 40 kDa subu 41.3 8.5 0.00029 38.1 1.3 22 29-50 38-59 (354)
322 1qvr_A CLPB protein; coiled co 40.8 14 0.00049 41.7 3.3 26 26-51 190-215 (854)
323 4a74_A DNA repair and recombin 40.7 12 0.00042 34.0 2.3 20 30-49 28-47 (231)
324 2v3c_C SRP54, signal recogniti 40.6 12 0.00042 38.6 2.5 30 30-59 102-134 (432)
325 2plr_A DTMP kinase, probable t 40.5 13 0.00044 33.5 2.3 23 31-53 8-30 (213)
326 3uie_A Adenylyl-sulfate kinase 40.1 13 0.00045 33.5 2.3 21 31-51 29-49 (200)
327 3ney_A 55 kDa erythrocyte memb 40.1 12 0.00041 34.2 2.1 22 30-51 22-43 (197)
328 3nwj_A ATSK2; P loop, shikimat 39.9 17 0.00058 34.5 3.2 28 27-54 48-75 (250)
329 3a00_A Guanylate kinase, GMP k 39.7 13 0.00045 33.0 2.3 19 31-49 5-23 (186)
330 4ag6_A VIRB4 ATPase, type IV s 39.5 20 0.00067 36.2 3.8 39 26-64 34-75 (392)
331 1wp9_A ATP-dependent RNA helic 39.4 66 0.0023 32.3 8.0 67 328-400 50-131 (494)
332 4e22_A Cytidylate kinase; P-lo 39.4 18 0.00062 34.1 3.3 24 30-53 30-53 (252)
333 3fe2_A Probable ATP-dependent 39.1 66 0.0022 29.6 7.2 67 329-400 101-182 (242)
334 2qt1_A Nicotinamide riboside k 38.7 14 0.00048 33.4 2.3 22 30-51 24-45 (207)
335 3p8c_D Wiskott-aldrich syndrom 38.5 20 0.00069 34.5 3.4 64 8-73 167-230 (279)
336 2fna_A Conserved hypothetical 38.2 20 0.00068 35.0 3.5 31 29-59 32-62 (357)
337 1uj2_A Uridine-cytidine kinase 37.9 22 0.00074 33.4 3.6 24 30-53 25-48 (252)
338 1ypw_A Transitional endoplasmi 37.9 11 0.00036 42.5 1.6 27 28-54 512-538 (806)
339 2jgn_A DBX, DDX3, ATP-dependen 37.8 87 0.003 27.6 7.6 64 36-103 28-103 (185)
340 3c8u_A Fructokinase; YP_612366 37.7 14 0.00049 33.5 2.2 21 29-49 24-44 (208)
341 3jvv_A Twitching mobility prot 37.6 13 0.00045 37.3 2.1 20 29-48 125-144 (356)
342 4akg_A Glutathione S-transfera 37.6 19 0.00065 45.9 3.9 50 27-76 1267-1318(2695)
343 4dzz_A Plasmid partitioning pr 37.3 21 0.00073 31.8 3.4 26 34-59 9-37 (206)
344 3asz_A Uridine kinase; cytidin 37.3 20 0.00068 32.3 3.1 21 30-50 9-29 (211)
345 2h92_A Cytidylate kinase; ross 37.0 21 0.00073 32.3 3.3 23 31-53 7-29 (219)
346 3kta_A Chromosome segregation 36.8 15 0.00052 32.2 2.2 20 30-49 29-48 (182)
347 1j8m_F SRP54, signal recogniti 36.8 24 0.0008 34.4 3.7 30 31-60 102-134 (297)
348 1byi_A Dethiobiotin synthase; 36.7 23 0.00079 32.2 3.5 26 35-60 10-38 (224)
349 3cmw_A Protein RECA, recombina 36.7 20 0.00067 43.6 3.7 40 30-70 1085-1127(1706)
350 1vht_A Dephospho-COA kinase; s 36.5 21 0.00072 32.4 3.2 19 31-49 8-26 (218)
351 2ewv_A Twitching motility prot 36.4 14 0.00047 37.3 2.0 31 29-59 138-172 (372)
352 1t6n_A Probable ATP-dependent 36.3 89 0.003 28.0 7.6 67 330-400 82-164 (220)
353 1dek_A Deoxynucleoside monopho 35.9 27 0.00091 33.0 3.8 40 32-73 6-45 (241)
354 1svm_A Large T antigen; AAA+ f 35.8 23 0.00077 35.9 3.5 33 28-60 170-202 (377)
355 3fdi_A Uncharacterized protein 35.8 24 0.00082 32.0 3.4 31 31-65 10-40 (201)
356 1a5t_A Delta prime, HOLB; zinc 35.8 24 0.00083 34.7 3.7 23 30-52 27-49 (334)
357 4gp7_A Metallophosphoesterase; 35.6 14 0.00046 32.5 1.6 16 31-46 13-28 (171)
358 3ly5_A ATP-dependent RNA helic 35.3 1.5E+02 0.0051 27.6 9.2 67 329-400 125-207 (262)
359 1ls1_A Signal recognition part 35.2 28 0.00095 33.8 3.9 28 32-59 103-133 (295)
360 1f2t_A RAD50 ABC-ATPase; DNA d 35.1 17 0.00059 31.2 2.2 16 30-45 26-41 (149)
361 1q57_A DNA primase/helicase; d 35.1 23 0.0008 37.1 3.6 42 31-73 246-291 (503)
362 1p9r_A General secretion pathw 35.1 15 0.00052 37.8 2.1 20 30-49 170-189 (418)
363 3dtp_E RLC, myosin regulatory 34.7 9.8 0.00033 34.1 0.5 28 14-41 6-33 (196)
364 1jr3_A DNA polymerase III subu 34.6 17 0.00057 36.0 2.3 23 30-52 41-63 (373)
365 1gku_B Reverse gyrase, TOP-RG; 34.5 85 0.0029 36.3 8.5 85 313-400 82-181 (1054)
366 1xjc_A MOBB protein homolog; s 34.4 32 0.0011 30.4 3.9 30 31-60 8-40 (169)
367 3b9q_A Chloroplast SRP recepto 34.3 29 0.00099 33.8 3.9 29 31-59 104-135 (302)
368 1q3t_A Cytidylate kinase; nucl 34.3 24 0.00082 32.7 3.2 23 30-52 19-41 (236)
369 2oap_1 GSPE-2, type II secreti 34.1 14 0.00047 39.1 1.6 20 30-49 263-282 (511)
370 3iuy_A Probable ATP-dependent 33.9 49 0.0017 30.0 5.3 67 329-400 93-173 (228)
371 2gxq_A Heat resistant RNA depe 33.7 78 0.0027 27.9 6.6 67 329-400 71-150 (207)
372 3q9l_A Septum site-determining 33.6 26 0.00088 32.6 3.4 26 34-59 10-38 (260)
373 3lnc_A Guanylate kinase, GMP k 33.1 13 0.00046 34.2 1.2 18 31-48 31-48 (231)
374 2bbw_A Adenylate kinase 4, AK4 33.1 19 0.00065 33.6 2.3 25 28-52 28-52 (246)
375 2pl3_A Probable ATP-dependent 32.9 73 0.0025 29.0 6.4 66 329-400 96-177 (236)
376 2gza_A Type IV secretion syste 32.9 17 0.00058 36.5 2.0 22 28-49 176-197 (361)
377 2oxc_A Probable ATP-dependent 32.7 71 0.0024 29.0 6.3 66 329-400 91-172 (230)
378 1rj9_A FTSY, signal recognitio 32.5 31 0.0011 33.7 3.8 31 29-59 104-137 (304)
379 1z6g_A Guanylate kinase; struc 32.2 21 0.0007 32.8 2.3 20 30-49 26-45 (218)
380 1g3q_A MIND ATPase, cell divis 32.2 30 0.001 31.7 3.5 27 34-60 10-39 (237)
381 2ffh_A Protein (FFH); SRP54, s 32.1 32 0.0011 35.4 4.0 29 31-59 102-133 (425)
382 2wwf_A Thymidilate kinase, put 31.8 21 0.00072 32.1 2.3 20 31-50 14-33 (212)
383 1ltq_A Polynucleotide kinase; 31.7 28 0.00094 33.4 3.3 20 31-50 6-25 (301)
384 1nrj_B SR-beta, signal recogni 31.6 16 0.00053 33.1 1.4 25 25-49 10-34 (218)
385 2f1r_A Molybdopterin-guanine d 31.6 12 0.00042 33.2 0.6 20 30-49 5-24 (171)
386 2f6r_A COA synthase, bifunctio 31.5 26 0.00088 33.7 3.0 21 31-52 79-99 (281)
387 1yrb_A ATP(GTP)binding protein 31.5 31 0.001 32.2 3.5 31 29-59 16-48 (262)
388 3ea0_A ATPase, para family; al 31.3 28 0.00097 32.0 3.2 26 34-59 12-41 (245)
389 3e70_C DPA, signal recognition 31.2 37 0.0013 33.6 4.1 30 30-59 132-164 (328)
390 1yks_A Genome polyprotein [con 31.2 64 0.0022 33.0 6.2 52 48-103 173-230 (440)
391 1ye8_A Protein THEP1, hypothet 31.1 22 0.00077 31.5 2.3 20 30-49 3-22 (178)
392 1znw_A Guanylate kinase, GMP k 31.1 22 0.00076 32.1 2.3 22 329-350 177-198 (207)
393 2ph1_A Nucleotide-binding prot 31.0 31 0.0011 32.4 3.5 26 34-59 26-54 (262)
394 3kjh_A CO dehydrogenase/acetyl 31.0 20 0.0007 33.0 2.1 26 33-58 6-34 (254)
395 1nn5_A Similar to deoxythymidy 30.8 21 0.0007 32.2 2.1 21 30-50 12-32 (215)
396 3h5i_A Response regulator/sens 30.5 1.4E+02 0.0047 24.1 7.3 100 317-420 19-123 (140)
397 2fh5_B SR-beta, signal recogni 29.8 21 0.00072 32.1 2.0 25 25-49 5-29 (214)
398 1cp2_A CP2, nitrogenase iron p 29.8 31 0.001 32.4 3.2 25 34-58 8-35 (269)
399 1r6b_X CLPA protein; AAA+, N-t 29.8 29 0.001 38.4 3.4 25 26-50 206-230 (758)
400 3f9v_A Minichromosome maintena 29.7 17 0.00057 39.3 1.4 23 29-51 329-351 (595)
401 3end_A Light-independent proto 29.7 32 0.0011 33.2 3.4 25 34-58 48-75 (307)
402 3zq6_A Putative arsenical pump 29.6 35 0.0012 33.4 3.7 27 34-60 21-50 (324)
403 3bfv_A CAPA1, CAPB2, membrane 29.4 35 0.0012 32.6 3.5 24 35-58 91-117 (271)
404 3lda_A DNA repair protein RAD5 29.3 64 0.0022 32.8 5.7 32 31-62 182-222 (400)
405 2og2_A Putative signal recogni 29.1 39 0.0013 33.8 3.9 30 30-59 160-192 (359)
406 1sq5_A Pantothenate kinase; P- 28.9 38 0.0013 32.9 3.8 18 32-49 85-102 (308)
407 1xti_A Probable ATP-dependent 28.9 1.2E+02 0.0042 29.6 7.7 67 330-400 76-158 (391)
408 3auy_A DNA double-strand break 28.7 23 0.00079 35.5 2.2 14 30-43 28-41 (371)
409 1odf_A YGR205W, hypothetical 3 28.4 25 0.00086 34.0 2.3 19 31-49 35-53 (290)
410 2afh_E Nitrogenase iron protei 28.4 35 0.0012 32.5 3.4 25 34-58 9-36 (289)
411 2oze_A ORF delta'; para, walke 28.3 48 0.0016 31.6 4.4 24 35-58 45-71 (298)
412 3cio_A ETK, tyrosine-protein k 28.1 36 0.0012 33.0 3.4 24 36-59 114-140 (299)
413 3ug7_A Arsenical pump-driving 27.8 39 0.0013 33.6 3.6 27 34-60 33-62 (349)
414 1hyq_A MIND, cell division inh 27.6 41 0.0014 31.3 3.7 26 34-59 10-38 (263)
415 2db3_A ATP-dependent RNA helic 27.2 1E+02 0.0034 31.3 6.8 66 330-400 129-209 (434)
416 1w5s_A Origin recognition comp 27.1 28 0.00096 34.8 2.5 22 29-50 52-75 (412)
417 1ihu_A Arsenical pump-driving 27.1 38 0.0013 36.2 3.7 30 31-60 12-44 (589)
418 1wcv_1 SOJ, segregation protei 27.1 30 0.001 32.4 2.6 25 34-58 14-41 (257)
419 3zvl_A Bifunctional polynucleo 26.9 23 0.0008 36.2 1.9 22 31-52 262-283 (416)
420 1m7g_A Adenylylsulfate kinase; 26.9 27 0.00091 31.6 2.1 20 31-50 29-48 (211)
421 1wrb_A DJVLGB; RNA helicase, D 26.9 1.1E+02 0.0039 28.0 6.7 66 330-400 100-180 (253)
422 2xj4_A MIPZ; replication, cell 26.9 39 0.0013 32.3 3.4 25 34-58 12-39 (286)
423 3cwq_A Para family chromosome 26.6 37 0.0013 30.8 3.0 36 34-71 8-48 (209)
424 2l82_A Designed protein OR32; 26.5 1.3E+02 0.0044 24.3 5.7 41 333-373 5-50 (162)
425 2pt7_A CAG-ALFA; ATPase, prote 26.4 22 0.00075 35.2 1.5 21 28-48 172-192 (330)
426 3tqc_A Pantothenate kinase; bi 26.3 48 0.0017 32.6 4.0 18 32-49 97-114 (321)
427 3k9g_A PF-32 protein; ssgcid, 26.1 38 0.0013 31.7 3.1 25 34-58 35-61 (267)
428 2jeo_A Uridine-cytidine kinase 26.0 30 0.001 32.2 2.3 21 31-51 29-49 (245)
429 1tf7_A KAIC; homohexamer, hexa 25.9 65 0.0022 33.9 5.2 42 30-72 284-328 (525)
430 2v1x_A ATP-dependent DNA helic 25.9 98 0.0034 33.1 6.7 72 329-400 83-171 (591)
431 1nij_A Hypothetical protein YJ 25.7 40 0.0014 32.9 3.3 32 30-61 7-39 (318)
432 1oyw_A RECQ helicase, ATP-depe 25.7 96 0.0033 32.5 6.5 71 329-400 64-145 (523)
433 3p32_A Probable GTPase RV1496/ 25.6 49 0.0017 32.8 4.0 31 29-59 81-114 (355)
434 2hjv_A ATP-dependent RNA helic 25.3 1.5E+02 0.0052 25.1 6.8 65 38-107 20-95 (163)
435 2v6i_A RNA helicase; membrane, 25.2 71 0.0024 32.6 5.2 52 48-103 167-224 (431)
436 3tqf_A HPR(Ser) kinase; transf 25.0 32 0.0011 30.8 2.1 21 30-50 19-39 (181)
437 3vkg_A Dynein heavy chain, cyt 25.0 40 0.0014 43.6 3.7 39 25-63 1302-1340(3245)
438 3la6_A Tyrosine-protein kinase 24.9 43 0.0015 32.2 3.3 25 34-58 100-127 (286)
439 1t5i_A C_terminal domain of A 24.9 1.5E+02 0.0052 25.5 6.8 65 38-107 16-91 (172)
440 1gtv_A TMK, thymidylate kinase 24.8 17 0.00058 32.8 0.3 21 31-51 4-24 (214)
441 3qks_A DNA double-strand break 24.8 32 0.0011 31.1 2.2 18 29-46 25-42 (203)
442 2woo_A ATPase GET3; tail-ancho 24.8 45 0.0015 32.8 3.4 27 33-59 25-54 (329)
443 2rb4_A ATP-dependent RNA helic 24.6 82 0.0028 27.3 4.9 48 52-103 34-91 (175)
444 1vec_A ATP-dependent RNA helic 24.6 1.5E+02 0.0053 25.8 6.9 67 329-400 70-152 (206)
445 1h65_A Chloroplast outer envel 24.4 45 0.0015 31.5 3.3 22 27-48 39-60 (270)
446 3of5_A Dethiobiotin synthetase 24.3 50 0.0017 30.6 3.5 24 35-58 13-39 (228)
447 3k1j_A LON protease, ATP-depen 23.8 30 0.001 37.3 2.1 24 28-51 61-84 (604)
448 1fuk_A Eukaryotic initiation f 23.7 1.7E+02 0.0059 24.8 6.8 60 40-103 17-87 (165)
449 4eaq_A DTMP kinase, thymidylat 23.5 36 0.0012 31.5 2.3 22 31-52 30-51 (229)
450 3cmu_A Protein RECA, recombina 23.5 43 0.0015 41.4 3.5 39 30-69 1084-1125(2050)
451 3cnb_A DNA-binding response re 23.4 1.3E+02 0.0046 24.0 5.8 101 317-423 22-132 (143)
452 3bor_A Human initiation factor 23.3 97 0.0033 28.3 5.3 68 329-400 97-179 (237)
453 2ocp_A DGK, deoxyguanosine kin 23.1 52 0.0018 30.3 3.4 23 31-53 6-28 (241)
454 2i3b_A HCR-ntpase, human cance 23.0 38 0.0013 30.4 2.3 17 31-47 5-21 (189)
455 3eaq_A Heat resistant RNA depe 22.9 2.4E+02 0.0082 25.2 7.9 63 37-103 15-88 (212)
456 1qde_A EIF4A, translation init 22.9 73 0.0025 28.6 4.3 66 329-400 81-161 (224)
457 3aez_A Pantothenate kinase; tr 22.6 37 0.0013 33.2 2.3 17 32-48 95-111 (312)
458 3fwy_A Light-independent proto 22.5 52 0.0018 32.2 3.4 30 29-58 49-82 (314)
459 3qxc_A Dethiobiotin synthetase 22.4 58 0.002 30.5 3.5 30 29-58 22-56 (242)
460 1s96_A Guanylate kinase, GMP k 22.3 39 0.0013 31.1 2.3 19 31-49 20-38 (219)
461 2yhs_A FTSY, cell division pro 22.2 61 0.0021 34.0 3.9 29 30-58 296-327 (503)
462 3qkt_A DNA double-strand break 22.2 37 0.0013 33.5 2.2 17 30-46 26-42 (339)
463 3ez2_A Plasmid partition prote 22.2 49 0.0017 33.3 3.2 25 34-58 116-149 (398)
464 2j48_A Two-component sensor ki 22.0 1.4E+02 0.0048 22.6 5.5 99 317-420 15-117 (119)
465 3tmk_A Thymidylate kinase; pho 21.7 60 0.0021 29.8 3.4 28 33-60 11-39 (216)
466 3qf7_A RAD50; ABC-ATPase, ATPa 21.5 37 0.0013 34.0 2.1 14 30-43 26-39 (365)
467 3pg5_A Uncharacterized protein 21.4 41 0.0014 33.5 2.4 25 34-58 9-36 (361)
468 1np6_A Molybdopterin-guanine d 21.4 44 0.0015 29.6 2.3 20 30-49 9-28 (174)
469 3bs4_A Uncharacterized protein 21.3 87 0.003 29.7 4.5 45 31-76 25-72 (260)
470 3b85_A Phosphate starvation-in 21.1 40 0.0014 30.7 2.1 17 29-45 24-40 (208)
471 2qen_A Walker-type ATPase; unk 21.0 58 0.002 31.4 3.4 29 28-58 32-60 (350)
472 3fkq_A NTRC-like two-domain pr 20.6 56 0.0019 32.6 3.2 33 27-59 142-179 (373)
473 3hdt_A Putative kinase; struct 20.6 59 0.002 30.0 3.1 32 32-67 19-50 (223)
474 2vp4_A Deoxynucleoside kinase; 20.5 45 0.0015 30.7 2.3 27 31-58 24-50 (230)
475 4akg_A Glutathione S-transfera 20.4 48 0.0016 42.3 3.1 31 30-60 648-678 (2695)
476 3iqw_A Tail-anchored protein t 20.1 64 0.0022 31.8 3.5 27 34-60 23-52 (334)
477 3grc_A Sensor protein, kinase; 20.1 1.4E+02 0.0048 23.9 5.2 103 317-423 20-129 (140)
478 3a10_A Response regulator; pho 20.1 2.9E+02 0.0099 20.9 7.2 90 329-419 24-115 (116)
479 2ga8_A Hypothetical 39.9 kDa p 20.0 44 0.0015 33.5 2.2 22 29-50 26-47 (359)
No 1
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.8e-45 Score=391.61 Aligned_cols=318 Identities=27% Similarity=0.391 Sum_probs=260.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCc-EEEEecCcccCCCCCcEEEEcccc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSM-ICRFTSEAKDKPMGCGILVTTYSM 106 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~-I~~~~g~~~~~~~~~~IvItTy~~ 106 (552)
+..++++|||+|||++++.++...+.++|||||+++|+.||.++|.+| + .. +.+++|+... ..+|+|+||++
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~-~---~~~v~~~~g~~~~---~~~Ivv~T~~~ 181 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-G---EEYVGEFSGRIKE---LKPLTVSTYDS 181 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGG-C---GGGEEEBSSSCBC---CCSEEEEEHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhC-C---CcceEEECCCcCC---cCCEEEEEcHH
Confidence 358999999999999999999988999999999999999999999995 3 35 8999887754 47899999998
Q ss_pred cccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCCcc
Q psy11640 107 ISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHI 186 (552)
Q Consensus 107 l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i 186 (552)
+... .+.+ ...|++||+||+|+
T Consensus 182 l~~~----------~~~~-~~~~~liIvDEaH~----------------------------------------------- 203 (472)
T 2fwr_A 182 AYVN----------AEKL-GNRFMLLIFDEVHH----------------------------------------------- 203 (472)
T ss_dssp HHHT----------HHHH-TTTCSEEEEETGGG-----------------------------------------------
T ss_pred HHHH----------HHHh-cCCCCEEEEECCcC-----------------------------------------------
Confidence 8532 2223 25699999997665
Q ss_pred ccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhhccccccc
Q psy11640 187 FLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEA 266 (552)
Q Consensus 187 ~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~lig~~~~~~ 266 (552)
.....|+.++..+++.++|+|||||.+.|+....+..++||..+..
T Consensus 204 ----------------------------------~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~ 249 (472)
T 2fwr_A 204 ----------------------------------LPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFEL 249 (472)
T ss_dssp ----------------------------------TTSTTTHHHHHTCCCSEEEEEESCCCCTTSGGGSHHHHTCCEEEEC
T ss_pred ----------------------------------CCChHHHHHHHhcCCCeEEEEecCccCCCCHHHHHHHHhCCeEeec
Confidence 3333445567777888999999999999998889999999999999
Q ss_pred CHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhh---------------------------------------hhhh
Q psy11640 267 NWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTS---------------------------------------KRLL 307 (552)
Q Consensus 267 ~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~---------------------------------------~~~~ 307 (552)
.+.++ ..+++.++.+..+.+++++++...|...... ....
T Consensus 250 ~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (472)
T 2fwr_A 250 FPDSL-AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARR 328 (472)
T ss_dssp CHHHH-TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHH
T ss_pred CHHHH-hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99998 6889999988888899988776554321100 0111
Q ss_pred HHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHcCCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccc
Q psy11640 308 LYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVAD 387 (552)
Q Consensus 308 ~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~ 387 (552)
..+..+.|...+.+++..+ .+.++||||+++..++.++..|++..+||+++..+|+++++.|++ |+++|||+|++++
T Consensus 329 ~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~-g~~~vLv~T~~~~ 405 (472)
T 2fwr_A 329 IAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRT-GRFRAIVSSQVLD 405 (472)
T ss_dssp HHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHH-SSCSBCBCSSCCC
T ss_pred HhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhC-CCCCEEEEcCchh
Confidence 2345667889998888875 789999999999999999999999999999999999999999996 8999999999999
Q ss_pred cccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHH
Q psy11640 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453 (552)
Q Consensus 388 ~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~ 453 (552)
+|+|+|++++||+++ +++|+.++.||+||+||.+++|. .|++|+|++.+|+|+.++.+|++
T Consensus 406 ~Gldlp~~~~Vi~~~-~~~s~~~~~Q~~GR~~R~g~~k~----~~~i~~lv~~~t~ee~~~~~r~~ 466 (472)
T 2fwr_A 406 EGIDVPDANVGVIMS-GSGSAREYIQRLGRILRPSKGKK----EAVLYELISRGTGEVNTARRRKN 466 (472)
T ss_dssp SSSCSCCBSEEEEEC-CSSCCHHHHHHHHHSBCCCTTTC----CEEEEEEEECSCC----------
T ss_pred cCcccccCcEEEEEC-CCCCHHHHHHHHhhccCCCCCCc----eEEEEEEEeCCCchHHHHHHHHH
Confidence 999999999999999 59999999999999999998732 69999999999999999998874
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-42 Score=392.83 Aligned_cols=337 Identities=18% Similarity=0.237 Sum_probs=255.4
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------ 93 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------ 93 (552)
+.+.++++.+||+|||+++++++... .+|+||||| ..|+.||.++|.+|+ +...+.+++|....+
T Consensus 254 ~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~--p~~~v~~~~g~~~~r~~~~~~ 330 (800)
T 3mwy_W 254 KGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREY 330 (800)
T ss_dssp TTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS--TTCCEEECCCSSHHHHHHHHH
T ss_pred cCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC--CCceEEEEeCCHHHHHHHHHH
Confidence 45678999999999999999988643 678999999 558999999999998 557888888875421
Q ss_pred ------------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccch
Q psy11640 94 ------------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAK 161 (552)
Q Consensus 94 ------------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~ 161 (552)
....+|+|+||+++.. ....+....|++||+||||+...
T Consensus 331 ~~~~~~~~~~~~~~~~dvvitTy~~l~~----------~~~~l~~~~w~~vIvDEaH~lkn------------------- 381 (800)
T 3mwy_W 331 EFYTNPRAKGKKTMKFNVLLTTYEYILK----------DRAELGSIKWQFMAVDEAHRLKN------------------- 381 (800)
T ss_dssp HSCSCC-----CCCCCSEEEECTTHHHH----------THHHHHTSEEEEEEETTGGGGCC-------------------
T ss_pred HhhccccccccccccCCEEEecHHHHHh----------hHHHHhcCCcceeehhhhhhhcC-------------------
Confidence 1346899999999854 23456667999999998887421
Q ss_pred hhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeee
Q psy11640 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGL 241 (552)
Q Consensus 162 d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgL 241 (552)
+.+...+.+..+.+.++|+|
T Consensus 382 ------------------------------------------------------------~~s~~~~~l~~l~~~~rl~L 401 (800)
T 3mwy_W 382 ------------------------------------------------------------AESSLYESLNSFKVANRMLI 401 (800)
T ss_dssp ------------------------------------------------------------SSSHHHHHHTTSEEEEEEEE
T ss_pred ------------------------------------------------------------chhHHHHHHHHhhhccEEEe
Confidence 12223346667789999999
Q ss_pred cceecccccc--hhh------------------------------hhhhhcccccccCHHHHHHcCCCcceEEEEEEcCC
Q psy11640 242 TATLLREDDK--IAD------------------------------LNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPM 289 (552)
Q Consensus 242 TATp~r~d~~--~~~------------------------------L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l 289 (552)
||||++++.. ... |..+++|.+......++ ...+++.....++++|
T Consensus 402 TgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv--~~~LP~k~~~~v~v~l 479 (800)
T 3mwy_W 402 TGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDV--EKSLPSKTERILRVEL 479 (800)
T ss_dssp CSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGG--TTTSCCEEEEEEEECC
T ss_pred eCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhh--hhccCCcEEEEEEeCC
Confidence 9999876422 111 22223333333333332 2347788888899999
Q ss_pred CHHHHHHHHhhhhh--------------------hhh--------------------------------hHHhcCchhHH
Q psy11640 290 SPEFYREYLVCKTS--------------------KRL--------------------------------LLYVMNPNKYR 317 (552)
Q Consensus 290 ~~~~~~~y~~~~~~--------------------~~~--------------------------------~~~~~~~~K~~ 317 (552)
++.+...|...... ... ......+.|+.
T Consensus 480 s~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~ 559 (800)
T 3mwy_W 480 SDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMV 559 (800)
T ss_dssp CHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHH
Confidence 99887666432110 000 01123567999
Q ss_pred HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCe---eEEEEeCccccc
Q psy11640 318 ATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKV---NTIFVSKVADTS 389 (552)
Q Consensus 318 ~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~---~vLv~T~v~~~G 389 (552)
+|..++..+...|+|+||||+++.+++.|...| .+.+++|+++..+|+++++.|++ ++. .+|++|++|++|
T Consensus 560 ~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~-~~~~~~v~LlSt~agg~G 638 (800)
T 3mwy_W 560 LLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS-PDSNDFVFLLSTRAGGLG 638 (800)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS-TTCSCCCEEEEHHHHTTT
T ss_pred HHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC-CCCCceEEEEecccccCC
Confidence 999999998888999999999999999999998 46789999999999999999996 433 477788999999
Q ss_pred cCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeEee
Q psy11640 390 FDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVIT 466 (552)
Q Consensus 390 lDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v~~ 466 (552)
||||.|++||+++ ++|||..++||+||++|.||.+ +|.||+|++.+|+|+.+..+..+.+ .....++.
T Consensus 639 lNL~~a~~VI~~D-~~wnp~~~~Qa~gR~~RiGQ~k-----~V~Vyrlv~~~TiEe~i~~~~~~K~---~l~~~vi~ 706 (800)
T 3mwy_W 639 INLMTADTVVIFD-SDWNPQADLQAMARAHRIGQKN-----HVMVYRLVSKDTVEEEVLERARKKM---ILEYAIIS 706 (800)
T ss_dssp CCCTTCCEEEESS-CCSCSHHHHHHHTTTSCSSCCS-----CEEEEEEEETTSHHHHHHHHHHHHT---TSCC----
T ss_pred CCccccceEEEec-CCCChhhHHHHHHHHHhcCCCc-----eEEEEEEecCCCHHHHHHHHHHHHH---HHHHHHHc
Confidence 9999999999999 6999999999999999999976 5999999999999999987655443 44444554
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=6.3e-41 Score=363.67 Aligned_cols=343 Identities=20% Similarity=0.272 Sum_probs=246.8
Q ss_pred chhhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCC
Q psy11640 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADD 80 (552)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~ 80 (552)
..+.-|++....-.. .-+..+..++..|||+|||+++++++... .+++|||||+ .|+.||.+||++|+ +.
T Consensus 37 ~L~~~Q~~~v~~l~~--~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~--~~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRF--MNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFA--PH 111 (500)
T ss_dssp CCCHHHHHHHHHHHH--HHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHC--TT
T ss_pred cchHHHHHHHHHHHH--HhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHC--CC
Confidence 344455555432211 11234567888999999999999887643 3689999995 58999999999998 45
Q ss_pred CcEEEEecCcccC-CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCccccc
Q psy11640 81 SMICRFTSEAKDK-PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFG 159 (552)
Q Consensus 81 ~~I~~~~g~~~~~-~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~ 159 (552)
..+.+++|+.... ....+|+|+||+++... . .+....|++||+||||+...
T Consensus 112 ~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~----------~-~l~~~~~~~vIvDEaH~~kn----------------- 163 (500)
T 1z63_A 112 LRFAVFHEDRSKIKLEDYDIILTTYAVLLRD----------T-RLKEVEWKYIVIDEAQNIKN----------------- 163 (500)
T ss_dssp SCEEECSSSTTSCCGGGSSEEEEEHHHHTTC----------H-HHHTCCEEEEEEETGGGGSC-----------------
T ss_pred ceEEEEecCchhccccCCcEEEeeHHHHhcc----------c-hhcCCCcCEEEEeCccccCC-----------------
Confidence 6788888776332 24578999999998653 1 14457899999999887432
Q ss_pred chhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhcccee
Q psy11640 160 AKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKL 239 (552)
Q Consensus 160 ~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~l 239 (552)
+.....+.+..+++.+++
T Consensus 164 --------------------------------------------------------------~~~~~~~~l~~l~~~~~l 181 (500)
T 1z63_A 164 --------------------------------------------------------------PQTKIFKAVKELKSKYRI 181 (500)
T ss_dssp --------------------------------------------------------------TTSHHHHHHHTSCEEEEE
T ss_pred --------------------------------------------------------------HhHHHHHHHHhhccCcEE
Confidence 011122355557788999
Q ss_pred eecceecccccc-hhh----------------------------------hhhhhcccccccCHHHHHHcCCCcceEEEE
Q psy11640 240 GLTATLLREDDK-IAD----------------------------------LNFLIGPKLYEANWLELQKRGFIARVQCAE 284 (552)
Q Consensus 240 gLTATp~r~d~~-~~~----------------------------------L~~lig~~~~~~~~~el~~~g~l~~~~~~~ 284 (552)
+|||||.+++.. ... |..++.|.++.....+......+++.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~ 261 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETN 261 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEE
Confidence 999999886421 111 222223333222222211234577777788
Q ss_pred EEcCCCHHHHHHHHhhhhh---------------------hhhhHHh-------------cCchhHHHHHHHHHHHhhcC
Q psy11640 285 VWCPMSPEFYREYLVCKTS---------------------KRLLLYV-------------MNPNKYRATQYLIAYHERRG 330 (552)
Q Consensus 285 v~~~l~~~~~~~y~~~~~~---------------------~~~~~~~-------------~~~~K~~~l~~Ll~~~~~~g 330 (552)
+++++++++...|...... .+....+ ..+.|+..+.+++......+
T Consensus 262 v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~ 341 (500)
T 1z63_A 262 VYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEG 341 (500)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccC
Confidence 9999999887666432110 0011112 23578888888998877789
Q ss_pred CeEEEEeccHHHHHHHHHHc------CCceEeCCCCHHHHHHHHHhhccCCCee-EEEEeCccccccCCCCCCEEEEecc
Q psy11640 331 DKTIVFSDNVFALKHYAVKM------NKPYIYGPTSQSERIQILQNFKLNPKVN-TIFVSKVADTSFDLPEANVLIQISS 403 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L------~~~~i~G~~~~~eR~~il~~F~~~g~~~-vLv~T~v~~~GlDlp~a~~VI~~~~ 403 (552)
+|+||||+++.+++.+...| ++..+||+++..+|.+++++|+++++++ +|++|+++++|+|+|.|++||+++
T Consensus 342 ~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d- 420 (500)
T 1z63_A 342 DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD- 420 (500)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS-
T ss_pred CcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC-
Confidence 99999999999999988876 4678999999999999999999744676 677789999999999999999999
Q ss_pred CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHH
Q psy11640 404 HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449 (552)
Q Consensus 404 ~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~ 449 (552)
++||+..+.||+||++|.||.+ +|+||+|++.+|+|+.+..
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~-----~v~v~~lv~~~tiee~i~~ 461 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTR-----NVIVHKLISVGTLEEKIDQ 461 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTS-----CEEEEEEEETTSHHHHTHH
T ss_pred CCCCcchHHHHHHHHHHcCCCC-----eeEEEEEEeCCCHHHHHHH
Confidence 6999999999999999999976 5999999999999998775
No 4
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.1e-40 Score=364.51 Aligned_cols=328 Identities=17% Similarity=0.249 Sum_probs=238.5
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc----------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC--
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV----------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-- 93 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~----------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-- 93 (552)
..+.+++..+||+|||+++++++... .+++|||||+ +|+.||.+||.+|++. ...+..+.++.+..
T Consensus 78 ~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~ 155 (644)
T 1z3i_X 78 NSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEID 155 (644)
T ss_dssp TCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHH
T ss_pred CCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHH
Confidence 34567889999999999999988642 2469999996 6999999999999863 23344444433210
Q ss_pred ------------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccch
Q psy11640 94 ------------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAK 161 (552)
Q Consensus 94 ------------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~ 161 (552)
....+|+|+||+++.. ..+.+....|++||+||||+...
T Consensus 156 ~~~~~~~~~~~~~~~~~vvi~ty~~l~~----------~~~~l~~~~~~~vI~DEaH~ikn------------------- 206 (644)
T 1z3i_X 156 SKLVNFISQQGMRIPTPILIISYETFRL----------HAEVLHKGKVGLVICDEGHRLKN------------------- 206 (644)
T ss_dssp HHHHHHHCCCSSCCSCCEEEEEHHHHHH----------HTTTTTTSCCCEEEETTGGGCCT-------------------
T ss_pred HHHHHHHHhcCCCCCCcEEEeeHHHHHh----------hHHHhhcCCccEEEEECceecCC-------------------
Confidence 1246899999998853 22445567999999998887431
Q ss_pred hhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeee
Q psy11640 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGL 241 (552)
Q Consensus 162 d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgL 241 (552)
.....+ +.+..+.+.++++|
T Consensus 207 -----------------------------------------------------------~~~~~~-~al~~l~~~~rl~L 226 (644)
T 1z3i_X 207 -----------------------------------------------------------SDNQTY-LALNSMNAQRRVLI 226 (644)
T ss_dssp -----------------------------------------------------------TCHHHH-HHHHHHCCSEEEEE
T ss_pred -----------------------------------------------------------hhhHHH-HHHHhcccCcEEEE
Confidence 011222 24556788999999
Q ss_pred cceecccccc-hhhhhhhhccc----------------------------------------------ccccCHHHHHHc
Q psy11640 242 TATLLREDDK-IADLNFLIGPK----------------------------------------------LYEANWLELQKR 274 (552)
Q Consensus 242 TATp~r~d~~-~~~L~~lig~~----------------------------------------------~~~~~~~el~~~ 274 (552)
||||++++.. ...+..++.|. +......++ .
T Consensus 227 TgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v--~ 304 (644)
T 1z3i_X 227 SGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDIL--S 304 (644)
T ss_dssp CSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGG--G
T ss_pred ecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH--h
Confidence 9999998532 11111112221 111111111 2
Q ss_pred CCCcceEEEEEEcCCCHHHHHHHHhhhhhh--------------------hhhHHh------------------------
Q psy11640 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSK--------------------RLLLYV------------------------ 310 (552)
Q Consensus 275 g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~--------------------~~~~~~------------------------ 310 (552)
..+++.....++|++++.+...|....... .....+
T Consensus 305 ~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~ 384 (644)
T 1z3i_X 305 KYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLF 384 (644)
T ss_dssp GTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTS
T ss_pred hhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhc
Confidence 357777778899999998876664321100 000000
Q ss_pred -----------cCchhHHHHHHHHHHHh-hcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhcc
Q psy11640 311 -----------MNPNKYRATQYLIAYHE-RRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 311 -----------~~~~K~~~l~~Ll~~~~-~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~ 373 (552)
..+.|+.++..++.... ..++|+||||+++.+++.++..| .+..+||+++..+|++++++|++
T Consensus 385 ~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 464 (644)
T 1z3i_X 385 PQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNN 464 (644)
T ss_dssp CSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHS
T ss_pred cccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcC
Confidence 12468888888887764 36889999999999999999988 45679999999999999999996
Q ss_pred CCCe---eEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHH
Q psy11640 374 NPKV---NTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRK 450 (552)
Q Consensus 374 ~g~~---~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~ 450 (552)
++. .+|++|+++++|||+|+|++||+++ ++|||..+.|++||++|.||.+ +|+||+|++.+|+|+.+...
T Consensus 465 -~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d-~~wnp~~~~Qa~gR~~R~Gq~~-----~v~v~~lv~~~tiEe~i~~~ 537 (644)
T 1z3i_X 465 -PSSPEFIFMLSSKAGGCGLNLIGANRLVMFD-PDWNPANDEQAMARVWRDGQKK-----TCYIYRLLSTGTIEEKILQR 537 (644)
T ss_dssp -TTCCCCEEEEEGGGSCTTCCCTTEEEEEECS-CCSSHHHHHHHHTTSSSTTCCS-----CEEEEEEEETTSHHHHHHHH
T ss_pred -CCCCcEEEEEecccccCCcccccCCEEEEEC-CCCCccHHHHHHHhhhhcCCCC-----ceEEEEEEECCCHHHHHHHH
Confidence 544 3777889999999999999999999 6999999999999999999976 59999999999999999875
Q ss_pred HHH
Q psy11640 451 RQR 453 (552)
Q Consensus 451 r~~ 453 (552)
...
T Consensus 538 ~~~ 540 (644)
T 1z3i_X 538 QAH 540 (644)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2e-38 Score=344.90 Aligned_cols=340 Identities=15% Similarity=0.198 Sum_probs=249.5
Q ss_pred hccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC---CCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP---MGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~---~~~~Iv 100 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.++|.+|...+...+..++|+..... ...+|+
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~ 208 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV 208 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEE
Confidence 56899999999999999877654 34499999999999999999999997666667888877754321 468999
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
|+||+.+..... ..+ .+|++||+||+|+
T Consensus 209 i~T~~~l~~~~~---------~~~--~~~~liIiDE~H~----------------------------------------- 236 (510)
T 2oca_A 209 VGTWQTVVKQPK---------EWF--SQFGMMMNDECHL----------------------------------------- 236 (510)
T ss_dssp EEEHHHHTTSCG---------GGG--GGEEEEEEETGGG-----------------------------------------
T ss_pred EEeHHHHhhchh---------hhh--hcCCEEEEECCcC-----------------------------------------
Confidence 999998864311 122 5799999996554
Q ss_pred cCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhhhhhhh
Q psy11640 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLNFLI 259 (552)
Q Consensus 181 ~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~L~~li 259 (552)
.....+..++..+ ++..+|+|||||.+.......+..++
T Consensus 237 ----------------------------------------~~~~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~ 276 (510)
T 2oca_A 237 ----------------------------------------ATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMF 276 (510)
T ss_dssp ----------------------------------------CCHHHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHH
T ss_pred ----------------------------------------CCcccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhh
Confidence 3444555566665 56789999999976655556667789
Q ss_pred cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcC-CeEEEEec
Q psy11640 260 GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRG-DKTIVFSD 338 (552)
Q Consensus 260 g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g-~kvIVF~~ 338 (552)
|+..+.....++++.|++.++.+..+.+.+++..........-............+...+..++......+ .++|||+.
T Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~ 356 (510)
T 2oca_A 277 GEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH 356 (510)
T ss_dssp CSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99999999999999999999999988888876654111000001112223344566666666666544444 45666666
Q ss_pred cHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-CccccccCCCCCCEEEEeccCCCChhhHH
Q psy11640 339 NVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANVLIQISSHGGSRRQEA 412 (552)
Q Consensus 339 ~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~~GlDlp~a~~VI~~~~~~~s~~q~~ 412 (552)
+.+++.+++.| .+..+||+++..+|.++++.|++ |+++|||+| +++++|+|+|++++||+++ +++|+.++.
T Consensus 357 -~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~-g~~~vLv~T~~~~~~GiDip~v~~vi~~~-~~~s~~~~~ 433 (510)
T 2oca_A 357 -VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN-GKGIIIVASYGVFSTGISVKNLHHVVLAH-GVKSKIIVL 433 (510)
T ss_dssp -HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH-CCSCEEEEEHHHHHHSCCCCSEEEEEESS-CCCSCCHHH
T ss_pred -HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC-CCCCEEEEEcChhhcccccccCcEEEEeC-CCCCHHHHH
Confidence 88888899988 45789999999999999999996 899999999 9999999999999999999 689999999
Q ss_pred HHhhhccccCCCCCCCceeEEEEEEecCCch----------------hhHHHHHHHHHHHHcCCCeeEee
Q psy11640 413 QRLGRILRAKKGAIAEEYNAFFYTLVSQDTM----------------EMSYSRKRQRFLINQGYSYKVIT 466 (552)
Q Consensus 413 Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~----------------e~~~~~~r~~~l~~~g~~~~v~~ 466 (552)
||+||+||.++++. .+.+|++++..++ .......|.+.+.++++.+.+.+
T Consensus 434 Q~~GR~gR~g~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e~~~~~~~~ 499 (510)
T 2oca_A 434 QTIGRVLRKHGSKT----IATVWDLIDDAGVKPKSANTKKKYVHLNYLLKHGIDRIQRYADEKFNYVMKT 499 (510)
T ss_dssp HHHHHHHTTTCCCC----CCEEEEEEEECCBCCSSSSCSCSCSBCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHhcccccCCCCc----eEEEEEeecchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhcCceEEEee
Confidence 99999999998764 6999999986531 12334456666777777764443
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.1e-38 Score=334.81 Aligned_cols=327 Identities=17% Similarity=0.167 Sum_probs=224.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhc----CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCCCcE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMGCGI 99 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~~~I 99 (552)
..++.+|||+|||++++.++... ..++|||||+++|+.||.++|.+|++.+...+..++|+.... ....+|
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~i 104 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKV 104 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSE
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCCCE
Confidence 78899999999999999887653 789999999999999999999999977667899998876432 135789
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|+||+++...... ..+...+|++||+||||+....+.
T Consensus 105 vv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~---------------------------------- 142 (494)
T 1wp9_A 105 IVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYA---------------------------------- 142 (494)
T ss_dssp EEECHHHHHHHHHT--------TSCCTTSCSEEEEETGGGCSTTCH----------------------------------
T ss_pred EEecHHHHHHHHhc--------CCcchhhceEEEEECCcccCCCCc----------------------------------
Confidence 99999988542110 122346899999999887432000
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLI 259 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~li 259 (552)
.......+....+..++++|||||.++......+...+
T Consensus 143 ------------------------------------------~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 143 ------------------------------------------YVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNL 180 (494)
T ss_dssp ------------------------------------------HHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHT
T ss_pred ------------------------------------------HHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhc
Confidence 00011112223446789999999985433444444444
Q ss_pred ccccccc--CHHHHHHcCCCcceEEEEEEcCCCHHHHHH-----------------------------------------
Q psy11640 260 GPKLYEA--NWLELQKRGFIARVQCAEVWCPMSPEFYRE----------------------------------------- 296 (552)
Q Consensus 260 g~~~~~~--~~~el~~~g~l~~~~~~~v~~~l~~~~~~~----------------------------------------- 296 (552)
+...... ..... -..++.+.....+...+++.....
T Consensus 181 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 181 GIEHIEYRSENSPD-VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TCCEEEECCTTSTT-TGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred ChheeeccCCCcHH-HHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 3211100 00000 011222222222222333221100
Q ss_pred ----------------------------------------HHhhh-------------------hhhhh-------hHHh
Q psy11640 297 ----------------------------------------YLVCK-------------------TSKRL-------LLYV 310 (552)
Q Consensus 297 ----------------------------------------y~~~~-------------------~~~~~-------~~~~ 310 (552)
|+... ..... ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 00000 00000 0001
Q ss_pred cCchhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHc-----CCceEeC--------CCCHHHHHHHHHhhccCC
Q psy11640 311 MNPNKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKM-----NKPYIYG--------PTSQSERIQILQNFKLNP 375 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G--------~~~~~eR~~il~~F~~~g 375 (552)
..+.|+..+.+++..+. ..+.++||||+++..++.++..| .+..+|| +++..+|+++++.|++ |
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~ 418 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-G 418 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-T
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc-C
Confidence 45568888888887754 46889999999999999999988 3567999 9999999999999996 7
Q ss_pred CeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHH
Q psy11640 376 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRK 450 (552)
Q Consensus 376 ~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~ 450 (552)
+++|||+|+++++|||+|++++||+++ ++||+..++||+||+||.++ +.+|.|++.+|+|+.+...
T Consensus 419 ~~~vLv~T~~~~~Gldl~~~~~Vi~~d-~~~~~~~~~Qr~GR~~R~g~--------g~~~~l~~~~t~ee~~~~~ 484 (494)
T 1wp9_A 419 EFNVLVATSVGEEGLDVPEVDLVVFYE-PVPSAIRSIQRRGRTGRHMP--------GRVIILMAKGTRDEAYYWS 484 (494)
T ss_dssp SCSEEEECGGGGGGGGSTTCCEEEESS-CCHHHHHHHHHHTTSCSCCC--------SEEEEEEETTSHHHHHHHH
T ss_pred CceEEEECCccccCCCchhCCEEEEeC-CCCCHHHHHHHHhhccCCCC--------ceEEEEEecCCHHHHHHHH
Confidence 999999999999999999999999999 69999999999999999987 3479999999999988764
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1e-35 Score=344.89 Aligned_cols=328 Identities=13% Similarity=0.141 Sum_probs=229.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcc--------cC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK--------DK 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~--------~~ 93 (552)
..+.++.+|||+|||++|++++... .+++|||||+ .|+.||.++|.+|+++ .+.+++++.. ..
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l---~v~v~~~~~~~~~~~~~~~~ 245 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNL---RFALFDDERYAEAQHDAYNP 245 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCC---CCEECCHHHHHHHHHTTCSS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCC---CEEEEccchhhhhhhhcccc
Confidence 3467888899999999999888642 3489999999 8999999999988864 4566666541 12
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCC
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 173 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 173 (552)
....+|+|+||+++...... ...+....|++||+||||+.......
T Consensus 246 ~~~~dIvI~T~~~L~~~~~~-------~~~l~~~~~dlVIvDEAH~~kn~~~~--------------------------- 291 (968)
T 3dmq_A 246 FDTEQLVICSLDFARRSKQR-------LEHLCEAEWDLLVVDEAHHLVWSEDA--------------------------- 291 (968)
T ss_dssp STTCSEEEECHHHHHTSTTT-------THHHHTSCCCEEEECCSSCCCCBTTB---------------------------
T ss_pred cccCCEEEEcHHHHhhCHHH-------HHHhhhcCCCEEEehhhHhhcCCCCc---------------------------
Confidence 24579999999999653221 13344579999999999985321100
Q ss_pred CCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh--hccceeeecceecccccc
Q psy11640 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV--QSHCKLGLTATLLREDDK 251 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~--~~~~~lgLTATp~r~d~~ 251 (552)
....++ .+..+ .++++|+|||||.+++..
T Consensus 292 ------------------------------------------------~s~~~~-~l~~L~~~~~~~L~LTATPi~n~~~ 322 (968)
T 3dmq_A 292 ------------------------------------------------PSREYQ-AIEQLAEHVPGVLLLTATPEQLGME 322 (968)
T ss_dssp ------------------------------------------------CCHHHH-HHHHHHTTCSSEEESCSSCSSSCSS
T ss_pred ------------------------------------------------chHHHH-HHHHHhhcCCcEEEEEcCCccCCHH
Confidence 001122 23333 467799999999875322
Q ss_pred -hhhhhhhhcccccccC---------HH---H------------------------------------------------
Q psy11640 252 -IADLNFLIGPKLYEAN---------WL---E------------------------------------------------ 270 (552)
Q Consensus 252 -~~~L~~lig~~~~~~~---------~~---e------------------------------------------------ 270 (552)
...+..++.|..+... +. +
T Consensus 323 el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 402 (968)
T 3dmq_A 323 SHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQE 402 (968)
T ss_dssp CTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHH
T ss_pred HHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHH
Confidence 1112222333222110 00 0
Q ss_pred ----HHH------------c---CCCcceEEEEEEcCCCHHHHHHHHhhhhhh----------------h--------hh
Q psy11640 271 ----LQK------------R---GFIARVQCAEVWCPMSPEFYREYLVCKTSK----------------R--------LL 307 (552)
Q Consensus 271 ----l~~------------~---g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~----------------~--------~~ 307 (552)
+.. . .-++......+.+++++.....|....... . ..
T Consensus 403 ~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~ 482 (968)
T 3dmq_A 403 LVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNA 482 (968)
T ss_dssp HHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSC
T ss_pred HHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhh
Confidence 000 0 001111223345666665544443211000 0 00
Q ss_pred HHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc------CCceEeCCCCHHHHHHHHHhhccCCC--eeE
Q psy11640 308 LYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM------NKPYIYGPTSQSERIQILQNFKLNPK--VNT 379 (552)
Q Consensus 308 ~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L------~~~~i~G~~~~~eR~~il~~F~~~g~--~~v 379 (552)
.......|...+..++... .+.++||||+++.+++.++..| .+..+||++++.+|.++++.|++ ++ ++|
T Consensus 483 ~~~~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~-g~~~~~v 559 (968)
T 3dmq_A 483 TWWNFDPRVEWLMGYLTSH--RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAE-EDTGAQV 559 (968)
T ss_dssp CTTTTSHHHHHHHHHHHHT--SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHS-TTSSCEE
T ss_pred cccCccHHHHHHHHHHHhC--CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC-CCCcccE
Confidence 1233456888888888874 7899999999999999999888 24679999999999999999996 66 999
Q ss_pred EEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHH
Q psy11640 380 IFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRK 450 (552)
Q Consensus 380 Lv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~ 450 (552)
||+|+++++|+|+|.+++||+++ ++||+.+|.||+||++|.|+.+ .|++|.++..+|+++.+.+.
T Consensus 560 LvaT~v~~~GlDl~~~~~VI~~d-~p~~~~~~~Q~~GR~~R~Gq~~-----~v~v~~~~~~~t~ee~i~~~ 624 (968)
T 3dmq_A 560 LLCSEIGSEGRNFQFASHMVMFD-LPFNPDLLEQRIGRLDRIGQAH-----DIQIHVPYLEKTAQSVLVRW 624 (968)
T ss_dssp EECSCCTTCSSCCTTCCEEECSS-CCSSHHHHHHHHHTTSCSSSCS-----CCEEEEEEETTSHHHHHHHH
T ss_pred EEecchhhcCCCcccCcEEEEec-CCCCHHHHHHHhhccccCCCCc-----eEEEEEecCCChHHHHHHHH
Confidence 99999999999999999999999 6999999999999999999865 59999999999999988764
No 8
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.7e-35 Score=326.00 Aligned_cols=335 Identities=17% Similarity=0.194 Sum_probs=217.3
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHh------------cCCcEEEEecCchhHHHHH-HHHH
Q psy11640 7 ISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCT------------VRKRALVLCNSGVSVEQWK-HQFK 73 (552)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~------------~~~~~LIl~Pt~~Lv~Qw~-~e~~ 73 (552)
.+..|.+....-...- .+.+++.++++|||+|||++++.++.. ...++|||||+++|+.||. ++|+
T Consensus 179 lr~~Q~~ai~~~~~~~-~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSV-LQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp CCHHHHHHHHHHHHHH-HTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred chHHHHHHHHHHHHHH-hcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4455555554432211 113456799999999999999887753 3478999999999999999 8888
Q ss_pred hhhCCCCCcEEEEecCcccCCCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCC
Q psy11640 74 LWSTADDSMICRFTSEAKDKPMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAV 153 (552)
Q Consensus 74 ~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~ 153 (552)
.|.. .+..+.+... ....+|+|+||+.|....... .....+....|++||+||||+....
T Consensus 258 ~~~~----~~~~~~~~~~--~~~~~I~v~T~~~l~~~~~~~----~~~~~~~~~~~~lvIiDEaH~~~~~---------- 317 (590)
T 3h1t_A 258 PFGD----ARHKIEGGKV--VKSREIYFAIYQSIASDERRP----GLYKEFPQDFFDLIIIDECHRGSAR---------- 317 (590)
T ss_dssp TTCS----SEEECCC--C--CSSCSEEEEEGGGC------C----CGGGGSCTTSCSEEEESCCC---------------
T ss_pred hcch----hhhhhhccCC--CCCCcEEEEEhhhhccccccc----cccccCCCCccCEEEEECCcccccc----------
Confidence 7752 3455544332 246799999999986532110 0122343467999999988874320
Q ss_pred CcccccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh
Q psy11640 154 PEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV 233 (552)
Q Consensus 154 ~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~ 233 (552)
....++.++..+
T Consensus 318 --------------------------------------------------------------------~~~~~~~il~~~ 329 (590)
T 3h1t_A 318 --------------------------------------------------------------------DNSNWREILEYF 329 (590)
T ss_dssp ------------------------------------------------------------------------CHHHHHHS
T ss_pred --------------------------------------------------------------------chHHHHHHHHhC
Confidence 013345577778
Q ss_pred hccceeeecceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHH-------HHhh---h--
Q psy11640 234 QSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYRE-------YLVC---K-- 301 (552)
Q Consensus 234 ~~~~~lgLTATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~-------y~~~---~-- 301 (552)
+...+|+|||||.+.+. ..+..++|+.++.++..++++.|++.++.+..+........... +... .
T Consensus 330 ~~~~~l~lTATP~~~~~--~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (590)
T 3h1t_A 330 EPAFQIGMTATPLREDN--RDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEY 407 (590)
T ss_dssp TTSEEEEEESSCSCTTT--HHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------------
T ss_pred CcceEEEeccccccccc--hhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccC
Confidence 77889999999997654 34567789999999999999999999998887766543211110 0000 0
Q ss_pred hhhhhhHHhcCchhHHHHHH-H---HHHHhhcCCeEEEEeccHHHHHHHHHHcC-------------CceEeCCCCHHHH
Q psy11640 302 TSKRLLLYVMNPNKYRATQY-L---IAYHERRGDKTIVFSDNVFALKHYAVKMN-------------KPYIYGPTSQSER 364 (552)
Q Consensus 302 ~~~~~~~~~~~~~K~~~l~~-L---l~~~~~~g~kvIVF~~~~~~~~~l~~~L~-------------~~~i~G~~~~~eR 364 (552)
...........+.+...+.. + +... ..+.|+||||+++.+++.++..|. +..+||+++. +|
T Consensus 408 ~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r 485 (590)
T 3h1t_A 408 QTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IG 485 (590)
T ss_dssp -CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HH
T ss_pred CHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HH
Confidence 00000000111223333222 2 2222 356899999999999999998881 3468898764 79
Q ss_pred HHHHHhhccCCCee---EEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCC--CCCCCceeEEEEEEec
Q psy11640 365 IQILQNFKLNPKVN---TIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK--GAIAEEYNAFFYTLVS 439 (552)
Q Consensus 365 ~~il~~F~~~g~~~---vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~--~k~~~~~~v~vy~lvs 439 (552)
.+++++|++ ++.+ +|++|+++++|||+|.+++||+++ +++|+..|+||+||++|.++ ++. .++||+++.
T Consensus 486 ~~~l~~F~~-~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~-~~~s~~~~~Q~iGR~~R~~~~~~k~----~~~I~D~~g 559 (590)
T 3h1t_A 486 KGHLSRFQE-LETSTPVILTTSQLLTTGVDAPTCKNVVLAR-VVNSMSEFKQIVGRGTRLREDYGKL----WFNIIDYTG 559 (590)
T ss_dssp HHHHHHHHC-TTCCCCCEEEESSTTTTTCCCTTEEEEEEES-CCCCHHHHHHHHTTSCCCBGGGTBS----CEEEEECSS
T ss_pred HHHHHHHhC-CCCCCCEEEEECChhhcCccchheeEEEEEe-cCCChHHHHHHHhhhcccCccCCCC----EEEEEecCC
Confidence 999999996 5644 677789999999999999999999 69999999999999999987 554 689999984
Q ss_pred C
Q psy11640 440 Q 440 (552)
Q Consensus 440 ~ 440 (552)
.
T Consensus 560 ~ 560 (590)
T 3h1t_A 560 S 560 (590)
T ss_dssp S
T ss_pred c
Confidence 4
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.6e-35 Score=319.56 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHcC-----------------CceEeCCCCHHHHHHHHHhhcc
Q psy11640 313 PNKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKMN-----------------KPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L~-----------------~~~i~G~~~~~eR~~il~~F~~ 373 (552)
..|+..+.+++.... ..+.++||||+++.+++.++..|. ...+||++++.+|.+++++|++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 568888888886543 345899999999999999999871 2345679999999999999995
Q ss_pred CCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHH
Q psy11640 374 NPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449 (552)
Q Consensus 374 ~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~ 449 (552)
+|+++|||+|+++++|||+|++++||+++ +|||+..|+||+|| ||... +.+|.|++.++.++....
T Consensus 450 ~g~~~vLvaT~~~~~GlDlp~v~~VI~~d-~p~s~~~~~Qr~GR-gR~~~--------g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 450 SGDNNILIATSVADEGIDIAECNLVILYE-YVGNVIKMIQTRGR-GRARD--------SKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp --CCSEEEECCCTTCCEETTSCSEEEEES-CCSSCCCEECSSCC-CTTTS--------CEEEEEESCHHHHHHHHH
T ss_pred CCCeeEEEEcchhhcCCccccCCEEEEeC-CCCCHHHHHHhcCc-CcCCC--------ceEEEEEcCCCHHHHHHH
Confidence 48999999999999999999999999999 69999999999999 88733 568889999888776443
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.4e-35 Score=318.25 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=70.5
Q ss_pred chhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHcC-----------------CceEeCCCCHHHHHHHHHhhcc
Q psy11640 313 PNKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKMN-----------------KPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L~-----------------~~~i~G~~~~~eR~~il~~F~~ 373 (552)
..|+..|..++..+. ..+.++||||+++.+++.++..|. ...+||++++.+|.+++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 568888888886543 567899999999999999999882 1245778999999999999996
Q ss_pred CCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHH
Q psy11640 374 NPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS 448 (552)
Q Consensus 374 ~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~ 448 (552)
+|+++|||+|+++++|||+|+|++||+++ +|||+.+|+||+|| ||.++ +.+|.|++.++.++.+.
T Consensus 451 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d-~p~s~~~~~Qr~GR-gR~~~--------g~~~~l~~~~~~~~~~~ 515 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDIVQCNLVVLYE-YSGNVTKMIQVRGR-GRAAG--------SKCILVTSKTEVVENEK 515 (556)
T ss_dssp ---CCEEEEEC-----------CEEEEET-CCSCHHHHHHC-----------------CCEEEEESCHHHHHHHH
T ss_pred cCceEEEEEcCchhcCCCchhCCEEEEeC-CCCCHHHHHHhcCC-CCCCC--------ceEEEEEeCcchHHHHH
Confidence 48999999999999999999999999999 69999999999999 89854 44788899998877654
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.3e-34 Score=325.36 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=75.9
Q ss_pred chhHHHHHHHHHHH--hhcCCeEEEEeccHHHHHHHHHHc-----------------CCceEeCCCCHHHHHHHHHhhcc
Q psy11640 313 PNKYRATQYLIAYH--ERRGDKTIVFSDNVFALKHYAVKM-----------------NKPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~--~~~g~kvIVF~~~~~~~~~l~~~L-----------------~~~~i~G~~~~~eR~~il~~F~~ 373 (552)
+.|+..|..+|..+ ...+.++||||+++.+++.|+..| +...+||++++.+|.+++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 56888888888653 256789999999999999999988 22456888999999999999996
Q ss_pred CCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHH
Q psy11640 374 NPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449 (552)
Q Consensus 374 ~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~ 449 (552)
+|+++|||+|+++++|||+|+|++||+|+ +|||+.+|+||+|| ||..+ +.+|.|++.+++++.+..
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI~yd-~p~s~~~~iQr~GR-GR~~~--------g~~i~l~~~~~~ee~~~~ 757 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYE-YSGNVTKMIQVRGR-GRAAG--------SKCILVTSKTEVVENEKC 757 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEEEES-CCSCHHHHHTC--------C--------CCEEEEECCHHHHHHHHH
T ss_pred cCCceEEEEcCchhcCCCchhCCEEEEeC-CCCCHHHHHHhcCC-CCCCC--------ceEEEEEeCCcHHHHHHH
Confidence 48999999999999999999999999999 59999999999999 99854 447888999988876543
No 12
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.4e-33 Score=321.64 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=76.5
Q ss_pred chhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHcC-----------------CceEeCCCCHHHHHHHHHhhcc
Q psy11640 313 PNKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKMN-----------------KPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L~-----------------~~~i~G~~~~~eR~~il~~F~~ 373 (552)
..|+..|..+|..+. ..+.++||||+++.+++.|+..|. ...+||+|++.+|.+++++|+.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 568888888887643 457899999999999999999882 2346888999999999999995
Q ss_pred CCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHH
Q psy11640 374 NPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYS 448 (552)
Q Consensus 374 ~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~ 448 (552)
+|+++|||+|+++++|||+|+|++||+|+ ++||+.+|+||+|| ||..+ +.+|.|++.+|.++.+.
T Consensus 692 ~g~~~VLVaT~~~~eGIDlp~v~~VI~yD-~p~s~~~~iQr~GR-GR~~~--------g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYE-YSGNVTKMIQVRGR-GRAAG--------SKCILVTSKTEVVENEK 756 (936)
T ss_dssp --CCSEEEEECC------CCCCSEEEEES-CCSCSHHHHCC--------C--------CCEEEEESCHHHHHHHH
T ss_pred cCCeeEEEEeCchhcCCcchhCCEEEEeC-CCCCHHHHHHhcCC-CCCCC--------CEEEEEEeCCCHHHHHH
Confidence 48999999999999999999999999999 69999999999999 89855 34688899999887654
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=312.01 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHhh--c-CCeEEEEeccHHHHHHHHHHc-----------CCceEeCC--------CCHHHHHHHHHhh
Q psy11640 314 NKYRATQYLIAYHER--R-GDKTIVFSDNVFALKHYAVKM-----------NKPYIYGP--------TSQSERIQILQNF 371 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~--~-g~kvIVF~~~~~~~~~l~~~L-----------~~~~i~G~--------~~~~eR~~il~~F 371 (552)
.|+..|..+|..+.. . +.++||||+++.+++.|+..| .+..+||+ +++.+|.++++.|
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 344445555544322 2 789999999999999999976 34578999 9999999999999
Q ss_pred ccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccC
Q psy11640 372 KLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422 (552)
Q Consensus 372 ~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~ 422 (552)
++ |+++|||+|+++++|||+|++++||+++ +|+|+..|+||+||++|.+
T Consensus 461 ~~-g~~~VLVaT~~~~~GIDip~v~~VI~~d-~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 461 RT-GKINLLIATTVAEEGLDIKECNIVIRYG-LVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CC----CCSEEECSCCTTSCCCSCCCCEEES-CCCCHHHHHHHHTTSCSSS
T ss_pred hc-CCCcEEEEccccccCCccccCCEEEEeC-CCCCHHHHHHHcCCCCCCC
Confidence 96 8999999999999999999999999999 6999999999999976644
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.6e-32 Score=287.25 Aligned_cols=291 Identities=16% Similarity=0.115 Sum_probs=199.8
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC-------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK------- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~------- 93 (552)
+..++++|||+|||++++.++... +.++|||||+++|+.||.+++.+|... +...+..+.|+....
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 125 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 125 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh
Confidence 457888999999999988776643 458999999999999999999998754 256788888765321
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCC
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDH 173 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~ 173 (552)
....+|+|+||+.+...... ..+....+++||+||||+.....
T Consensus 126 ~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~vViDEaH~~~~~~----------------------------- 168 (391)
T 1xti_A 126 KNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQL----------------------------- 168 (391)
T ss_dssp HSCCSEEEECHHHHHHHHHT--------TSSCCTTCSEEEECSHHHHTSSH-----------------------------
T ss_pred cCCCCEEEECHHHHHHHHHc--------CCccccccCEEEEeCHHHHhhcc-----------------------------
Confidence 12368999999988532111 11223679999999887632100
Q ss_pred CCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccch
Q psy11640 174 KSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKI 252 (552)
Q Consensus 174 ~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~ 252 (552)
.....+..++...+ ....+++||||.... .
T Consensus 169 -----------------------------------------------~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~ 199 (391)
T 1xti_A 169 -----------------------------------------------DMRRDVQEIFRMTPHEKQVMMFSATLSKEI--R 199 (391)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTSCSSSEEEEEESSCCSTH--H
T ss_pred -----------------------------------------------chHHHHHHHHhhCCCCceEEEEEeeCCHHH--H
Confidence 00011222333332 456899999986431 1
Q ss_pred hhhhhhhc-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCC
Q psy11640 253 ADLNFLIG-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGD 331 (552)
Q Consensus 253 ~~L~~lig-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~ 331 (552)
..+..+++ |......... .-....... .........|...+..++... .+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~l~~~--~~~ 251 (391)
T 1xti_A 200 PVCRKFMQDPMEIFVDDET---KLTLHGLQQ-----------------------YYVKLKDNEKNRKLFDLLDVL--EFN 251 (391)
T ss_dssp HHHHHHCSSCEEEECCCCC---CCCCTTCEE-----------------------EEEECCGGGHHHHHHHHHHHS--CCS
T ss_pred HHHHHHcCCCeEEEecCcc---ccCcccceE-----------------------EEEEcCchhHHHHHHHHHHhc--CCC
Confidence 11111111 1110000000 000000000 001112235666777777765 778
Q ss_pred eEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCC
Q psy11640 332 KTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG 406 (552)
Q Consensus 332 kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~ 406 (552)
++||||+++..++.++..| .+..+||++++.+|.++++.|++ ++.+|||+|+++++|+|+|++++||+++ .++
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gidi~~~~~Vi~~~-~p~ 329 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRILVATNLFGRGMDIERVNIAFNYD-MPE 329 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TCCSEEEESCCCSSCBCCTTEEEEEESS-CCS
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc-CCCcEEEECChhhcCCCcccCCEEEEeC-CCC
Confidence 9999999999999999988 35679999999999999999995 8999999999999999999999999999 699
Q ss_pred ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 407 SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 407 s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
|+..|+||+||+||.|+. ..++.+++..
T Consensus 330 s~~~~~Qr~GR~~R~g~~-------g~~~~~~~~~ 357 (391)
T 1xti_A 330 DSDTYLHRVARAGRFGTK-------GLAITFVSDE 357 (391)
T ss_dssp SHHHHHHHHCBCSSSCCC-------CEEEEEECSH
T ss_pred CHHHHHHhcccccCCCCc-------eEEEEEEccc
Confidence 999999999999998863 3456666654
No 15
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.2e-32 Score=283.79 Aligned_cols=291 Identities=13% Similarity=0.153 Sum_probs=198.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC--CCCCcE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--PMGCGI 99 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~--~~~~~I 99 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.++.......+....++.... ....+|
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 124 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQV 124 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCE
Confidence 56788899999999998877653 2468999999999999999999998866556677777665332 246899
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|+|++.+.....+ ..+...++++||+||||+......
T Consensus 125 iv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~~---------------------------------- 162 (395)
T 3pey_A 125 IVGTPGTVLDLMRR--------KLMQLQKIKIFVLDEADNMLDQQG---------------------------------- 162 (395)
T ss_dssp EEECHHHHHHHHHT--------TCBCCTTCCEEEEETHHHHHHSTT----------------------------------
T ss_pred EEEcHHHHHHHHHc--------CCcccccCCEEEEEChhhhcCccc----------------------------------
Confidence 99999987532111 112236799999998876321000
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFL 258 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~l 258 (552)
....+..+...++ ....+++||||...- ......+
T Consensus 163 ------------------------------------------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~~~ 198 (395)
T 3pey_A 163 ------------------------------------------LGDQCIRVKRFLPKDTQLVLFSATFADAV--RQYAKKI 198 (395)
T ss_dssp ------------------------------------------HHHHHHHHHHTSCTTCEEEEEESCCCHHH--HHHHHHH
T ss_pred ------------------------------------------cHHHHHHHHHhCCCCcEEEEEEecCCHHH--HHHHHHh
Confidence 0011122333332 356899999985321 1111111
Q ss_pred hc-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEe
Q psy11640 259 IG-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFS 337 (552)
Q Consensus 259 ig-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~ 337 (552)
++ +......... ...... ...+.... ....|...+..++... .+.++||||
T Consensus 199 ~~~~~~~~~~~~~----~~~~~~--~~~~~~~~--------------------~~~~~~~~l~~~~~~~--~~~~~lvf~ 250 (395)
T 3pey_A 199 VPNANTLELQTNE----VNVDAI--KQLYMDCK--------------------NEADKFDVLTELYGLM--TIGSSIIFV 250 (395)
T ss_dssp SCSCEEECCCGGG----CSCTTE--EEEEEECS--------------------SHHHHHHHHHHHHTTT--TSSEEEEEC
T ss_pred CCCCeEEEccccc----cccccc--cEEEEEcC--------------------chHHHHHHHHHHHHhc--cCCCEEEEe
Confidence 11 1111110000 000011 11111110 1123455555565544 678999999
Q ss_pred ccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCC------
Q psy11640 338 DNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG------ 406 (552)
Q Consensus 338 ~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~------ 406 (552)
+++..++.++..| .+..+||++++.+|.++++.|++ |+++|||+|+++++|+|+|++++||+++ .|+
T Consensus 251 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~~~~Vi~~~-~p~~~~~~~ 328 (395)
T 3pey_A 251 ATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE-GRSKVLITTNVLARGIDIPTVSMVVNYD-LPTLANGQA 328 (395)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCCEEEECGGGSSSCCCTTEEEEEESS-CCBCTTSSB
T ss_pred CCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC-CCCCEEEECChhhcCCCcccCCEEEEcC-CCCCCcCCC
Confidence 9999999999988 57789999999999999999996 8999999999999999999999999999 577
Q ss_pred ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 407 SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 407 s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
|+..|+||+||+||.|+. ..+|.+++.+
T Consensus 329 s~~~~~Qr~GR~gR~g~~-------g~~~~~~~~~ 356 (395)
T 3pey_A 329 DPATYIHRIGRTGRFGRK-------GVAISFVHDK 356 (395)
T ss_dssp CHHHHHHHHTTSSCTTCC-------EEEEEEECSH
T ss_pred CHHHhhHhccccccCCCC-------ceEEEEEech
Confidence 999999999999998763 4566667653
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-32 Score=291.21 Aligned_cols=307 Identities=17% Similarity=0.213 Sum_probs=203.3
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc-----------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC--
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV-----------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-- 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~-----------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-- 93 (552)
.+..++++|||+|||++++.++... +.++||||||++|+.||.+++.+|.......+..++|+....
T Consensus 93 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 172 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ 172 (434)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHH
Confidence 3567888999999999887655421 347999999999999999999999865455677777665321
Q ss_pred ----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhc
Q psy11640 94 ----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVL 169 (552)
Q Consensus 94 ----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l 169 (552)
..+++|+|+|++.|.....+ ..+....++++|+||||+.... .|
T Consensus 173 ~~~l~~~~~Ivv~Tp~~l~~~l~~--------~~~~l~~~~~lVlDEah~~~~~-------------gf----------- 220 (434)
T 2db3_A 173 NECITRGCHVVIATPGRLLDFVDR--------TFITFEDTRFVVLDEADRMLDM-------------GF----------- 220 (434)
T ss_dssp HHHHTTCCSEEEECHHHHHHHHHT--------TSCCCTTCCEEEEETHHHHTST-------------TT-----------
T ss_pred HHHhhcCCCEEEEChHHHHHHHHh--------CCcccccCCeEEEccHhhhhcc-------------Cc-----------
Confidence 24689999999987432111 0122367899999998874210 00
Q ss_pred CCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh---hccceeeecceec
Q psy11640 170 KPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV---QSHCKLGLTATLL 246 (552)
Q Consensus 170 ~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~---~~~~~lgLTATp~ 246 (552)
...++.++..+ +....+++|||+.
T Consensus 221 -----------------------------------------------------~~~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 221 -----------------------------------------------------SEDMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp -----------------------------------------------------HHHHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred -----------------------------------------------------HHHHHHHHHhcCCCCCceEEEEeccCC
Confidence 11223344332 3456899999985
Q ss_pred ccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHH
Q psy11640 247 REDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYH 326 (552)
Q Consensus 247 r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~ 326 (552)
.. ...+. ..++..+....+...-. ...........+....|...+.+++...
T Consensus 248 ~~---~~~~~-----------------~~~l~~~~~i~~~~~~~--------~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 299 (434)
T 2db3_A 248 EE---IQRMA-----------------GEFLKNYVFVAIGIVGG--------ACSDVKQTIYEVNKYAKRSKLIEILSEQ 299 (434)
T ss_dssp HH---HHHHH-----------------HTTCSSCEEEEESSTTC--------CCTTEEEEEEECCGGGHHHHHHHHHHHC
T ss_pred HH---HHHHH-----------------HHhccCCEEEEeccccc--------cccccceEEEEeCcHHHHHHHHHHHHhC
Confidence 32 11111 11111111111100000 0000000011112234556666666543
Q ss_pred hhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEe
Q psy11640 327 ERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQI 401 (552)
Q Consensus 327 ~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~ 401 (552)
+.++||||+++..++.++..| .+..+||++++.+|.++++.|++ |+++|||+|+++++|||+|++++||++
T Consensus 300 ---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLvaT~v~~rGlDi~~v~~VI~~ 375 (434)
T 2db3_A 300 ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN-GSMKVLIATSVASRGLDIKNIKHVINY 375 (434)
T ss_dssp ---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT-SSCSEEEECGGGTSSCCCTTCCEEEES
T ss_pred ---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc-CCCcEEEEchhhhCCCCcccCCEEEEE
Confidence 445999999999999999988 46789999999999999999995 899999999999999999999999999
Q ss_pred ccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcC
Q psy11640 402 SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQG 459 (552)
Q Consensus 402 ~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g 459 (552)
+ .|++...|+||+||+||.|+. ..++.|++.+. +..+...-.+.|...+
T Consensus 376 d-~p~~~~~y~qriGR~gR~g~~-------G~a~~~~~~~~-~~~~~~~l~~~l~~~~ 424 (434)
T 2db3_A 376 D-MPSKIDDYVHRIGRTGRVGNN-------GRATSFFDPEK-DRAIAADLVKILEGSG 424 (434)
T ss_dssp S-CCSSHHHHHHHHTTSSCTTCC-------EEEEEEECTTT-CGGGHHHHHHHHHHTT
T ss_pred C-CCCCHHHHHHHhcccccCCCC-------CEEEEEEeccc-cHHHHHHHHHHHHHcC
Confidence 9 699999999999999999873 45677777432 2223333334454443
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-32 Score=282.11 Aligned_cols=286 Identities=17% Similarity=0.168 Sum_probs=198.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~~ 97 (552)
+..++.+|||+|||++++.++... +.++|||||+++|+.||.+++.++++.....+..+.|+.... ....
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 124 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA 124 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCC
Confidence 467788999999999988776542 568999999999999999999999876556777777765321 1357
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+|+|+||+.+...... ..+...+++++|+||+|......
T Consensus 125 ~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~--------------------------------- 163 (367)
T 1hv8_A 125 NIVVGTPGRILDHINR--------GTLNLKNVKYFILDEADEMLNMG--------------------------------- 163 (367)
T ss_dssp SEEEECHHHHHHHHHT--------TCSCTTSCCEEEEETHHHHHTTT---------------------------------
T ss_pred CEEEecHHHHHHHHHc--------CCcccccCCEEEEeCchHhhhhc---------------------------------
Confidence 8999999987532111 01223678999999887632100
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLN 256 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~L~ 256 (552)
....+..++..+ +....+++||||.+.. ...+.
T Consensus 164 --------------------------------------------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~ 197 (367)
T 1hv8_A 164 --------------------------------------------FIKDVEKILNACNKDKRILLFSATMPREI--LNLAK 197 (367)
T ss_dssp --------------------------------------------THHHHHHHHHTSCSSCEEEEECSSCCHHH--HHHHH
T ss_pred --------------------------------------------hHHHHHHHHHhCCCCceEEEEeeccCHHH--HHHHH
Confidence 001112233333 3456799999996431 11222
Q ss_pred hhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEE
Q psy11640 257 FLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336 (552)
Q Consensus 257 ~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF 336 (552)
.+++...+.. ......... .+. ......|+..+..++. ..+.++|||
T Consensus 198 ~~~~~~~~~~-------~~~~~~~~~--~~~---------------------~~~~~~~~~~l~~~l~---~~~~~~lvf 244 (367)
T 1hv8_A 198 KYMGDYSFIK-------AKINANIEQ--SYV---------------------EVNENERFEALCRLLK---NKEFYGLVF 244 (367)
T ss_dssp HHCCSEEEEE-------CCSSSSSEE--EEE---------------------ECCGGGHHHHHHHHHC---STTCCEEEE
T ss_pred HHcCCCeEEE-------ecCCCCceE--EEE---------------------EeChHHHHHHHHHHHh---cCCCcEEEE
Confidence 2222211100 000000000 000 1112345555555544 467899999
Q ss_pred eccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhH
Q psy11640 337 SDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQE 411 (552)
Q Consensus 337 ~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~ 411 (552)
|+++..++.++..| ++..+||+++..+|.++++.|++ ++.+|||+|+++++|+|+|++++||+++ +++|+..|
T Consensus 245 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gid~~~~~~Vi~~~-~~~s~~~~ 322 (367)
T 1hv8_A 245 CKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-KKIRILIATDVMSRGIDVNDLNCVINYH-LPQNPESY 322 (367)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT-TSSSEEEECTTHHHHCCCSCCSEEEESS-CCSCHHHH
T ss_pred ECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc-CCCeEEEECChhhcCCCcccCCEEEEec-CCCCHHHh
Confidence 99999999999988 46789999999999999999995 8999999999999999999999999999 69999999
Q ss_pred HHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 412 AQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 412 ~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
.||+||++|.|+. ..+|.+++...
T Consensus 323 ~Q~~GR~~R~g~~-------g~~~~~~~~~~ 346 (367)
T 1hv8_A 323 MHRIGRTGRAGKK-------GKAISIINRRE 346 (367)
T ss_dssp HHHSTTTCCSSSC-------CEEEEEECTTS
T ss_pred hhcccccccCCCc-------cEEEEEEcHHH
Confidence 9999999998863 33566666643
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.2e-32 Score=287.38 Aligned_cols=290 Identities=16% Similarity=0.189 Sum_probs=199.6
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------CC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------PM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~~ 95 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.+++......+..+.|+.... ..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 138 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 138 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTS
T ss_pred CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcC
Confidence 45788999999999998877653 2458999999999999999999998865456777777765321 24
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|++.+.....+ ..+...++++||+||+|+.... +
T Consensus 139 ~~~Ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~------------------~------------- 179 (400)
T 1s2m_A 139 TVHILVGTPGRVLDLASR--------KVADLSDCSLFIMDEADKMLSR------------------D------------- 179 (400)
T ss_dssp CCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEESHHHHSSH------------------H-------------
T ss_pred CCCEEEEchHHHHHHHHh--------CCcccccCCEEEEeCchHhhhh------------------c-------------
Confidence 579999999987432111 1122367899999987752110 0
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~ 254 (552)
....+..++..++ ....+++|||+... ....
T Consensus 180 ----------------------------------------------~~~~~~~i~~~~~~~~~~i~lSAT~~~~--~~~~ 211 (400)
T 1s2m_A 180 ----------------------------------------------FKTIIEQILSFLPPTHQSLLFSATFPLT--VKEF 211 (400)
T ss_dssp ----------------------------------------------HHHHHHHHHTTSCSSCEEEEEESCCCHH--HHHH
T ss_pred ----------------------------------------------hHHHHHHHHHhCCcCceEEEEEecCCHH--HHHH
Confidence 0011122333232 45679999998532 1111
Q ss_pred hhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEE
Q psy11640 255 LNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334 (552)
Q Consensus 255 L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvI 334 (552)
+...++... ..... ..-...... ..+ .......|...+..++... .+.++|
T Consensus 212 ~~~~~~~~~-~~~~~---~~~~~~~~~--~~~---------------------~~~~~~~k~~~l~~~~~~~--~~~~~l 262 (400)
T 1s2m_A 212 MVKHLHKPY-EINLM---EELTLKGIT--QYY---------------------AFVEERQKLHCLNTLFSKL--QINQAI 262 (400)
T ss_dssp HHHHCSSCE-EESCC---SSCBCTTEE--EEE---------------------EECCGGGHHHHHHHHHHHS--CCSEEE
T ss_pred HHHHcCCCe-EEEec---cccccCCce--eEE---------------------EEechhhHHHHHHHHHhhc--CCCcEE
Confidence 111111100 00000 000000000 000 0112235666777777765 678999
Q ss_pred EEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChh
Q psy11640 335 VFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRR 409 (552)
Q Consensus 335 VF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~ 409 (552)
|||+++..++.++..| ++..+||+++..+|..+++.|++ ++++|||+|+++++|+|+|++++||+++ +++|+.
T Consensus 263 Vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~~~~Vi~~~-~p~s~~ 340 (400)
T 1s2m_A 263 IFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ-GKVRTLVCSDLLTRGIDIQAVNVVINFD-FPKTAE 340 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT-TSSSEEEESSCSSSSCCCTTEEEEEESS-CCSSHH
T ss_pred EEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccCCCccCCCEEEEeC-CCCCHH
Confidence 9999999999999988 46789999999999999999995 8999999999999999999999999999 699999
Q ss_pred hHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 410 QEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 410 q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
.|+||+||+||.|+. ..+|.|++.+.
T Consensus 341 ~~~Qr~GR~gR~g~~-------g~~~~l~~~~~ 366 (400)
T 1s2m_A 341 TYLHRIGRSGRFGHL-------GLAINLINWND 366 (400)
T ss_dssp HHHHHHCBSSCTTCC-------EEEEEEECGGG
T ss_pred HHHHhcchhcCCCCC-------ceEEEEeccch
Confidence 999999999998763 55777777653
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4e-32 Score=286.54 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=200.8
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------CC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------PM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~~ 95 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.+|.......+..+.|+.... ..
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 154 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 154 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc
Confidence 45788899999999998877663 2468999999999999999999998865556677777765321 13
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|++.+.....+ ..+....+++||+||+|+.....
T Consensus 155 ~~~ivv~Tp~~l~~~l~~--------~~~~~~~~~~vViDEah~~~~~~------------------------------- 195 (410)
T 2j0s_A 155 GQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKG------------------------------- 195 (410)
T ss_dssp CCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHTSTT-------------------------------
T ss_pred CCCEEEcCHHHHHHHHHh--------CCccHhheeEEEEccHHHHHhhh-------------------------------
Confidence 578999999977432110 11223578999999887632100
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~ 254 (552)
....+..++..+ +....+++||||... ....
T Consensus 196 ----------------------------------------------~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~ 227 (410)
T 2j0s_A 196 ----------------------------------------------FKEQIYDVYRYLPPATQVVLISATLPHE--ILEM 227 (410)
T ss_dssp ----------------------------------------------THHHHHHHHTTSCTTCEEEEEESCCCHH--HHTT
T ss_pred ----------------------------------------------hHHHHHHHHHhCccCceEEEEEcCCCHH--HHHH
Confidence 001112233333 245689999998532 1111
Q ss_pred hhhhhc-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeE
Q psy11640 255 LNFLIG-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKT 333 (552)
Q Consensus 255 L~~lig-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kv 333 (552)
+..+++ |.......... .........+.+ .....|...+..++... ...++
T Consensus 228 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------------------~~~~~k~~~l~~~~~~~--~~~~~ 279 (410)
T 2j0s_A 228 TNKFMTDPIRILVKRDEL----TLEGIKQFFVAV----------------------EREEWKFDTLCDLYDTL--TITQA 279 (410)
T ss_dssp GGGTCSSCEEECCCGGGC----SCTTEEEEEEEE----------------------SSTTHHHHHHHHHHHHH--TSSEE
T ss_pred HHHHcCCCEEEEecCccc----cCCCceEEEEEe----------------------CcHHhHHHHHHHHHHhc--CCCcE
Confidence 111111 11111000000 000111000111 11123666777777765 56799
Q ss_pred EEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCCh
Q psy11640 334 IVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSR 408 (552)
Q Consensus 334 IVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~ 408 (552)
||||+++..++.++..| ++..+||++++.+|..+++.|++ |+++|||+|+++++|+|+|++++||+++ +++|+
T Consensus 280 lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~v~~Vi~~~-~p~s~ 357 (410)
T 2j0s_A 280 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS-GASRVLISTDVWARGLDVPQVSLIINYD-LPNNR 357 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH-TSSCEEEECGGGSSSCCCTTEEEEEESS-CCSSH
T ss_pred EEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC-CCCCEEEECChhhCcCCcccCCEEEEEC-CCCCH
Confidence 99999999999999988 47789999999999999999996 8999999999999999999999999999 69999
Q ss_pred hhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 409 RQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 409 ~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
..|+||+||+||.|+. ..+|.+++.+.
T Consensus 358 ~~~~Qr~GR~gR~g~~-------g~~~~~~~~~~ 384 (410)
T 2j0s_A 358 ELYIHRIGRSGRYGRK-------GVAINFVKNDD 384 (410)
T ss_dssp HHHHHHHTTSSGGGCC-------EEEEEEEEGGG
T ss_pred HHHHHhcccccCCCCc-------eEEEEEecHHH
Confidence 9999999999998763 55677777644
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.98 E-value=5.7e-32 Score=304.87 Aligned_cols=126 Identities=18% Similarity=0.182 Sum_probs=74.1
Q ss_pred CchhHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHc---C------CceE--------eCCCCHHHHHHHHHhhc
Q psy11640 312 NPNKYRATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKM---N------KPYI--------YGPTSQSERIQILQNFK 372 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L---~------~~~i--------~G~~~~~eR~~il~~F~ 372 (552)
...|+..|..++.... ..+.++||||+++..++.++..| + +..+ ||++++.+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 4568888888887652 35679999999999999999987 2 2345 55999999999999999
Q ss_pred cCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHH
Q psy11640 373 LNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY 447 (552)
Q Consensus 373 ~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~ 447 (552)
++|+++|||+|+++++|||+|++++||+++ +|+|+.+|+||+|| ||..+ +.+|.|++.++.++..
T Consensus 458 ~~g~~~vLVaT~v~~~GiDip~v~~VI~~d-~p~s~~~~~Qr~GR-GR~~~--------g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDIAQCNLVILYE-YVGNVIKMIQTRGR-GRARG--------SKCFLLTSNAGVIEKE 522 (696)
T ss_dssp ---CCSCSEEEESSCCC---CCCSEEEEES-CC--CCCC----------CC--------CEEEEEESCHHHHHHH
T ss_pred hcCCccEEEEechhhcCCcCccCCEEEEeC-CCCCHHHHHHhhcc-CcCCC--------ceEEEEecCCCHHHHH
Confidence 437999999999999999999999999999 69999999999999 99743 4468888887765543
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=2.9e-32 Score=279.00 Aligned_cols=274 Identities=15% Similarity=0.117 Sum_probs=190.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCCCcEEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMGCGILVT 102 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~~~IvIt 102 (552)
+..++++|||+|||++++.++...+.++|||||+++|+.||.+++.+|.......+..+.|+.... ...++|+|+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 111 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVA 111 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEE
Confidence 468889999999999999988888999999999999999999999998865556788777765321 135899999
Q ss_pred cccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccC
Q psy11640 103 TYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP 182 (552)
Q Consensus 103 Ty~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~ 182 (552)
|++.+...... ..+...+|++||+||+|+.....
T Consensus 112 T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~-------------------------------------- 145 (337)
T 2z0m_A 112 TPGRLLDLWSK--------GVIDLSSFEIVIIDEADLMFEMG-------------------------------------- 145 (337)
T ss_dssp CHHHHHHHHHT--------TSCCGGGCSEEEEESHHHHHHTT--------------------------------------
T ss_pred CHHHHHHHHHc--------CCcchhhCcEEEEEChHHhhccc--------------------------------------
Confidence 99988532110 11223678999999887632100
Q ss_pred CCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhc-cceeeecceecccccchhhhhhhhcc
Q psy11640 183 NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS-HCKLGLTATLLREDDKIADLNFLIGP 261 (552)
Q Consensus 183 ~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~-~~~lgLTATp~r~d~~~~~L~~lig~ 261 (552)
.......++...+. ...+++||||.... ...+..+++.
T Consensus 146 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~SAT~~~~~--~~~~~~~~~~ 184 (337)
T 2z0m_A 146 ---------------------------------------FIDDIKIILAQTSNRKITGLFSATIPEEI--RKVVKDFITN 184 (337)
T ss_dssp ---------------------------------------CHHHHHHHHHHCTTCSEEEEEESCCCHHH--HHHHHHHSCS
T ss_pred ---------------------------------------cHHHHHHHHhhCCcccEEEEEeCcCCHHH--HHHHHHhcCC
Confidence 00111223333433 34557899995431 1122222211
Q ss_pred c-ccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccH
Q psy11640 262 K-LYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNV 340 (552)
Q Consensus 262 ~-~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~ 340 (552)
. ..... ..........+.++. ..+ ..+ ..+.. ..+.++||||+++
T Consensus 185 ~~~~~~~-------~~~~~~~~~~~~~~~-----------------------~~~-~~~-~~~~~--~~~~~~lvf~~~~ 230 (337)
T 2z0m_A 185 YEEIEAC-------IGLANVEHKFVHVKD-----------------------DWR-SKV-QALRE--NKDKGVIVFVRTR 230 (337)
T ss_dssp CEEEECS-------GGGGGEEEEEEECSS-----------------------SSH-HHH-HHHHT--CCCSSEEEECSCH
T ss_pred ceeeecc-------cccCCceEEEEEeCh-----------------------HHH-HHH-HHHHh--CCCCcEEEEEcCH
Confidence 1 00000 000111111111110 000 111 22222 3678999999999
Q ss_pred HHHHHHHHHc-CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhhHHHHhhhcc
Q psy11640 341 FALKHYAVKM-NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRIL 419 (552)
Q Consensus 341 ~~~~~l~~~L-~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~ 419 (552)
..++.++..| ++..+||+++..+|.++++.|++ |++++||+|+++++|+|+|++++||+++ +++|+..|.||+||+|
T Consensus 231 ~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gid~~~~~~Vi~~~-~~~s~~~~~Q~~GR~g 308 (337)
T 2z0m_A 231 NRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFRE-GEYDMLITTDVASRGLDIPLVEKVINFD-APQDLRTYIHRIGRTG 308 (337)
T ss_dssp HHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHT-TSCSEEEECHHHHTTCCCCCBSEEEESS-CCSSHHHHHHHHTTBC
T ss_pred HHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHc-CCCcEEEEcCccccCCCccCCCEEEEec-CCCCHHHhhHhcCccc
Confidence 9999999999 57789999999999999999995 8999999999999999999999999999 5999999999999999
Q ss_pred ccCCC
Q psy11640 420 RAKKG 424 (552)
Q Consensus 420 R~~~~ 424 (552)
|.|+.
T Consensus 309 R~g~~ 313 (337)
T 2z0m_A 309 RMGRK 313 (337)
T ss_dssp GGGCC
T ss_pred cCCCC
Confidence 99874
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.98 E-value=1.9e-32 Score=288.92 Aligned_cols=291 Identities=12% Similarity=0.107 Sum_probs=185.6
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-------~ 94 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.+++......+....|+.... .
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 157 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTT
T ss_pred CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhc
Confidence 45788899999999998776653 3568999999999999999999998865555666666654221 1
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+|+|++.+.... ....+....+++||+||||+.....
T Consensus 158 ~~~~iiv~T~~~l~~~l--------~~~~~~~~~~~~vViDEah~~~~~~------------------------------ 199 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDML--------NRRYLSPKYIKMFVLDEADEMLSRG------------------------------ 199 (414)
T ss_dssp TCCSEEEECHHHHHHHH--------HHTSSCSTTCCEEEECSHHHHHHTT------------------------------
T ss_pred CCCCEEEECHHHHHHHH--------HcCCcccccCcEEEEECHHHhhccC------------------------------
Confidence 45799999999874321 1112233568999999887632100
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchh
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIA 253 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~ 253 (552)
....+..++..+ +....+++||||.... ..
T Consensus 200 -----------------------------------------------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~ 230 (414)
T 3eiq_A 200 -----------------------------------------------FKDQIYDIFQKLNSNTQVVLLSATMPSDV--LE 230 (414)
T ss_dssp -----------------------------------------------THHHHHHHHTTSCTTCEEEEECSCCCHHH--HH
T ss_pred -----------------------------------------------cHHHHHHHHHhCCCCCeEEEEEEecCHHH--HH
Confidence 001112233333 3456799999985321 11
Q ss_pred hhhhhhc-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCe
Q psy11640 254 DLNFLIG-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332 (552)
Q Consensus 254 ~L~~lig-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~k 332 (552)
.+..++. +....... ...........+ ........|...+..++... .+.+
T Consensus 231 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~--~~~~ 282 (414)
T 3eiq_A 231 VTKKFMRDPIRILVKK------EELTLEGIRQFY--------------------INVEREEWKLDTLCDLYETL--TITQ 282 (414)
T ss_dssp HHTTTCSSCEEECCCC------CCCCTTSCCEEE--------------------EECSSSTTHHHHHHHHHHSS--CCSS
T ss_pred HHHHHcCCCEEEEecC------CccCCCCceEEE--------------------EEeChHHhHHHHHHHHHHhC--CCCc
Confidence 1111111 11000000 000000000000 00111234666777777655 6679
Q ss_pred EEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCC
Q psy11640 333 TIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGS 407 (552)
Q Consensus 333 vIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s 407 (552)
+||||+++..++.++..| ++..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++||+++ .++|
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~v~~Vi~~~-~p~s 360 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYD-LPTN 360 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC-C---CEEECSSCC--CCGGGCSCEEESS-CCSS
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc-CCCcEEEECCccccCCCccCCCEEEEeC-CCCC
Confidence 999999999999999988 46789999999999999999995 8999999999999999999999999999 6999
Q ss_pred hhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 408 RRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 408 ~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
+..|+||+||+||.|+. ..+|.|++.+.
T Consensus 361 ~~~~~Qr~GR~gR~g~~-------g~~~~~~~~~~ 388 (414)
T 3eiq_A 361 RENYIHRIGRGGRFGRK-------GVAINMVTEED 388 (414)
T ss_dssp THHHHHHSCCC--------------CEEEEECSTH
T ss_pred HHHhhhhcCcccCCCCC-------ceEEEEEcHHH
Confidence 99999999999998763 34677777653
No 23
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=282.51 Aligned_cols=292 Identities=16% Similarity=0.174 Sum_probs=196.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc------------------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCc
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV------------------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSM 82 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~------------------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~ 82 (552)
.+-.++++|||+|||++++.++... ..++|||||+++|+.||.+++.++.......
T Consensus 52 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 131 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVR 131 (417)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCce
Confidence 3567888999999999877655321 1469999999999999999999988655567
Q ss_pred EEEEecCcccC------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcc
Q psy11640 83 ICRFTSEAKDK------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPED 156 (552)
Q Consensus 83 I~~~~g~~~~~------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~ 156 (552)
+..+.|+.... ..+.+|+|+|++.|...... ..+....+++||+||+|+.....
T Consensus 132 ~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~~iViDEah~~~~~~------------ 191 (417)
T 2i4i_A 132 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--------GKIGLDFCKYLVLDEADRMLDMG------------ 191 (417)
T ss_dssp EEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--------TSBCCTTCCEEEESSHHHHHHTT------------
T ss_pred EEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--------CCcChhhCcEEEEEChhHhhccC------------
Confidence 77777765321 24579999999988532110 11223578999999887632100
Q ss_pred cccchhhhhhhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHh--h-
Q psy11640 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTI--V- 233 (552)
Q Consensus 157 ~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~--~- 233 (552)
| ...+..++.. +
T Consensus 192 -~----------------------------------------------------------------~~~~~~i~~~~~~~ 206 (417)
T 2i4i_A 192 -F----------------------------------------------------------------EPQIRRIVEQDTMP 206 (417)
T ss_dssp -C----------------------------------------------------------------HHHHHHHHTSSSCC
T ss_pred -c----------------------------------------------------------------HHHHHHHHHhccCC
Confidence 0 0111222221 1
Q ss_pred --hccceeeecceecccccchhhhhhhhcccc-cccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHh
Q psy11640 234 --QSHCKLGLTATLLREDDKIADLNFLIGPKL-YEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYV 310 (552)
Q Consensus 234 --~~~~~lgLTATp~r~d~~~~~L~~lig~~~-~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~ 310 (552)
.....+++|||+.+.. ...+..+++... ....... ..........++ .
T Consensus 207 ~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~-----------------------~ 257 (417)
T 2i4i_A 207 PKGVRHTMMFSATFPKEI--QMLARDFLDEYIFLAVGRVG----STSENITQKVVW-----------------------V 257 (417)
T ss_dssp CBTTBEEEEEESCCCHHH--HHHHHHHCSSCEEEEEC--------CCSSEEEEEEE-----------------------C
T ss_pred CcCCcEEEEEEEeCCHHH--HHHHHHHcCCCEEEEeCCCC----CCccCceEEEEE-----------------------e
Confidence 1345799999985421 111112222111 1100000 000011111111 1
Q ss_pred cCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 311 MNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
....|...+..++... ..+.++||||+++..++.++..| .+..+||++++.+|.++++.|++ |+++|||+|++
T Consensus 258 ~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlvaT~~ 335 (417)
T 2i4i_A 258 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPILVATAV 335 (417)
T ss_dssp CGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH-TSSCEEEECHH
T ss_pred ccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc-CCCCEEEECCh
Confidence 2234566666676654 35779999999999999999988 46789999999999999999996 89999999999
Q ss_pred cccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 386 ~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
+++|+|+|++++||+++ +++|+..|+||+||+||.|+. ..+|.|++...
T Consensus 336 ~~~Gidip~v~~Vi~~~-~p~s~~~~~Qr~GR~gR~g~~-------g~~~~~~~~~~ 384 (417)
T 2i4i_A 336 AARGLDISNVKHVINFD-LPSDIEEYVHRIGRTGRVGNL-------GLATSFFNERN 384 (417)
T ss_dssp HHTTSCCCCEEEEEESS-CCSSHHHHHHHHTTBCC--CC-------EEEEEEECGGG
T ss_pred hhcCCCcccCCEEEEEc-CCCCHHHHHHhcCccccCCCC-------ceEEEEEcccc
Confidence 99999999999999999 699999999999999998763 55677777643
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1.1e-30 Score=275.00 Aligned_cols=292 Identities=13% Similarity=0.146 Sum_probs=195.7
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC---CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK---PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~---~~~~ 97 (552)
+..++++|||+|||++++.++.. ...++|||||+++|+.||.+.+.++... +...+....+..... ....
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 144 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCC
T ss_pred CeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCC
Confidence 56788899999999998766642 2237999999999999999999988754 345677666654322 2357
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+|+|+|++.+....... ..+...++++||+||||+......
T Consensus 145 ~ivv~T~~~l~~~~~~~-------~~~~~~~~~~iViDEah~~~~~~~-------------------------------- 185 (412)
T 3fht_A 145 QIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQG-------------------------------- 185 (412)
T ss_dssp SEEEECHHHHHHHHTTS-------CSSCGGGCCEEEEETHHHHHSTTT--------------------------------
T ss_pred CEEEECchHHHHHHHhc-------CCcChhhCcEEEEeCHHHHhhcCC--------------------------------
Confidence 89999999884321100 112225799999999886321000
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLN 256 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~ 256 (552)
.......+...++ ....+++||||.... ...+.
T Consensus 186 --------------------------------------------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~ 219 (412)
T 3fht_A 186 --------------------------------------------HQDQSIRIQRMLPRNCQMLLFSATFEDSV--WKFAQ 219 (412)
T ss_dssp --------------------------------------------THHHHHHHHHTSCTTCEEEEEESCCCHHH--HHHHH
T ss_pred --------------------------------------------cHHHHHHHHhhCCCCceEEEEEeecCHHH--HHHHH
Confidence 0011112333332 346899999985421 11111
Q ss_pred hhhc-ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 257 FLIG-PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 257 ~lig-~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
.+++ +........ ...........+.++ ....|...+..++... .+.++||
T Consensus 220 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----------------------~~~~~~~~l~~~~~~~--~~~~~lv 271 (412)
T 3fht_A 220 KVVPDPNVIKLKRE----EETLDTIKQYYVLCS----------------------SRDEKFQALCNLYGAI--TIAQAMI 271 (412)
T ss_dssp HHSSSCEEECCCGG----GSSCTTEEEEEEECS----------------------SHHHHHHHHHHHHHHH--SSSEEEE
T ss_pred HhcCCCeEEeeccc----cccccCceEEEEEcC----------------------ChHHHHHHHHHHHhhc--CCCCEEE
Confidence 1111 111111100 000111111111111 1123556666676655 6789999
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCC----
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG---- 406 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~---- 406 (552)
||+++..++.++..| ++..+||++++.+|..+++.|++ |+++|||+|+++++|+|+|++++||+++ .|+
T Consensus 272 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~~~~Vi~~~-~p~~~~~ 349 (412)
T 3fht_A 272 FCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKVLVTTNVCARGIDVEQVSVVINFD-LPVDKDG 349 (412)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCSEEEECGGGTSSCCCTTEEEEEESS-CCBCSSS
T ss_pred EeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC-CCCcEEEEcCccccCCCccCCCEEEEEC-CCCCCCC
Confidence 999999999999988 57789999999999999999995 8999999999999999999999999999 474
Q ss_pred --ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 407 --SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 407 --s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+...|+||+||+||.++. ..+|.+++..
T Consensus 350 ~~s~~~~~Qr~GR~gR~g~~-------g~~~~~~~~~ 379 (412)
T 3fht_A 350 NPDNETYLHRIGRTGRFGKR-------GLAVNMVDSK 379 (412)
T ss_dssp SBCHHHHHHHHTTSSCTTCC-------EEEEEEECSH
T ss_pred CcchheeecccCcccCCCCC-------ceEEEEEcCh
Confidence 568999999999998763 5567777653
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=6.2e-33 Score=290.42 Aligned_cols=291 Identities=13% Similarity=0.148 Sum_probs=94.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMG 96 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~ 96 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.++.......+..+.|+.... ...
T Consensus 59 ~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 138 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD 138 (394)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCC
Confidence 45788999999999997766553 2458999999999999999999998865556788887765321 125
Q ss_pred CcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCC
Q psy11640 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSR 176 (552)
Q Consensus 97 ~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r 176 (552)
.+|+|+|++.+.....+ ..+...+++++|+||+|.....
T Consensus 139 ~~i~v~T~~~l~~~~~~--------~~~~~~~~~~vIiDEah~~~~~--------------------------------- 177 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSS--------------------------------- 177 (394)
T ss_dssp CSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHT---------------------------------
T ss_pred CCEEEECHHHHHHHHHh--------CCcchhhCcEEEEEChHHhhCC---------------------------------
Confidence 78999999987432110 1122357999999988763210
Q ss_pred CccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhhh
Q psy11640 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 177 ~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~L 255 (552)
. ....+..++..+ +....+++||||... ....+
T Consensus 178 ----------------------------------------~----~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~ 211 (394)
T 1fuu_A 178 ----------------------------------------G----FKEQIYQIFTLLPPTTQVVLLSATMPND--VLEVT 211 (394)
T ss_dssp ----------------------------------------T----CHHHHHHHHHHSCTTCEEEEECSSCCHH--HHHHH
T ss_pred ----------------------------------------C----cHHHHHHHHHhCCCCceEEEEEEecCHH--HHHHH
Confidence 0 011122233333 345689999998532 11111
Q ss_pred hhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 256 NFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 256 ~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
..+++. +..+..............+. ........|...+..++... .+.++||
T Consensus 212 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~--~~~~~lV 264 (394)
T 1fuu_A 212 TKFMRN-----------------PVRILVKKDELTLEGIKQFY--------VNVEEEEYKYECLTDLYDSI--SVTQAVI 264 (394)
T ss_dssp HHHCCS-----------------CEEEEECC-------------------------------------------------
T ss_pred HHhcCC-----------------CeEEEecCccccCCCceEEE--------EEcCchhhHHHHHHHHHhcC--CCCcEEE
Confidence 111111 11100000000000000000 00111123556666666654 5679999
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChhh
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQ 410 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~q 410 (552)
||+++..++.++..| ++..+||+++..+|.++++.|++ |+.+|||+|+++++|+|+|++++||+++ +++|+..
T Consensus 265 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gldi~~~~~Vi~~~-~p~s~~~ 342 (394)
T 1fuu_A 265 FCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRILISTDLLARGIDVQQVSLVINYD-LPANKEN 342 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC-CCCcEEEECChhhcCCCcccCCEEEEeC-CCCCHHH
Confidence 999999999999988 36789999999999999999995 8999999999999999999999999999 6999999
Q ss_pred HHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 411 EAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 411 ~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
|+||+||+||.|+. ..+|.+++.+
T Consensus 343 ~~Qr~GR~~R~g~~-------g~~~~~~~~~ 366 (394)
T 1fuu_A 343 YIHRIGRGGRFGRK-------GVAINFVTNE 366 (394)
T ss_dssp -------------------------------
T ss_pred HHHHcCcccCCCCC-------ceEEEEEchh
Confidence 99999999998763 3456666654
No 26
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=4.4e-30 Score=282.88 Aligned_cols=282 Identities=14% Similarity=0.127 Sum_probs=191.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc------------CCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD------------KPM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~------------~~~ 95 (552)
+-.+++||||+|||++++.++....+.+|||+|+++|+.||.+.+..+ + ..+..++|+... ...
T Consensus 60 ~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~-g---i~~~~l~~~~~~~~~~~~~~~l~~~~~ 135 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-G---ISATMLNASSSKEHVKWVHAEMVNKNS 135 (591)
T ss_dssp CCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHH-T---CCEEECCSSCCHHHHHHHHHHHHCTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhc-C---CcEEEEeCCCCHHHHHHHHHHhhcccC
Confidence 457889999999999998888777889999999999999999999987 3 356677766422 124
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+++|++.|..... -.......+....+++||+||||..... .+.|
T Consensus 136 ~~~Ilv~Tpe~L~~~~~---~~~~l~~~~~~~~i~~iViDEAH~is~~-----------g~df----------------- 184 (591)
T 2v1x_A 136 ELKLIYVTPEKIAKSKM---FMSRLEKAYEARRFTRIAVDEVHCCSQW-----------GHDF----------------- 184 (591)
T ss_dssp CCCEEEECHHHHHSCHH---HHHHHHHHHHTTCEEEEEEETGGGGSTT-----------CTTC-----------------
T ss_pred CCCEEEEChhHhhccHH---HHHHHHhhhhccCCcEEEEECccccccc-----------cccc-----------------
Confidence 68999999998853100 0001112223358999999999974320 0001
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L 255 (552)
+| ++.. ...+...++...+++|||||... ...++
T Consensus 185 r~---------------------------------------~~~~-----l~~l~~~~~~~~ii~lSAT~~~~--v~~~i 218 (591)
T 2v1x_A 185 RP---------------------------------------DYKA-----LGILKRQFPNASLIGLTATATNH--VLTDA 218 (591)
T ss_dssp CG---------------------------------------GGGG-----GGHHHHHCTTSEEEEEESSCCHH--HHHHH
T ss_pred HH---------------------------------------HHHH-----HHHHHHhCCCCcEEEEecCCCHH--HHHHH
Confidence 00 1100 01123344566789999999642 11222
Q ss_pred hhhhc---ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHh--hcC
Q psy11640 256 NFLIG---PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHE--RRG 330 (552)
Q Consensus 256 ~~lig---~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~--~~g 330 (552)
..+++ +..+.. ++..+.....+... ...+...+..|++... ..+
T Consensus 219 ~~~l~~~~~~~~~~--------~~~r~nl~~~v~~~-----------------------~~~~~~~~~~l~~~l~~~~~~ 267 (591)
T 2v1x_A 219 QKILCIEKCFTFTA--------SFNRPNLYYEVRQK-----------------------PSNTEDFIEDIVKLINGRYKG 267 (591)
T ss_dssp HHHTTCCSCEEEEC--------CCCCTTEEEEEEEC-----------------------CSSHHHHHHHHHHHHTTTTTT
T ss_pred HHHhCCCCcEEEec--------CCCCcccEEEEEeC-----------------------CCcHHHHHHHHHHHHHHhccC
Confidence 22221 111111 11111111111110 0111222333333332 267
Q ss_pred CeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC
Q psy11640 331 DKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG 405 (552)
Q Consensus 331 ~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~ 405 (552)
.++||||.++..++.++..| ++..+||++++.+|.++++.|+. ++++|||+|+++++|||+|++++||+++ .|
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~-g~~~VlVAT~a~~~GID~p~V~~VI~~~-~p 345 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA-NEIQVVVATVAFGMGIDKPDVRFVIHHS-MS 345 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSSSEEEECTTSCTTCCCSCEEEEEESS-CC
T ss_pred CCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeEEEEechhhcCCCcccccEEEEeC-CC
Confidence 89999999999999999998 46789999999999999999996 8999999999999999999999999999 69
Q ss_pred CChhhHHHHhhhccccCC
Q psy11640 406 GSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 406 ~s~~q~~Qr~GRi~R~~~ 423 (552)
.|...|+||+||+||.|.
T Consensus 346 ~s~~~y~Qr~GRaGR~G~ 363 (591)
T 2v1x_A 346 KSMENYYQESGRAGRDDM 363 (591)
T ss_dssp SSHHHHHHHHTTSCTTSS
T ss_pred CCHHHHHHHhccCCcCCC
Confidence 999999999999999876
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=9e-30 Score=269.30 Aligned_cols=288 Identities=16% Similarity=0.141 Sum_probs=189.6
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~ 94 (552)
+..++++|||+|||++++.++.. .+.++|||+|+++|+.||.+++.+|+. ....+..++|+.... .
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~ 115 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEE 115 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhc
Confidence 45788899999999987776554 567899999999999999999999976 456788888876430 1
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+|+|++.+.. .+..+...++++||+||||.......-
T Consensus 116 ~~~~Iiv~Tp~~l~~----------~l~~~~~~~~~~iViDEaH~~~~~~~~---------------------------- 157 (414)
T 3oiy_A 116 DDYHILVFSTQFVSK----------NREKLSQKRFDFVFVDDVDAVLKASRN---------------------------- 157 (414)
T ss_dssp TCCSEEEEEHHHHHH----------CHHHHTTCCCSEEEESCHHHHHHCHHH----------------------------
T ss_pred CCCCEEEECHHHHHH----------HHHHhccccccEEEEeChHhhhhccch----------------------------
Confidence 238999999998853 223355578999999999863210000
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh------------hccceeeec
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV------------QSHCKLGLT 242 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~------------~~~~~lgLT 242 (552)
.|-++.. +.+ ....+..++..+ .....+++|
T Consensus 158 ------------------------~d~~l~~----------~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~S 200 (414)
T 3oiy_A 158 ------------------------IDTLLMM----------VGI---PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSS 200 (414)
T ss_dssp ------------------------HHHHHHH----------TTC---CHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESS
T ss_pred ------------------------hhhHHhh----------cCC---cHHHHHHHHHhcccchhhhhcccCCCceEEEEe
Confidence 0000000 000 001122233333 345789999
Q ss_pred ceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHH
Q psy11640 243 ATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYL 322 (552)
Q Consensus 243 ATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~L 322 (552)
||+.........+..+++.... .............. ...+...+..+
T Consensus 201 AT~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~------------------------~~~~~~~l~~~ 247 (414)
T 3oiy_A 201 ATAKPRGIRPLLFRDLLNFTVG---------RLVSVARNITHVRI------------------------SSRSKEKLVEL 247 (414)
T ss_dssp CCSSCCSSTTHHHHHHHSCCSS---------CCCCCCCSEEEEEE------------------------SSCCHHHHHHH
T ss_pred cCCCcchhHHHHHHHhhccCcC---------ccccccccchheee------------------------ccCHHHHHHHH
Confidence 9954432211111111110000 00000001111111 11344555666
Q ss_pred HHHHhhcCCeEEEEeccHHHHHHHHHHc---C--Cc-eEeCCCCHHHHHHHHHhhccCCCeeEEEE----eCccccccCC
Q psy11640 323 IAYHERRGDKTIVFSDNVFALKHYAVKM---N--KP-YIYGPTSQSERIQILQNFKLNPKVNTIFV----SKVADTSFDL 392 (552)
Q Consensus 323 l~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~-~i~G~~~~~eR~~il~~F~~~g~~~vLv~----T~v~~~GlDl 392 (552)
+.. .+.++||||+++..++.++..| + +. .+||. +|. ++.|++ |+++|||+ |+++++|||+
T Consensus 248 l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~-g~~~vLvat~s~T~~~~~GiDi 317 (414)
T 3oiy_A 248 LEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV-GKINILIGVQAYYGKLTRGVDL 317 (414)
T ss_dssp HHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT-TSCSEEEEECCTTCCCCCCCCC
T ss_pred HHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC-CCCeEEEEecCcCchhhccCcc
Confidence 665 3589999999999999999988 3 34 56774 444 999995 89999999 9999999999
Q ss_pred CC-CCEEEEeccCC--CChhhHHHHhhhccccCCCCCCCceeEEEEEEe
Q psy11640 393 PE-ANVLIQISSHG--GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLV 438 (552)
Q Consensus 393 p~-a~~VI~~~~~~--~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lv 438 (552)
|+ +++||+++ .| .|+..|+||+||+||.|+++. ....++.|+
T Consensus 318 p~~v~~VI~~~-~p~~~~~~~y~qr~GR~gR~g~~~~---~~g~~i~~~ 362 (414)
T 3oiy_A 318 PERIKYVIFWG-TPSGPDVYTYIQASGRSSRILNGVL---VKGVSVIFE 362 (414)
T ss_dssp TTTCCEEEEES-CCTTTCHHHHHHHHGGGCCEETTEE---CCEEEEEEC
T ss_pred ccccCEEEEEC-CCCCCCHHHHHHHhCccccCCCCCC---cceEEEEEE
Confidence 99 99999999 58 899999999999999987510 136677777
No 28
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=8.7e-30 Score=299.18 Aligned_cols=291 Identities=16% Similarity=0.174 Sum_probs=198.8
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PM 95 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~ 95 (552)
..++++|||+|||++++.++. ..+.++||||||++|+.||.++|.+++...+..+..+++..... ..
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 679999999999999886553 34679999999999999999999987754345778877653211 13
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|++.+... +...++++||+||+|+
T Consensus 706 ~~dIvV~T~~ll~~~-------------~~~~~l~lvIiDEaH~------------------------------------ 736 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSD-------------VKFKDLGLLIVDEEHR------------------------------------ 736 (1151)
T ss_dssp CCSEEEECTHHHHSC-------------CCCSSEEEEEEESGGG------------------------------------
T ss_pred CCCEEEECHHHHhCC-------------ccccccceEEEechHh------------------------------------
Confidence 589999999977431 2236899999997765
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADL 255 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L 255 (552)
........+.........|+|||||..+... ..+
T Consensus 737 ---------------------------------------------~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~-~~~ 770 (1151)
T 2eyq_A 737 ---------------------------------------------FGVRHKERIKAMRANVDILTLTATPIPRTLN-MAM 770 (1151)
T ss_dssp ---------------------------------------------SCHHHHHHHHHHHTTSEEEEEESSCCCHHHH-HHH
T ss_pred ---------------------------------------------cChHHHHHHHHhcCCCCEEEEcCCCChhhHH-HHH
Confidence 2222222222223345789999999753211 000
Q ss_pred hhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 256 NFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 256 ~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
..+..+..... .............+. .+..+...++... .++.+++|
T Consensus 771 ~~~~~~~~i~~--------~~~~r~~i~~~~~~~------------------------~~~~i~~~il~~l-~~g~qvlv 817 (1151)
T 2eyq_A 771 SGMRDLSIIAT--------PPARRLAVKTFVREY------------------------DSMVVREAILREI-LRGGQVYY 817 (1151)
T ss_dssp TTTSEEEECCC--------CCCBCBCEEEEEEEC------------------------CHHHHHHHHHHHH-TTTCEEEE
T ss_pred hcCCCceEEec--------CCCCccccEEEEecC------------------------CHHHHHHHHHHHH-hcCCeEEE
Confidence 00000000000 000000001111111 1122333344443 46889999
Q ss_pred EeccHHHHHHHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCCh
Q psy11640 336 FSDNVFALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSR 408 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~ 408 (552)
||+++..++.++..| ++..+||+|++.+|.++++.|++ |+++|||+|+++++|||+|++++||+++...++.
T Consensus 818 f~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~-g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l 896 (1151)
T 2eyq_A 818 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 896 (1151)
T ss_dssp ECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-TSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCH
T ss_pred EECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc-CCCcEEEECCcceeeecccCCcEEEEeCCCCCCH
Confidence 999999888888777 46689999999999999999995 8999999999999999999999999988546889
Q ss_pred hhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHH
Q psy11640 409 RQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFL 455 (552)
Q Consensus 409 ~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l 455 (552)
.++.||+||+||.++ ..++|.++..+......+.+|.+.+
T Consensus 897 ~~l~Qr~GRvgR~g~-------~g~~~ll~~~~~~l~~~~~~rl~~i 936 (1151)
T 2eyq_A 897 AQLHQLRGRVGRSHH-------QAYAWLLTPHPKAMTTDAQKRLEAI 936 (1151)
T ss_dssp HHHHHHHTTCCBTTB-------CEEEEEEECCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhccCcCCC-------ceEEEEEECCccccCHHHHHHHHHH
Confidence 999999999999876 3667777776544444555555544
No 29
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=1.8e-29 Score=278.66 Aligned_cols=299 Identities=13% Similarity=0.119 Sum_probs=188.8
Q ss_pred hhccCeecCCCCchhHHHHHHHHh----c------CCcEEEEecCchhHHHHHHHHHhhh----CCCCCcEEEEecCccc
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT----V------RKRALVLCNSGVSVEQWKHQFKLWS----TADDSMICRFTSEAKD 92 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~----~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~----~~~~~~I~~~~g~~~~ 92 (552)
.+-.++++|||+|||++++.++.. . ..++|||||+++|+.||.+++.+++ +++...+..+.|+...
T Consensus 60 ~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~ 139 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDF 139 (579)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccH
Confidence 345677899999999998776542 1 2479999999999999999999876 3344456666655421
Q ss_pred C-------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhh
Q psy11640 93 K-------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRA 165 (552)
Q Consensus 93 ~-------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~ 165 (552)
. ....+|+|+|++.|..... .. .......+++||+||||+.... .|
T Consensus 140 ~~~~~~l~~~~~~IlV~Tp~~l~~~l~------~~-~~~~~~~~~~lViDEah~l~~~-------------gf------- 192 (579)
T 3sqw_A 140 RAAMNKMNKLRPNIVIATPGRLIDVLE------KY-SNKFFRFVDYKVLDEADRLLEI-------------GF------- 192 (579)
T ss_dssp HHHHHHHHHHCCSEEEECHHHHHHHHH------HH-HHHHCTTCCEEEEETHHHHTST-------------TT-------
T ss_pred HHHHHHHhcCCCCEEEECHHHHHHHHH------hc-cccccccCCEEEEEChHHhhcC-------------CC-------
Confidence 1 1257899999998853210 11 1112367999999998863210 00
Q ss_pred hhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh--------ccc
Q psy11640 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ--------SHC 237 (552)
Q Consensus 166 ~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~--------~~~ 237 (552)
...+..++..++ ...
T Consensus 193 ---------------------------------------------------------~~~~~~i~~~l~~~~~~~~~~~~ 215 (579)
T 3sqw_A 193 ---------------------------------------------------------RDDLETISGILNEKNSKSADNIK 215 (579)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHCSSCTTCCE
T ss_pred ---------------------------------------------------------HHHHHHHHHHhhhhhcccccCce
Confidence 011111222221 346
Q ss_pred eeeecceecccccchhhhhhhhcc-cccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhH
Q psy11640 238 KLGLTATLLREDDKIADLNFLIGP-KLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKY 316 (552)
Q Consensus 238 ~lgLTATp~r~d~~~~~L~~lig~-~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~ 316 (552)
.+++|||+...- ......+++. .......................+.++.. ...+.
T Consensus 216 ~l~~SAT~~~~v--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~ 272 (579)
T 3sqw_A 216 TLLFSATLDDKV--QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF---------------------ANSIF 272 (579)
T ss_dssp EEEEESSCCTHH--HHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST---------------------THHHH
T ss_pred EEEEeccCChHH--HHHHHHHcCCCceEEEeecCccccccccccceEEEEecch---------------------hhhHH
Confidence 899999985321 1111111111 00000000000000000000000111100 01122
Q ss_pred HHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHc--------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 317 RATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKM--------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 317 ~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
..+..+..... ..+.++||||+++..++.++..| .+..+||++++.+|.++++.|+. |+++|||+|+++
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~-g~~~vLVaT~~~ 351 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGILVCTDVG 351 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEEEEECGGG
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc-CCCeEEEEcchh
Confidence 23333333322 35789999999999999998877 24569999999999999999996 899999999999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++|||+|++++||+++ .|+++..|+||+||+||.|+. ..++.+++..
T Consensus 352 ~~GiDip~v~~VI~~~-~p~s~~~y~Qr~GRagR~g~~-------g~~i~~~~~~ 398 (579)
T 3sqw_A 352 ARGMDFPNVHEVLQIG-VPSELANYIHRIGRTARSGKE-------GSSVLFICKD 398 (579)
T ss_dssp TSSCCCTTCCEEEEES-CCSSTTHHHHHHTTSSCTTCC-------EEEEEEEEGG
T ss_pred hcCCCcccCCEEEEcC-CCCCHHHhhhhccccccCCCC-------ceEEEEEccc
Confidence 9999999999999999 699999999999999998763 4456666654
No 30
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=1.2e-29 Score=278.92 Aligned_cols=299 Identities=13% Similarity=0.118 Sum_probs=187.6
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc----------CCcEEEEecCchhHHHHHHHHHhhhC----CCCCcEEEEecCccc
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV----------RKRALVLCNSGVSVEQWKHQFKLWST----ADDSMICRFTSEAKD 92 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~----------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~----~~~~~I~~~~g~~~~ 92 (552)
.+-.++++|||+|||++++.++... ..++|||+|+++|+.||.+++++++. ++...+..+.|+...
T Consensus 111 ~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 190 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDF 190 (563)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCH
T ss_pred CCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCH
Confidence 3456778999999999987766421 23799999999999999999998742 233456666665421
Q ss_pred C-------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhh
Q psy11640 93 K-------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRA 165 (552)
Q Consensus 93 ~-------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~ 165 (552)
. ...++|+|+|++.+..... .. .......+++||+||||+.... .|
T Consensus 191 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~------~~-~~~~~~~~~~lViDEah~l~~~-------------~f------- 243 (563)
T 3i5x_A 191 RAAMNKMNKLRPNIVIATPGRLIDVLE------KY-SNKFFRFVDYKVLDEADRLLEI-------------GF------- 243 (563)
T ss_dssp HHHHHHHHHHCCSEEEECHHHHHHHHH------HH-HHHHCTTCCEEEEETHHHHTST-------------TT-------
T ss_pred HHHHHHHhcCCCCEEEECcHHHHHHHH------hc-cccccccceEEEEeCHHHHhcc-------------ch-------
Confidence 1 1357899999998853211 01 1112367999999998863210 00
Q ss_pred hhhcCCCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh--------hccc
Q psy11640 166 QMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV--------QSHC 237 (552)
Q Consensus 166 ~~~l~~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~--------~~~~ 237 (552)
...+..++..+ ....
T Consensus 244 ---------------------------------------------------------~~~~~~i~~~l~~~~~~~~~~~~ 266 (563)
T 3i5x_A 244 ---------------------------------------------------------RDDLETISGILNEKNSKSADNIK 266 (563)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHCSSCTTCCE
T ss_pred ---------------------------------------------------------HHHHHHHHHhhhhccccCccCce
Confidence 01111122221 1345
Q ss_pred eeeecceecccccchhhhhhhhcc-cccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhH
Q psy11640 238 KLGLTATLLREDDKIADLNFLIGP-KLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKY 316 (552)
Q Consensus 238 ~lgLTATp~r~d~~~~~L~~lig~-~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~ 316 (552)
.+++|||+...- ......+++. .......................+.++.. .....
T Consensus 267 ~l~~SAT~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 323 (563)
T 3i5x_A 267 TLLFSATLDDKV--QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF---------------------ANSIF 323 (563)
T ss_dssp EEEEESSCCTHH--HHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST---------------------THHHH
T ss_pred EEEEEccCCHHH--HHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh---------------------HhhHH
Confidence 899999985321 1111111111 00000000000000000000000111100 00111
Q ss_pred HHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHc--------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 317 RATQYLIAYHE--RRGDKTIVFSDNVFALKHYAVKM--------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 317 ~~l~~Ll~~~~--~~g~kvIVF~~~~~~~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
..+..+..... ..+.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |+++|||+|+++
T Consensus 324 ~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~ 402 (563)
T 3i5x_A 324 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGILVCTDVG 402 (563)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEEEEECGGG
T ss_pred HHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEcchh
Confidence 22333333222 36789999999999999998877 24569999999999999999996 899999999999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++|||+|++++||+++ .|.++..|+||+||+||.++. ..++.+++.+
T Consensus 403 ~~GiDip~v~~VI~~~-~p~s~~~y~Qr~GRagR~g~~-------g~~i~~~~~~ 449 (563)
T 3i5x_A 403 ARGMDFPNVHEVLQIG-VPSELANYIHRIGRTARSGKE-------GSSVLFICKD 449 (563)
T ss_dssp TSSCCCTTCCEEEEES-CCSSTTHHHHHHTTSSCTTCC-------EEEEEEEEGG
T ss_pred hcCCCcccCCEEEEEC-CCCchhhhhhhcCccccCCCC-------ceEEEEEchh
Confidence 9999999999999999 699999999999999998753 4456666654
No 31
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=2.8e-29 Score=273.30 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=194.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~ 97 (552)
+..+++||||+|||++++.++....+.+|||+|+++|+.||.+++..+. ..+..++|..... ....
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~ 116 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQI 116 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCC
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 4688999999999999988877778899999999999999999999863 3566676654211 1347
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+|+++|++.+... ...+.+...++++||+||||....- .+.|
T Consensus 117 ~ilv~Tpe~l~~~--------~~~~~l~~~~~~~vViDEaH~i~~~-----------g~~f------------------- 158 (523)
T 1oyw_A 117 RLLYIAPERLMLD--------NFLEHLAHWNPVLLAVDEAHCISQW-----------GHDF------------------- 158 (523)
T ss_dssp SEEEECHHHHTST--------THHHHHTTSCEEEEEESSGGGGCTT-----------SSCC-------------------
T ss_pred CEEEECHHHHhCh--------HHHHHHhhCCCCEEEEeCccccCcC-----------CCcc-------------------
Confidence 9999999988532 1234455578999999999874210 0000
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNF 257 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~ 257 (552)
.| ++. ....+...++....++|||||.... ..++..
T Consensus 159 --------------r~-----------------------~~~-----~l~~l~~~~~~~~~i~lSAT~~~~~--~~~i~~ 194 (523)
T 1oyw_A 159 --------------RP-----------------------EYA-----ALGQLRQRFPTLPFMALTATADDTT--RQDIVR 194 (523)
T ss_dssp --------------CH-----------------------HHH-----GGGGHHHHCTTSCEEEEESCCCHHH--HHHHHH
T ss_pred --------------HH-----------------------HHH-----HHHHHHHhCCCCCEEEEeCCCCHHH--HHHHHH
Confidence 00 000 0011334455567899999996431 122222
Q ss_pred hhc---ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEE
Q psy11640 258 LIG---PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334 (552)
Q Consensus 258 lig---~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvI 334 (552)
.++ +.++.. ++-.+.....+ .....+...+..++..+ .+.++|
T Consensus 195 ~l~~~~~~~~~~--------~~~r~~l~~~v------------------------~~~~~~~~~l~~~l~~~--~~~~~I 240 (523)
T 1oyw_A 195 LLGLNDPLIQIS--------SFDRPNIRYML------------------------MEKFKPLDQLMRYVQEQ--RGKSGI 240 (523)
T ss_dssp HHTCCSCEEEEC--------CCCCTTEEEEE------------------------EECSSHHHHHHHHHHHT--TTCCEE
T ss_pred HhCCCCCeEEeC--------CCCCCceEEEE------------------------EeCCCHHHHHHHHHHhc--CCCcEE
Confidence 221 111110 00000000000 11123455555555554 678999
Q ss_pred EEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCChh
Q psy11640 335 VFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRR 409 (552)
Q Consensus 335 VF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~~ 409 (552)
|||+++..++.++..| .+..+||++++.+|..+++.|++ ++++|||+|+++++|||+|++++||+++ .|+|..
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vlVaT~a~~~GiD~p~v~~VI~~~-~p~s~~ 318 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-DDLQIVVATVAFGMGINKPNVRFVVHFD-IPRNIE 318 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEEECTTSCTTTCCTTCCEEEESS-CCSSHH
T ss_pred EEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeEEEEechhhCCCCccCccEEEEEC-CCCCHH
Confidence 9999999999999998 45789999999999999999996 8999999999999999999999999999 699999
Q ss_pred hHHHHhhhccccCCC
Q psy11640 410 QEAQRLGRILRAKKG 424 (552)
Q Consensus 410 q~~Qr~GRi~R~~~~ 424 (552)
.|.||+||+||.|+.
T Consensus 319 ~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 319 SYYQETGRAGRDGLP 333 (523)
T ss_dssp HHHHHHTTSCTTSSC
T ss_pred HHHHHhccccCCCCC
Confidence 999999999998763
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.1e-30 Score=283.75 Aligned_cols=290 Identities=13% Similarity=0.157 Sum_probs=171.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc--CCCCCc
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD--KPMGCG 98 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~--~~~~~~ 98 (552)
.+..++++|||+|||++++.++... +.++|||||+++|+.||.++|.+++......+....++... .....+
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQ 237 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCS
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCC
Confidence 3667888999999999987766532 34899999999999999999999986444444433333221 124689
Q ss_pred EEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCc
Q psy11640 99 ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 178 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~ 178 (552)
|+|+|++.+.....+ ..+....+++||+||+|+......
T Consensus 238 Ivv~T~~~l~~~l~~--------~~~~~~~~~lIIiDEaH~~~~~~~--------------------------------- 276 (508)
T 3fho_A 238 IVIGTPGTVMDLMKR--------RQLDARDIKVFVLDEADNMLDQQG--------------------------------- 276 (508)
T ss_dssp EEEECHHHHHHHHHT--------TCSCCTTCCEEEECCHHHHTTC-----------------------------------
T ss_pred EEEECHHHHHHHHHc--------CCccccCCCEEEEechhhhcccCC---------------------------------
Confidence 999999987432111 112236799999999886421000
Q ss_pred cccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhh
Q psy11640 179 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNF 257 (552)
Q Consensus 179 ~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~ 257 (552)
....+..+...++ ....+++||||... ...+..
T Consensus 277 -------------------------------------------~~~~~~~i~~~~~~~~~~i~lSAT~~~~---~~~~~~ 310 (508)
T 3fho_A 277 -------------------------------------------LGDQSMRIKHLLPRNTQIVLFSATFSER---VEKYAE 310 (508)
T ss_dssp -------------------------------------------CHHHHHHHHHHSCTTCEEEEEESCCSTH---HHHHHH
T ss_pred -------------------------------------------cHHHHHHHHHhCCcCCeEEEEeCCCCHH---HHHHHH
Confidence 0112222444443 34579999998532 111111
Q ss_pred -hhccc-ccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 258 -LIGPK-LYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 258 -lig~~-~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
+.+.. ............+ .. ...........|...+..++... .+.++||
T Consensus 311 ~~~~~~~~i~~~~~~~~~~~----~~----------------------~~~~~~~~~~~k~~~l~~ll~~~--~~~~~LV 362 (508)
T 3fho_A 311 RFAPNANEIRLKTEELSVEG----IK----------------------QLYMDCQSEEHKYNVLVELYGLL--TIGQSII 362 (508)
T ss_dssp HHSTTCEEECCCCCC----C----CC----------------------CEEEEC--CHHHHHHHHHHHC-----CCCEEE
T ss_pred HhcCCCeEEEeccccCCccc----ce----------------------EEEEECCchHHHHHHHHHHHHhc--CCCcEEE
Confidence 11110 0000000000000 00 00000011234555666666554 6789999
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCC-----
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHG----- 405 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~----- 405 (552)
||+++.+++.++..| ++..+||+++..+|..+++.|++ |+++|||+|+++++|+|+|++++||+++. +
T Consensus 363 F~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~-g~~~VLVaT~~l~~GiDip~v~~VI~~~~-p~~~~~ 440 (508)
T 3fho_A 363 FCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV-GTSKVLVTTNVIARGIDVSQVNLVVNYDM-PLDQAG 440 (508)
T ss_dssp BCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS-SSCCCCEECC-----CCCTTCCEEEC-----CC---
T ss_pred EECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeEEEeCChhhcCCCccCCCEEEEECC-CCcccC
Confidence 999999999999988 46789999999999999999995 89999999999999999999999999994 6
Q ss_pred -CChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 406 -GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 406 -~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
.|+..|+||+||+||.++. ..++.+++.
T Consensus 441 ~~s~~~~~Qr~GRagR~g~~-------g~~i~l~~~ 469 (508)
T 3fho_A 441 RPDPQTYLHRIGRTGRFGRV-------GVSINFVHD 469 (508)
T ss_dssp --CTHHHHHTTSCCC------------CEEEEEECT
T ss_pred CCCHHHHHHHhhhcCCCCCC-------cEEEEEEeC
Confidence 7899999999999998763 335555654
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=7.2e-30 Score=275.32 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=90.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC---CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK---PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~---~~~~ 97 (552)
+-.++++|||+|||++++.++... ..++|||+|+++|+.||.+.+.++... +...+....+..... ....
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 211 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCC
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCC
Confidence 567888999999999987776532 227999999999999999999887753 344566666554321 2346
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCC
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRP 177 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~ 177 (552)
+|+|+|++.+....... ..+...++++||+||+|+..... .|
T Consensus 212 ~Ivv~Tp~~l~~~l~~~-------~~~~~~~~~~iViDEah~~~~~~------------~~------------------- 253 (479)
T 3fmp_B 212 QIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQ------------GH------------------- 253 (479)
T ss_dssp SEEEECHHHHHHHHTTS-------CCCCGGGCCEEEECCHHHHHTST------------TH-------------------
T ss_pred CEEEECchHHHHHHHhc-------CCcCcccCCEEEEECHHHHhhcC------------Cc-------------------
Confidence 89999999874321000 11223679999999988632100 00
Q ss_pred ccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhh
Q psy11640 178 LWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLN 256 (552)
Q Consensus 178 ~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~ 256 (552)
......+...++ ....+++||||.... ..+.
T Consensus 254 ---------------------------------------------~~~~~~i~~~~~~~~~~i~~SAT~~~~~---~~~~ 285 (479)
T 3fmp_B 254 ---------------------------------------------QDQSIRIQRMLPRNCQMLLFSATFEDSV---WKFA 285 (479)
T ss_dssp ---------------------------------------------HHHHHHHHTTSCTTSEEEEEESCCCHHH---HHHH
T ss_pred ---------------------------------------------HHHHHHHHhhCCccceEEEEeCCCCHHH---HHHH
Confidence 001111222222 346899999985321 1111
Q ss_pred hhhcccccccCHHHHHHcCCCcceEEEEEEcC-CCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEE
Q psy11640 257 FLIGPKLYEANWLELQKRGFIARVQCAEVWCP-MSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIV 335 (552)
Q Consensus 257 ~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~-l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIV 335 (552)
. .++..+....+... .......++ .........|...+..++... .+.++||
T Consensus 286 ~-----------------~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~--~~~~~lv 338 (479)
T 3fmp_B 286 Q-----------------KVVPDPNVIKLKREEETLDTIKQY--------YVLCSSRDEKFQALCNLYGAI--TIAQAMI 338 (479)
T ss_dssp H-----------------HHSSSEEEEEEC--------------------------------------------------
T ss_pred H-----------------HHcCCCeEEeccccccCcCCceEE--------EEEeCCHHHHHHHHHHHHhhc--cCCceEE
Confidence 0 01111111111000 000000000 111112234556666666554 5679999
Q ss_pred EeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCC----
Q psy11640 336 FSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGG---- 406 (552)
Q Consensus 336 F~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~---- 406 (552)
||+++..++.++..| ++..+||++++.+|..+++.|++ |+++|||+|+++++|||+|++++||+++ .|+
T Consensus 339 F~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~-g~~~iLv~T~~~~~GlDip~v~~VI~~d-~p~~~~~ 416 (479)
T 3fmp_B 339 FCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKVLVTTNVCARGIDVEQVSVVINFD-LPVDKDG 416 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc-CCCcEEEEccccccCCccccCCEEEEec-CCCCCcc
Confidence 999999999999988 46789999999999999999996 8999999999999999999999999999 464
Q ss_pred --ChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 407 --SRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 407 --s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+...|+||+||+||.++. ..++.|++..
T Consensus 417 ~~s~~~~~Qr~GRagR~g~~-------G~~i~~~~~~ 446 (479)
T 3fmp_B 417 NPDNETYLHRIGRTGRFGKR-------GLAVNMVDSK 446 (479)
T ss_dssp -------------------------------------
T ss_pred CCCHHHHHHHhcccccCCCC-------ceEEEEEcCc
Confidence 457999999999998763 3356666543
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.1e-29 Score=286.10 Aligned_cols=297 Identities=14% Similarity=0.145 Sum_probs=192.5
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~ 94 (552)
...++.+|||+|||++++.++.. .+.+++|||||++|+.||.++|.+|+......+..++|+.... .
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~ 469 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN 469 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc
Confidence 46789999999999999887754 4789999999999999999999999854456788888876431 1
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+|+|++.+.. .+...++++||+||+|+..... .
T Consensus 470 g~~~IvVgT~~ll~~-------------~~~~~~l~lVVIDEaHr~g~~q------------------r----------- 507 (780)
T 1gm5_A 470 GQIDVVIGTHALIQE-------------DVHFKNLGLVIIDEQHRFGVKQ------------------R----------- 507 (780)
T ss_dssp SCCCEEEECTTHHHH-------------CCCCSCCCEEEEESCCCC----------------------------------
T ss_pred CCCCEEEECHHHHhh-------------hhhccCCceEEecccchhhHHH------------------H-----------
Confidence 348999999987632 1223789999999998731100 0
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhh
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIAD 254 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~ 254 (552)
. . +.........+++||||......
T Consensus 508 --~---------------------------------------~-----------l~~~~~~~~vL~mSATp~p~tl~--- 532 (780)
T 1gm5_A 508 --E---------------------------------------A-----------LMNKGKMVDTLVMSATPIPRSMA--- 532 (780)
T ss_dssp --C---------------------------------------C-----------CCSSSSCCCEEEEESSCCCHHHH---
T ss_pred --H---------------------------------------H-----------HHHhCCCCCEEEEeCCCCHHHHH---
Confidence 0 0 00011246689999999643111
Q ss_pred hhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEE
Q psy11640 255 LNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334 (552)
Q Consensus 255 L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvI 334 (552)
..++|...... ..++. .+ -.+.. . ......+...+...+......+.+++
T Consensus 533 -~~~~g~~~~s~-i~~~p-~~-r~~i~--~------------------------~~~~~~~~~~l~~~i~~~l~~g~qvl 582 (780)
T 1gm5_A 533 -LAFYGDLDVTV-IDEMP-PG-RKEVQ--T------------------------MLVPMDRVNEVYEFVRQEVMRGGQAF 582 (780)
T ss_dssp -HHHTCCSSCEE-ECCCC-SS-CCCCE--E------------------------CCCCSSTHHHHHHHHHHHTTTSCCBC
T ss_pred -HHHhCCcceee-eeccC-CC-CcceE--E------------------------EEeccchHHHHHHHHHHHHhcCCcEE
Confidence 11112110000 00000 00 00000 0 00111222233334444445788999
Q ss_pred EEeccHHH--------HHHHHHHc--------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEE
Q psy11640 335 VFSDNVFA--------LKHYAVKM--------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVL 398 (552)
Q Consensus 335 VF~~~~~~--------~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~V 398 (552)
|||+.++. ++.++..| ++..+||+|++.+|..+++.|++ |+++|||+|+++++|||+|++++|
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~-G~~~ILVaT~vie~GIDiP~v~~V 661 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE-GRYDILVSTTVIEVGIDVPRANVM 661 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT-TSSSBCCCSSCCCSCSCCTTCCEE
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeEEEECCCCCccccCCCCCEE
Confidence 99986533 44454444 46779999999999999999995 899999999999999999999999
Q ss_pred EEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCe
Q psy11640 399 IQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSY 462 (552)
Q Consensus 399 I~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~ 462 (552)
|+++.+..+..++.||+||+||.+.. .++|.+.+..+ ....+|...+.+....|
T Consensus 662 Ii~d~~r~~l~~l~Qr~GRaGR~g~~-------g~~ill~~~~~---~~~~~rl~~l~~~~dgf 715 (780)
T 1gm5_A 662 VIENPERFGLAQLHQLRGRVGRGGQE-------AYCFLVVGDVG---EEAMERLRFFTLNTDGF 715 (780)
T ss_dssp EBCSCSSSCTTHHHHHHHTSCCSSTT-------CEEECCCCSCC---HHHHHHHHHHHTCCCSH
T ss_pred EEeCCCCCCHHHHHHHhcccCcCCCC-------CEEEEEECCCC---hHHHHHHHHHHhhhccc
Confidence 99995335789999999999998763 33444444322 22344555555443344
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-27 Score=275.31 Aligned_cols=311 Identities=13% Similarity=0.034 Sum_probs=197.1
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTY 104 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy 104 (552)
+..++++|||+|||+++..++.. .+.++||++|+++|+.||.++|..+++ .++.++|+.... ...+|+|+|+
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-~~~~IvV~Tp 176 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-PDAGCLVMTT 176 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-TTCSEEEEEH
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-CCCCEEEEcH
Confidence 45788899999999998766653 467999999999999999999999885 688899876543 3578999999
Q ss_pred cccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCC
Q psy11640 105 SMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG 184 (552)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g 184 (552)
++|.....+ ......++++||+||+|......
T Consensus 177 e~L~~~L~~--------~~~~l~~l~lVViDEaH~l~d~~---------------------------------------- 208 (1010)
T 2xgj_A 177 EILRSMLYR--------GSEVMREVAWVIFDEVHYMRDKE---------------------------------------- 208 (1010)
T ss_dssp HHHHHHHHH--------TCTTGGGEEEEEEETGGGGGCTT----------------------------------------
T ss_pred HHHHHHHHc--------CcchhhcCCEEEEechhhhcccc----------------------------------------
Confidence 987532110 01112689999999988632100
Q ss_pred ccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhhhcccc
Q psy11640 185 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGPKL 263 (552)
Q Consensus 185 ~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~lig~~~ 263 (552)
....+..++..++ ....++||||+.+.......+....+...
T Consensus 209 -------------------------------------rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~ 251 (1010)
T 2xgj_A 209 -------------------------------------RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 251 (1010)
T ss_dssp -------------------------------------THHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCE
T ss_pred -------------------------------------hhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCe
Confidence 0111222333343 46789999998643322222322222111
Q ss_pred --cccCHHHHHHcCCCcceEEEEEEcC-------------CCHHHHHHHHhhhhh-hhhhH----Hhc-C--chh-----
Q psy11640 264 --YEANWLELQKRGFIARVQCAEVWCP-------------MSPEFYREYLVCKTS-KRLLL----YVM-N--PNK----- 315 (552)
Q Consensus 264 --~~~~~~el~~~g~l~~~~~~~v~~~-------------l~~~~~~~y~~~~~~-~~~~~----~~~-~--~~K----- 315 (552)
+..+ +--.+......+.+ +....+...+..... ..... ... . ..|
T Consensus 252 ~vi~~~-------~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~ 324 (1010)
T 2xgj_A 252 HIVYTN-------FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAK 324 (1010)
T ss_dssp EEEEEC-------CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------------------------
T ss_pred EEEecC-------CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 1110 00111111111100 011111111100000 00000 000 0 001
Q ss_pred ---HHHHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHcC----------------------------------------
Q psy11640 316 ---YRATQYLIAYHER-RGDKTIVFSDNVFALKHYAVKMN---------------------------------------- 351 (552)
Q Consensus 316 ---~~~l~~Ll~~~~~-~g~kvIVF~~~~~~~~~l~~~L~---------------------------------------- 351 (552)
...+..++..+.. .+.++||||.++..++.++..|.
T Consensus 325 ~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 404 (1010)
T 2xgj_A 325 GDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 404 (1010)
T ss_dssp ----CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 1223344444332 44599999999999999887662
Q ss_pred ----CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE----eccC---CCChhhHHHHhhhccc
Q psy11640 352 ----KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ----ISSH---GGSRRQEAQRLGRILR 420 (552)
Q Consensus 352 ----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~----~~~~---~~s~~q~~Qr~GRi~R 420 (552)
+..+||++++.+|..+++.|++ |.++|||+|+++++|||+|++++||. |+.. ++|+.+|.||+||+||
T Consensus 405 l~~gI~~~Hggl~~~eR~~ve~~F~~-G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 405 LRRGIGIHHSGLLPILKEVIEILFQE-GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR 483 (1010)
T ss_dssp HHHTEEEESTTSCHHHHHHHHHHHHT-TCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCC
T ss_pred HhCCeeEECCCCCHHHHHHHHHHHhc-CCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhccc
Confidence 4568999999999999999996 89999999999999999999999998 7721 6799999999999999
Q ss_pred cCCCCCCCceeEEEEEEecCC
Q psy11640 421 AKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 421 ~~~~k~~~~~~v~vy~lvs~~ 441 (552)
.|++. ...+|.+++.+
T Consensus 484 ~G~d~-----~G~vi~l~~~~ 499 (1010)
T 2xgj_A 484 RGLDD-----RGIVIMMIDEK 499 (1010)
T ss_dssp TTTCS-----SEEEEEEECSC
T ss_pred CCCCC-----ceEEEEEECCC
Confidence 98754 36778777765
No 36
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=4.4e-28 Score=279.75 Aligned_cols=310 Identities=13% Similarity=0.134 Sum_probs=212.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc------CCC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD------KPM 95 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~------~~~ 95 (552)
.+..++++|||+|||++++.++... ..++|||||+++|+.||.++|..|... .+ ..+.... ...
T Consensus 300 ~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~---~v--~~~~s~~~l~~~L~~~ 374 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPD---SV--NGSENTAGLKRNLDKD 374 (1038)
T ss_dssp GGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTSTT---CS--SSSCCCHHHHHHHHCS
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhccc---cc--ccccCHHHHHHHhcCC
Confidence 3578999999999999987665432 258999999999999999999998742 11 1111110 013
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCC
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKS 175 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~ 175 (552)
..+|+|+|++.|....... .....+ ..+.+||+||||+...
T Consensus 375 ~~~IiVtTiqkl~~~l~~~----~~~~~~--~~~~lvIiDEAHrs~~--------------------------------- 415 (1038)
T 2w00_A 375 DNKIIVTTIQKLNNLMKAE----SDLPVY--NQQVVFIFDECHRSQF--------------------------------- 415 (1038)
T ss_dssp SCCEEEEEHHHHHHHHHHC----CCCGGG--GSCEEEEEESCCTTHH---------------------------------
T ss_pred CCCEEEEEHHHHHHHHhcc----cchhcc--ccccEEEEEccchhcc---------------------------------
Confidence 5789999999885421000 000112 4689999998887431
Q ss_pred CCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccc--hh
Q psy11640 176 RPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDK--IA 253 (552)
Q Consensus 176 r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~--~~ 253 (552)
...++.+...++....+||||||.+.++. ..
T Consensus 416 -----------------------------------------------~~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~ 448 (1038)
T 2w00_A 416 -----------------------------------------------GEAQKNLKKKFKRYYQFGFTGTPIFPENALGSE 448 (1038)
T ss_dssp -----------------------------------------------HHHHHHHHHHCSSEEEEEEESSCCCSTTCTTSC
T ss_pred -----------------------------------------------hHHHHHHHHhCCcccEEEEeCCccccccchhhh
Confidence 12234466677778999999999987652 23
Q ss_pred hhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHH--------HHHHhhhhhhhhhHHhcCchhHHH-HHHHHH
Q psy11640 254 DLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFY--------REYLVCKTSKRLLLYVMNPNKYRA-TQYLIA 324 (552)
Q Consensus 254 ~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~--------~~y~~~~~~~~~~~~~~~~~K~~~-l~~Ll~ 324 (552)
....++|+.++.+++.++++.|++.|+.+.. ....+... ..+.... . .....++.++.. +..++.
T Consensus 449 ~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y--~~v~~~~~~~~~e~d~~~~~~i~---~-~~~l~~~~ri~~I~~~Il~ 522 (1038)
T 2w00_A 449 TTASVFGRELHSYVITDAIRDEKVLKFKVDY--NDVRPQFKSLETETDEKKLSAAE---N-QQAFLHPMRIQEITQYILN 522 (1038)
T ss_dssp CHHHHHCSEEEEECHHHHHHHTSSCCEEEEE--CCCCGGGHHHHTCCCHHHHHHTC---S-TTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCeeEeecHHHHHhCCCcCCeEEEE--EeccchhhhccccccHHHHHHHH---H-HHHhcCHHHHHHHHHHHHH
Confidence 5667889999999999999999999976422 21122110 1111100 0 011125555554 345555
Q ss_pred HHhh---------cCCeEEEEeccHHHHHHHHHHc---C--------------C-ceEeCC----------C--------
Q psy11640 325 YHER---------RGDKTIVFSDNVFALKHYAVKM---N--------------K-PYIYGP----------T-------- 359 (552)
Q Consensus 325 ~~~~---------~g~kvIVF~~~~~~~~~l~~~L---~--------------~-~~i~G~----------~-------- 359 (552)
.+.. .+.++||||.++.++..+...| + + ..++|+ +
T Consensus 523 ~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~ 602 (1038)
T 2w00_A 523 NFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTS 602 (1038)
T ss_dssp HHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGG
T ss_pred HHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCcccccccccccccccccc
Confidence 4321 3468999999999999888776 2 1 234442 2
Q ss_pred --CH-----------------------------HHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccCCCCh
Q psy11640 360 --SQ-----------------------------SERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSR 408 (552)
Q Consensus 360 --~~-----------------------------~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~s~ 408 (552)
++ .+|.+++++|++ +++++||+|+++.+|+|+|.+ .+++++ .|-+.
T Consensus 603 ~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~-g~i~ILIvvd~lltGfDiP~l-~tlylD-kpl~~ 679 (1038)
T 2w00_A 603 AMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN-QDIDLLIVVGMFLTGFDAPTL-NTLFVD-KNLRY 679 (1038)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT-TSSSEEEESSTTSSSCCCTTE-EEEEEE-SCCCH
T ss_pred ccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc-CCCeEEEEcchHHhCcCcccc-cEEEEc-cCCCc
Confidence 22 248899999996 899999999999999999999 556788 47888
Q ss_pred hhHHHHhhhccccCCC-CCCCceeEEEEEEecC
Q psy11640 409 RQEAQRLGRILRAKKG-AIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 409 ~q~~Qr~GRi~R~~~~-k~~~~~~v~vy~lvs~ 440 (552)
..++||+||++|.+++ |. .+.|++++..
T Consensus 680 ~~liQaIGRtnR~~~~~K~----~G~IVdf~~~ 708 (1038)
T 2w00_A 680 HGLMQAFSRTNRIYDATKT----FGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHHTTCCCCCTTCC----SEEEEESSCC
T ss_pred cceeehhhccCcCCCCCCC----cEEEEEcccc
Confidence 9999999999999875 43 5788888864
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.95 E-value=3.2e-27 Score=266.40 Aligned_cols=300 Identities=15% Similarity=0.188 Sum_probs=197.9
Q ss_pred hhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---CCCCcEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---PMGCGIL 100 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~Iv 100 (552)
.+..++++|||+|||+++..++. ..+.+++|++|+++|+.||.+++++|... ...++.++|+.... ....+|+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~-g~~v~~~~G~~~~~~~~~~~~~Ii 118 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRDEHLGDCDII 118 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCSSCSTTCSEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc-CCEEEEEeCCCCcchhhccCCCEE
Confidence 45678889999999999876664 23679999999999999999999766543 46788888876432 2468999
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
|+|++++.....+. ..++ .++++||+||+|..... .
T Consensus 119 v~Tpe~l~~~l~~~------~~~l--~~~~~vIiDE~H~l~~~-------------~----------------------- 154 (702)
T 2p6r_A 119 VTTSEKADSLIRNR------ASWI--KAVSCLVVDEIHLLDSE-------------K----------------------- 154 (702)
T ss_dssp EEEHHHHHHHHHTT------CSGG--GGCCEEEETTGGGGGCT-------------T-----------------------
T ss_pred EECHHHHHHHHHcC------hhHH--hhcCEEEEeeeeecCCC-------------C-----------------------
Confidence 99999874321110 0112 57899999998863210 0
Q ss_pred cCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHh----hhccceeeecceecccccchhhhh
Q psy11640 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTI----VQSHCKLGLTATLLREDDKIADLN 256 (552)
Q Consensus 181 ~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~----~~~~~~lgLTATp~r~d~~~~~L~ 256 (552)
....+..++.. -+....+++|||+.. ..++.
T Consensus 155 -----------------------------------------r~~~~~~ll~~l~~~~~~~~ii~lSATl~n----~~~~~ 189 (702)
T 2p6r_A 155 -----------------------------------------RGATLEILVTKMRRMNKALRVIGLSATAPN----VTEIA 189 (702)
T ss_dssp -----------------------------------------THHHHHHHHHHHHHHCTTCEEEEEECCCTT----HHHHH
T ss_pred -----------------------------------------cccHHHHHHHHHHhcCcCceEEEECCCcCC----HHHHH
Confidence 00111112222 235678999999853 34455
Q ss_pred hhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEE
Q psy11640 257 FLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336 (552)
Q Consensus 257 ~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF 336 (552)
.+++...+..++. -.+... .+..... . .|... .... ...-.+...+.+++ ..+.++|||
T Consensus 190 ~~l~~~~~~~~~r-------~~~l~~-~~~~~~~-~---~~~~~--~~~~---~~~~~~~~~~~~~~----~~~~~~LVF 248 (702)
T 2p6r_A 190 EWLDADYYVSDWR-------PVPLVE-GVLCEGT-L---ELFDG--AFST---SRRVKFEELVEECV----AENGGVLVF 248 (702)
T ss_dssp HHTTCEEEECCCC-------SSCEEE-EEECSSE-E---EEEET--TEEE---EEECCHHHHHHHHH----HTTCCEEEE
T ss_pred HHhCCCcccCCCC-------CccceE-EEeeCCe-e---eccCc--chhh---hhhhhHHHHHHHHH----hcCCCEEEE
Confidence 5555444332211 011111 0100000 0 00000 0000 00000233333332 367899999
Q ss_pred eccHHHHHHHHHHc-----------------------------------CCceEeCCCCHHHHHHHHHhhccCCCeeEEE
Q psy11640 337 SDNVFALKHYAVKM-----------------------------------NKPYIYGPTSQSERIQILQNFKLNPKVNTIF 381 (552)
Q Consensus 337 ~~~~~~~~~l~~~L-----------------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv 381 (552)
|+++..++.++..| ++..+||++++.+|..+++.|++ |.++|||
T Consensus 249 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~~vlv 327 (702)
T 2p6r_A 249 ESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR-GNIKVVV 327 (702)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT-TSCCEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC-CCCeEEE
Confidence 99999888776544 47789999999999999999995 8999999
Q ss_pred EeCccccccCCCCCCEEEE----ec--cCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCch
Q psy11640 382 VSKVADTSFDLPEANVLIQ----IS--SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443 (552)
Q Consensus 382 ~T~v~~~GlDlp~a~~VI~----~~--~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~ 443 (552)
+|+++++|||+|++++||. |+ ..+.|..++.||+||+||.+.++ ...+|.+++....
T Consensus 328 aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~-----~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE-----RGEAIIIVGKRDR 390 (702)
T ss_dssp ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS-----CEEEEEECCGGGH
T ss_pred ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC-----CceEEEEecCccH
Confidence 9999999999999999998 55 24789999999999999998654 3677888877553
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-27 Score=273.76 Aligned_cols=310 Identities=14% Similarity=0.084 Sum_probs=192.6
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcccc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSM 106 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~ 106 (552)
.++++|||+|||+++..++.. .++++||++|+++|+.||.++|.++++ .++.++|+.... ...+|+|+|++.
T Consensus 202 vLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-~~~~IlV~Tpe~ 276 (1108)
T 3l9o_A 202 VLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-PDAGCLVMTTEI 276 (1108)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-CSCSEEEEEHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-CCCCEEEeChHH
Confidence 477899999999998877764 478999999999999999999999885 688888876533 458999999998
Q ss_pred cccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCCcc
Q psy11640 107 ISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHI 186 (552)
Q Consensus 107 l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i 186 (552)
|.+...+. ...+ .++++||+||+|+.... .
T Consensus 277 L~~~L~~~------~~~l--~~l~lVVIDEaH~l~d~-------------~----------------------------- 306 (1108)
T 3l9o_A 277 LRSMLYRG------SEVM--REVAWVIFDEVHYMRDK-------------E----------------------------- 306 (1108)
T ss_dssp HHHHHHHC------SSHH--HHEEEEEEETGGGTTSH-------------H-----------------------------
T ss_pred HHHHHHcC------cccc--ccCCEEEEhhhhhcccc-------------c-----------------------------
Confidence 75421110 0112 57899999988763210 0
Q ss_pred ccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhhhcc--cc
Q psy11640 187 FLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGP--KL 263 (552)
Q Consensus 187 ~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~lig~--~~ 263 (552)
....+..++..++ ....++||||+.+.......+....+. .+
T Consensus 307 -----------------------------------rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~v 351 (1108)
T 3l9o_A 307 -----------------------------------RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHI 351 (1108)
T ss_dssp -----------------------------------HHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEE
T ss_pred -----------------------------------hHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEE
Confidence 0111222333333 456899999965432222222222221 11
Q ss_pred cccCHHHHHHcCCCcceEEEEEE---------cC----CCHHHHHHHHhhhhh-------------hhhhHHhcCchh--
Q psy11640 264 YEANWLELQKRGFIARVQCAEVW---------CP----MSPEFYREYLVCKTS-------------KRLLLYVMNPNK-- 315 (552)
Q Consensus 264 ~~~~~~el~~~g~l~~~~~~~v~---------~~----l~~~~~~~y~~~~~~-------------~~~~~~~~~~~K-- 315 (552)
+..++ .-.+.....+. ++ .....+......... ...........+
T Consensus 352 i~~~~-------rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (1108)
T 3l9o_A 352 VYTNF-------RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGD 424 (1108)
T ss_dssp EEECC-------CSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------
T ss_pred EecCC-------CcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 11110 00111111100 00 001111111100000 000000000000
Q ss_pred -HHHHHHHHHHHh-hcCCeEEEEeccHHHHHHHHHHcC------------------------------------------
Q psy11640 316 -YRATQYLIAYHE-RRGDKTIVFSDNVFALKHYAVKMN------------------------------------------ 351 (552)
Q Consensus 316 -~~~l~~Ll~~~~-~~g~kvIVF~~~~~~~~~l~~~L~------------------------------------------ 351 (552)
...+..++..+. ..+.++||||.++..++.++..|.
T Consensus 425 ~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 504 (1108)
T 3l9o_A 425 AKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLR 504 (1108)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHH
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhh
Confidence 223334444433 245699999999999999988772
Q ss_pred --CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEeccC-------CCChhhHHHHhhhccccC
Q psy11640 352 --KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSH-------GGSRRQEAQRLGRILRAK 422 (552)
Q Consensus 352 --~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~-------~~s~~q~~Qr~GRi~R~~ 422 (552)
+..+||++++.+|..+++.|++ |.++|||+|+++++|||+|++++||.++.+ +.|+..|+||+||+||.|
T Consensus 505 ~gV~~~Hg~l~~~~R~~v~~~F~~-G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 505 RGIGIHHSGLLPILKEVIEILFQE-GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp HTEEEECSCSCHHHHHHHHHHHHH-TCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred cCeeeecCCCCHHHHHHHHHHHhC-CCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 5679999999999999999996 899999999999999999999999965421 236778999999999998
Q ss_pred CCCCCCceeEEEEEEecCCc
Q psy11640 423 KGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 423 ~~k~~~~~~v~vy~lvs~~t 442 (552)
.++ .+++|.+.+...
T Consensus 584 ~d~-----~G~~ill~~~~~ 598 (1108)
T 3l9o_A 584 LDD-----RGIVIMMIDEKM 598 (1108)
T ss_dssp SCS-----SEEEEEEECCCC
T ss_pred CCC-----ceEEEEEecCCc
Confidence 654 377887877653
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.2e-26 Score=262.35 Aligned_cols=305 Identities=15% Similarity=0.160 Sum_probs=196.1
Q ss_pred hhccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---CCCCcE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---PMGCGI 99 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---~~~~~I 99 (552)
.+..++++|||+|||+++..++. ..+.+++|++|+++|+.||.++++++... ...++.++|+.... ....+|
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~-g~~v~~~~G~~~~~~~~~~~~~I 124 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELI-GFKVAMTSGDYDTDDAWLKNYDI 124 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGG-TCCEEECCSCSSSCCGGGGGCSE
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCchhhcCCCCE
Confidence 35678889999999999876654 24679999999999999999999766543 45788888876432 236899
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|+|++++..... ....++ .++++||+||+|....
T Consensus 125 iv~Tpe~l~~~~~------~~~~~l--~~~~~vIiDE~H~l~~------------------------------------- 159 (715)
T 2va8_A 125 IITTYEKLDSLWR------HRPEWL--NEVNYFVLDELHYLND------------------------------------- 159 (715)
T ss_dssp EEECHHHHHHHHH------HCCGGG--GGEEEEEECSGGGGGC-------------------------------------
T ss_pred EEEcHHHHHHHHh------CChhHh--hccCEEEEechhhcCC-------------------------------------
Confidence 9999998743211 011123 5789999999876210
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLI 259 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~li 259 (552)
. .....+..++..++....+++|||+.. ..++..++
T Consensus 160 -------------------------------------~---~~~~~l~~i~~~~~~~~ii~lSATl~n----~~~~~~~l 195 (715)
T 2va8_A 160 -------------------------------------P---ERGPVVESVTIRAKRRNLLALSATISN----YKQIAKWL 195 (715)
T ss_dssp -------------------------------------T---TTHHHHHHHHHHHHTSEEEEEESCCTT----HHHHHHHH
T ss_pred -------------------------------------c---ccchHHHHHHHhcccCcEEEEcCCCCC----HHHHHHHh
Confidence 0 001222334445556789999999853 23444455
Q ss_pred cccccccCHHHHHHcCCCcceEEEEEEcCCCHHHH-HHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEec
Q psy11640 260 GPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFY-REYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSD 338 (552)
Q Consensus 260 g~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~-~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~ 338 (552)
+...+..++. -.+........+...... -.|.... .. .......+...+.+++ ..+.++||||+
T Consensus 196 ~~~~~~~~~r-------~~~l~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~----~~~~~~LVF~~ 260 (715)
T 2va8_A 196 GAEPVATNWR-------PVPLIEGVIYPERKKKEYNVIFKDNT-TK---KVHGDDAIIAYTLDSL----SKNGQVLVFRN 260 (715)
T ss_dssp TCEEEECCCC-------SSCEEEEEEEECSSTTEEEEEETTSC-EE---EEESSSHHHHHHHHHH----TTTCCEEEECS
T ss_pred CCCccCCCCC-------CCCceEEEEecCCcccceeeecCcch-hh---hcccchHHHHHHHHHH----hcCCCEEEEEC
Confidence 5433322211 111111100000000000 0000000 00 0001122333333332 36789999999
Q ss_pred cHHHHHHHHHHc-----------------------------------------CCceEeCCCCHHHHHHHHHhhccCCCe
Q psy11640 339 NVFALKHYAVKM-----------------------------------------NKPYIYGPTSQSERIQILQNFKLNPKV 377 (552)
Q Consensus 339 ~~~~~~~l~~~L-----------------------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~ 377 (552)
++..++.++..| ++..+||++++.+|..+++.|++ |.+
T Consensus 261 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~-g~~ 339 (715)
T 2va8_A 261 SRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQ-RKI 339 (715)
T ss_dssp SHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT-TCS
T ss_pred CHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHc-CCC
Confidence 999888877665 25679999999999999999995 899
Q ss_pred eEEEEeCccccccCCCCCCEEEE----ec------cCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 378 NTIFVSKVADTSFDLPEANVLIQ----IS------SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 378 ~vLv~T~v~~~GlDlp~a~~VI~----~~------~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
+|||+|+++++|||+|++++||. |+ ..+.|..++.||+||+||.+.+. ...+|.+.+...
T Consensus 340 ~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~-----~G~~~~l~~~~~ 409 (715)
T 2va8_A 340 KVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQ-----IGESIVVVRDKE 409 (715)
T ss_dssp CEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCS-----CEEEEEECSCGG
T ss_pred eEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCC-----CceEEEEeCCch
Confidence 99999999999999999999997 66 13788999999999999998654 366777776643
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.95 E-value=5.6e-27 Score=265.10 Aligned_cols=298 Identities=15% Similarity=0.179 Sum_probs=199.0
Q ss_pred hhccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC---CCCcE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP---MGCGI 99 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~---~~~~I 99 (552)
.+..++++|||+|||+++..++. ..+.+++|++|+++|+.||.+++++|... ...++.++|+..... ...+|
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~-g~~v~~~~G~~~~~~~~~~~~~I 117 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDEWLGKYDI 117 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG-TCCEEEECSCSSCCCGGGGGCSE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc-CCEEEEecCCCCccccccCCCCE
Confidence 35678889999999999865543 24789999999999999999999876643 457888888754322 36899
Q ss_pred EEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCcc
Q psy11640 100 LVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLW 179 (552)
Q Consensus 100 vItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~ 179 (552)
+|+|++++..... ....++ .++++||+||+|.....
T Consensus 118 iv~Tpe~l~~~~~------~~~~~l--~~~~~vIiDE~H~l~~~------------------------------------ 153 (720)
T 2zj8_A 118 IIATAEKFDSLLR------HGSSWI--KDVKILVADEIHLIGSR------------------------------------ 153 (720)
T ss_dssp EEECHHHHHHHHH------HTCTTG--GGEEEEEEETGGGGGCT------------------------------------
T ss_pred EEECHHHHHHHHH------cChhhh--hcCCEEEEECCcccCCC------------------------------------
Confidence 9999998743210 001112 57899999988863210
Q ss_pred ccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhh
Q psy11640 180 VAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFL 258 (552)
Q Consensus 180 ~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~l 258 (552)
.....+..++..+. ....+++|||+.. ..++..+
T Consensus 154 -----------------------------------------~r~~~~~~ll~~l~~~~~ii~lSATl~n----~~~~~~~ 188 (720)
T 2zj8_A 154 -----------------------------------------DRGATLEVILAHMLGKAQIIGLSATIGN----PEELAEW 188 (720)
T ss_dssp -----------------------------------------TTHHHHHHHHHHHBTTBEEEEEECCCSC----HHHHHHH
T ss_pred -----------------------------------------cccHHHHHHHHHhhcCCeEEEEcCCcCC----HHHHHHH
Confidence 00111222333332 4678999999853 2444445
Q ss_pred hcccccccCHHHHHHcCCCcceEEEE-EEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEe
Q psy11640 259 IGPKLYEANWLELQKRGFIARVQCAE-VWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFS 337 (552)
Q Consensus 259 ig~~~~~~~~~el~~~g~l~~~~~~~-v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~ 337 (552)
++...+..++ .++.... +..... ..|.... . .....+...+.+++ ..+.++||||
T Consensus 189 l~~~~~~~~~---------rp~~l~~~~~~~~~----~~~~~~~--~-----~~~~~~~~~~~~~~----~~~~~~LVF~ 244 (720)
T 2zj8_A 189 LNAELIVSDW---------RPVKLRRGVFYQGF----VTWEDGS--I-----DRFSSWEELVYDAI----RKKKGALIFV 244 (720)
T ss_dssp TTEEEEECCC---------CSSEEEEEEEETTE----EEETTSC--E-----EECSSTTHHHHHHH----HTTCCEEEEC
T ss_pred hCCcccCCCC---------CCCcceEEEEeCCe----eeccccc--h-----hhhhHHHHHHHHHH----hCCCCEEEEe
Confidence 5544332221 1111111 110000 0000000 0 01223334433333 3678999999
Q ss_pred ccHHHHHHHHHHc--------------------------------------CCceEeCCCCHHHHHHHHHhhccCCCeeE
Q psy11640 338 DNVFALKHYAVKM--------------------------------------NKPYIYGPTSQSERIQILQNFKLNPKVNT 379 (552)
Q Consensus 338 ~~~~~~~~l~~~L--------------------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~~v 379 (552)
+++..++.++..| ++..+||++++.+|..+++.|++ |.++|
T Consensus 245 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~~v 323 (720)
T 2zj8_A 245 NMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK-GIIKA 323 (720)
T ss_dssp SCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT-TSSCE
T ss_pred cCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC-CCCeE
Confidence 9999988877655 26779999999999999999995 89999
Q ss_pred EEEeCccccccCCCCCCEEEE----ec---cCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchh
Q psy11640 380 IFVSKVADTSFDLPEANVLIQ----IS---SHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTME 444 (552)
Q Consensus 380 Lv~T~v~~~GlDlp~a~~VI~----~~---~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e 444 (552)
||+|+++++|||+|++++||. |+ +.+.|..++.||+||+||.+.++ ...+|.+++....+
T Consensus 324 lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~-----~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 324 VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDE-----VGEGIIVSTSDDPR 390 (720)
T ss_dssp EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCS-----EEEEEEECSSSCHH
T ss_pred EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCC-----CceEEEEecCccHH
Confidence 999999999999999999987 54 23788999999999999988654 46778888876543
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.95 E-value=1.5e-26 Score=267.96 Aligned_cols=317 Identities=13% Similarity=0.044 Sum_probs=193.7
Q ss_pred hccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTY 104 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy 104 (552)
+..++++|||+|||++++.++. ..+.++||++|+++|+.||.++|.++++ ...++.++|+.... ...+|+|+|+
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~~-~~~~IlV~Tp 131 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQIN-PDANCLIMTT 131 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEEC-TTSSEEEEEH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCccC-CCCCEEEECH
Confidence 4678899999999998776654 3467899999999999999999998763 46788888876432 3578999999
Q ss_pred cccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCC
Q psy11640 105 SMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG 184 (552)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g 184 (552)
+.|..... .......++++||+||+|..... .|
T Consensus 132 e~L~~~l~--------~~~~~l~~l~lvViDEaH~l~d~-------------~~-------------------------- 164 (997)
T 4a4z_A 132 EILRSMLY--------RGADLIRDVEFVIFDEVHYVNDQ-------------DR-------------------------- 164 (997)
T ss_dssp HHHHHHHH--------HTCSGGGGEEEEEECCTTCCCTT-------------CT--------------------------
T ss_pred HHHHHHHH--------hCchhhcCCCEEEEECccccccc-------------ch--------------------------
Confidence 98843211 01111257999999999863210 00
Q ss_pred ccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhhhhcccc
Q psy11640 185 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNFLIGPKL 263 (552)
Q Consensus 185 ~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~lig~~~ 263 (552)
...+..++..++ ....++||||+.........+....+...
T Consensus 165 --------------------------------------g~~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~ 206 (997)
T 4a4z_A 165 --------------------------------------GVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 206 (997)
T ss_dssp --------------------------------------TCCHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCE
T ss_pred --------------------------------------HHHHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCce
Confidence 011223444443 45678999998543322222211111111
Q ss_pred cccCHHHHHHcCCCcceEEE--------EEEcC---CCHHHHHH---HHhhhh---------------------------
Q psy11640 264 YEANWLELQKRGFIARVQCA--------EVWCP---MSPEFYRE---YLVCKT--------------------------- 302 (552)
Q Consensus 264 ~~~~~~el~~~g~l~~~~~~--------~v~~~---l~~~~~~~---y~~~~~--------------------------- 302 (552)
+.... .+--.|.... .+... +....+.. .+....
T Consensus 207 ~vi~~-----~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 281 (997)
T 4a4z_A 207 YVIST-----PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTR 281 (997)
T ss_dssp EEEEC-----SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------------------
T ss_pred EEEec-----CCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccc
Confidence 00000 0000111100 00000 00111100 000000
Q ss_pred -----------------------------hhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---
Q psy11640 303 -----------------------------SKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM--- 350 (552)
Q Consensus 303 -----------------------------~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L--- 350 (552)
............++..+...+... ...++||||.++..++.++..|
T Consensus 282 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~ 359 (997)
T 4a4z_A 282 DGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGI 359 (997)
T ss_dssp -----------------------------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTC
T ss_pred ccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcC
Confidence 000000011223444444444433 5579999999999999998877
Q ss_pred -----------------------------------------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccc
Q psy11640 351 -----------------------------------------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTS 389 (552)
Q Consensus 351 -----------------------------------------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~G 389 (552)
++..+||++++.+|..+++.|+. |.++|||+|+++++|
T Consensus 360 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~-G~~kVLvAT~~~a~G 438 (997)
T 4a4z_A 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK-GFIKVLFATETFAMG 438 (997)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT-TCCSEEEECTHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC-CCCcEEEEchHhhCC
Confidence 34678999999999999999996 899999999999999
Q ss_pred cCCCCCCEEEEecc--------CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhH
Q psy11640 390 FDLPEANVLIQISS--------HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446 (552)
Q Consensus 390 lDlp~a~~VI~~~~--------~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~ 446 (552)
||+|+ ..||+.+. .+.|+..|+||+||+||.|.+. .+.+|.+...+..+..
T Consensus 439 IDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~-----~G~vi~l~~~~~~~~~ 497 (997)
T 4a4z_A 439 LNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS-----TGTVIVMAYNSPLSIA 497 (997)
T ss_dssp CCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS-----SEEEEEECCSSCCCHH
T ss_pred CCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc-----ceEEEEecCCCcchHH
Confidence 99999 55555331 1228999999999999998654 3667766654444443
No 42
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=3.5e-25 Score=258.78 Aligned_cols=259 Identities=17% Similarity=0.148 Sum_probs=166.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~ 94 (552)
+..++++|||+|||++++.++.. .+.++|||+|+++|+.|+.++|.+|. .....+..++|+.... .
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~ 172 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEE 172 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHT
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhC
Confidence 45688899999999987776553 56789999999999999999999976 3456888888876431 1
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCC
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHK 174 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~ 174 (552)
...+|+|+|++.|.. ++..+...++++||+||+|.......-
T Consensus 173 g~~~IlV~Tp~rL~~----------~l~~l~~~~l~~lViDEaH~l~~~~r~---------------------------- 214 (1104)
T 4ddu_A 173 DDYHILVFSTQFVSK----------NREKLSQKRFDFVFVDDVDAVLKASRN---------------------------- 214 (1104)
T ss_dssp SCCSEEEEEHHHHHH----------SHHHHHTSCCSEEEESCHHHHTTSSHH----------------------------
T ss_pred CCCCEEEECHHHHHH----------HHHhhcccCcCEEEEeCCCcccccccc----------------------------
Confidence 248999999998843 223355578999999999863220000
Q ss_pred CCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh------------hccceeeec
Q psy11640 175 SRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV------------QSHCKLGLT 242 (552)
Q Consensus 175 ~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~------------~~~~~lgLT 242 (552)
.|-++ +...........++..+ .....+++|
T Consensus 215 ------------------------~Dr~L-------------~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~S 257 (1104)
T 4ddu_A 215 ------------------------IDTLL-------------MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSS 257 (1104)
T ss_dssp ------------------------HHHHH-------------HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEEC
T ss_pred ------------------------chhhh-------------HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEc
Confidence 00000 00000001122233333 245689999
Q ss_pred ceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHH
Q psy11640 243 ATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYL 322 (552)
Q Consensus 243 ATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~L 322 (552)
||+.........+...++..+. .............. ...|...+..+
T Consensus 258 AT~~p~~~~~~~~~~~l~i~v~---------~~~~~~~~i~~~~~------------------------~~~k~~~L~~l 304 (1104)
T 4ddu_A 258 ATAKPRGIRPLLFRDLLNFTVG---------RLVSVARNITHVRI------------------------SSRSKEKLVEL 304 (1104)
T ss_dssp BSSCCCSSTTHHHHHHTCCCCC---------BCCCCCCCEEEEEE------------------------SCCCHHHHHHH
T ss_pred CCCCcHHHHHHHhhcceeEEec---------cCCCCcCCceeEEE------------------------ecCHHHHHHHH
Confidence 9964332111111121110000 00000111111111 11344555566
Q ss_pred HHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCc-eEeCCCCHHHHHHHHHhhccCCCeeEEEE----eCccccccCC
Q psy11640 323 IAYHERRGDKTIVFSDNVFALKHYAVKM-----NKP-YIYGPTSQSERIQILQNFKLNPKVNTIFV----SKVADTSFDL 392 (552)
Q Consensus 323 l~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~-~i~G~~~~~eR~~il~~F~~~g~~~vLv~----T~v~~~GlDl 392 (552)
+... +.++||||+++..++.++..| .+. .+|| +|.+ ++.|++ |+++|||+ |+++++|||+
T Consensus 305 l~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~-G~~~VLVatas~TdvlarGIDi 374 (1104)
T 4ddu_A 305 LEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV-GKINILIGVQAYYGKLTRGVDL 374 (1104)
T ss_dssp HHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH-TSCSEEEEETTTHHHHCCSCCC
T ss_pred HHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC-CCCCEEEEecCCCCeeEecCcC
Confidence 6653 589999999999999999988 344 6777 3555 999996 89999999 9999999999
Q ss_pred CC-CCEEEEeccCCC
Q psy11640 393 PE-ANVLIQISSHGG 406 (552)
Q Consensus 393 p~-a~~VI~~~~~~~ 406 (552)
|+ +++||+++ .|.
T Consensus 375 p~~V~~VI~~d-~P~ 388 (1104)
T 4ddu_A 375 PERIKYVIFWG-TPS 388 (1104)
T ss_dssp TTTCCEEEEES-CCE
T ss_pred CCCCCEEEEEC-CCC
Confidence 99 99999999 466
No 43
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.92 E-value=7.4e-26 Score=240.67 Aligned_cols=257 Identities=13% Similarity=0.103 Sum_probs=160.5
Q ss_pred hccCeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC-CCCcEEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP-MGCGILVT 102 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~-~~~~IvIt 102 (552)
+-.++++|||+|||++++.++. ..+.++|||+||++|+.|+.+.|. + ..|...+|...... ....+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~---~---~~v~~~~~~~~~~~~~~~~~~~~ 76 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR---G---EPIRYMTPAVQSERTGNEIVDFM 76 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT---T---SCEEEC---------CCCSEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC---C---CeEEEEecCccccCCCCceEEEE
Confidence 4567889999999999855443 456799999999999999998876 2 34665555422211 23445566
Q ss_pred cccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccC
Q psy11640 103 TYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAP 182 (552)
Q Consensus 103 Ty~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~ 182 (552)
|.+.+.+ .........++++||+||+|+...
T Consensus 77 ~~~~l~~---------~l~~~~~~~~l~~vViDEaH~~~~---------------------------------------- 107 (431)
T 2v6i_A 77 CHSTFTM---------KLLQGVRVPNYNLYIMDEAHFLDP---------------------------------------- 107 (431)
T ss_dssp EHHHHHH---------HHHHTCCCCCCSEEEEESTTCCSH----------------------------------------
T ss_pred chHHHHH---------HHhcCccccCCCEEEEeCCccCCc----------------------------------------
Confidence 6665532 122221236899999999886210
Q ss_pred CCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHh--hhccceeeecceecccccchhhhhhhhc
Q psy11640 183 NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTI--VQSHCKLGLTATLLREDDKIADLNFLIG 260 (552)
Q Consensus 183 ~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~--~~~~~~lgLTATp~r~d~~~~~L~~lig 260 (552)
.. ......+... ......+++||||...-. .+ ..
T Consensus 108 ----------------------------------~~----~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~---~~---~~ 143 (431)
T 2v6i_A 108 ----------------------------------AS----VAARGYIETRVSMGDAGAIFMTATPPGTTE---AF---PP 143 (431)
T ss_dssp ----------------------------------HH----HHHHHHHHHHHHTTSCEEEEEESSCTTCCC---SS---CC
T ss_pred ----------------------------------cH----HHHHHHHHHHhhCCCCcEEEEeCCCCcchh---hh---cC
Confidence 00 0000111111 125678999999974211 00 00
Q ss_pred ccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccH
Q psy11640 261 PKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNV 340 (552)
Q Consensus 261 ~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~ 340 (552)
+ -.+.. .+....+. .++..+..++. ..+.++||||+++
T Consensus 144 --------------~-~~~i~--~~~~~~~~----------------------~~~~~~~~~l~---~~~~~~lVF~~~~ 181 (431)
T 2v6i_A 144 --------------S-NSPII--DEETRIPD----------------------KAWNSGYEWIT---EFDGRTVWFVHSI 181 (431)
T ss_dssp --------------C-SSCCE--EEECCCCS----------------------SCCSSCCHHHH---SCSSCEEEECSSH
T ss_pred --------------C-CCcee--eccccCCH----------------------HHHHHHHHHHH---cCCCCEEEEeCCH
Confidence 0 00111 11111110 00000111222 2466899999999
Q ss_pred HHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCE-----------------E
Q psy11640 341 FALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANV-----------------L 398 (552)
Q Consensus 341 ~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~-----------------V 398 (552)
..++.++..| .+..+||+ +|.++++.|++ |+++|||+|+++++|||+| +.+ |
T Consensus 182 ~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~-g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~v 255 (431)
T 2v6i_A 182 KQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS-EKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVS 255 (431)
T ss_dssp HHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH-SCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC-CCCeEEEECchHHcCcccC-CcEEEecCccccceeccccee
Confidence 9999999988 46778987 68899999996 8999999999999999999 555 4
Q ss_pred EEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEE
Q psy11640 399 IQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYT 436 (552)
Q Consensus 399 I~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~ 436 (552)
|+++ .+.+..+|+||+||+||.+.++. .+++|.
T Consensus 256 i~~~-~p~~~~~~~Qr~GR~GR~g~~~~----~~~~~~ 288 (431)
T 2v6i_A 256 MQGP-IAITPASAAQRRGRIGRNPEKLG----DIYAYS 288 (431)
T ss_dssp EEEE-EECCHHHHHHHHTTSSCCTTCCC----CEEEEC
T ss_pred eccc-ccCCHHHHHHhhhccCCCCCCCC----eEEEEc
Confidence 5567 48899999999999999885332 455554
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.92 E-value=4.6e-25 Score=235.10 Aligned_cols=87 Identities=20% Similarity=0.133 Sum_probs=71.0
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE---
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ--- 400 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~--- 400 (552)
.+.++||||+++..++.++..| .+..+|| .+|.++++.|++ |+++|||+|+++++|||+| +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~-g~~~vLVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ-KKPDFILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC---------CCCSEEEESSSTTCCTTCC-CSEEEECCE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC-CCceEEEECChhheeeccC-ceEEEeCCc
Confidence 4789999999999999999988 4667898 478999999996 8999999999999999999 999985
Q ss_pred ----------------eccCCCChhhHHHHhhhccccC
Q psy11640 401 ----------------ISSHGGSRRQEAQRLGRILRAK 422 (552)
Q Consensus 401 ----------------~~~~~~s~~q~~Qr~GRi~R~~ 422 (552)
++ .|.+..+|+||+||+||.+
T Consensus 250 ~~~pv~~~~~~~~vi~~~-~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGP-LRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp EEEEEEETTTTEEEEEEE-EECCHHHHHHHHTTSSCCT
T ss_pred cceeeecccccceeeccc-cccCHHHHHHhccccCCCC
Confidence 67 4889999999999999974
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.92 E-value=5.5e-25 Score=235.33 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=78.0
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEEec-
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQIS- 402 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~~~- 402 (552)
.+.++||||+++..++.++..| .+..+||++ ++++++.|++ |+++|||+|+++++|||+|+ ++||.++
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~-g~~~vLVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKL-TDWDFVVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGS-SCCSEEEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhcc-CCceEEEECCHHHhCcCCCC-CEEEECCC
Confidence 4669999999999999999998 345678864 4679999995 89999999999999999999 9999866
Q ss_pred ------------------cCCCChhhHHHHhhhccccCC
Q psy11640 403 ------------------SHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 403 ------------------~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
..|.|..+|+||+||+||.+.
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 137889999999999999986
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.92 E-value=1.7e-24 Score=239.17 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=83.7
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEE-----
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVL----- 398 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~V----- 398 (552)
.+.++||||+++..++.++..| .+..+||+ +|.++++.|++ |+++|||+|+++++|||+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~-g~~~VLVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL-TDWDFVVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH-SCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC-CCcEEEEECcHHHcCcccC-ceEEEECcc
Confidence 4679999999999999999998 45678884 78899999996 8999999999999999998 8988
Q ss_pred ---------------EEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEec
Q psy11640 399 ---------------IQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVS 439 (552)
Q Consensus 399 ---------------I~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs 439 (552)
|+++ .|.+..+|+||+||+||.+.++ ...|.|++
T Consensus 428 ~~~P~~~~~~~~~~~i~~d-~P~s~~~yiQR~GRaGR~g~~~------G~ai~l~~ 476 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGP-IPVTPASAAQRRGRIGRNPAQE------DDQYVFSG 476 (618)
T ss_dssp EEEEEEECSSSCEEEEEEE-EECCHHHHHHHHTTSSCCTTCC------CEEEEECS
T ss_pred eecceecccCCCceEEccc-ccCCHHHHHHhccccCCCCCCC------CeEEEEcc
Confidence 6666 4889999999999999996532 33566776
No 47
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.92 E-value=1.6e-24 Score=232.17 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=81.3
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE---
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ--- 400 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~--- 400 (552)
.+.++||||+++..++.++..| .+..+||+ +|..+++.|++ |+.+|||+|+++++|||+|+ ++||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~-g~~~iLVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN-GDWDFVITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS-CCCSEEEESSCC---CCCSC-SEEEECCE
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC-CCceEEEECChHHhCeecCC-CEEEECCc
Confidence 4679999999999999999988 35668884 78899999995 89999999999999999999 99998
Q ss_pred -----------------eccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 401 -----------------ISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 401 -----------------~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++ .|.|+.+|+||+||+||.+... ...|.|++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~d-~p~s~~~~~QR~GRaGR~g~~~------G~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNP-SPITSASAAQRRGRVGRNPNQV------GDEYHYGGAT 313 (459)
T ss_dssp ECCEEEECSSSCEEEECSC-EECCHHHHHHHHTTSSCCTTCC------CEEEEECSCC
T ss_pred ccccccccccccccccccC-CCCCHHHHHHhccccCCCCCCC------CeEEEEEccc
Confidence 56 4889999999999999987421 2345566653
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=8.2e-24 Score=255.58 Aligned_cols=305 Identities=15% Similarity=0.146 Sum_probs=187.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh--------------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT--------------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~--------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~ 93 (552)
+-.++++|||+|||++|..++.. .+.++|+|+|+++|+.|..++|.+.+..-...|+.++|+....
T Consensus 96 ~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~ 175 (1724)
T 4f92_B 96 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLC 175 (1724)
T ss_dssp CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSC
T ss_pred CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence 34678899999999999877652 1357999999999999999999876654456889999986432
Q ss_pred ---CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcC
Q psy11640 94 ---PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLK 170 (552)
Q Consensus 94 ---~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~ 170 (552)
...++|+|||++.+.....+.. ...++ ...++||+||+|-... .
T Consensus 176 ~~~~~~~~IlVtTpEkld~llr~~~----~~~~l--~~v~~vIiDEvH~l~d------~--------------------- 222 (1724)
T 4f92_B 176 KEEISATQIIVCTPEKWDIITRKGG----ERTYT--QLVRLIILDEIHLLHD------D--------------------- 222 (1724)
T ss_dssp CTTGGGCSEEEECHHHHHHHTTSST----THHHH--TTEEEEEETTGGGGGS------T---------------------
T ss_pred ccccCCCCEEEECHHHHHHHHcCCc----cchhh--cCcCEEEEecchhcCC------c---------------------
Confidence 2468999999997643222211 11234 6799999999874210 0
Q ss_pred CCCCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccc
Q psy11640 171 PDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLRED 249 (552)
Q Consensus 171 ~~~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d 249 (552)
| | +.+ |.- -+...+ ..... +...++|||||...
T Consensus 223 -----R-------G--------~~l---------------------E~~--l~rl~~-~~~~~~~~~riI~LSATl~N-- 256 (1724)
T 4f92_B 223 -----R-------G--------PVL---------------------EAL--VARAIR-NIEMTQEDVRLIGLSATLPN-- 256 (1724)
T ss_dssp -----T-------H--------HHH---------------------HHH--HHHHHH-HHHHHTCCCEEEEEECSCTT--
T ss_pred -----c-------H--------HHH---------------------HHH--HHHHHH-HHHhCCCCCcEEEEecccCC--
Confidence 0 0 000 110 000111 11112 24468999999742
Q ss_pred cchhhhhhhhcc------cccccCHHHHHHcCCCcceEEEEEEcCCCHH-HHHHHHhhhhhhhhhHHhcCchhHHHHHHH
Q psy11640 250 DKIADLNFLIGP------KLYEANWLELQKRGFIARVQCAEVWCPMSPE-FYREYLVCKTSKRLLLYVMNPNKYRATQYL 322 (552)
Q Consensus 250 ~~~~~L~~lig~------~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~-~~~~y~~~~~~~~~~~~~~~~~K~~~l~~L 322 (552)
..++..+++. ..+..++. |+......+...+. ....+ ..-...+...
T Consensus 257 --~~dvA~wL~~~~~~~~~~~~~~~R---------PvpL~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 310 (1724)
T 4f92_B 257 --YEDVATFLRVDPAKGLFYFDNSFR---------PVPLEQTYVGITEKKAIKRF---------------QIMNEIVYEK 310 (1724)
T ss_dssp --HHHHHHHTTCCHHHHEEECCGGGC---------SSCEEEECCEECCCCHHHHH---------------HHHHHHHHHH
T ss_pred --HHHHHHHhCCCCCCCeEEECCCCc---------cCccEEEEeccCCcchhhhh---------------HHHHHHHHHH
Confidence 2333333332 12222111 11111111111100 00000 0001122222
Q ss_pred HHHHhhcCCeEEEEeccHHHHHHHHHHc------------------------------------------CCceEeCCCC
Q psy11640 323 IAYHERRGDKTIVFSDNVFALKHYAVKM------------------------------------------NKPYIYGPTS 360 (552)
Q Consensus 323 l~~~~~~g~kvIVF~~~~~~~~~l~~~L------------------------------------------~~~~i~G~~~ 360 (552)
+..+ ..++++||||+++..++.++..| |+.+.||+++
T Consensus 311 v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 311 IMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 2222 24678999999876555544432 3567899999
Q ss_pred HHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE----ecc-----CCCChhhHHHHhhhccccCCCCCCCcee
Q psy11640 361 QSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ----ISS-----HGGSRRQEAQRLGRILRAKKGAIAEEYN 431 (552)
Q Consensus 361 ~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~----~~~-----~~~s~~q~~Qr~GRi~R~~~~k~~~~~~ 431 (552)
+.+|..+.+.|++ |.++|||||++++.|||+|+.++||. +++ .+-+...|.||+||+||++.+..
T Consensus 390 ~~~R~~vE~~F~~-G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~----- 463 (1724)
T 4f92_B 390 RVDRTLVEDLFAD-KHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTK----- 463 (1724)
T ss_dssp THHHHHHHHHHHT-TCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSC-----
T ss_pred HHHHHHHHHHHHC-CCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCc-----
Confidence 9999999999996 89999999999999999998888874 442 13478899999999999987653
Q ss_pred EEEEEEecCCchh
Q psy11640 432 AFFYTLVSQDTME 444 (552)
Q Consensus 432 v~vy~lvs~~t~e 444 (552)
..++-+.+.+..+
T Consensus 464 G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 464 GEGILITSHGELQ 476 (1724)
T ss_dssp EEEEEEEESTTCC
T ss_pred cEEEEEecchhHH
Confidence 4555566665443
No 49
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.91 E-value=9.5e-24 Score=210.22 Aligned_cols=171 Identities=25% Similarity=0.300 Sum_probs=125.8
Q ss_pred CCcceEEEEEEcCCCHHHHHHHHhhhhh-------------h--------hhhHH-------------hcCchhHHHHHH
Q psy11640 276 FIARVQCAEVWCPMSPEFYREYLVCKTS-------------K--------RLLLY-------------VMNPNKYRATQY 321 (552)
Q Consensus 276 ~l~~~~~~~v~~~l~~~~~~~y~~~~~~-------------~--------~~~~~-------------~~~~~K~~~l~~ 321 (552)
.|++.....++|+|++++...|...... . +.... ...+.|+..|.+
T Consensus 24 ~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~~~~~~s~K~~~L~~ 103 (271)
T 1z5z_A 24 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 103 (271)
T ss_dssp ----CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred hCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCccccccCHHHHHHHH
Confidence 4667777889999999887666442110 0 01111 124579999999
Q ss_pred HHHHHhhcCCeEEEEeccHHHHHHHHHHc------CCceEeCCCCHHHHHHHHHhhccCCCee-EEEEeCccccccCCCC
Q psy11640 322 LIAYHERRGDKTIVFSDNVFALKHYAVKM------NKPYIYGPTSQSERIQILQNFKLNPKVN-TIFVSKVADTSFDLPE 394 (552)
Q Consensus 322 Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L------~~~~i~G~~~~~eR~~il~~F~~~g~~~-vLv~T~v~~~GlDlp~ 394 (552)
++......++|+||||+++.+++.|...| .+..+||++++.+|++++++|+++++++ +|++|+++++|||+|.
T Consensus 104 ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~ 183 (271)
T 1z5z_A 104 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 183 (271)
T ss_dssp HHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTT
T ss_pred HHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCccc
Confidence 99887778999999999999999998877 3567999999999999999999744788 5667899999999999
Q ss_pred CCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHH
Q psy11640 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQ 452 (552)
Q Consensus 395 a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~ 452 (552)
|++||++| +||||..+.||+||++|.||.+ +|+||+|++.+|+|+.+.....
T Consensus 184 a~~VI~~d-~~wnp~~~~Q~~gR~~R~Gq~~-----~v~v~~li~~~TiEe~i~~~~~ 235 (271)
T 1z5z_A 184 ANRVIHFD-RWWNPAVEDQATDRVYRIGQTR-----NVIVHKLISVGTLEEKIDQLLA 235 (271)
T ss_dssp CSEEEECS-CCSCTTTC-------------------CCEEEEEEETTSHHHHHHHHHH
T ss_pred CCEEEEEC-CCCChhHHHHHHHhccccCCCC-----ceEEEEEeeCCCHHHHHHHHHH
Confidence 99999999 6999999999999999999976 5999999999999999887543
No 50
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.91 E-value=7.8e-24 Score=235.01 Aligned_cols=263 Identities=11% Similarity=0.074 Sum_probs=173.7
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC----CCCcEEEEcc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP----MGCGILVTTY 104 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~----~~~~IvItTy 104 (552)
--++++|||+|||+.++..+... +..+|++|+++|+.|+.+.+.... ..+..++|+..... ...+++++|.
T Consensus 157 ~vlv~apTGSGKT~~al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~g----~~v~lltG~~~~iv~TpGr~~~il~~T~ 231 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYHAIQKYFSA-KSGVYCGPLKLLAHEIFEKSNAAG----VPCDLVTGEERVTVQPNGKQASHVSCTV 231 (677)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS-SSEEEEESSHHHHHHHHHHHHHTT----CCEEEECSSCEECCSTTCCCCSEEEEEG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHHHHHhcC----CcEEEEECCeeEEecCCCcccceeEecH
Confidence 34778999999999777766554 456999999999999999998752 46888888764321 2367888888
Q ss_pred cccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCC
Q psy11640 105 SMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNG 184 (552)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g 184 (552)
+++.. ...++++|+||+|.... ..|
T Consensus 232 e~~~l----------------~~~v~lvVIDEaH~l~d-------------~~~-------------------------- 256 (677)
T 3rc3_A 232 EMCSV----------------TTPYEVAVIDEIQMIRD-------------PAR-------------------------- 256 (677)
T ss_dssp GGCCS----------------SSCEEEEEECSGGGGGC-------------TTT--------------------------
T ss_pred hHhhh----------------cccCCEEEEecceecCC-------------ccc--------------------------
Confidence 76632 25789999999886321 000
Q ss_pred ccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh--ccceeeecceecccccchhhhhhhhccc
Q psy11640 185 HIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ--SHCKLGLTATLLREDDKIADLNFLIGPK 262 (552)
Q Consensus 185 ~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~--~~~~lgLTATp~r~d~~~~~L~~lig~~ 262 (552)
...+..++..+. ....+++|||.. ....+....+..
T Consensus 257 --------------------------------------g~~~~~~l~~l~~~~i~il~~SAT~~----~i~~l~~~~~~~ 294 (677)
T 3rc3_A 257 --------------------------------------GWAWTRALLGLCAEEVHLCGEPAAID----LVMELMYTTGEE 294 (677)
T ss_dssp --------------------------------------HHHHHHHHHHCCEEEEEEEECGGGHH----HHHHHHHHHTCC
T ss_pred --------------------------------------hHHHHHHHHccCccceEEEeccchHH----HHHHHHHhcCCc
Confidence 011222333333 345678888831 122222211111
Q ss_pred ccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHH
Q psy11640 263 LYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFA 342 (552)
Q Consensus 263 ~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~ 342 (552)
+ .+.. +....+.. + . ...+. .+. ......||||.++..
T Consensus 295 ~-----------------~v~~-~~r~~~l~---~-----~---------~~~l~----~l~---~~~~g~iIf~~s~~~ 332 (677)
T 3rc3_A 295 V-----------------EVRD-YKRLTPIS---V-----L---------DHALE----SLD---NLRPGDCIVCFSKND 332 (677)
T ss_dssp E-----------------EEEE-CCCSSCEE---E-----C---------SSCCC----SGG---GCCTTEEEECSSHHH
T ss_pred e-----------------EEEE-eeecchHH---H-----H---------HHHHH----HHH---hcCCCCEEEEcCHHH
Confidence 1 0000 00000000 0 0 00000 000 112344788999999
Q ss_pred HHHHHHHc-----CCceEeCCCCHHHHHHHHHhhcc-CCCeeEEEEeCccccccCCCCCCEEEEeccC------------
Q psy11640 343 LKHYAVKM-----NKPYIYGPTSQSERIQILQNFKL-NPKVNTIFVSKVADTSFDLPEANVLIQISSH------------ 404 (552)
Q Consensus 343 ~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~-~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~------------ 404 (552)
++.++..| ++..+||++++.+|..+++.|+. +|.++|||+|+++++|||+ .+++||+++..
T Consensus 333 ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~ 411 (677)
T 3rc3_A 333 IYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGEREL 411 (677)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------
T ss_pred HHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCcccc
Confidence 99999888 57889999999999999999994 2679999999999999999 89999998731
Q ss_pred -CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 405 -GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 405 -~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
|.|..+|.||+||+||.+.... ...+|.+...
T Consensus 412 ~p~s~~~~~QR~GRAGR~g~~g~----~G~v~~l~~~ 444 (677)
T 3rc3_A 412 EPITTSQALQIAGRAGRFSSRFK----EGEVTTMNHE 444 (677)
T ss_dssp CBCCHHHHHHHHTTBTCTTSSCS----SEEEEESSTT
T ss_pred ccCCHHHHHHHhcCCCCCCCCCC----CEEEEEEecc
Confidence 6689999999999999986421 3567766554
No 51
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.90 E-value=6.3e-24 Score=248.03 Aligned_cols=245 Identities=13% Similarity=0.144 Sum_probs=154.0
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHhhhCCCCC----cEEEEecCcccC-------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKLWSTADDS----MICRFTSEAKDK------- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~----~I~~~~g~~~~~------- 93 (552)
+-.++++|||+|||+.++.++.. .+.++|||+||++|+.|+.+++++++..... .+..++|+....
T Consensus 72 ~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~ 151 (1054)
T 1gku_B 72 ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 151 (1054)
T ss_dssp CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHh
Confidence 46788899999999855555543 3578999999999999999999998854344 688888865321
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCC
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPD 172 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~ 172 (552)
....+|+|+|++.|.... ..| ..+++||+||||+... ++
T Consensus 152 ~l~~~~IlV~TP~~L~~~l----------~~L--~~l~~lViDEah~~l~---------------~~------------- 191 (1054)
T 1gku_B 152 NLRNFKIVITTTQFLSKHY----------REL--GHFDFIFVDDVDAILK---------------AS------------- 191 (1054)
T ss_dssp SGGGCSEEEEEHHHHHHCS----------TTS--CCCSEEEESCHHHHHT---------------ST-------------
T ss_pred hccCCCEEEEcHHHHHHHH----------HHh--ccCCEEEEeChhhhhh---------------cc-------------
Confidence 123799999999885421 113 4789999999987332 00
Q ss_pred CCCCCccccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh------------hccceee
Q psy11640 173 HKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV------------QSHCKLG 240 (552)
Q Consensus 173 ~~~r~~~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~------------~~~~~lg 240 (552)
..++.++..+ .....++
T Consensus 192 ---------------------------------------------------~~~~~i~~~lgf~~~~~~~~~~~~~q~~l 220 (1054)
T 1gku_B 192 ---------------------------------------------------KNVDKLLHLLGFHYDLKTKSWVGEARGCL 220 (1054)
T ss_dssp ---------------------------------------------------HHHHHHHHHTTEEEETTTTEEEECCSSEE
T ss_pred ---------------------------------------------------ccHHHHHHHhCcchhhhhhhcccCCceEE
Confidence 0011111111 2344678
Q ss_pred ecceecccccchhhhhhhhcccccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHH
Q psy11640 241 LTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQ 320 (552)
Q Consensus 241 LTATp~r~d~~~~~L~~lig~~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~ 320 (552)
+|||+.........+..- +...... .............. ...|...+.
T Consensus 221 ~SAT~t~~~~~~~~~~~~--~~~i~v~------~~~~~~~~i~~~~~------------------------~~~k~~~L~ 268 (1054)
T 1gku_B 221 MVSTATAKKGKKAELFRQ--LLNFDIG------SSRITVRNVEDVAV------------------------NDESISTLS 268 (1054)
T ss_dssp EECCCCSCCCTTHHHHHH--HHCCCCS------CCEECCCCEEEEEE------------------------SCCCTTTTH
T ss_pred EEecCCCchhHHHHHhhc--ceEEEcc------CcccCcCCceEEEe------------------------chhHHHHHH
Confidence 888876542111111100 0000000 00000000111111 123344444
Q ss_pred HHHHHHhhcCCeEEEEeccHHHHHHHHHHcC----CceEeCCCCHHHHHHHHHhhccCCCeeEEEE----eCccccccCC
Q psy11640 321 YLIAYHERRGDKTIVFSDNVFALKHYAVKMN----KPYIYGPTSQSERIQILQNFKLNPKVNTIFV----SKVADTSFDL 392 (552)
Q Consensus 321 ~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L~----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~----T~v~~~GlDl 392 (552)
.++.. .+.++||||+++..++.++..|. +..+||++ .++++.|++ |+++|||+ |+++++|||+
T Consensus 269 ~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~-G~~~VLVaTas~Tdv~~rGIDi 339 (1054)
T 1gku_B 269 SILEK---LGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVE-GEIDHLIGTAHYYGTLVRGLDL 339 (1054)
T ss_dssp HHHTT---SCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHH-TSCSEEEEECC------CCSCC
T ss_pred HHHhh---cCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHc-CCCcEEEEecCCCCeeEecccc
Confidence 55543 36789999999999999999883 56789987 478999996 89999999 8999999999
Q ss_pred CCC-CEEEEeccCC
Q psy11640 393 PEA-NVLIQISSHG 405 (552)
Q Consensus 393 p~a-~~VI~~~~~~ 405 (552)
|++ ++||+++. |
T Consensus 340 p~VI~~VI~~~~-P 352 (1054)
T 1gku_B 340 PERIRFAVFVGC-P 352 (1054)
T ss_dssp TTTCCEEEEESC-C
T ss_pred CCcccEEEEeCC-C
Confidence 995 99999994 6
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.90 E-value=3e-23 Score=250.66 Aligned_cols=302 Identities=15% Similarity=0.123 Sum_probs=185.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh-----cCCcEEEEecCchhHHHHHHHHHh-hhCCCCCcEEEEecCcccC---CCCCc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-----VRKRALVLCNSGVSVEQWKHQFKL-WSTADDSMICRFTSEAKDK---PMGCG 98 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~-~~~~~~~~I~~~~g~~~~~---~~~~~ 98 (552)
+--++++|||+|||++|..++.. .+.++|+++|+++|+.|..+++.+ |.......|+.++|+.... ...++
T Consensus 943 ~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~ 1022 (1724)
T 4f92_B 943 DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGN 1022 (1724)
T ss_dssp SCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCS
T ss_pred CcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCC
Confidence 34677799999999998777653 256899999999999999999875 4333346788899876432 14579
Q ss_pred EEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCc
Q psy11640 99 ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPL 178 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~ 178 (552)
|+|+|++.+.....+. .. ...+ .+.+++|+||+|.... ..|
T Consensus 1023 IiV~TPEkld~llr~~-~~---~~~l--~~v~lvViDE~H~l~d--------------~rg------------------- 1063 (1724)
T 4f92_B 1023 IIISTPEKWDILSRRW-KQ---RKNV--QNINLFVVDEVHLIGG--------------ENG------------------- 1063 (1724)
T ss_dssp EEEECHHHHHHHHTTT-TT---CHHH--HSCSEEEECCGGGGGS--------------TTH-------------------
T ss_pred EEEECHHHHHHHHhCc-cc---cccc--ceeeEEEeechhhcCC--------------CCC-------------------
Confidence 9999999763321111 10 1233 5789999999885321 000
Q ss_pred cccCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhh-ccceeeecceecccccchhhhhh
Q psy11640 179 WVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQ-SHCKLGLTATLLREDDKIADLNF 257 (552)
Q Consensus 179 ~~~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~-~~~~lgLTATp~r~d~~~~~L~~ 257 (552)
+.+ |.- -...+.+....+ ....++||||... ..++..
T Consensus 1064 --------------~~l---------------------e~i---l~rl~~i~~~~~~~~riI~lSATl~N----~~dla~ 1101 (1724)
T 4f92_B 1064 --------------PVL---------------------EVI---CSRMRYISSQIERPIRIVALSSSLSN----AKDVAH 1101 (1724)
T ss_dssp --------------HHH---------------------HHH---HHHHHHHHHTTSSCCEEEEEESCBTT----HHHHHH
T ss_pred --------------ccH---------------------HHH---HHHHHHHHhhcCCCceEEEEeCCCCC----HHHHHH
Confidence 000 000 000011112222 3467999999743 234444
Q ss_pred hhcccc-----cccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCe
Q psy11640 258 LIGPKL-----YEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDK 332 (552)
Q Consensus 258 lig~~~-----~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~k 332 (552)
++|... +..++. -.+........+..... . ....+ ...+...+..+ ..+.+
T Consensus 1102 WL~~~~~~~~~~~~~~R-------PvpL~~~i~~~~~~~~~-~-----------~~~~~----~~~~~~~i~~~-~~~~~ 1157 (1724)
T 4f92_B 1102 WLGCSATSTFNFHPNVR-------PVPLELHIQGFNISHTQ-T-----------RLLSM----AKPVYHAITKH-SPKKP 1157 (1724)
T ss_dssp HHTCCSTTEEECCGGGC-------SSCEEEEEEEECCCSHH-H-----------HHHTT----HHHHHHHHHHH-CSSSC
T ss_pred HhCCCCCCeEEeCCCCC-------CCCeEEEEEeccCCCch-h-----------hhhhh----cchHHHHHHHh-cCCCC
Confidence 443221 111111 01111111111111100 0 00001 11122233333 36779
Q ss_pred EEEEeccHHHHHHHHHHc---------------------------------------CCceEeCCCCHHHHHHHHHhhcc
Q psy11640 333 TIVFSDNVFALKHYAVKM---------------------------------------NKPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 333 vIVF~~~~~~~~~l~~~L---------------------------------------~~~~i~G~~~~~eR~~il~~F~~ 373 (552)
+||||.++..++.++..| |+.++||++++.+|..+.+.|++
T Consensus 1158 ~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~ 1237 (1724)
T 4f92_B 1158 VIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSS 1237 (1724)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHH
T ss_pred eeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHC
Confidence 999999988777655432 46789999999999999999996
Q ss_pred CCCeeEEEEeCccccccCCCCCCEEEE----ecc-----CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 374 NPKVNTIFVSKVADTSFDLPEANVLIQ----ISS-----HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 374 ~g~~~vLv~T~v~~~GlDlp~a~~VI~----~~~-----~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
|.++|||||++++.|||+|+..+||. +++ .+.+...|.||+||+||+|.+.. ..++.++..
T Consensus 1238 -G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~-----G~avll~~~ 1307 (1724)
T 4f92_B 1238 -GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE-----GRCVIMCQG 1307 (1724)
T ss_dssp -TSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC-----EEEEEEEEG
T ss_pred -CCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc-----eEEEEEecc
Confidence 89999999999999999998777763 321 13578899999999999987543 445555554
No 53
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.90 E-value=1.1e-23 Score=234.50 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=78.4
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE---
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ--- 400 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~--- 400 (552)
.+.++||||+++..++.++..| .+..+||+ +|.++++.|++ |+++|||+|+++++|||+| +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~-g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN-GDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT-CCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC-CCceEEEECchhhcceeeC-CcEEEECCC
Confidence 5789999999999999999998 45678994 89999999995 8999999999999999999 999997
Q ss_pred -----------------eccCCCChhhHHHHhhhccccC
Q psy11640 401 -----------------ISSHGGSRRQEAQRLGRILRAK 422 (552)
Q Consensus 401 -----------------~~~~~~s~~q~~Qr~GRi~R~~ 422 (552)
++ .|.++.+|+||+||+||.+
T Consensus 483 ~~~p~vi~da~~r~~ll~d-~P~s~~~y~Qr~GRaGR~~ 520 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVP-SAITSASAAQRRGRVGRNP 520 (673)
T ss_dssp ECCEEEECSTTCEEEECCS-EECCHHHHHHHHTTSSCCS
T ss_pred cccceeeecccccceeccc-CCCCHHHHHHHhhccCCCC
Confidence 34 4788999999999999983
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.90 E-value=4.4e-23 Score=228.93 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=93.2
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+.++..++......+.++||||.++..++.|+..| .+..+||++.+.+|..+.+.|+. + .|+|||+++
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~-g--~VlIATdmA 490 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK-G--AVTIATNMA 490 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST-T--CEEEEETTS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC-C--eEEEeCCcc
Confidence 356888877777543346889999999999999999999 35679999998888877777774 4 699999999
Q ss_pred ccccCCC--------CCCEEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 387 DTSFDLP--------EANVLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 387 ~~GlDlp--------~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
++|+||+ +..+||.++ .|.|++.|.||+||+||.|..
T Consensus 491 gRG~DI~l~~~V~~~ggl~VIn~d-~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 491 GRGTDIKLGEGVKELGGLAVVGTE-RHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESS-CCSSHHHHHHHHTTSSGGGCC
T ss_pred ccCcCccccchhhhcCCcEEEEec-CCCCHHHHHhhcCccccCCCC
Confidence 9999999 788999999 699999999999999998873
No 55
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.90 E-value=1.6e-23 Score=230.32 Aligned_cols=255 Identities=16% Similarity=0.091 Sum_probs=168.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEcccccc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMIS 108 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l~ 108 (552)
-.++++|||+|||.++...+...+.++||++|+++|+.|+.+.+.+.++. .+....|... .....+|+|+|++.|.
T Consensus 234 ~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~---~vg~~vG~~~-~~~~~~IlV~TPGrLl 309 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGI---DPNIRTGVRT-ITTGAPVTYSTYGKFL 309 (666)
T ss_dssp EEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSCE-ECCCCSEEEEEHHHHH
T ss_pred eEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCC---CeeEEECcEe-ccCCCCEEEECcHHHH
Confidence 35678999999999988888777779999999999999999999887753 3555566543 2245789999999874
Q ss_pred cccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCCcccc
Q psy11640 109 HTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFL 188 (552)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~~ 188 (552)
... .+...++++||+||+|....
T Consensus 310 ~~~-----------~l~l~~l~~lVlDEAH~l~~---------------------------------------------- 332 (666)
T 3o8b_A 310 ADG-----------GCSGGAYDIIICDECHSTDS---------------------------------------------- 332 (666)
T ss_dssp HTT-----------SCCTTSCSEEEETTTTCCSH----------------------------------------------
T ss_pred hCC-----------CcccCcccEEEEccchhcCc----------------------------------------------
Confidence 321 12236799999998754210
Q ss_pred ccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhcc---ceeeecceecccccchhhhhhhhcccccc
Q psy11640 189 ESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH---CKLGLTATLLREDDKIADLNFLIGPKLYE 265 (552)
Q Consensus 189 ~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~---~~lgLTATp~r~d~~~~~L~~lig~~~~~ 265 (552)
. ....+..++..++.. ..+++|||+...-. ...+.
T Consensus 333 ----------------------------~----~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~-------~~~p~--- 370 (666)
T 3o8b_A 333 ----------------------------T----TILGIGTVLDQAETAGARLVVLATATPPGSVT-------VPHPN--- 370 (666)
T ss_dssp ----------------------------H----HHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC-------CCCTT---
T ss_pred ----------------------------c----HHHHHHHHHHhhhhcCCceEEEECCCCCcccc-------cCCcc---
Confidence 0 001122234434322 25777999864200 00000
Q ss_pred cCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHH
Q psy11640 266 ANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKH 345 (552)
Q Consensus 266 ~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~ 345 (552)
...+....... ..+... ... +. ...+.++||||+++..++.
T Consensus 371 ----------------i~~v~~~~~~~--i~~~~~------------~~~-------l~--~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 371 ----------------IEEVALSNTGE--IPFYGK------------AIP-------IE--AIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp ----------------EEEEECBSCSS--EEETTE------------EEC-------GG--GSSSSEEEEECSCHHHHHH
T ss_pred ----------------eEEEeecccch--hHHHHh------------hhh-------hh--hccCCcEEEEeCCHHHHHH
Confidence 11111111000 000000 000 00 1257899999999999999
Q ss_pred HHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE----------ecc-------
Q psy11640 346 YAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ----------ISS------- 403 (552)
Q Consensus 346 l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~----------~~~------- 403 (552)
+++.| .+..+||++++.+ |.. +..+|||+|+++++|||+| +++||. +|+
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~-~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPT-IGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCS-SSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHh-CCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 99998 3567999999874 454 4669999999999999998 999994 441
Q ss_pred ---CCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCch
Q psy11640 404 ---HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443 (552)
Q Consensus 404 ---~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~ 443 (552)
.|.+..+|+||+||+|| +.. .. |.|++.+..
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~-------G~-i~lvt~~e~ 516 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRR-------GI-YRFVTPGER 516 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSC-------EE-EEESCCCCB
T ss_pred cccCcCCHHHHHHHhccCCC-CCC-------CE-EEEEecchh
Confidence 26788999999999999 441 34 788877543
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.90 E-value=6.1e-23 Score=232.25 Aligned_cols=285 Identities=13% Similarity=0.100 Sum_probs=180.0
Q ss_pred ccCeecCCCCchhHHHHHHHHh----c--CCcEEEEecCchhHHHHHHHHHhhhCCCCC-cEEEEecCcccCCCCCcEEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT----V--RKRALVLCNSGVSVEQWKHQFKLWSTADDS-MICRFTSEAKDKPMGCGILV 101 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~----~--~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~-~I~~~~g~~~~~~~~~~IvI 101 (552)
-.++++|||+|||.+.-.++.. . +..++|++|+++|+.|+.+.+...++.... .++.-...........+|++
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v 190 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKY 190 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEE
Confidence 3678899999999943222221 1 456999999999999999988776654322 23311111111124578999
Q ss_pred EcccccccccccchhHHHHHHHHhcCcccEEEEccCCc-ccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 102 TTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP-VAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 102 tTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~-~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
+|++++... ........++++||+||+|. ...
T Consensus 191 ~T~G~l~r~---------l~~~~~l~~~~~lIlDEah~R~ld-------------------------------------- 223 (773)
T 2xau_A 191 MTDGMLLRE---------AMEDHDLSRYSCIILDEAHERTLA-------------------------------------- 223 (773)
T ss_dssp EEHHHHHHH---------HHHSTTCTTEEEEEECSGGGCCHH--------------------------------------
T ss_pred ECHHHHHHH---------HhhCccccCCCEEEecCccccccc--------------------------------------
Confidence 999987431 11111236899999998873 110
Q ss_pred cCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccchhhhhhhhc
Q psy11640 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIG 260 (552)
Q Consensus 181 ~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~~~L~~lig 260 (552)
.|+ .....+.+....+....+++|||+.. ..+..+++
T Consensus 224 ------------------~d~--------------------~~~~l~~l~~~~~~~~iIl~SAT~~~-----~~l~~~~~ 260 (773)
T 2xau_A 224 ------------------TDI--------------------LMGLLKQVVKRRPDLKIIIMSATLDA-----EKFQRYFN 260 (773)
T ss_dssp ------------------HHH--------------------HHHHHHHHHHHCTTCEEEEEESCSCC-----HHHHHHTT
T ss_pred ------------------hHH--------------------HHHHHHHHHHhCCCceEEEEeccccH-----HHHHHHhc
Confidence 000 01112223333345678999999831 22333333
Q ss_pred c-cccccCHHHHHHcCCCcceEEEEEEcCCCHHHHHHHHhhhhhhhhhHHhcCchhH-HHHHHHHHHHh-hcCCeEEEEe
Q psy11640 261 P-KLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKY-RATQYLIAYHE-RRGDKTIVFS 337 (552)
Q Consensus 261 ~-~~~~~~~~el~~~g~l~~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~K~-~~l~~Ll~~~~-~~g~kvIVF~ 337 (552)
. .++.. .|...++. ..+.+... ..+. .++..++..+. ..+.++|||+
T Consensus 261 ~~~vi~v-------~gr~~pv~--~~~~~~~~---------------------~~~~~~~l~~l~~~~~~~~~g~iLVF~ 310 (773)
T 2xau_A 261 DAPLLAV-------PGRTYPVE--LYYTPEFQ---------------------RDYLDSAIRTVLQIHATEEAGDILLFL 310 (773)
T ss_dssp SCCEEEC-------CCCCCCEE--EECCSSCC---------------------SCHHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred CCCcccc-------cCcccceE--EEEecCCc---------------------hhHHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 1 11111 12122221 11221110 1111 22333333332 2578999999
Q ss_pred ccHHHHHHHHHHcC----------------CceEeCCCCHHHHHHHHHhhc-----cCCCeeEEEEeCccccccCCCCCC
Q psy11640 338 DNVFALKHYAVKMN----------------KPYIYGPTSQSERIQILQNFK-----LNPKVNTIFVSKVADTSFDLPEAN 396 (552)
Q Consensus 338 ~~~~~~~~l~~~L~----------------~~~i~G~~~~~eR~~il~~F~-----~~g~~~vLv~T~v~~~GlDlp~a~ 396 (552)
+++..++.++..|. +..+||++++.+|.++++.|+ . |..+|||+|+++++|||+|+++
T Consensus 311 ~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~-g~~kVlVAT~iae~GidIp~v~ 389 (773)
T 2xau_A 311 TGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR-PGRKVVISTNIAETSLTIDGIV 389 (773)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS-CCEEEEEECTHHHHTCCCTTEE
T ss_pred CCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC-CceEEEEeCcHHHhCcCcCCeE
Confidence 99999988877652 467999999999999999998 6 7999999999999999999999
Q ss_pred EEEEecc-------C----------CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 397 VLIQISS-------H----------GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 397 ~VI~~~~-------~----------~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
+||.++. + |.|...|.||+||+||.++ ..+|.|++...
T Consensus 390 ~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~--------G~~~~l~~~~~ 444 (773)
T 2xau_A 390 YVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP--------GKCFRLYTEEA 444 (773)
T ss_dssp EEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS--------EEEEESSCHHH
T ss_pred EEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC--------CEEEEEecHHH
Confidence 9998541 1 6789999999999999844 44677776543
No 57
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=1.6e-22 Score=223.84 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=94.9
Q ss_pred cCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 311 MNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
....|+.++..++......+.++||||.++..++.|+..| | ...+||+..+.+|..+.+.|+. | .|+|||++
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~-G--~VtIATnm 498 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP-A--AVTIATNM 498 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST-T--CEEEEESC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC-C--eEEEeccc
Confidence 3456888887777654457889999999999999999999 3 5679999998999888899995 5 79999999
Q ss_pred cccccCCCCC-------------------------------------CEEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 386 ADTSFDLPEA-------------------------------------NVLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 386 ~~~GlDlp~a-------------------------------------~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
+|+|+||+.. .+||.++ .|.|++.|.||+||+||.|..
T Consensus 499 AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te-~pes~riy~qr~GRTGRqGd~ 573 (853)
T 2fsf_A 499 AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTE-RHESRRIDNQLRGRSGRQGDA 573 (853)
T ss_dssp CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESS-CCSSHHHHHHHHTTSSGGGCC
T ss_pred ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEcc-CCCCHHHHHhhccccccCCCC
Confidence 9999999974 5899999 699999999999999998873
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.86 E-value=7.5e-21 Score=212.04 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=94.6
Q ss_pred HhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 326 HERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 326 ~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
....+.++||||.++..++.|+..| .+.++||++++.+|.++++.|+. |+++|||+|+++++|+|+|++++||+
T Consensus 435 ~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~-g~~~VLvaT~~l~~GlDip~v~lVI~ 513 (664)
T 1c4o_A 435 RAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL-GHYDCLVGINLLREGLDIPEVSLVAI 513 (664)
T ss_dssp HHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT-TSCSEEEESCCCCTTCCCTTEEEEEE
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc-CCceEEEccChhhcCccCCCCCEEEE
Confidence 3347889999999999999999988 35678999999999999999995 89999999999999999999999999
Q ss_pred eccC-----CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCch
Q psy11640 401 ISSH-----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443 (552)
Q Consensus 401 ~~~~-----~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~ 443 (552)
++ . ++|...|+||+||+||.+.| .++.+++..+.
T Consensus 514 ~d-~d~~G~p~s~~~~iQr~GRagR~~~G--------~~i~~~~~~~~ 552 (664)
T 1c4o_A 514 LD-ADKEGFLRSERSLIQTIGRAARNARG--------EVWLYADRVSE 552 (664)
T ss_dssp TT-TTSCSGGGSHHHHHHHHGGGTTSTTC--------EEEEECSSCCH
T ss_pred eC-CcccCCCCCHHHHHHHHCccCcCCCC--------EEEEEEcCCCH
Confidence 98 4 78999999999999998653 25667776544
No 59
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.86 E-value=1.1e-20 Score=209.50 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=93.4
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+.++..++......+.++||||.++..++.|+..| | ...+||+..+.||..+.+.|+. | .|+|||+++
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~-G--~VtIATnmA 518 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR-G--GVTVATNMA 518 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST-T--CEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC-C--eEEEecchh
Confidence 346888877766554457889999999999999999999 3 5679999988888888889985 5 799999999
Q ss_pred ccccCCCCC----------------------------------------------------CEEEEeccCCCChhhHHHH
Q psy11640 387 DTSFDLPEA----------------------------------------------------NVLIQISSHGGSRRQEAQR 414 (552)
Q Consensus 387 ~~GlDlp~a----------------------------------------------------~~VI~~~~~~~s~~q~~Qr 414 (552)
|+|+||+.. .+||.++ .+.|++.|.||
T Consensus 519 gRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te-~pes~riy~qr 597 (922)
T 1nkt_A 519 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTE-RHESRRIDNQL 597 (922)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECS-CCSSHHHHHHH
T ss_pred hcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEecc-CCCCHHHHHHH
Confidence 999999975 4899999 69999999999
Q ss_pred hhhccccCCC
Q psy11640 415 LGRILRAKKG 424 (552)
Q Consensus 415 ~GRi~R~~~~ 424 (552)
+||+||.|..
T Consensus 598 ~GRTGRqGdp 607 (922)
T 1nkt_A 598 RGRSGRQGDP 607 (922)
T ss_dssp HHTSSGGGCC
T ss_pred hcccccCCCC
Confidence 9999998773
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=1.2e-19 Score=166.62 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=106.2
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+..|..++... .+.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |++++||+|+++
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vlv~T~~~ 95 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR-GEYRYLVATDVA 95 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEEECGGG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeEEEECChh
Confidence 356888888888765 6789999999999999999988 46789999999999999999996 899999999999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++|+|+|++++||+++ +|+|+..|+||+||++|.|+. ..+|.|++..
T Consensus 96 ~~Gld~~~~~~Vi~~~-~p~~~~~~~qr~GR~~R~g~~-------g~~~~~~~~~ 142 (163)
T 2hjv_A 96 ARGIDIENISLVINYD-LPLEKESYVHRTGRTGRAGNK-------GKAISFVTAF 142 (163)
T ss_dssp TTTCCCSCCSEEEESS-CCSSHHHHHHHTTTSSCTTCC-------EEEEEEECGG
T ss_pred hcCCchhcCCEEEEeC-CCCCHHHHHHhccccCcCCCC-------ceEEEEecHH
Confidence 9999999999999999 699999999999999999863 4567777654
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.82 E-value=5.2e-19 Score=197.08 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=94.5
Q ss_pred HhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccccccCCCCCCEEEE
Q psy11640 326 HERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQ 400 (552)
Q Consensus 326 ~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~GlDlp~a~~VI~ 400 (552)
....+.++||||.++..++.|+..| .+..+||++++.+|.++++.|+. |+++|||+|+++++|+|+|++++||+
T Consensus 441 ~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~-g~~~VLVaT~~l~~GlDip~v~lVi~ 519 (661)
T 2d7d_A 441 RIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL-GKYDVLVGINLLREGLDIPEVSLVAI 519 (661)
T ss_dssp HHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH-TSCSEEEESCCCSTTCCCTTEEEEEE
T ss_pred HHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc-CCeEEEEecchhhCCcccCCCCEEEE
Confidence 3346789999999999999999988 35678999999999999999996 89999999999999999999999999
Q ss_pred eccC-----CCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCch
Q psy11640 401 ISSH-----GGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443 (552)
Q Consensus 401 ~~~~-----~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~ 443 (552)
++ . +.|..+|+||+||+||.+.| .++.+++..+.
T Consensus 520 ~d-~d~~G~p~s~~~~iQr~GRagR~~~G--------~~i~~~~~~~~ 558 (661)
T 2d7d_A 520 LD-ADKEGFLRSERSLIQTIGRAARNAEG--------RVIMYADKITK 558 (661)
T ss_dssp TT-TTCCTTTTSHHHHHHHHHTTTTSTTC--------EEEEECSSCCH
T ss_pred eC-cccccCCCCHHHHHHHhCcccCCCCC--------EEEEEEeCCCH
Confidence 98 4 78999999999999998543 35667777544
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=4.2e-19 Score=193.07 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=91.5
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+.++..++......+.++||||.++..++.|+..| ....+||+..+.+|..+...|+. + .|+|||+++
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~-g--~VtVATdmA 532 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK-G--MVTIATNMA 532 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST-T--CEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC-C--eEEEEcchh
Confidence 346888877777654457889999999999999999998 34679999776677666677774 4 699999999
Q ss_pred ccccCCC--------CCCEEEEeccCCCChhhHHHHhhhccccCCC
Q psy11640 387 DTSFDLP--------EANVLIQISSHGGSRRQEAQRLGRILRAKKG 424 (552)
Q Consensus 387 ~~GlDlp--------~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~ 424 (552)
++|+||+ +..+||.++ .|.|++.|.||+||+||.|..
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte-~Pes~r~y~qriGRTGRqG~~ 577 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTE-RHESRRIDNQLRGRAGRQGDP 577 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESS-CCSSHHHHHHHHTTSSCSSCC
T ss_pred hCCcCccCCcchhhcCCCEEEecC-CCCCHHHHHHhhCccccCCCC
Confidence 9999998 667999999 699999999999999998874
No 63
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=1.7e-19 Score=167.31 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=105.5
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+..|..+++.. .+.++||||+++..++.++..| ++..+||++++.+|..+++.|++ |+++|||+|+++
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vLvaT~~~ 91 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRILVATNLF 91 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEEESSCC
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-CCCcEEEECCch
Confidence 456888888888866 6789999999999999999988 46789999999999999999995 899999999999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecC
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQ 440 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~ 440 (552)
++|+|+|++++||+++ +|+|+..|+||+||++|.|+. ..++.|++.
T Consensus 92 ~~Gldi~~~~~Vi~~d-~p~~~~~~~qr~GR~~R~g~~-------g~~~~~~~~ 137 (172)
T 1t5i_A 92 GRGMDIERVNIAFNYD-MPEDSDTYLHRVARAGRFGTK-------GLAITFVSD 137 (172)
T ss_dssp STTCCGGGCSEEEESS-CCSSHHHHHHHHHHHTGGGCC-------CEEEEEECS
T ss_pred hcCcchhhCCEEEEEC-CCCCHHHHHHHhcccccCCCC-------cEEEEEEcC
Confidence 9999999999999999 699999999999999999873 345666765
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.79 E-value=2.9e-19 Score=164.45 Aligned_cols=121 Identities=16% Similarity=0.281 Sum_probs=103.2
Q ss_pred Cch-hHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 312 NPN-KYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 312 ~~~-K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
... |+..|..+++.. .+.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |++++||+|++
T Consensus 13 ~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~ 89 (165)
T 1fuk_A 13 EEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRILISTDL 89 (165)
T ss_dssp SGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEEEEGG
T ss_pred cchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc-CCCEEEEEcCh
Confidence 344 888888888876 6789999999999999999988 36789999999999999999995 89999999999
Q ss_pred cccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCch
Q psy11640 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTM 443 (552)
Q Consensus 386 ~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~ 443 (552)
+++|+|+|++++||+++ +|+|+..|.||+||+||.++. ..+|.|++.+..
T Consensus 90 ~~~G~d~~~~~~Vi~~~-~p~~~~~~~qr~GR~gR~g~~-------g~~~~~~~~~~~ 139 (165)
T 1fuk_A 90 LARGIDVQQVSLVINYD-LPANKENYIHRIGRGGRFGRK-------GVAINFVTNEDV 139 (165)
T ss_dssp GTTTCCCCSCSEEEESS-CCSSGGGGGGSSCSCC------------CEEEEEEETTTH
T ss_pred hhcCCCcccCCEEEEeC-CCCCHHHHHHHhcccccCCCC-------ceEEEEEcchHH
Confidence 99999999999999999 699999999999999998863 346677776543
No 65
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=166.30 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=92.8
Q ss_pred cCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 311 MNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
..+.|+..|.+++... ..+.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |+++|||+|++
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLvaT~~ 105 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPILVATAV 105 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH-TSSSEEEEEC-
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc-CCCeEEEEcCh
Confidence 3456888888888764 25789999999999999999988 46789999999999999999996 89999999999
Q ss_pred cccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 386 ~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
+++|+|+|++++||+++ +|+|+..|+||+||++|.|+. ..++.|++...
T Consensus 106 ~~~Gldi~~~~~VI~~d-~p~s~~~~~Qr~GR~~R~g~~-------g~~~~~~~~~~ 154 (185)
T 2jgn_A 106 AARGLDISNVKHVINFD-LPSDIEEYVHRIGRTGRVGNL-------GLATSFFNERN 154 (185)
T ss_dssp -----CCCSBSEEEESS-CCSSHHHHHHHHTTBCCTTSC-------EEEEEEECGGG
T ss_pred hhcCCCcccCCEEEEeC-CCCCHHHHHHHccccCCCCCC-------cEEEEEEchhh
Confidence 99999999999999999 699999999999999999863 45677777643
No 66
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=164.12 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcccc
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADT 388 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~~ 388 (552)
.|+..|..++... .+.++||||+++..++.++..| ++..+||++++.+|..+++.|++ |++++||+|+++++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD-GKEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT-TSCSEEEECCSCCT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeEEEEecchhc
Confidence 3777887887755 6779999999999999999998 36789999999999999999995 89999999999999
Q ss_pred ccCCCCCCEEEEeccCC------CChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCc
Q psy11640 389 SFDLPEANVLIQISSHG------GSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDT 442 (552)
Q Consensus 389 GlDlp~a~~VI~~~~~~------~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t 442 (552)
|+|+|++++||+++ .| .+...|+||+||+||.|+ ...+|.|++.+.
T Consensus 97 Gid~~~~~~Vi~~d-~p~~~~~~~~~~~~~qr~GR~gR~g~-------~g~~~~~~~~~~ 148 (175)
T 2rb4_A 97 GIDVKQVTIVVNFD-LPVKQGEEPDYETYLHRIGRTGRFGK-------KGLAFNMIEVDE 148 (175)
T ss_dssp TTCCTTEEEEEESS-CCC--CCSCCHHHHHHHHCBC----C-------CEEEEEEECGGG
T ss_pred CCCcccCCEEEEeC-CCCCccccCCHHHHHHHhcccccCCC-------CceEEEEEccch
Confidence 99999999999999 57 888999999999999875 356788887754
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.79 E-value=1.2e-18 Score=167.16 Aligned_cols=120 Identities=20% Similarity=0.285 Sum_probs=105.9
Q ss_pred cCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 311 MNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 311 ~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
....|+.+|..++... .+.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |.++|||+|++
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vlvaT~~ 90 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ-GEVRVLVATDV 90 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS-SSCCEEEECTT
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC-CCCeEEEecCh
Confidence 3457889999998866 6889999999999999999988 46789999999999999999996 89999999999
Q ss_pred cccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 386 ~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+++|+|+|++++||+++ .|+|+..|+||+||+||.|+. ..+|.|++..
T Consensus 91 ~~~Gidi~~v~~Vi~~~-~p~~~~~~~qr~GR~gR~g~~-------g~~~~l~~~~ 138 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYR-LPDRAEAYQHRSGRTGRAGRG-------GRVVLLYGPR 138 (212)
T ss_dssp TTCSSSCCCBSEEEESS-CCSSHHHHHHHHTTBCCCC---------BEEEEEECGG
T ss_pred hhcCCCCccCcEEEECC-CCcCHHHHHHHhcccCCCCCC-------CeEEEEEchh
Confidence 99999999999999999 699999999999999999863 3466777664
No 68
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=164.40 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=99.9
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCcc
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVA 386 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~ 386 (552)
...|+..|.+++.. .+.++||||+++..++.++..| .+..+||++++.+|.++++.|++ |+++|||+|+++
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLvaT~~~ 114 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE-GKKDVLVATDVA 114 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH-TSCSEEEECHHH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCEEEEEcCch
Confidence 34677776666653 4679999999999999999988 46789999999999999999996 899999999999
Q ss_pred ccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 387 ~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++|+|+|++++||+++ +|+|+..|+||+||++|.|+. ..++.|++..
T Consensus 115 ~~Gldi~~v~~VI~~d-~p~~~~~~~qr~GR~gR~g~~-------g~~i~l~~~~ 161 (191)
T 2p6n_A 115 SKGLDFPAIQHVINYD-MPEEIENYVHRIGRTGCSGNT-------GIATTFINKA 161 (191)
T ss_dssp HTTCCCCCCSEEEESS-CCSSHHHHHHHHTTSCC---C-------CEEEEEECTT
T ss_pred hcCCCcccCCEEEEeC-CCCCHHHHHHHhCccccCCCC-------cEEEEEEcCc
Confidence 9999999999999999 699999999999999999873 3456677654
No 69
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.75 E-value=2.5e-18 Score=172.13 Aligned_cols=144 Identities=17% Similarity=0.300 Sum_probs=110.6
Q ss_pred hccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC---CCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP---MGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~---~~~~Iv 100 (552)
+..++++|||+|||+++++++.. ...++|||||+++|+.||.+++.+|+..+...+..+.++..... ...+|+
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 208 (282)
T 1rif_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV 208 (282)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEE
T ss_pred CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchhhhccCCcEE
Confidence 56789999999999999877653 23599999999999999999999998655556777666543321 468999
Q ss_pred EEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccc
Q psy11640 101 VTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV 180 (552)
Q Consensus 101 ItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~ 180 (552)
|+||+++..... ..+ .++++||+||||+
T Consensus 209 v~T~~~l~~~~~---------~~~--~~~~~vIiDEaH~----------------------------------------- 236 (282)
T 1rif_A 209 VGTWQTVVKQPK---------EWF--SQFGMMMNDECHL----------------------------------------- 236 (282)
T ss_dssp EECHHHHTTSCG---------GGG--GGEEEEEEETGGG-----------------------------------------
T ss_pred EEchHHHHhhHH---------HHH--hhCCEEEEECCcc-----------------------------------------
Confidence 999998865311 122 6789999996554
Q ss_pred cCCCccccccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhh-hccceeeecceecccccchhhhhhhh
Q psy11640 181 APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIV-QSHCKLGLTATLLREDDKIADLNFLI 259 (552)
Q Consensus 181 ~~~g~i~~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~-~~~~~lgLTATp~r~d~~~~~L~~li 259 (552)
+....++.++..+ ...++++|||||.+.+.....++.++
T Consensus 237 ----------------------------------------~~~~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~l~~l~ 276 (282)
T 1rif_A 237 ----------------------------------------ATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMF 276 (282)
T ss_dssp ----------------------------------------CCHHHHHHHTTTCTTCCEEEEECSSCCTTSTTHHHHHHHH
T ss_pred ----------------------------------------CCcccHHHHHHHhhcCCeEEEEeCCCCCcchHHHHHHHhc
Confidence 4444556666665 57889999999998888888888999
Q ss_pred cccc
Q psy11640 260 GPKL 263 (552)
Q Consensus 260 g~~~ 263 (552)
||..
T Consensus 277 g~i~ 280 (282)
T 1rif_A 277 GEIF 280 (282)
T ss_dssp CEEE
T ss_pred CCcc
Confidence 8864
No 70
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.59 E-value=1.5e-19 Score=167.28 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=103.8
Q ss_pred chhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeCccc
Q psy11640 313 PNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVAD 387 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v~~ 387 (552)
..|+..|..+++.. .+.++||||+++..++.++..| ++..+||++++.+|..+++.|++ |++++||+|++++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE-GRVNVLVATDVAA 91 (170)
Confidence 56788888888764 6789999999999999999988 46789999999999999999995 8999999999999
Q ss_pred cccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 388 ~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
+|+|+|++++||+++ +|+|+..|+||+||+||.|+. ..+|.+++..
T Consensus 92 ~Gid~~~~~~Vi~~~-~p~~~~~~~qr~GR~~R~g~~-------g~~~~~~~~~ 137 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFD-MPRSGDTYLHRIGRTARAGRK-------GTAISLVEAH 137 (170)
Confidence 999999999999999 699999999999999998874 3356566554
No 71
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=6.3e-18 Score=164.98 Aligned_cols=125 Identities=22% Similarity=0.355 Sum_probs=97.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCc-EEEEecCcccCCCCCcEEEEccccc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSM-ICRFTSEAKDKPMGCGILVTTYSMI 107 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~-I~~~~g~~~~~~~~~~IvItTy~~l 107 (552)
..++++|||+|||++++.++...+.++||+||+++|+.||.+++.+| + .. +..++|+.+. ..+|+|+||+.+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~-~---~~~v~~~~g~~~~---~~~i~v~T~~~l 182 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-G---EEYVGEFSGRIKE---LKPLTVSTYDSA 182 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGG-C---GGGEEEESSSCBC---CCSEEEEEHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC-C---CCeEEEEeCCCCC---cCCEEEEeHHHH
Confidence 48999999999999999999888999999999999999999999994 3 35 8888887654 478999999987
Q ss_pred ccccccchhHHHHHHHHhcCcccEEEEccCCcccccccccccCCCCCcccccchhhhhhhhcCCCCCCCCccccCCCccc
Q psy11640 108 SHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIF 187 (552)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~r~~~~~~~g~i~ 187 (552)
... ...+ ...|++||+||+|
T Consensus 183 ~~~----------~~~~-~~~~~llIiDEaH------------------------------------------------- 202 (237)
T 2fz4_A 183 YVN----------AEKL-GNRFMLLIFDEVH------------------------------------------------- 202 (237)
T ss_dssp HHT----------HHHH-TTTCSEEEEECSS-------------------------------------------------
T ss_pred Hhh----------HHHh-cccCCEEEEECCc-------------------------------------------------
Confidence 532 1222 2569999999554
Q ss_pred cccccchhhhhhHHHHHhhcCCCCCccccceeecchhHHHHHHHhhhccceeeecceecccccch
Q psy11640 188 LESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKI 252 (552)
Q Consensus 188 ~~~~~~~~~~~~d~~~~~~~~~~r~~~~~E~~~~~~~~~~~~l~~~~~~~~lgLTATp~r~d~~~ 252 (552)
..+...|+.++..++..++|+|||||.|+|+..
T Consensus 203 --------------------------------~l~~~~~~~i~~~~~~~~~l~LSATp~r~D~~~ 235 (237)
T 2fz4_A 203 --------------------------------HLPAESYVQIAQMSIAPFRLGLTATFEREDGRH 235 (237)
T ss_dssp --------------------------------CCCTTTHHHHHHTCCCSEEEEEEESCC------
T ss_pred --------------------------------cCCChHHHHHHHhccCCEEEEEecCCCCCCCCC
Confidence 445556677777788889999999999998764
No 72
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.73 E-value=1.6e-17 Score=167.44 Aligned_cols=121 Identities=19% Similarity=0.283 Sum_probs=104.1
Q ss_pred hcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC
Q psy11640 310 VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384 (552)
Q Consensus 310 ~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~ 384 (552)
+....|+.+|..++..+ .+.++||||+++..++.++..| .+..+||++++.+|..+++.|++ |.++|||+|+
T Consensus 10 ~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~-g~~~vLVaT~ 86 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ-GEVRVLVATD 86 (300)
T ss_dssp CCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH-TSCCEEEECS
T ss_pred CCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc-CCceEEEEec
Confidence 34567899999999876 5889999999999999999988 45689999999999999999996 8999999999
Q ss_pred ccccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCC
Q psy11640 385 VADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQD 441 (552)
Q Consensus 385 v~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~ 441 (552)
++++|+|+|++++||+++ .|+|+..|+||+||+||.|+. ..+|.|++..
T Consensus 87 va~~Gidi~~v~~VI~~d-~p~s~~~y~Qr~GRagR~g~~-------G~~i~l~~~~ 135 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYR-MPDRAEAYQHRSGRTGRAGRG-------GRVVLLYGPR 135 (300)
T ss_dssp TTTCSTTCCCCSEEEESS-CCSSTTHHHHHHTCCC------------CEEEEEECSS
T ss_pred hhhcCccccceeEEEEcC-CCCCHHHHHHHccCcCcCCCC-------ceEEEEeChH
Confidence 999999999999999999 699999999999999999863 3466777764
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.60 E-value=3.3e-14 Score=155.11 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=60.2
Q ss_pred hcCCeEEEEeccHHHHHHHHHHcC-Cc-eEeCCCCHHHHHHHHHhhccCCCeeEEE--EeCccccccCCCC----CCEEE
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKMN-KP-YIYGPTSQSERIQILQNFKLNPKVNTIF--VSKVADTSFDLPE----ANVLI 399 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L~-~~-~i~G~~~~~eR~~il~~F~~~g~~~vLv--~T~v~~~GlDlp~----a~~VI 399 (552)
..++++|||+.+...++.+...+. .+ +++|.. .+|.++++.|+. +. .||+ +|....||||+|+ +++||
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~--~~~~~~l~~f~~-~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSGIPVIEENKK--TRHEEVLELMKT-GK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTTSCEEESTTT--CCHHHHHHHHHT-SC-CEEEEEC---------------CEEEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhccCceEecCCC--CcHHHHHHHHhc-CC-eEEEEEecCceecceecCCCcccccEEE
Confidence 467799999999999999998884 33 445554 478999999996 43 5666 6799999999998 78899
Q ss_pred EeccCCCCh-----------------------------hhHHHHhhhccccCCCC
Q psy11640 400 QISSHGGSR-----------------------------RQEAQRLGRILRAKKGA 425 (552)
Q Consensus 400 ~~~~~~~s~-----------------------------~q~~Qr~GRi~R~~~~k 425 (552)
++.-|..++ ....|.+||+.|...+.
T Consensus 458 i~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~ 512 (540)
T 2vl7_A 458 LAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDY 512 (540)
T ss_dssp EESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 976333333 23469999999976654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.53 E-value=3.6e-13 Score=149.33 Aligned_cols=107 Identities=11% Similarity=0.027 Sum_probs=75.6
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----CCCCcEEEEc
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----PMGCGILVTT 103 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----~~~~~IvItT 103 (552)
++.|+||+|||+++..++. ..+..++||+||++|+.|..+.+..++..-...++++.|+.... ...++|+++|
T Consensus 96 IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGT 175 (997)
T 2ipc_A 96 IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVT 175 (997)
T ss_dssp EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEE
T ss_pred eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEEC
Confidence 8889999999999877663 34668999999999999988888776655456788888765321 1358999999
Q ss_pred ccccccccccchhHHHHH----HHHhcC---cccEEEEccCCcccc
Q psy11640 104 YSMISHTQKRSWEADQTM----QWLQNQ---EWGIMLLDDGVPVAA 142 (552)
Q Consensus 104 y~~l~~~~~~~~~~~~~~----~~l~~~---~~~liIvDE~h~~~~ 142 (552)
++.|.... .++.+ +.+... .+.++|+||+|....
T Consensus 176 pgrlgfDy-----Lrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 176 NSELGFDY-----LRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HHHHHHHH-----HHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred chhhhhHH-----HHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 99773110 00000 012224 789999999987553
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.52 E-value=8.4e-15 Score=139.58 Aligned_cols=110 Identities=16% Similarity=0.226 Sum_probs=74.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhc---------CCcEEEEecCchhHHH-HHHHHHhhhCCCCCcEEEEecCcccCC---
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV---------RKRALVLCNSGVSVEQ-WKHQFKLWSTADDSMICRFTSEAKDKP--- 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~---------~~~~LIl~Pt~~Lv~Q-w~~e~~~~~~~~~~~I~~~~g~~~~~~--- 94 (552)
+..++++|||+|||++++.++... ..++||+||+++|+.| |.+++..|... ...+..+.|+.....
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~ 127 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFP 127 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHH
Confidence 568889999999999998877532 5789999999999999 99999999863 456777777653321
Q ss_pred ---CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 95 ---MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 95 ---~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
...+|+|+||+.+.......... ....+....+++||+||||+.
T Consensus 128 ~~~~~~~i~v~T~~~l~~~~~~~~~~--~~~~~~~~~~~~iIiDEah~~ 174 (216)
T 3b6e_A 128 EVVKSCDIIISTAQILENSLLNLENG--EDAGVQLSDFSLIIIDECHHT 174 (216)
T ss_dssp HHHHHCSEEEEEHHHHHHHHHC---------CCCGGGCSEEEETTC---
T ss_pred hhccCCCEEEECHHHHHHHHhccCcc--cccccchhcccEEEEECchhh
Confidence 24789999999885421111000 000022367899999999874
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.49 E-value=5e-14 Score=136.74 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=76.3
Q ss_pred hccCeecCCCCchhHHHHHHHHh----------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---- 93 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.++.......+..++|+....
T Consensus 63 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 142 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 142 (236)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHH
Confidence 45788899999999998765542 2567999999999999999999998865456778887765321
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
....+|+|+|++.+.....+. ..+...+++++|+||||+
T Consensus 143 ~~~~~~iiv~Tp~~l~~~l~~~-------~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 143 RINNINILVCTPGRLLQHMDET-------VSFHATDLQMLVLDEADR 182 (236)
T ss_dssp HHTTCSEEEECHHHHHHHHHHC-------SSCCCTTCCEEEETTHHH
T ss_pred hCCCCCEEEECHHHHHHHHHhc-------CCcccccccEEEEeChHH
Confidence 146799999999884321000 012235789999998876
No 77
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.49 E-value=3.2e-14 Score=136.52 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=77.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC-------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK------- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~------- 93 (552)
+..++++|||+|||++++.++... ..++|||||+++|+.||.+++++|... +...+..+.|+....
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 131 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 131 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh
Confidence 457888999999999988877643 348999999999999999999998754 256788888765321
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
....+|+|+|++.+...... ..+...+++++|+||||+.
T Consensus 132 ~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 132 KNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HSCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEESHHHH
T ss_pred cCCCCEEEeCHHHHHHHHHh--------CCCCcccCCEEEEcCHHHH
Confidence 12468999999987532111 1122367899999988763
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.48 E-value=3.8e-14 Score=134.39 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=75.4
Q ss_pred hccCeecCCCCchhHHHHHHHHh---------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----- 93 (552)
+..++++|||+|||++++.++.. .+.++||+||+++|+.||.+++.++.. ...+..+.|+....
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 116 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEA 116 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh--cceEEEEECCCChHHHHHH
Confidence 45788899999999997766543 245799999999999999999999974 25677777765321
Q ss_pred -CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 94 -PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 94 -~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
....+|+|+|++.+..... ...+...+++++|+||||+.
T Consensus 117 ~~~~~~i~v~T~~~l~~~~~--------~~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 117 LLRGADAVVATPGRALDYLR--------QGVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp HHHCCSEEEECHHHHHHHHH--------HTSSCCTTCSEEEEESHHHH
T ss_pred hhCCCCEEEECHHHHHHHHH--------cCCcchhhceEEEEEChhHh
Confidence 1357899999998743210 01122367899999988763
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.47 E-value=4.3e-14 Score=134.03 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=76.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCCC-CCcEEEEecCcccC------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTAD-DSMICRFTSEAKDK------P 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~-~~~I~~~~g~~~~~------~ 94 (552)
+..++++|||+|||++++.++... +.++||+||+++|+.||.+++.++.... ...+..+.|+.... .
T Consensus 41 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 120 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 120 (206)
T ss_dssp CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT
T ss_pred CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC
Confidence 457888999999999888766532 3479999999999999999999887532 45777777765321 2
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
...+|+|+|++.+.....+ ..+....++++|+||||+
T Consensus 121 ~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 121 DTVHVVIATPGRILDLIKK--------GVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp SCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEETHHH
T ss_pred CCCCEEEeCHHHHHHHHHc--------CCcCcccCCEEEEEChHH
Confidence 4578999999987432111 011225789999998876
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.47 E-value=4.8e-14 Score=135.59 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=74.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-----CCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-----PMG 96 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~-----~~~ 96 (552)
+..++++|||+|||++++.++.. .+.++||+||+++|+.||.+++.++.......+..+.|+.... ...
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 131 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD 131 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC
Confidence 45788899999999996655542 2458999999999999999999998865556777777765321 134
Q ss_pred CcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 97 ~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
.+|+|+|++.+.....+ ..+....++++|+||||+
T Consensus 132 ~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADE 166 (224)
T ss_dssp CSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHH
T ss_pred CCEEEECHHHHHHHHHh--------CCcchhhCcEEEEcChhH
Confidence 79999999987432111 011235689999998876
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.46 E-value=7.7e-14 Score=135.03 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=76.8
Q ss_pred hccCeecCCCCchhHHHHHHHH-h-----cCCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCccc-----CCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC-T-----VRKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKD-----KPM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~-~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~-----~~~ 95 (552)
+..++++|||+|||++++.++. . .+.++|||||+++|+.||.+++.++... +...+..+.|+... ...
T Consensus 62 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 141 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 141 (230)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc
Confidence 4578889999999999766553 2 2358999999999999999999998743 35678888886532 124
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
..+|+|+|++.+...... ..+...+++++|+||||+.
T Consensus 142 ~~~Iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp SCSEEEECHHHHHHHHHT--------TSSCGGGCCEEEESSHHHH
T ss_pred CCCEEEECHHHHHHHHhc--------CCcccccCCEEEeCCchHh
Confidence 689999999987532111 1122257899999988763
No 82
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.46 E-value=8.7e-14 Score=134.28 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=73.4
Q ss_pred hhccCeecCCCCchhHHHHHHHHh------------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC-
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT------------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK- 93 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~------------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~- 93 (552)
.+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.++.. ....+..+.|+....
T Consensus 57 ~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~ 135 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNG 135 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHH
Confidence 346788999999999998776542 356799999999999999999999864 344566666654321
Q ss_pred -----CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 94 -----PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 94 -----~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
..+.+|+|+|++.+...... ..+...+++++|+||||+
T Consensus 136 ~~~~~~~~~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 136 QIEDISKGVDIIIATPGRLNDLQMN--------NSVNLRSITYLVIDEADK 178 (228)
T ss_dssp CHHHHHSCCSEEEECHHHHHHHHHT--------TCCCCTTCCEEEECCHHH
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHc--------CCcCcccceEEEEECHHH
Confidence 14579999999987532110 111235789999998876
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.46 E-value=8.5e-14 Score=136.62 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=76.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhc---------------CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV---------------RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD 92 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~---------------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~ 92 (552)
+..++++|||+|||++++.++... +.++|||||+++|+.||.+++.++.......+..+.|+...
T Consensus 61 ~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADT 140 (253)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCH
Confidence 457888999999999987766421 24899999999999999999999886545567777766532
Q ss_pred C------CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 93 K------PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 93 ~------~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
. ....+|+|+|++.+.....+ ..+....++++|+||||+.
T Consensus 141 ~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 141 HSQIREVQMGCHLLVATPGRLVDFIEK--------NKISLEFCKYIVLDEADRM 186 (253)
T ss_dssp HHHHHHHSSCCSEEEECHHHHHHHHHT--------TSBCCTTCCEEEEETHHHH
T ss_pred HHHHHHhCCCCCEEEECHHHHHHHHHc--------CCCChhhCCEEEEeCHHHH
Confidence 1 14579999999988532111 0112256789999988763
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.2e-14 Score=139.22 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=77.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh----------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK---- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~---- 93 (552)
+..++++|||+|||++++.++.. .+.++|||+|+++|+.||.+++++++......+..+.|+....
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 171 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 171 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH
Confidence 45788999999999998776542 3567999999999999999999998865556777777765321
Q ss_pred --CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 94 --PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 94 --~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
..+.+|+|+|++.+....... ..+...+++++|+||||+
T Consensus 172 ~~~~~~~Iiv~Tp~~l~~~~~~~-------~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 172 KLGNGINIIVATPGRLLDHMQNT-------PGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp HHHHCCSEEEECHHHHHHHHHHC-------TTCCCTTCCEEEECSHHH
T ss_pred HhcCCCCEEEEcHHHHHHHHHcc-------CCcccccCCEEEEcChHH
Confidence 134789999999774311000 011235689999998876
No 85
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.45 E-value=7.2e-14 Score=137.14 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=76.4
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------CC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------PM 95 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~~ 95 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.++++++.......+..+.|+.... ..
T Consensus 81 ~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 160 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 160 (249)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT
T ss_pred CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC
Confidence 45788899999999998766542 1347999999999999999999998754345677777765321 14
Q ss_pred CCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 96 GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 96 ~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
..+|+|+|++.+...... ...+....++++|+||||+.
T Consensus 161 ~~~I~v~Tp~~l~~~l~~-------~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 161 KPHIIIATPGRLIDHLEN-------TKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp CCSEEEECHHHHHHHHHH-------STTCCCTTCCEEEECSHHHH
T ss_pred CCCEEEECHHHHHHHHHc-------CCCcCccccCEEEEcChhhh
Confidence 579999999988532100 01122357899999988763
No 86
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.45 E-value=5.2e-14 Score=135.09 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=75.9
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCchhHHHHHHHHHhhhCCC----CCcEEEEecCcccC----
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSGVSVEQWKHQFKLWSTAD----DSMICRFTSEAKDK---- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~----~~~I~~~~g~~~~~---- 93 (552)
+..++++|||+|||++++.++... +.++|||||+++|+.||.++++++.... ...+..+.|+....
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 121 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH
Confidence 567888999999999977766532 4589999999999999999999987542 35667777664211
Q ss_pred --CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 94 --PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 94 --~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
....+|+|+|++.+...... ..+....++++|+||||+.
T Consensus 122 ~~~~~~~Iiv~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 122 KLNVQPHIVIGTPGRINDFIRE--------QALDVHTAHILVVDEADLM 162 (219)
T ss_dssp CCSSCCSEEEECHHHHHHHHHT--------TCCCGGGCCEEEECSHHHH
T ss_pred HcCCCCCEEEeCHHHHHHHHHc--------CCCCcCcceEEEEcCchHH
Confidence 13578999999987532110 0112257899999988763
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.42 E-value=1e-13 Score=135.19 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=75.9
Q ss_pred hccCeecCCCCchhHHHHHHHHh-----------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC---
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-----------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK--- 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-----------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~--- 93 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+.++++.......+..+.|+....
T Consensus 67 ~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 146 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 146 (242)
T ss_dssp CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Confidence 46788999999999998776542 2457999999999999999999988754455677777765321
Q ss_pred ---CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 94 ---PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 94 ---~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
....+|+|+|++.+..... ...+...+++++|+||||+
T Consensus 147 ~~~~~~~~I~v~Tp~~l~~~l~--------~~~~~~~~~~~lViDEah~ 187 (242)
T 3fe2_A 147 RDLERGVEICIATPGRLIDFLE--------CGKTNLRRTTYLVLDEADR 187 (242)
T ss_dssp HHHHHCCSEEEECHHHHHHHHH--------HTSCCCTTCCEEEETTHHH
T ss_pred HHhcCCCCEEEECHHHHHHHHH--------cCCCCcccccEEEEeCHHH
Confidence 1347899999998743210 0111235789999998876
No 88
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.42 E-value=5.4e-13 Score=133.51 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=100.1
Q ss_pred hcCchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC
Q psy11640 310 VMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK 384 (552)
Q Consensus 310 ~~~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~ 384 (552)
+..++|+.+|..||....+.|+|+||||+++.+++.+..++ ++.+++|++...+++. . +.++.+.+.|+
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k~-----~-~~~~~i~Llts 178 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAA-----N-DFSCTVHLFSS 178 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEEES
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhhc-----c-cCCceEEEEEC
Confidence 34789999999999999889999999999999999999998 3467899966543221 1 35677777788
Q ss_pred ccccccC-----CCCCCEEEEeccCCCChhhH-HHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHH
Q psy11640 385 VADTSFD-----LPEANVLIQISSHGGSRRQE-AQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSR 449 (552)
Q Consensus 385 v~~~GlD-----lp~a~~VI~~~~~~~s~~q~-~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~ 449 (552)
+|+.|+| +..+|+||.+|+ .|||... +|++-|++|.++|. ++.|.||+||+.+|+|+.+..
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~Ds-dwNp~~d~iQa~~r~~R~~~gq---~k~v~V~RLvt~~TiEh~~l~ 245 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDT-TVDTSQKDIQYLLQYKRERKGL---ERYAPIVRLVAINSIDHCRLF 245 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECST-TCCTTSHHHHHHHCCC------------CCEEEEEETTSHHHHHHH
T ss_pred CCCCCcCcccccCCCCCEEEEECC-CCCCCChHHHHHHHHhhhccCC---CCcceEEEEeCCCCHHHHHHH
Confidence 8888886 799999999995 9999987 99999999985421 237999999999999996643
No 89
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.42 E-value=1.5e-13 Score=133.58 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=73.7
Q ss_pred hccCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCC-------
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKP------- 94 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~------- 94 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++++++......+..+.|+.....
T Consensus 68 ~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 147 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 147 (237)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhc
Confidence 45788899999999997776653 24589999999999999999999988644456666666543211
Q ss_pred CCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 95 MGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 95 ~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
...+|+|+|++.+.....+ ..+....++++|+||||+.
T Consensus 148 ~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~~ 185 (237)
T 3bor_A 148 EAPHIVVGTPGRVFDMLNR--------RYLSPKWIKMFVLDEADEM 185 (237)
T ss_dssp CCCSEEEECHHHHHHHHHT--------TSSCSTTCCEEEEESHHHH
T ss_pred CCCCEEEECHHHHHHHHHh--------CCcCcccCcEEEECCchHh
Confidence 2378999999977432110 1122356899999988763
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.41 E-value=3.1e-11 Score=131.94 Aligned_cols=61 Identities=8% Similarity=0.063 Sum_probs=50.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTS 88 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g 88 (552)
+..++.+|||+|||++++.++.....+++|++||++|+.|+.+++..+.......+..+.|
T Consensus 23 ~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~g 83 (551)
T 3crv_A 23 FLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVG 83 (551)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCC
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEcc
Confidence 4677789999999999998887788899999999999999999998775433445666655
No 91
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=134.15 Aligned_cols=107 Identities=16% Similarity=0.072 Sum_probs=75.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh-------cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCccc-------C
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-------VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-------K 93 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~-------~ 93 (552)
+..++++|||+|||++++.++.. .+.++|||||+++|+.||.+++.+++......+..+.|+... .
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 146 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhh
Confidence 45788899999999998766542 234799999999999999999999876545566666554311 1
Q ss_pred CCCCcEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 94 PMGCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 94 ~~~~~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
....+|+|+|++.+........ ..+...+++++|+||||+.
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~------~~~~~~~~~~lViDEah~~ 187 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDP------PGIDLASVEWLVVDESDKL 187 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSS------CSCCCTTCCEEEESSHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCC------CCcccccCcEEEEeChHHh
Confidence 2457999999998843211100 0112257899999988763
No 92
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.28 E-value=6.2e-12 Score=126.80 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=75.2
Q ss_pred hccCeecCCCCchhHHHHHHHHh-c-----CCcEEEEecCchhHHHHHHHHHhhhCC-CCCcEEEEecCcccC---CCCC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT-V-----RKRALVLCNSGVSVEQWKHQFKLWSTA-DDSMICRFTSEAKDK---PMGC 97 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~-~-----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~-~~~~I~~~~g~~~~~---~~~~ 97 (552)
+-.++++|||+|||++++..+.. . ..++||||||++|+.|+.+.+..+... +...+..+.|+.... ....
T Consensus 132 ~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 211 (300)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCC
T ss_pred CeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCC
Confidence 45778899999999998765542 2 236999999999999999999988753 345677776655321 2457
Q ss_pred cEEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCcc
Q psy11640 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPV 140 (552)
Q Consensus 98 ~IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~~ 140 (552)
+|+|+|++.|.....+. ..+....+++||+||||+.
T Consensus 212 ~IlV~TP~~l~~~l~~~-------~~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 212 QIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp SEEEECHHHHHHHHTTT-------CCCCGGGCSEEEETTHHHH
T ss_pred CEEEECHHHHHHHHHhc-------CCCChhhceEEEEeCHHHH
Confidence 89999999874321100 0112257899999988763
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.04 E-value=5.2e-10 Score=108.42 Aligned_cols=100 Identities=7% Similarity=-0.095 Sum_probs=65.7
Q ss_pred ccCeecCCCCchhHHHHHHHHh----cC----CcEEEEecCchhHHHHHHHHHhhhCCCC-CcEEEEecCccc-CCCCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT----VR----KRALVLCNSGVSVEQWKHQFKLWSTADD-SMICRFTSEAKD-KPMGCG 98 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~----~~----~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~-~~I~~~~g~~~~-~~~~~~ 98 (552)
-.++++|||+|||.+...++.. .+ ..+++++|+++|+.|..+.+....+... ..++.-...... .....+
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSE
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCe
Confidence 3567899999999765444331 22 3799999999999999999987665332 233321111111 114578
Q ss_pred EEEEcccccccccccchhHHHHHHHHhcCcccEEEEccCCc
Q psy11640 99 ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVP 139 (552)
Q Consensus 99 IvItTy~~l~~~~~~~~~~~~~~~~l~~~~~~liIvDE~h~ 139 (552)
|+|+|++.+... .... -.++++||+||+|.
T Consensus 158 Ivv~Tpg~l~~~---------l~~~--l~~~~~lVlDEah~ 187 (235)
T 3llm_A 158 IMFCTVGVLLRK---------LEAG--IRGISHVIVDEIHE 187 (235)
T ss_dssp EEEEEHHHHHHH---------HHHC--CTTCCEEEECCTTS
T ss_pred EEEECHHHHHHH---------HHhh--hcCCcEEEEECCcc
Confidence 999999977431 1112 36899999999886
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.52 E-value=6.6e-05 Score=82.73 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=60.7
Q ss_pred hcCCeEEEEeccHHHHHHHHHHcC---CceEeCCCCHHHHHHHHHhhccCCCeeEEEEe--CccccccCCCC--CCEEEE
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKMN---KPYIYGPTSQSERIQILQNFKLNPKVNTIFVS--KVADTSFDLPE--ANVLIQ 400 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L~---~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T--~v~~~GlDlp~--a~~VI~ 400 (552)
..++.++||+.+...++.+...|. .. ..-+++..+|..++++|+ ++--||+++ ....||||+|+ +.+||+
T Consensus 446 ~~~g~~lvlF~Sy~~l~~v~~~l~~~~~~-~~q~~~~~~~~~ll~~f~--~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 446 KVKKNTIVYFPSYSLMDRVENRVSFEHMK-EYRGIDQKELYSMLKKFR--RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HHCSCEEEEESCHHHHHHHTSSCCSCCEE-CCTTCCSHHHHHHHHHHT--TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHHhcchh-ccCCCChhHHHHHHHHhc--cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 356779999999999999888774 11 222344568999999999 466788887 48999999997 558888
Q ss_pred eccCCC--Ch--------------------------hhHHHHhhhccccCCCC
Q psy11640 401 ISSHGG--SR--------------------------RQEAQRLGRILRAKKGA 425 (552)
Q Consensus 401 ~~~~~~--s~--------------------------~q~~Qr~GRi~R~~~~k 425 (552)
..-|.. +| ....|.+||..|...+.
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~ 575 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDT 575 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCC
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCce
Confidence 542111 11 12369999999977654
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.45 E-value=0.00011 Score=81.42 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=38.9
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
=.++.+|+|+|||.+.+.++. ..+.++||++||...+++..+.+...
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 468889999999988776664 45789999999999999888887653
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.23 E-value=0.00063 Score=75.05 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=38.7
Q ss_pred hccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
.-.++.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+...
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45678899999999887666543 4578999999999999888887653
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.80 E-value=0.0017 Score=73.45 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=38.1
Q ss_pred hccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
.-.++.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+...
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 34678899999999887665542 4578999999999998888877653
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0028 Score=71.77 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=38.9
Q ss_pred hccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
.-.++.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+.+.
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34688899999999887665542 4689999999999999888888764
No 99
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.52 E-value=0.003 Score=65.99 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=35.1
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.++.+|+|+|||......+. ..+.+||+||++++..|.+.+.+
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHhc--cCCeEEEeCCHHHHHHHHHHhhh
Confidence 34679999999987666553 26889999999999999998853
No 100
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.39 E-value=0.0039 Score=68.40 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=36.2
Q ss_pred hhccCeecCCCCchhHHHHHHH--H-h----cCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTAC--C-T----VRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i--~-~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
.+-.++.+|+|+|||.+...++ . . .+.++++++||..++.|..+.+..+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 3456777999999995544333 2 1 23489999999999999888776543
No 101
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.94 E-value=0.025 Score=62.05 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=42.7
Q ss_pred hhhccCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
..+..++.+|||+|||+.++.++.. .+.+++|++||.+|..|+.+++.++.
T Consensus 21 ~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 21 KSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp HSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 3566788899999999998776542 37899999999999999999988754
No 102
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.58 E-value=0.027 Score=61.27 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=33.0
Q ss_pred hhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKH 70 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~ 70 (552)
.+-.++.+|+|+|||.+...++. ..+.++++++||...+....+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 34567789999999987665543 457899999999877764444
No 103
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.21 E-value=0.04 Score=58.11 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=38.9
Q ss_pred hhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHh---cCC-cEEEEecCchhHHHHHHH
Q psy11640 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCT---VRK-RALVLCNSGVSVEQWKHQ 71 (552)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~---~~~-~~LIl~Pt~~Lv~Qw~~e 71 (552)
..-|+++...-...=+. .+.-.++.+|+|+|||.++..++.. .+. ++++++||...+....+.
T Consensus 27 n~~Q~~av~~~~~~i~~-~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 27 TEGQKNAFNIVMKAIKE-KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CHHHHHHHHHHHHHHHS-SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhh
Confidence 34455555443222111 1236788899999999887666543 333 799999998766544433
No 104
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.89 E-value=0.056 Score=57.31 Aligned_cols=58 Identities=2% Similarity=0.019 Sum_probs=48.8
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTS 88 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g 88 (552)
.+..+...||+|||++...++...++++|||||+...+.||.++++.|++ .. |..|-+
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~--~~-v~~fp~ 72 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD--QM-VMNLAD 72 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCS--SC-EEECCC
T ss_pred CeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCC--Cc-EEEEeC
Confidence 45677789999999998888888889999999999999999999998874 23 655554
No 105
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.09 E-value=0.077 Score=54.56 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=24.1
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
-++++|+|+|||.+|-+++...+.+++.+.+
T Consensus 151 vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 4566899999999998887777777666655
No 106
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=91.70 E-value=0.19 Score=55.04 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=40.2
Q ss_pred hhccCeecCCCCchhHHHHHHHHh---c----CCcEEEEecCchhHHHHHHHHHhhhC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT---V----RKRALVLCNSGVSVEQWKHQFKLWST 77 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~---~----~~~~LIl~Pt~~Lv~Qw~~e~~~~~~ 77 (552)
....++.+|+|+|||.+.+.-+.. . ..++|+|++|...+.+..+.+....+
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 345678899999999987764432 1 24799999999999999999987764
No 107
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.40 E-value=0.82 Score=51.32 Aligned_cols=89 Identities=10% Similarity=0.137 Sum_probs=66.5
Q ss_pred cCchhHHHH-HHHHHHHhhcCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEE
Q psy11640 311 MNPNKYRAT-QYLIAYHERRGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTI 380 (552)
Q Consensus 311 ~~~~K~~~l-~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vL 380 (552)
...+|-.+. .-++... ..|.+++|.++++..+......+ .+..++|+++..+|..+++...+ |+++|+
T Consensus 398 TGSGKTlvall~il~~l-~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~-g~~~Iv 475 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN-GQIDVV 475 (780)
T ss_dssp SSSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS-SCCCEE
T ss_pred CCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc-CCCCEE
Confidence 345675533 2233322 46789999999988776655443 35678999999999999999995 899999
Q ss_pred EEe-CccccccCCCCCCEEEEe
Q psy11640 381 FVS-KVADTSFDLPEANVLIQI 401 (552)
Q Consensus 381 v~T-~v~~~GlDlp~a~~VI~~ 401 (552)
|+| ..+...+++..+++||+=
T Consensus 476 VgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEE
T ss_pred EECHHHHhhhhhccCCceEEec
Confidence 999 666677889999988873
No 108
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=89.48 E-value=1.9 Score=44.07 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=35.9
Q ss_pred hccCeecCCCCchhHHHHHHHH-----hcCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC-----TVRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~-----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
+...+..|-+.|||.++...+. ..+..+++++|+..-+..+.+.+..+.
T Consensus 179 R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 3467889999999987554332 234579999999987776777777665
No 109
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.87 E-value=0.19 Score=52.31 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=30.6
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
-.+..++.+|+|+|||+.|-+++...+.+++.+..+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 356778889999999999999998888888877764
No 110
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=88.85 E-value=2.4 Score=45.94 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=37.6
Q ss_pred hccCeecCCCCchhHHHHHHHH-----hcCCcEEEEecCchhHHHHHHHHHhhhC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC-----TVRKRALVLCNSGVSVEQWKHQFKLWST 77 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~-----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~ 77 (552)
+...+..|-|.|||..+...+. ..+.++++++|+...+....+.++.+..
T Consensus 179 r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 4577889999999976543322 2245899999999988888888887764
No 111
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.68 E-value=0.24 Score=51.71 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=29.8
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
.+..++.+|+|+|||+.|-+++...+.+++.+..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 46778889999999999999998888888777664
No 112
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.65 E-value=0.24 Score=50.94 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=31.1
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCc
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSG 62 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~ 62 (552)
-.+..+..+|+|+|||+.|-+++...+.+.+.|..+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 3467788899999999999999999998888777643
No 113
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=88.18 E-value=12 Score=32.50 Aligned_cols=116 Identities=9% Similarity=0.083 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc----CCce----EeCCCCHHHHHHHHHhhccCCCeeEEEEeCc
Q psy11640 314 NKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM----NKPY----IYGPTSQSERIQILQNFKLNPKVNTIFVSKV 385 (552)
Q Consensus 314 ~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L----~~~~----i~G~~~~~eR~~il~~F~~~g~~~vLv~T~v 385 (552)
.+....-.|+++....|.+++|.|.+...++.|-+.| .-.+ +.|+-. .....|++++.-
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~-------------~~~~PV~L~~~~ 89 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP-------------RGGAPVEIAWPQ 89 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS-------------TTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC-------------CCCCCEEEeCCC
Confidence 3455556788777779999999999999999999999 1122 223221 124568887632
Q ss_pred cccccCCCCCCEEEEeccCCCChhhHHHHhhhccccCCCCCCCceeEEEEEEecCCchhhHHHHHHHHHHHHcCCCeeE
Q psy11640 386 ADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKV 464 (552)
Q Consensus 386 ~~~GlDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~~k~~~~~~v~vy~lvs~~t~e~~~~~~r~~~l~~~g~~~~v 464 (552)
.. ..+..+++|+++. .. +. + ..|--| |+.||+.+......++.|=+.|.+.||....
T Consensus 90 ~~---~~~~~~vLinL~~-~~-p~-~---~~~f~R-------------vie~v~~d~~~~~~AR~r~k~yr~~G~~l~~ 146 (150)
T 3sxu_A 90 KR---SSSRRDILISLRT-SF-AD-F---ATAFTE-------------VVDFVPYEDSLKQLARERYKAYRVAGFNLNT 146 (150)
T ss_dssp SC---CCSCCSEEEECCS-SC-CG-G---GGGCSE-------------EEEEECSSGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred CC---CCCcCCEEEECCC-CC-Cc-c---ccCCCE-------------EEEEeCCCHHHHHHHHHHHHHHHHCCCCcEE
Confidence 11 2245789999984 22 22 1 122222 5668887776667777788889999986543
No 114
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.12 E-value=0.25 Score=51.37 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=29.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
.+..+..+|+|+|||+.|-+++...+.+++.|..+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 45577889999999999999998888887777654
No 115
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.99 E-value=0.57 Score=55.07 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=58.0
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-CccccccCCCCCCE
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADTSFDLPEANV 397 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~~GlDlp~a~~ 397 (552)
..+.+++|.++++..+......+ .+..++|..+..++..+++.... |.++|+|+| ..+...+++...++
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~-g~~dIvV~T~~ll~~~~~~~~l~l 728 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE-GKIDILIGTHKLLQSDVKFKDLGL 728 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT-TCCSEEEECTHHHHSCCCCSSEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHhCCccccccce
Confidence 35779999999987776555443 24568899999999999999985 899999999 77777788888888
Q ss_pred EEE
Q psy11640 398 LIQ 400 (552)
Q Consensus 398 VI~ 400 (552)
||+
T Consensus 729 vIi 731 (1151)
T 2eyq_A 729 LIV 731 (1151)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 116
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.76 E-value=0.38 Score=49.85 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.3
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
-.+..+..+|+|+|||+.|-+++...+.+.+.+..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 346778889999999999999998888888777664
No 117
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.51 E-value=0.41 Score=50.08 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=30.0
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
-.+.-++.+|+|+|||+.|-+++...+.+++.+..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 456677789999999999999998888888777664
No 118
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.07 E-value=0.19 Score=46.88 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=23.4
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
|++.-++.+|+|+|||..|.+++....+++
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 456677889999999999988877655543
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.38 E-value=0.65 Score=44.74 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=26.3
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
..+.-++++|+|+|||..|-+++...+.+.+.+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3445677899999999999888877777766553
No 120
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.07 E-value=0.53 Score=46.19 Aligned_cols=32 Identities=9% Similarity=-0.026 Sum_probs=26.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
..++++|+|+|||..|-+++...+.+++.+..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~ 69 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSA 69 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH
Confidence 44566999999999999888888877777665
No 121
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=83.53 E-value=0.89 Score=50.14 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=47.5
Q ss_pred hccCeecCCCCchhHHHHHHHH----h---cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----T---VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGIL 100 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~---~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~Iv 100 (552)
...++.++.|+|||.+.+.-+. . ...++|+|+.|...+....+.+....+... ...+.
T Consensus 16 ~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~---------------~~~~~ 80 (673)
T 1uaa_A 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE---------------ARGLM 80 (673)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT---------------TTTSE
T ss_pred CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc---------------ccCCE
Confidence 3467889999999988765433 2 135799999999999988888887653210 12366
Q ss_pred EEccccccc
Q psy11640 101 VTTYSMISH 109 (552)
Q Consensus 101 ItTy~~l~~ 109 (552)
|+|++.+..
T Consensus 81 v~Tfhs~~~ 89 (673)
T 1uaa_A 81 ISTFHTLGL 89 (673)
T ss_dssp EEEHHHHHH
T ss_pred EEeHHHHHH
Confidence 788877653
No 122
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=83.40 E-value=0.46 Score=42.58 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=26.7
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc----CCcEEEEecCchhHHHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKHQ 71 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~----~~~~LIl~Pt~~Lv~Qw~~e 71 (552)
.+.-.+++|+|+|||..+-+++... +..++++ +...++.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 85 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHL 85 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 3445677999999998877665432 3344443 334455544443
No 123
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.11 E-value=0.62 Score=45.10 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=19.9
Q ss_pred hhhccCeecCCCCchhHHHHHHHH
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
|++--++.+|+|+|||+.|.+++.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHh
Confidence 455677889999999999988775
No 124
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.11 E-value=0.81 Score=43.44 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=24.7
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.-++++|+|+|||..+-+++...+.+.+.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~~~~~ 72 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFLAMAG 72 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEech
Confidence 34678999999999988887777666655544
No 125
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.47 E-value=0.87 Score=47.55 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=24.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-CCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-RKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-~~~~LIl~P 60 (552)
+.-++++|+|+|||..|-+++... +.+++.+..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 345678999999999998888777 444444433
No 126
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.30 E-value=0.53 Score=46.77 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=26.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++++|+|+|||..|-+++...+.+++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 446788999999999998888887777666644
No 127
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.81 E-value=0.44 Score=47.48 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=24.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-CCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-RKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-~~~~LIl~P 60 (552)
+.-++++|+|+|||..|-+++... +.+++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 456778999999999998888776 444444333
No 128
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.15 E-value=0.98 Score=39.00 Aligned_cols=24 Identities=8% Similarity=-0.159 Sum_probs=18.7
Q ss_pred hhccCeecCCCCchhHHHHHHHHh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
..--++++|+|+|||.+|-++...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 345678899999999998776543
No 129
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.02 E-value=1.1 Score=43.90 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=25.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++++|+|+|||..+-+++...+.+.+.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 346778999999999998888777766655543
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.85 E-value=1 Score=43.48 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=26.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.+.-++++|+|+|||..+-+++...+.+.+.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 3456788999999999998887777766665543
No 131
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.82 E-value=4.3 Score=42.23 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=21.9
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
--.+++|+|+|||-++..++. ..+.++++++
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345679999999988776654 3355676665
No 132
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.14 E-value=0.53 Score=47.24 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=19.9
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
--++++|||+|||-+++.++...+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 356779999999999999887665
No 133
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=79.83 E-value=1.2 Score=40.61 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=22.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhc---CCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV---RKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl~ 59 (552)
+--++++|+|+|||..+.+++... +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 456677999999999887766533 44555443
No 134
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=79.75 E-value=1.3 Score=40.11 Aligned_cols=33 Identities=12% Similarity=-0.060 Sum_probs=25.4
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSG 62 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~ 62 (552)
.++++|+|+|||..++.++.. .+.+++++.|..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 356799999999988776653 467899998864
No 135
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=79.68 E-value=1.3 Score=40.48 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=25.9
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSG 62 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~ 62 (552)
...++|+|+|||..++.++.+ .+.+++++.|..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 345699999999888877764 477899999863
No 136
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.49 E-value=0.59 Score=46.32 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=19.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-++++|||+|||-.++.++...+
T Consensus 13 i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCccCHHHHHHHHHHhCC
Confidence 35679999999999998887654
No 137
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.45 E-value=1.2 Score=42.26 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=23.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
+.-++++|+|+|||..+-+++...+.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3467889999999999887776666555444
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.31 E-value=1.2 Score=41.23 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=18.8
Q ss_pred hhhccCeecCCCCchhHHHHHHHH
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
..+.-++++|+|+|||..+-.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445667889999999988776654
No 139
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.33 E-value=1.3 Score=44.64 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=26.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++++|||+|||.+|-+++...+.+.+.+-.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 456778999999999998888877777666544
No 140
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.27 E-value=1.5 Score=42.70 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=24.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
+.-++++|+|+|||..+-+++...+.+.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 45677899999999998888776665554443
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.66 E-value=2.9 Score=39.77 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=24.7
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcC---CcEEEEecCchh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVR---KRALVLCNSGVS 64 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~---~~~LIl~Pt~~L 64 (552)
..--++++|+|+|||..|-++..... .+++.+ +...+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v-~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL-NCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE-EGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE-ecCCC
Confidence 45567789999999998877765443 345444 43334
No 142
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.37 E-value=1.3 Score=44.58 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=26.1
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-++++|+|+|||..|-+++...+.+++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 346788999999999999888887777665543
No 143
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.36 E-value=2.3 Score=41.95 Aligned_cols=44 Identities=9% Similarity=-0.065 Sum_probs=28.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhc---CCcEEEEecCchhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV---RKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
+--++++|+|+|||..+-+++... +.+++.+.. ..+..++...+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~ 84 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-DDFAQAMVEHL 84 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-HHHHHHHHHHH
Confidence 456678999999999887766544 566666544 33444444333
No 144
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.17 E-value=1.3 Score=39.61 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=21.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
+.-.+++|+|+|||-++-.++...+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345677999999999998888776654
No 145
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.97 E-value=1.5 Score=42.57 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=25.6
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.+.-++++|+|+|||.++-+++...+.+++.+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4557788999999999988887777666555443
No 146
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=76.73 E-value=2.1 Score=47.65 Aligned_cols=50 Identities=8% Similarity=-0.018 Sum_probs=38.5
Q ss_pred hccCeecCCCCchhHHHHHHHH----hc---CCcEEEEecCchhHHHHHHHHHhhhC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TV---RKRALVLCNSGVSVEQWKHQFKLWST 77 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~---~~~~LIl~Pt~~Lv~Qw~~e~~~~~~ 77 (552)
...++.++.|||||.+.+.-++ .. ...+|+|+.|...+....+.+....+
T Consensus 25 g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 25 GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4567889999999988765443 21 24799999999999888888887653
No 147
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.42 E-value=1.6 Score=44.04 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=26.2
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.+.-++++|+|+|||.+|-+++...+.+++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 3456788999999999998888777766665544
No 148
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.18 E-value=0.94 Score=43.34 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRAL 56 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~L 56 (552)
+.-++++|+|+|||..+-+++.....+++
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 34678899999999998888776655443
No 149
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.96 E-value=1.7 Score=44.06 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=24.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
..-++++|||+|||.+|-+++...+.+++.+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4567889999999999988887776665544
No 150
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=75.72 E-value=2.1 Score=40.24 Aligned_cols=32 Identities=16% Similarity=-0.071 Sum_probs=25.1
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~ 62 (552)
++.+|+|+|||..++.++.+ .+.+++++.|..
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 44599999999988877654 467899998865
No 151
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=75.64 E-value=0.75 Score=39.71 Aligned_cols=40 Identities=5% Similarity=-0.277 Sum_probs=26.4
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQW 68 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw 68 (552)
...-++++|+|+|||.+|-++..... + ++.++...+...|
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~-~~~~~~~~~~~~~ 66 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-P-WVSPARVEYLIDM 66 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-C-EECCSSTTHHHHC
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-C-eEEechhhCChHh
Confidence 44577889999999988776654444 3 4444545565554
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=75.60 E-value=3.3 Score=38.60 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=30.6
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
..+.+|+|+|||..++.++. ..+.+++++.... ...+..+.+..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHH
Confidence 35679999999998776654 3466888887643 45666665553
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=75.15 E-value=1.6 Score=41.74 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=19.6
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
++++|||+|||-+|..++...+..
T Consensus 5 ~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEECCCCcCHHHHHHHHHhcCCCe
Confidence 467999999999999888776643
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=75.11 E-value=1.9 Score=38.11 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=18.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
.+.-++++|+|+|||..+-.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345678899999999988766654
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=74.76 E-value=1.9 Score=42.71 Aligned_cols=30 Identities=7% Similarity=-0.022 Sum_probs=23.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALV 57 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LI 57 (552)
..-++++|+|+|||..+-+++...+.+++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 457788999999999998887776666444
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=74.66 E-value=1.5 Score=43.31 Aligned_cols=32 Identities=16% Similarity=-0.024 Sum_probs=22.4
Q ss_pred hccCeecCCCCchhHHHHHHHH----hcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC----TVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~ 59 (552)
+.-++++|||+|||..+.+++. ..+.+++++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4567789999999998776654 3345665543
No 157
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=74.32 E-value=1.5 Score=38.76 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=19.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.+.-++++|+|+|||..+-.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456778999999999887766543
No 158
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=74.29 E-value=2 Score=38.96 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=30.2
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.+++|||||..|..++.. +.+++.+++....-..|.+.+..+
T Consensus 3 lV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHHH
T ss_pred EEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 57799999999999888877 778999998665444455555543
No 159
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.19 E-value=1.2 Score=44.17 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=18.8
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-++++|||+|||-.++.++...+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEECCCcCCHHHHHHHHHHhCc
Confidence 35679999999999998876654
No 160
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=74.16 E-value=3.6 Score=38.36 Aligned_cols=44 Identities=5% Similarity=0.055 Sum_probs=30.7
Q ss_pred CeecCCCCchhHHHHHHHH----hcCCcEEEEecCchhHHHHHHHHHhh
Q psy11640 31 KKKKRPSAGKSLVGVTACC----TVRKRALVLCNSGVSVEQWKHQFKLW 75 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~----~~~~~~LIl~Pt~~Lv~Qw~~e~~~~ 75 (552)
++.++||+|||..++.++. ..+.+++++... .-..|..+.+..+
T Consensus 34 ~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 34 LLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHc
Confidence 5679999999988877654 346678877764 4566666666543
No 161
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.66 E-value=1.2 Score=49.92 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.0
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
..+..+..+|+|+|||+.|-+++...+.+.+.+..
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCH
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEecc
Confidence 34567888999999999999888888877665544
No 162
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=72.42 E-value=2.6 Score=37.28 Aligned_cols=27 Identities=22% Similarity=0.035 Sum_probs=21.4
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALV 57 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LI 57 (552)
++++|+|+|||-++-.+....+.+.+.
T Consensus 7 ~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 7 ILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 456899999999998888877766543
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=72.19 E-value=2.2 Score=41.87 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=23.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
+.-++++|+|+|||..+-++....+.+++.+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4567889999999999888777666555433
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.05 E-value=4.1 Score=42.49 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=25.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.-.++++|+|+|||..+-++......+.+-+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 346888999999999988887777666554443
No 165
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=72.03 E-value=3.1 Score=38.76 Aligned_cols=31 Identities=16% Similarity=0.001 Sum_probs=25.0
Q ss_pred eecCCCCchhHHHHHHHHh---cCCcEEEEecCc
Q psy11640 32 KKKRPSAGKSLVGVTACCT---VRKRALVLCNSG 62 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~ 62 (552)
..+|+|+|||..++..+.+ .+.+++|+.|..
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 5699999999988887653 477899999865
No 166
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=72.03 E-value=2.5 Score=38.65 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=28.9
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEecCch-hHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGV-SVEQWKHQF 72 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~-Lv~Qw~~e~ 72 (552)
..+++|+|+|||..+..++...+.+++++..... -..+|.+..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHH
Confidence 4577999999998888777655667777765331 334555433
No 167
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=71.89 E-value=2.2 Score=39.22 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.3
Q ss_pred CeecCCCCchhHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~ 50 (552)
++.+|+|+|||..++..+..
T Consensus 9 l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 9 LITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 57799999999998876543
No 168
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.88 E-value=2.2 Score=44.58 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=25.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcC--CcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVR--KRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~--~~~LIl~P 60 (552)
+..++.+|||+|||..|-+++...+ .+++.+..
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 5678889999999999998887766 45555444
No 169
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.77 E-value=1.8 Score=43.12 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=20.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.-++++|||+|||-++..++...+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 346779999999999998887765
No 170
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=71.74 E-value=11 Score=38.31 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=55.2
Q ss_pred hcCCeEEEEeccHHHHHHHHHHc--------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Cccc---cccCCCCC
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVKM--------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVAD---TSFDLPEA 395 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~---~GlDlp~a 395 (552)
..+.++||.++++..+..+...+ .+..++|+++..+|...++.+.. ++.+|+|+| ..+. .-+++...
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-DDYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH-TCCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc-CCCCEEEECHHHHHHHHHHhccccc
Confidence 46789999999988877665544 34578999999999999999985 679999998 3321 12666788
Q ss_pred CEEEE
Q psy11640 396 NVLIQ 400 (552)
Q Consensus 396 ~~VI~ 400 (552)
++||+
T Consensus 141 ~~iVi 145 (414)
T 3oiy_A 141 DFVFV 145 (414)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88877
No 171
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=71.35 E-value=2.3 Score=41.35 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.3
Q ss_pred cCeecCCCCchhHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~ 50 (552)
-++++|+|+|||.++-+++..
T Consensus 70 vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999998766643
No 172
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=70.29 E-value=4.8 Score=39.82 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=29.3
Q ss_pred CeecCCCCchhHHHHHHHHhc---------CCcEEEEecCchh-HHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV---------RKRALVLCNSGVS-VEQWKHQFKL 74 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~---------~~~~LIl~Pt~~L-v~Qw~~e~~~ 74 (552)
.+.+|+|+|||..++.++... +.+++++.....+ ..+..+.+++
T Consensus 111 ~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred EEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999988877643 4678888765432 3444433333
No 173
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=69.91 E-value=3 Score=39.40 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=21.7
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
-++++|+|+|||..+-+++.....+.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 57889999999988877776665544443
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=69.85 E-value=5.1 Score=39.31 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.3
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~ 62 (552)
+...|+|+|||..+-+++...+.+++.+-++.
T Consensus 52 L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred EeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 44466999999999888877777777666554
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.66 E-value=5.8 Score=48.87 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=25.5
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSG 62 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~ 62 (552)
-+++.|+|+|||..|++++. ..+.+++++....
T Consensus 1430 vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1430 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 45679999999999887765 3567888888754
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.39 E-value=2.7 Score=44.39 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=25.1
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
+.-++.+|+|+|||.+|-++....+.+++.+-
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 45678899999999999888777776665544
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=68.88 E-value=3.1 Score=43.82 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=24.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
+.-++++|+|+|||..+-+++...+.+++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 34677899999999998888777666665543
No 178
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=68.88 E-value=1.5 Score=43.67 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=22.9
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
-++.+|+|+|||..+..++...+.+++++.-
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3678999999999998887654455555443
No 179
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=68.52 E-value=11 Score=41.08 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.5
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVE 66 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~ 66 (552)
..++.++-|.|||..+-.++......++|.+|+..-+.
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD 231 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH
Confidence 45788999999997766666666677899999987765
No 180
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.52 E-value=3 Score=36.27 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=18.4
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
.+++|+|+|||-++-.+ ...+.++
T Consensus 5 ~l~G~~GsGKsT~a~~L-~~~g~~~ 28 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL-KERGAKV 28 (179)
T ss_dssp EEECCTTSCHHHHHHHH-HHTTCEE
T ss_pred EEECCCCCCHHHHHHHH-HHCCCcE
Confidence 35699999999998877 5555553
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=68.50 E-value=4.5 Score=42.03 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=27.2
Q ss_pred hccCeecCCCCchhHHHHHHHHhc-----CCcEEEEecCchhHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQ 71 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~-----~~~~LIl~Pt~~Lv~Qw~~e 71 (552)
+-.++++|+|+|||..+-+++... +.+++.+.. ..+..++...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~~~~~~~~~~ 178 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDS 178 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHH
Confidence 456788999999998877665533 455555544 3344444333
No 182
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=68.07 E-value=2.4 Score=39.08 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.2
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.-++++|||+|||-.|+.++.+..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 356789999999999988876543
No 183
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.01 E-value=4.1 Score=40.83 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=18.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
--++++|+|+|||..+-.++...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46677999999999887776543
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.72 E-value=3 Score=37.86 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=21.2
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
.-.+++|+|+|||-++-.++...+.+.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 456779999999999888877666543
No 185
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=67.65 E-value=3.2 Score=43.20 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=27.0
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.+..++++|||+|||..+-+++...+.+.+.+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3567788999999999998888888777666543
No 186
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.94 E-value=3.6 Score=39.75 Aligned_cols=27 Identities=15% Similarity=0.104 Sum_probs=20.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
.-++++|+|+|||..+-+++...+...
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 367789999999988777766554433
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.58 E-value=3.8 Score=39.37 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=21.8
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
-++++|+|+|||..+-+++.....+.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 57889999999998877776665554444
No 188
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=66.15 E-value=3.3 Score=38.26 Aligned_cols=24 Identities=17% Similarity=-0.057 Sum_probs=19.2
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
++.+|||+||+-+|-.++...+-+
T Consensus 4 il~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCe
Confidence 356899999999998888776643
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.93 E-value=3.7 Score=43.57 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=27.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNS 61 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt 61 (552)
+-.++++|+|+|||..+-+++...+.+++.+-.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567789999999999988888887777666544
No 190
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=65.59 E-value=2.6 Score=43.23 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.2
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.+++|||+|||-++..++...+.
T Consensus 6 ~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 6 VIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEECcchhhHHHHHHHHHHHCCC
Confidence 46799999999999988876653
No 191
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=65.40 E-value=4.2 Score=35.26 Aligned_cols=21 Identities=19% Similarity=-0.118 Sum_probs=16.1
Q ss_pred ccCeecCCCCchhHHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~ 49 (552)
--.+++|+|+|||..+-+++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455779999999987666554
No 192
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=65.38 E-value=2.9 Score=41.89 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=19.2
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|||+|||-+|..++...+
T Consensus 10 I~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcCcHHHHHHHHHHHcC
Confidence 35679999999999998887765
No 193
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.36 E-value=3.7 Score=35.81 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=18.8
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+++|+|+|||-++-.+....+.+
T Consensus 5 ~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 5 ILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCe
Confidence 467999999999988777666543
No 194
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=65.16 E-value=3.2 Score=40.38 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=21.5
Q ss_pred ccCeecCCCCchhHHHHHHHHhc---CCcEEEE
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV---RKRALVL 58 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl 58 (552)
--++++|+|+|||.+|-+++... ..+++.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 46788999999999887766543 3344444
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=64.89 E-value=4.2 Score=40.59 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=23.7
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCC--cEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRK--RALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~--~~LIl~ 59 (552)
+..++++|+|+|||..+-+++..... +.+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 35678899999999999888776653 444443
No 196
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.79 E-value=3.1 Score=41.05 Aligned_cols=32 Identities=16% Similarity=-0.032 Sum_probs=25.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
.+..++++|+|+|||..+-++....+.+...+
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i 77 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRI 77 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 35778889999999999888877777665543
No 197
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=64.78 E-value=12 Score=43.69 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=62.8
Q ss_pred CchhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc--------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe
Q psy11640 312 NPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM--------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS 383 (552)
Q Consensus 312 ~~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T 383 (552)
..+|-.+..-.+......+.++||.++++..+..+...+ .+..++|+++..+|...++.+.. +..+|+|+|
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~-g~~~IlV~T 181 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-DDYHILVFS 181 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT-SCCSEEEEE
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC-CCCCEEEEC
Confidence 345654332222222257789999999999888877665 34578999999899999999985 789999998
Q ss_pred -Ccc----ccccCCCCCCEEEE
Q psy11640 384 -KVA----DTSFDLPEANVLIQ 400 (552)
Q Consensus 384 -~v~----~~GlDlp~a~~VI~ 400 (552)
..+ .. +++..+++||+
T Consensus 182 p~rL~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 182 TQFVSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp HHHHHHSHHH-HHTSCCSEEEE
T ss_pred HHHHHHHHHh-hcccCcCEEEE
Confidence 222 22 66778888887
No 198
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=63.20 E-value=2.3 Score=47.76 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=29.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQW 68 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw 68 (552)
+.-++.+|+|+|||+.|=+++...+.+++.|.. .+++..|
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~-~~l~sk~ 278 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLING-PEIMSKL 278 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH-HHHHSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh-HHhhccc
Confidence 456777999999999998888888877766654 3454433
No 199
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=62.82 E-value=4.6 Score=36.44 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=17.6
Q ss_pred ccCeecCCCCchhHHHHHHHHh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
.-++++|+|+|||..+-.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999887766654
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=62.45 E-value=6.6 Score=39.56 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=25.4
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVS 64 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~L 64 (552)
.+.+|+|+|||..++.++.. .+++++++.+...+
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 45699999999888777653 46788888775544
No 201
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.33 E-value=4.9 Score=35.66 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=19.5
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+++++|+|||-+|-.+....+.+
T Consensus 6 ~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 6 VLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHHHHcCCC
Confidence 467999999999998887766654
No 202
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=62.20 E-value=3.2 Score=38.78 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=19.0
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
++.+|+|+|||-+|-.++...+-+
T Consensus 33 ~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 33 FVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCc
Confidence 346999999999998887776543
No 203
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=62.17 E-value=4.4 Score=35.89 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=20.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.-++++|+|+|||.++-.+....+.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 34567999999999988877766544
No 204
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=61.85 E-value=4.9 Score=42.53 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=24.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
.-++++|+|+|||..+-+++...+.+.+.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 35788999999999988777766666555443
No 205
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=61.65 E-value=6.6 Score=40.43 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=29.1
Q ss_pred hhhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHH
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVE 66 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~ 66 (552)
...+.++++|||+|||...-.++. ..+.+++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 356778999999999986533332 35667888888777653
No 206
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=61.53 E-value=4.8 Score=36.83 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=19.1
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+++|+|+|||-++-.++...+.+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCc
Confidence 467999999999988877766543
No 207
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.33 E-value=4.8 Score=35.89 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=19.3
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
-++++|+|+|||-++-.+....+.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3466999999999988877666544
No 208
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.25 E-value=4.6 Score=35.60 Aligned_cols=26 Identities=12% Similarity=-0.101 Sum_probs=20.3
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.-.++.|+|+|||-++-.++...+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34567999999999988887766643
No 209
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=60.77 E-value=4.9 Score=36.73 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=19.1
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+.+|+|+|||-++-.++...+.+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCc
Confidence 467999999999988877766544
No 210
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=60.22 E-value=7.5 Score=38.70 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=18.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
+-.++++|+|+|||..+-.++...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 446677999999999887766543
No 211
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=60.06 E-value=6.3 Score=38.58 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=22.6
Q ss_pred hhccCeecCCCCchhHHHHHHHHhc---CCcEEEE
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTV---RKRALVL 58 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl 58 (552)
..--++++|||+|||.+|-++.... ..+++.+
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v 59 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTL 59 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEE
Confidence 4556788999999999987766543 3455444
No 212
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=59.67 E-value=5.9 Score=34.58 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=19.5
Q ss_pred eecCCCCchhHHHHHHHHhcCCcE
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRKRA 55 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~~~ 55 (552)
+.+++|+|||-++-.+....+.++
T Consensus 12 l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCCE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCE
Confidence 568999999999988877777554
No 213
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.62 E-value=5.1 Score=34.98 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=19.0
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+++++|+|||-++-.+....+.+
T Consensus 6 ~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 6 FMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCc
Confidence 456899999999988887766644
No 214
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=59.57 E-value=5.1 Score=35.53 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.5
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||.++-.+....+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34669999999999888776665
No 215
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=59.47 E-value=5.1 Score=35.77 Aligned_cols=26 Identities=12% Similarity=-0.097 Sum_probs=20.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.-.+++|+|+|||-++-.+....+.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 34566999999999988887666543
No 216
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.29 E-value=6.2 Score=35.31 Aligned_cols=24 Identities=13% Similarity=-0.098 Sum_probs=19.0
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.-.+++|+|+|||-++-.+....+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 345669999999999887777665
No 217
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=59.25 E-value=5.4 Score=36.07 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=19.5
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
-.+++|+|+|||-++-.+....+.+
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3456899999999988887766654
No 218
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=58.88 E-value=7.1 Score=39.32 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=25.3
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVS 64 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~L 64 (552)
++.+|+|+|||..++.++.. .+.+++++.....+
T Consensus 67 ~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 67 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 45689999999998877653 45688888775433
No 219
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=58.85 E-value=8.3 Score=35.26 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=23.2
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecC
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNS 61 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt 61 (552)
.+.+|+|+|||.-.+..+. ..+.+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4569999999966555554 346789999886
No 220
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=58.82 E-value=5.4 Score=35.47 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=18.1
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.+++|+|+|||-++-.+....+.
T Consensus 7 ~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 7 FVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 45689999999998877766654
No 221
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=58.81 E-value=11 Score=37.57 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=24.6
Q ss_pred CeecCCCCchhHHHHHHHHh---------cCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---------VRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---------~~~~~LIl~Pt~ 62 (552)
.+.+|+|+|||..++.++.. .+.+++++....
T Consensus 126 ~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 126 EAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46799999999998887764 246788887654
No 222
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.73 E-value=6.2 Score=34.45 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=17.7
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.+....+
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999988777666555
No 223
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=58.73 E-value=2.9 Score=41.45 Aligned_cols=24 Identities=8% Similarity=-0.184 Sum_probs=18.7
Q ss_pred hccCeecCCCCchhHHHHHHHHhc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
...++.+|||+|||.++-.++...
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 345677999999999988777644
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=58.61 E-value=12 Score=38.60 Aligned_cols=31 Identities=6% Similarity=-0.079 Sum_probs=21.5
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
--.+++|+|+|||-++..++. ..++++++++
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 345569999999987665553 3466777665
No 225
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=58.59 E-value=5.4 Score=35.35 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=18.2
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.+....+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34568999999999887776665
No 226
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.25 E-value=5.7 Score=38.60 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=21.5
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
-++++|+|+|||-++-.++.......++|.
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 456699999999988888766644444443
No 227
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=58.14 E-value=14 Score=33.67 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=27.3
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
-.+++|+|+|||..+..++. ..+.+++++.... ...+....+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 71 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE-SRDSIIRQAK 71 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS-CHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc-CHHHHHHHHH
Confidence 35679999999977666553 3456787776533 3444444443
No 228
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=58.00 E-value=7 Score=38.78 Aligned_cols=35 Identities=14% Similarity=-0.072 Sum_probs=26.2
Q ss_pred CeecCCCCchhHHHHHHHHh---c--CCcEEEEecCchhH
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---V--RKRALVLCNSGVSV 65 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~--~~~~LIl~Pt~~Lv 65 (552)
.+..|+|+|||..++.+++. . +.+++++..-..+-
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 56799999999888876653 2 56888888765553
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=57.79 E-value=10 Score=37.17 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=28.8
Q ss_pred CeecCCCCchhHHHHHHHHhc---------------C----CcEEEEecCchh-HHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV---------------R----KRALVLCNSGVS-VEQWKHQFKL 74 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~---------------~----~~~LIl~Pt~~L-v~Qw~~e~~~ 74 (552)
.+.+|+|+|||..++.++... + .+++++..-..+ ..+..+.+++
T Consensus 102 ~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 102 EFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 566999999999988877541 2 578887765432 4444444443
No 230
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=57.57 E-value=6.3 Score=35.08 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=18.8
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALV 57 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LI 57 (552)
-.+++|+|+|||-++-.++.......+.
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~~~g~i~ 39 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLPGVPKVH 39 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCSSSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCeEE
Confidence 4567999999998876665543333333
No 231
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=57.41 E-value=7.3 Score=36.02 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=22.8
Q ss_pred cCeecCCCCchhHHHHHHHHh--c-------CCcEEEEecC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT--V-------RKRALVLCNS 61 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~--~-------~~~~LIl~Pt 61 (552)
-.+++|+|+|||..+..++.. . ...++++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 356799999999988877663 2 3467766653
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.41 E-value=5.8 Score=36.73 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=19.6
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.-.+++|+|+|||-++-.++...+.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456799999999998887766654
No 233
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=57.32 E-value=5.8 Score=36.48 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=19.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
-.+++|+|+|||-++-.++...+.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 345689999999998888776664
No 234
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=56.79 E-value=7.4 Score=37.03 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=20.3
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEE
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVL 58 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl 58 (552)
++++++|+|||-++-.+... .+.+++++
T Consensus 8 vl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 45699999999998877665 45555544
No 235
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=56.62 E-value=4.9 Score=35.25 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.8
Q ss_pred CeecCCCCchhHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~ 49 (552)
++++|+|+|||-++-.+..
T Consensus 6 ~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 6 LTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHh
Confidence 4679999999998877765
No 236
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.36 E-value=7.2 Score=33.84 Aligned_cols=24 Identities=21% Similarity=0.056 Sum_probs=19.1
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+.+++|+|||-++-.+....+.+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 4 YLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEESCTTSCHHHHHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCC
Confidence 466899999999988877766644
No 237
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=56.27 E-value=12 Score=36.86 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=30.5
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
.++.++||+|||..++.++.. .+.++++++.- .-..|....+..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHH
Confidence 356699999999888776643 34678888764 456666666553
No 238
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=56.08 E-value=8.1 Score=36.24 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=25.6
Q ss_pred ccCeecCCCCchhHHHHHHHH---hcCCcEE-EEecCchhHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TVRKRAL-VLCNSGVSVEQWK 69 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~~~~~L-Il~Pt~~Lv~Qw~ 69 (552)
+-.+..|+|.|||..++.++. ..+.+++ +.+.+..-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 345569999999999887664 3455654 4444433444444
No 239
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=55.96 E-value=6.2 Score=36.30 Aligned_cols=25 Identities=12% Similarity=-0.144 Sum_probs=19.6
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
-.+++|+|+|||-++-.+....+.+
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCce
Confidence 3556899999999988887776643
No 240
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=55.43 E-value=6.8 Score=35.84 Aligned_cols=23 Identities=17% Similarity=-0.049 Sum_probs=18.6
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.+.+|+|+|||-++-.+....+.
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 46799999999998888776653
No 241
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=55.29 E-value=6.4 Score=36.64 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=19.3
Q ss_pred cCeecCCCCchhHHHHHHHHhcCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
-++++|+|+|||-++-.+....+.
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 455689999999999888877663
No 242
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.24 E-value=6.9 Score=35.34 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=18.1
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.+....+
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45669999999998877766654
No 243
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=55.00 E-value=5.8 Score=34.99 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=16.7
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRAL 56 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~L 56 (552)
.+.+++|+|||-++-.+....+.+++
T Consensus 9 ~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45689999999998888777776654
No 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=54.91 E-value=6.9 Score=34.64 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=17.3
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+.+|+|+|||-++-.+....+
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4679999999998887776543
No 245
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=54.83 E-value=5.4 Score=35.38 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=17.9
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.+....+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 34669999999999887776554
No 246
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=54.81 E-value=12 Score=44.05 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=32.4
Q ss_pred cCeecCCCCchhHHHHHHHHh------cCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT------VRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~------~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
+++.++.|+|||.+.+.-++. ...++|+|||.. +..+..+.+....
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q-~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ-MTFLMEYELAKTP 55 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG-GHHHHHHHHTCCS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccHHHHHHHHHhh
Confidence 468899999999987764432 136899999977 5555555565443
No 247
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.53 E-value=7.8 Score=38.40 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=20.8
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
...++++|+|+|||..+-+++...+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456788999999998887776655543
No 248
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=54.34 E-value=5.7 Score=35.46 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=18.0
Q ss_pred ccCeecCCCCchhHHHHHHHHh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
.-.+++|+|+|||.++-.+...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4567799999999998877766
No 249
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=54.07 E-value=5.6 Score=37.71 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=22.2
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
-++++|+|+|||-++-.+....+..++++..
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 3556899999999988877766544444433
No 250
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=53.82 E-value=4.2 Score=42.60 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=21.4
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHhc
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
..++.-++++|+|+|||.++-+++...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 355677899999999999988776543
No 251
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=53.51 E-value=7.7 Score=34.98 Aligned_cols=24 Identities=17% Similarity=-0.079 Sum_probs=18.3
Q ss_pred cCeecCCCCchhHHHHHHHHhcCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
-.+++|+|+|||-++-.++...+.
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 345699999999998777766653
No 252
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.19 E-value=7.8 Score=38.35 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=18.6
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
..++++|+|+|||..+-+++...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36888999999999888776543
No 253
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=52.78 E-value=13 Score=38.37 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=32.0
Q ss_pred CeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHHH-hhhCCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQFK-LWSTAD 79 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~~-~~~~~~ 79 (552)
++.+|+|+|||..++.++.. .+.+++++..- .-..|+...+. ...+++
T Consensus 204 ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 204 IIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-MPAAQLTLRMMCSEARID 256 (444)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-SCHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHHHcCCC
Confidence 56799999999888776542 35688887764 44566766653 334443
No 254
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=52.78 E-value=6.3 Score=36.28 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=19.3
Q ss_pred cCeecCCCCchhHHHHHHHHhcCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
-++++|+|+|||-++-.++...+.
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 345699999999999888777663
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=52.63 E-value=9.6 Score=38.18 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=26.8
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQW 68 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw 68 (552)
-.+.+|+|+|||..++.++. ..+.+++++.... ...++
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~-~~~~~ 104 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH-ALDPE 104 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-CCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CcCHH
Confidence 35679999999998887765 3467888887654 33444
No 256
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=52.55 E-value=10 Score=35.63 Aligned_cols=33 Identities=15% Similarity=-0.032 Sum_probs=25.8
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCch
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGV 63 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~ 63 (552)
+..+|+|+|||..++..+.+ .+.+++|+-|...
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 45689999999888877653 4678999998763
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=52.38 E-value=10 Score=38.37 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=27.4
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
++.+|+|+|||..++.++.. .+.+++++..-. ...+|.
T Consensus 78 ~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~-s~~~~~ 118 (366)
T 1xp8_A 78 EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH-ALDPVY 118 (366)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-CCCHHH
T ss_pred EEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC-ChhHHH
Confidence 45689999999988877653 456888887754 445553
No 258
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=52.26 E-value=8.6 Score=34.40 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=19.3
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
.+++|+|+|||-++-.+....+.+
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEECCCccCHHHHHHHHHHhcCCc
Confidence 467999999999988887766653
No 259
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=52.19 E-value=8.4 Score=35.31 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=17.9
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.+....+
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999988877766555
No 260
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.10 E-value=6.8 Score=38.66 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=28.3
Q ss_pred hccCeecCCCCchhHHHHHHHHhc------CCcEEEEecCc-hhHHHHHHHHHhh
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV------RKRALVLCNSG-VSVEQWKHQFKLW 75 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~------~~~~LIl~Pt~-~Lv~Qw~~e~~~~ 75 (552)
...++.+|+|+|||..+-+++... ...++-+-++. .-+..+.+.+..|
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence 347888999999998877665442 23455555443 1234444444433
No 261
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=51.62 E-value=12 Score=34.89 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=24.3
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCc
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSG 62 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~ 62 (552)
.++.+|.|+|||...+..+. ..+.+++|+-|..
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 35669999999977766654 3467899999965
No 262
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=51.60 E-value=15 Score=36.55 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=30.0
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
++.++||+|||..++.++.. .+.+++++..- .-..|....+.
T Consensus 50 iIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 50 IIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS-SCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHH
Confidence 45699999999888776543 56788888763 45566666553
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.47 E-value=10 Score=33.73 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=15.5
Q ss_pred CeecCCCCchhHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~ 50 (552)
.+++|+|+|||-++-.++..
T Consensus 6 ~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhcc
Confidence 46799999999877666543
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=51.37 E-value=9.1 Score=34.65 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=16.7
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++++|.|+|||-+.-.++....
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHCT
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 4679999999987766666544
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=51.16 E-value=11 Score=36.72 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=20.6
Q ss_pred ccCeecCCCCchhHHHHHHHH--h--cCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC--T--VRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~--~--~~~~~LIl~ 59 (552)
--.+++|+|+|||-++..++. . .+.+++++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 445679999999977665543 2 344666654
No 266
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=51.01 E-value=11 Score=33.45 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=18.9
Q ss_pred eecCCCCchhHHHHHHHHhc---CCcEEE
Q psy11640 32 KKKRPSAGKSLVGVTACCTV---RKRALV 57 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~---~~~~LI 57 (552)
+.+|.|+|||-++-.+.... +.+++.
T Consensus 5 l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999988776654 555543
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=50.81 E-value=9.6 Score=33.35 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=17.1
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.+....+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHhhC
Confidence 45669999999988776655443
No 268
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.77 E-value=5 Score=39.65 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=20.8
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
...-++++|+|+|||..+-++.....
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34578889999999999887776554
No 269
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=50.75 E-value=8.5 Score=42.83 Aligned_cols=28 Identities=18% Similarity=0.006 Sum_probs=21.8
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALV 57 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LI 57 (552)
-++++|||+|||.+|-++....+.+.+.
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l~~~~~~ 518 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence 5778999999999988877766555443
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=50.74 E-value=7 Score=35.72 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=16.2
Q ss_pred CeecCCCCchhHHHHHHHHhc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.+++|+|+|||-++-.++...
T Consensus 12 ~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 12 VLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEECCTTSCHHHHHHHHHHST
T ss_pred EEECcCCCCHHHHHHHHHhhC
Confidence 456999999998877666544
No 271
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.46 E-value=9.2 Score=37.96 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=18.1
Q ss_pred hccCeecCCCCchhHHHHHHHHhc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.-.++++|+|+|||..+-.++...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 345677999999998877766543
No 272
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=50.37 E-value=14 Score=34.25 Aligned_cols=32 Identities=6% Similarity=-0.023 Sum_probs=21.1
Q ss_pred cCeecCCCCchhHHHHHHH--H--hcCCcEEEEecC
Q psy11640 30 KKKKKRPSAGKSLVGVTAC--C--TVRKRALVLCNS 61 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i--~--~~~~~~LIl~Pt 61 (552)
-.+++|+|+|||..+-.++ . .....++++...
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 3467999999997765444 2 345566666553
No 273
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=50.21 E-value=8.7 Score=35.49 Aligned_cols=23 Identities=13% Similarity=-0.107 Sum_probs=18.3
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.+.+|+|+|||-++-.+....+.
T Consensus 4 ~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 45699999999998877766653
No 274
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.92 E-value=26 Score=42.61 Aligned_cols=80 Identities=9% Similarity=0.040 Sum_probs=49.1
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccCCCCCcEEEEccccc
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMI 107 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~~~~~~IvItTy~~l 107 (552)
.+..|.|+|||..|+.+++ ..+..++++.+--+|-..+ ++++ +++... ++|+-++.-
T Consensus 1435 ei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~-Gv~~~~----------------l~~~~p~~~ 1494 (1706)
T 3cmw_A 1435 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKL-GVDIDN----------------LLCSQPDTG 1494 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHT-TCCGGG----------------CEEECCSSH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHc-CCCHHH----------------eEEeCCCcH
Confidence 3568999999999888774 5678899999976665544 3333 232211 444444422
Q ss_pred ccccccchhHHHHHHHHhcCcccEEEEcc
Q psy11640 108 SHTQKRSWEADQTMQWLQNQEWGIMLLDD 136 (552)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~liIvDE 136 (552)
.. ..+..-..+.+..+++||+|.
T Consensus 1495 e~------~l~~~~~~~~s~~~~~vvvDs 1517 (1706)
T 3cmw_A 1495 EQ------ALEICDALARSGAVDVIVVDS 1517 (1706)
T ss_dssp HH------HHHHHHHHHHHTCCSEEEESC
T ss_pred HH------HHHHHHHHHHcCCCCEEEEcc
Confidence 10 011122345567899999993
No 275
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=49.90 E-value=7.5 Score=34.55 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=16.1
Q ss_pred cCeecCCCCchhHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~ 50 (552)
-.+++|+|+|||-.+-.++..
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 456799999999877666554
No 276
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=49.59 E-value=6.8 Score=35.67 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=17.4
Q ss_pred cCeecCCCCchhHHHHHHHHhc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-++++|+|+|||..+-.++...
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999998877666543
No 277
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=49.36 E-value=7.2 Score=36.72 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=19.5
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.-.+.+|+|+|||-++-.+....+.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456699999999998888766653
No 278
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=49.11 E-value=13 Score=44.07 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=35.5
Q ss_pred ccCeecCCCCchhHHHHHHHH----h-----cCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC----T-----VRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~----~-----~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
..++.++.|||||.+.+.-+. . ...++|+|++|...+....+.+...+
T Consensus 25 ~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 25 DILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 446679999999988765332 1 11379999999999888888877643
No 279
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=48.46 E-value=7.4 Score=37.62 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=18.8
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
..++++|+|+|||..+-.++...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 47888999999999887776543
No 280
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=48.11 E-value=11 Score=37.65 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=18.4
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-.++++|+|+|||..+-.++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999887776654
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=48.06 E-value=18 Score=37.46 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=28.8
Q ss_pred cCeecCCCCchhHHHHHHHHh----cCCcEEEEecCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT----VRKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~----~~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
.++.+|+|+|||..++.++.. .+.+++++..-- -..|+...+
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~-s~~~l~~r~ 251 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM-SAQQLVMRM 251 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS-CHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHH
Confidence 355699999999888776542 355888887643 345666554
No 282
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=47.98 E-value=11 Score=39.20 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=29.6
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
-++.++||+|||..++.++.. .+.++++++.- .-..|+...+.
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS-SCTTHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC-CCHHHHHHHHH
Confidence 356699999999988876643 35678887653 44556665554
No 283
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=47.35 E-value=11 Score=40.36 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=21.7
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
-++++|+|+|||..+-+++...+.+..-+
T Consensus 111 vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 56779999999998887776665554433
No 284
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=47.01 E-value=14 Score=32.53 Aligned_cols=27 Identities=7% Similarity=-0.109 Sum_probs=19.5
Q ss_pred CeecCCCCchhHHHHHHHHhc---CCcEEE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV---RKRALV 57 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~---~~~~LI 57 (552)
.+.+++|+|||-++-.+.... +.+++.
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 356899999999987777654 445443
No 285
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=46.86 E-value=15 Score=36.05 Aligned_cols=30 Identities=10% Similarity=-0.069 Sum_probs=20.4
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
-.++.|+|+|||-++..++. ..+++++++.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 44679999999977665543 2355666654
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=46.84 E-value=12 Score=33.44 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=16.6
Q ss_pred cCeecCCCCchhHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~ 50 (552)
-.++.|+|+|||-++-.+...
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 345689999999988777665
No 287
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=46.79 E-value=12 Score=33.90 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=22.0
Q ss_pred eecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQW 68 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw 68 (552)
+++++|||||.++-.+....+.+ +..+-.++.+.
T Consensus 17 ltG~~GSGKSTva~~L~~~lg~~---vid~D~~~~~~ 50 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNKYGAH---VVNVDRIGHEV 50 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCE---EEEHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCE---EEECcHHHHHH
Confidence 45899999999887776654533 33334454443
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.69 E-value=12 Score=33.76 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=17.2
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||-++-.++...+
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 44569999999988776665553
No 289
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=46.60 E-value=13 Score=34.03 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=22.7
Q ss_pred eecCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 32 KKKRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
+..++|-|||-.|+.++. ..+.+++|+--
T Consensus 33 v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 33 VFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp EEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 348999999999988765 45788998843
No 290
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.33 E-value=11 Score=41.89 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=17.9
Q ss_pred cCeecCCCCchhHHHHHHHHhc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-++++|||+|||.+|-++....
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6778999999999988776543
No 291
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=46.14 E-value=15 Score=32.21 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=19.3
Q ss_pred CeecCCCCchhHHHHHHHHhc---CCcEEEE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV---RKRALVL 58 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~---~~~~LIl 58 (552)
.+++++|+|||-++-.+.... +.+++.+
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 9 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 456999999998877666543 4455433
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=45.68 E-value=14 Score=38.17 Aligned_cols=31 Identities=19% Similarity=0.068 Sum_probs=22.0
Q ss_pred cCeecCCCCchhHHHHHHHH---hc-CCcEEEEec
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TV-RKRALVLCN 60 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~-~~~~LIl~P 60 (552)
-.++.++|+|||-++..++. .. +.+++++.-
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568999999988876654 33 667776653
No 293
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=45.52 E-value=17 Score=34.66 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=26.9
Q ss_pred cCeecCCCCchhHHHHHHHH--hc-----------CCcEEEEecCchhHHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACC--TV-----------RKRALVLCNSGVSVEQWKHQFKL 74 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~--~~-----------~~~~LIl~Pt~~Lv~Qw~~e~~~ 74 (552)
-.+++|+|+|||..+..++. .. ..+++++..-. ...+....+..
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~-~~~~~~~r~~~ 89 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED-PPTAIHHRLHA 89 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS-CHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC-CHHHHHHHHHH
Confidence 35779999999988776553 22 24666665533 33444444443
No 294
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=45.50 E-value=12 Score=33.76 Aligned_cols=21 Identities=10% Similarity=-0.020 Sum_probs=15.8
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+++|+|+|||-++-.+.. .+
T Consensus 6 ~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 6 GLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEECSTTSCHHHHHHHHHT-TT
T ss_pred EEECCCCCCHHHHHHHHHH-CC
Confidence 3569999999988766654 44
No 295
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=45.47 E-value=11 Score=42.46 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.9
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
+.-++++|+|+|||..+-+++...+.+.+.+-
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 45677899999999988877766666554443
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=45.24 E-value=9.6 Score=34.21 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=14.8
Q ss_pred CeecCCCCchhHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~ 50 (552)
.+++|+|+|||-++-.++..
T Consensus 11 ~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 11 IISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHhh
Confidence 45699999999776555543
No 297
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=45.06 E-value=13 Score=33.34 Aligned_cols=27 Identities=7% Similarity=-0.027 Sum_probs=20.0
Q ss_pred CeecCCCCchhHHHHHHHHhcC-CcEEE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR-KRALV 57 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~-~~~LI 57 (552)
.+.+|+|+|||-++-.+..... .+++.
T Consensus 8 ~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 8 VFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp EEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 4569999999999888777663 44443
No 298
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=45.05 E-value=14 Score=33.21 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.9
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+..|+|+|||.++-.+....+
T Consensus 6 ~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 6 TIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHhcC
Confidence 3568999999999887776666
No 299
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.04 E-value=10 Score=36.58 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=18.1
Q ss_pred ccCeecCCCCchhHHHHHHHHh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
..++++|+|+|||..+-.++..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3788899999999888776654
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.91 E-value=16 Score=36.13 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=20.5
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
-.++.|+|+|||-++..++. ..+++++++.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568999999977665543 3466777664
No 301
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=44.74 E-value=14 Score=35.59 Aligned_cols=42 Identities=17% Similarity=0.046 Sum_probs=25.2
Q ss_pred cCeecCCCCchhHHHHHHHHh---c-CCcEEEEecCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---V-RKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~-~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
-.+++|+|+|||..+..++.. . +.+++++.... -..|+...+
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~-~~~~~~~r~ 83 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE-SVEETAEDL 83 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS-CHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC-CHHHHHHHH
Confidence 356799999999876655432 2 34777776532 234444433
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=44.61 E-value=13 Score=33.34 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=16.3
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+++|+|+|||.++-.+.. .+
T Consensus 5 ~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEECTTSSHHHHHHHHHH-TT
T ss_pred EEECCCCcCHHHHHHHHHH-CC
Confidence 4678999999988776665 44
No 303
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=44.37 E-value=14 Score=34.68 Aligned_cols=24 Identities=17% Similarity=-0.060 Sum_probs=19.0
Q ss_pred CeecCCCCchhHHHHHHHHhcCCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
-+.+|+|+|||.++-.++...+-+
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCC
T ss_pred eeECCCCCCHHHHHHHHHHHhCCC
Confidence 356999999999998887766644
No 304
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=44.27 E-value=66 Score=29.88 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=45.3
Q ss_pred CCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc------ccccCCC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA------DTSFDLP 393 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~------~~GlDlp 393 (552)
+.++||.++++..+..+.+.+ .+..++|+.+..++...+ . ...+|+|+| ..+ ..++++.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A--KKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H--TCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c--CCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 457999999998877666544 345688888865554333 2 367899998 222 2457788
Q ss_pred CCCEEEE
Q psy11640 394 EANVLIQ 400 (552)
Q Consensus 394 ~a~~VI~ 400 (552)
.+++||+
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888877
No 305
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=44.27 E-value=12 Score=36.10 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=18.7
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
..++++|+|+|||..+-+++...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 57888999999999887776543
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=43.96 E-value=10 Score=42.89 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=18.4
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.-++++|||+|||.+|-++....
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999987776544
No 307
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=43.24 E-value=17 Score=36.29 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=22.1
Q ss_pred CeecCCCCchhHHHHHHHHhc---------CCcEEEEecC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV---------RKRALVLCNS 61 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~---------~~~~LIl~Pt 61 (552)
.+++|+|+|||..+..++... +++++++...
T Consensus 135 ~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 467999999998887776543 2466666653
No 308
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=43.19 E-value=9.6 Score=34.51 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=15.8
Q ss_pred hccCeecCCCCchhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
+.-.+++|+|+|||-..-.++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3556789999999966544443
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=43.15 E-value=11 Score=34.10 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=16.6
Q ss_pred CeecCCCCchhHHHHHHHHhc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.+++|+|+|||-++-.++...
T Consensus 16 ~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 16 VVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEECCTTSCHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 456999999998887776654
No 310
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=43.08 E-value=24 Score=37.25 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=23.7
Q ss_pred hccCeecCCCCchhHHHHHHHHh---cCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCT---VRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~P 60 (552)
+.-.++.++|+|||-++..++.. .+.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34556799999999887766643 3567777765
No 311
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=43.04 E-value=34 Score=33.37 Aligned_cols=24 Identities=4% Similarity=-0.263 Sum_probs=19.4
Q ss_pred hhhccCeecCCCCchhHHHHHHHH
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
+....+..+|+|+|||-.+.+++.
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788899999999988877664
No 312
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=42.59 E-value=9.5 Score=42.49 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=21.6
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHhc
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
+.++.-++++|+|+|||.++-+++...
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999987776553
No 313
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=42.44 E-value=45 Score=29.79 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=45.3
Q ss_pred CCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEEEc
Q psy11640 35 RPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILVTT 103 (552)
Q Consensus 35 pTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvItT 103 (552)
-....|....+.++...+.++||.|++..-+....+.+.... ..+..++|+.... .....|+|+|
T Consensus 37 ~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 37 VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKG----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp CCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred cChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 344567655555665667789999999999888888777542 4677888875321 1456788888
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=42.41 E-value=11 Score=33.72 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=15.2
Q ss_pred CeecCCCCchhHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~ 50 (552)
.+++|+|+|||-++-.+...
T Consensus 10 ~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 10 VLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEECSTTSCHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 46799999999877665543
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=42.38 E-value=11 Score=35.92 Aligned_cols=20 Identities=15% Similarity=-0.036 Sum_probs=14.4
Q ss_pred ccCeecCCCCchhHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTAC 48 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i 48 (552)
--.+++|||+|||-..-+++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 45678999999996544433
No 316
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=42.31 E-value=8.4 Score=37.87 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=21.8
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
...-.+++|+|+|||-..-.++....+.+++.+|
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~ 159 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFAN 159 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHHTCEEECGGG
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhcCceEEEEec
Confidence 3445678999999997665554433555554443
No 317
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=42.19 E-value=11 Score=39.78 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=20.9
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcC
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
...-++++|||+|||..|-++.....
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 35678889999999999887776553
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=41.55 E-value=18 Score=31.94 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=19.8
Q ss_pred cCeecCCCCchhHHHHHHHHhc---CCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV---RKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~---~~~~LIl 58 (552)
-.+++++|+|||-++-.+.... +.++.++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3456899999998887666533 4455554
No 319
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=41.51 E-value=16 Score=34.38 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=18.9
Q ss_pred ccCeecCCCCchhHHHHHHHHhcC
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.-.+++|+|+|||-++-.++...+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 345669999999998887776665
No 320
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=41.38 E-value=19 Score=32.38 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=18.8
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl 58 (552)
-.+++|+|+|||.++-.+... .+.++.++
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 345589999999877655543 24455444
No 321
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.30 E-value=8.5 Score=38.07 Aligned_cols=22 Identities=9% Similarity=-0.105 Sum_probs=17.6
Q ss_pred ccCeecCCCCchhHHHHHHHHh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
..++++|+|+|||..+-+++..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3778899999999887766653
No 322
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.80 E-value=14 Score=41.69 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=20.4
Q ss_pred hhhccCeecCCCCchhHHHHHHHHhc
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.++.-++++|+|+|||.++-.++...
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45567889999999999887776543
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.68 E-value=12 Score=34.05 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=15.5
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
..+++|+|+|||..+..++.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34679999999987766654
No 324
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=40.62 E-value=12 Score=38.59 Aligned_cols=30 Identities=7% Similarity=-0.025 Sum_probs=21.3
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLC 59 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~ 59 (552)
-.++.|+|+|||-.+..++.. .+.+++++.
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 446689999999887766543 346677665
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=40.45 E-value=13 Score=33.45 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=18.0
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.+.+|+|+|||-++-.+....+.
T Consensus 8 ~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHhh
Confidence 45689999999998877765543
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=40.14 E-value=13 Score=33.49 Aligned_cols=21 Identities=14% Similarity=0.049 Sum_probs=15.9
Q ss_pred CeecCCCCchhHHHHHHHHhc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.+++|+|+|||-++-.++...
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 356999999998877665543
No 327
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=40.13 E-value=12 Score=34.21 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=16.6
Q ss_pred cCeecCCCCchhHHHHHHHHhc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-.+++|+|+|||-+.-.++...
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 3567999999998777666543
No 328
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=39.93 E-value=17 Score=34.47 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=21.1
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
...-.+++|+|+|||-++-.++...+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 3455677999999999988777666543
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=39.69 E-value=13 Score=33.04 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=14.1
Q ss_pred CeecCCCCchhHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~ 49 (552)
.+++|+|+|||-+.=.++.
T Consensus 5 ~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 5 VISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEESSSSSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 3579999999977655543
No 330
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=39.48 E-value=20 Score=36.24 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=26.9
Q ss_pred hhhccCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVS 64 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~L 64 (552)
......+++|||+|||...-.++. ..+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 344678889999999976555443 345677777776543
No 331
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=39.39 E-value=66 Score=32.34 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=45.8
Q ss_pred hcCCeEEEEeccHHHHHHHHHH----cC-----CceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccccc-----ccCC
Q psy11640 328 RRGDKTIVFSDNVFALKHYAVK----MN-----KPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVADT-----SFDL 392 (552)
Q Consensus 328 ~~g~kvIVF~~~~~~~~~l~~~----L~-----~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~~~-----GlDl 392 (552)
..+.++||.++++..+...... ++ +..++|+.+..++..... ..+|+|+| ..+.. .+++
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~ivv~T~~~l~~~~~~~~~~~ 123 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKVIVATPQTIENDLLAGRISL 123 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH------HCSEEEECHHHHHHHHHTTSCCT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc------CCCEEEecHHHHHHHHhcCCcch
Confidence 4678999999998766655444 33 456889998877655432 35788887 33322 4567
Q ss_pred CCCCEEEE
Q psy11640 393 PEANVLIQ 400 (552)
Q Consensus 393 p~a~~VI~ 400 (552)
...++||+
T Consensus 124 ~~~~~vIi 131 (494)
T 1wp9_A 124 EDVSLIVF 131 (494)
T ss_dssp TSCSEEEE
T ss_pred hhceEEEE
Confidence 77888877
No 332
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=39.37 E-value=18 Score=34.05 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=18.7
Q ss_pred cCeecCCCCchhHHHHHHHHhcCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
-.+++|+|+|||-++-.++...+-
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 456799999999888777766654
No 333
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=39.11 E-value=66 Score=29.56 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=46.3
Q ss_pred cCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC-cc-----ccccCCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK-VA-----DTSFDLP 393 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~-v~-----~~GlDlp 393 (552)
.+.++||.+++++.+..+.+.+ .+..++|+.+..++...+. . ..+|+|+|. .+ ...+++.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R--GVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H--CCSEEEECHHHHHHHHHHTSCCCT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C--CCCEEEECHHHHHHHHHcCCCCcc
Confidence 4668999999998877665544 3456889988776655443 2 478999982 22 1245788
Q ss_pred CCCEEEE
Q psy11640 394 EANVLIQ 400 (552)
Q Consensus 394 ~a~~VI~ 400 (552)
.+++||+
T Consensus 176 ~~~~lVi 182 (242)
T 3fe2_A 176 RTTYLVL 182 (242)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 8888876
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=38.68 E-value=14 Score=33.35 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=16.3
Q ss_pred cCeecCCCCchhHHHHHHHHhc
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-.+++|+|+|||.++-.+....
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 3467999999998877665443
No 335
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=38.47 E-value=20 Score=34.50 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=19.4
Q ss_pred hhhhhhhhhHHHHHHHHHhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHH
Q psy11640 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
..|++..++|.|.+ ++||...-+=+.-|+|-+.+.-.+-.....+..|--|.++|++..+..++
T Consensus 167 ~d~k~~~k~krk~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~rs~Ll~air~g~~ 230 (279)
T 3p8c_D 167 QDTEDKRKEKRKQK--QKNLDRGGSGGSGGSGGSGGSGGSKRHPSTLPVISDARSVLLEAIRKGIQ 230 (279)
T ss_dssp HHHHHHHHHHHHHH--HTTCC-------------------------------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc--cccccCCCCCCCCCCCCCCCCCccccCCCCCCCccchHHHHHHHHHhcCc
Confidence 34444444443322 33334444445578888877666655555566788899999998887776
No 336
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=38.20 E-value=20 Score=34.97 Aligned_cols=31 Identities=13% Similarity=-0.090 Sum_probs=23.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhcCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTVRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~ 59 (552)
--++.+|.|+|||..+-.++.....+++++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 62 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLD 62 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 4566799999999888777766655566553
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=37.93 E-value=22 Score=33.37 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=18.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcCC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
-.+.+|+|+|||.+|-.+....+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 335589999999998877665553
No 338
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=37.91 E-value=11 Score=42.52 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.0
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKR 54 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~ 54 (552)
+..++++|+|+|||..+-+++...+.+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 456788999999999988777665443
No 339
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=37.76 E-value=87 Score=27.59 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=39.7
Q ss_pred CCCchhHHHHHHHHhc--CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEEEc
Q psy11640 36 PSAGKSLVGVTACCTV--RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILVTT 103 (552)
Q Consensus 36 TG~GKTl~ai~~i~~~--~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvItT 103 (552)
....|.-..+.++... ..++||.|++..-+....+.+... ...+..++|+.... .....|+|+|
T Consensus 28 ~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred CcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 3456655555555544 578999999998888777777653 24677888865321 1356788888
No 340
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=37.70 E-value=14 Score=33.45 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=14.6
Q ss_pred ccCeecCCCCchhHHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~ 49 (552)
.-.+++|+|+|||-.+-.++.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 334669999999976544443
No 341
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=37.58 E-value=13 Score=37.30 Aligned_cols=20 Identities=15% Similarity=-0.049 Sum_probs=14.5
Q ss_pred ccCeecCCCCchhHHHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVTAC 48 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i 48 (552)
--.+++|||+|||-..-+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45677999999996654443
No 342
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=37.57 E-value=19 Score=45.86 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=30.8
Q ss_pred hhccCeecCCCCchhHHHHHHHHhcCC-cEEEE-ecCchhHHHHHHHHHhhh
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTACCTVRK-RALVL-CNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i~~~~~-~~LIl-~Pt~~Lv~Qw~~e~~~~~ 76 (552)
.+.-+.++|||+|||..+-.++..... .++.+ +....-..+..+.+....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHB
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHh
Confidence 457788999999999988666665433 33322 222333455556665543
No 343
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=37.31 E-value=21 Score=31.77 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=18.6
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
.-.|.|||.+++.++. ..+.+++++=
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4578999999887654 4566777664
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=37.29 E-value=20 Score=32.33 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=15.2
Q ss_pred cCeecCCCCchhHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~ 50 (552)
-.+++|+|+|||-++-.+...
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 346699999999776555443
No 345
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=36.99 E-value=21 Score=32.34 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=18.1
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.++.|+|+|||.++-.+....+.
T Consensus 7 ~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 7 ALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHHhcCC
Confidence 45689999999998877766653
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=36.78 E-value=15 Score=32.22 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=14.8
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-.+++|+|+|||-+.-++..
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46789999999976544433
No 347
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=36.77 E-value=24 Score=34.39 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=20.6
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
.++.|+|+|||-++..++. ..+++++++.-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3568999999987665543 34667776654
No 348
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=36.73 E-value=23 Score=32.18 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=19.6
Q ss_pred CCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 35 RPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 35 pTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
-+|.|||.+++.++. ..+.+++++=|
T Consensus 10 kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 10 DTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 479999999887654 45678888654
No 349
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=36.70 E-value=20 Score=43.60 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=28.2
Q ss_pred cCeecCCCCchhHHHHHHHHh---cCCcEEEEecCchhHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT---VRKRALVLCNSGVSVEQWKH 70 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~Pt~~Lv~Qw~~ 70 (552)
-++..|+|+|||+.|.+++.. .+.++++|.-. ++..+...
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~-~~~~~~~~ 1127 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE-HALDPIYA 1127 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT-SCCCHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcc-cchHHHHH
Confidence 456799999999999988863 36678877754 33344433
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=36.55 E-value=21 Score=32.44 Aligned_cols=19 Identities=21% Similarity=0.045 Sum_probs=14.9
Q ss_pred CeecCCCCchhHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~ 49 (552)
.+++++|+|||.++-.+..
T Consensus 8 ~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 8 ALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4568999999988776654
No 351
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=36.42 E-value=14 Score=37.35 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=19.4
Q ss_pred ccCeecCCCCchhHHHHHHHH---hc-CCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC---TV-RKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~---~~-~~~~LIl~ 59 (552)
--.+++|||+|||-..-+++. .. .+.++++=
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 456789999999966544443 22 35555543
No 352
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=36.29 E-value=89 Score=27.96 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=45.3
Q ss_pred CCeEEEEeccHHHHHHHHHHc----------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc-----ccccCCC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM----------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA-----DTSFDLP 393 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L----------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~-----~~GlDlp 393 (552)
+.++||.++++..+..+.+.+ .+..++|+.+..++...+ .. +..+|+|+| ..+ ...+++.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~-~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KK-NCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HH-SCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hc-CCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 348999999988877665443 245678888876655444 32 457899998 222 2346778
Q ss_pred CCCEEEE
Q psy11640 394 EANVLIQ 400 (552)
Q Consensus 394 ~a~~VI~ 400 (552)
..++||+
T Consensus 158 ~~~~lVi 164 (220)
T 1t6n_A 158 HIKHFIL 164 (220)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 353
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=35.87 E-value=27 Score=32.95 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=30.8
Q ss_pred eecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
+.++.|+|||.++-.+....+-+ ++.|...+..+|.+.|-
T Consensus 6 ltG~~~sGK~tv~~~l~~~~g~~--~~~~~~~~~~~~~~~~g 45 (241)
T 1dek_A 6 LSGVKRSGKDTTADFIMSNYSAV--KYQLAGPIKDALAYAWG 45 (241)
T ss_dssp EECCTTSSHHHHHHHHHHHSCEE--ECCTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCe--EEecChHHHHHHHHHcc
Confidence 56899999999987776555533 58888888888887775
No 354
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=35.85 E-value=23 Score=35.90 Aligned_cols=33 Identities=15% Similarity=-0.000 Sum_probs=23.6
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
+.-.+++|+|+|||..+-+++....+.++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~ 202 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNL 202 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEECCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcEEEEec
Confidence 345677999999998877776666666655333
No 355
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=35.82 E-value=24 Score=32.01 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=23.7
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEEecCchhH
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSV 65 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv 65 (552)
.+..|+|+|||.++-.++..++-+.+ . .+++
T Consensus 10 ~i~g~~GsGk~ti~~~la~~lg~~~~---D-~~~~ 40 (201)
T 3fdi_A 10 AIGREFGSGGHLVAKKLAEHYNIPLY---S-KELL 40 (201)
T ss_dssp EEEECTTSSHHHHHHHHHHHTTCCEE---C-HHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHhCcCEE---C-HHHH
Confidence 34479999999999999888887743 4 5554
No 356
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=35.81 E-value=24 Score=34.70 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=19.2
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+..+|+|+|||..+..++....
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHHHHh
Confidence 78889999999999888776543
No 357
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=35.56 E-value=14 Score=32.55 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=12.6
Q ss_pred CeecCCCCchhHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVT 46 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~ 46 (552)
.+++|+|+|||-.+-.
T Consensus 13 ~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 13 VLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEECCTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4679999999976554
No 358
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=35.30 E-value=1.5e+02 Score=27.55 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=45.6
Q ss_pred cCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC--c---c--ccccCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK--V---A--DTSFDL 392 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~--v---~--~~GlDl 392 (552)
.+.++||.++++..+..+...+ .+..+.|+....+.... +.. .++|+|+|. + + ..++++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~--~~~Iiv~Tp~~l~~~~~~~~~~~~ 199 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGN--GINIIVATPGRLLDHMQNTPGFMY 199 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHH--CCSEEEECHHHHHHHHHHCTTCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcC--CCCEEEEcHHHHHHHHHccCCccc
Confidence 5778999999998887766655 23567888776554433 332 378999982 1 1 225778
Q ss_pred CCCCEEEE
Q psy11640 393 PEANVLIQ 400 (552)
Q Consensus 393 p~a~~VI~ 400 (552)
..+++||+
T Consensus 200 ~~l~~lVi 207 (262)
T 3ly5_A 200 KNLQCLVI 207 (262)
T ss_dssp TTCCEEEE
T ss_pred ccCCEEEE
Confidence 88888876
No 359
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=35.19 E-value=28 Score=33.79 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=19.8
Q ss_pred eecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 32 KKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
++.|+|+|||-.+..++. ..+++++++.
T Consensus 103 i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 569999999977665543 3456777665
No 360
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=35.12 E-value=17 Score=31.21 Aligned_cols=16 Identities=19% Similarity=0.000 Sum_probs=12.7
Q ss_pred cCeecCCCCchhHHHH
Q psy11640 30 KKKKKRPSAGKSLVGV 45 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai 45 (552)
-++++|+|+|||-+.-
T Consensus 26 ~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4678999999996633
No 361
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=35.07 E-value=23 Score=37.10 Aligned_cols=42 Identities=12% Similarity=-0.107 Sum_probs=29.5
Q ss_pred CeecCCCCchhHHHHHHHHhc----CCcEEEEecCchhHHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV----RKRALVLCNSGVSVEQWKHQFK 73 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~----~~~~LIl~Pt~~Lv~Qw~~e~~ 73 (552)
++.+|+|+|||..++.++... +.+++++.- ..-..|....+.
T Consensus 246 li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~~ 291 (503)
T 1q57_A 246 MVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDLI 291 (503)
T ss_dssp EEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHHH
T ss_pred EEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHH
Confidence 456899999999888776532 457888776 345566666553
No 362
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=35.06 E-value=15 Score=37.76 Aligned_cols=20 Identities=15% Similarity=-0.061 Sum_probs=14.7
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-++++|||+|||-..-+++.
T Consensus 170 i~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46779999999976554443
No 363
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=34.69 E-value=9.8 Score=34.11 Aligned_cols=28 Identities=43% Similarity=0.501 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHhhhccCeecCCCCchh
Q psy11640 14 KKKKKKKKKKKKKKKKKKKKKRPSAGKS 41 (552)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vlpTG~GKT 41 (552)
||++|+|+||+-|+-....--+++++++
T Consensus 6 ~~~~~~k~~~~~k~e~~~a~~ap~~~~~ 33 (196)
T 3dtp_E 6 KKEKKKKSKKKAEEEGGDAPAAPPAPKP 33 (196)
T ss_dssp HHHTTSHHHHSSHHHHTTSCCCCCCCSS
T ss_pred cccccccchhhhhcccCCCCCCCCCCCC
Confidence 4444444444445555555555555555
No 364
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=34.62 E-value=17 Score=36.03 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=18.5
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.++.+|+|+|||..+-.++....
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999998877766543
No 365
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.50 E-value=85 Score=36.27 Aligned_cols=85 Identities=12% Similarity=0.194 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHc-------C------CceEeCCCCHHHHHHHHHhhccCCCeeE
Q psy11640 313 PNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKM-------N------KPYIYGPTSQSERIQILQNFKLNPKVNT 379 (552)
Q Consensus 313 ~~K~~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~L-------~------~~~i~G~~~~~eR~~il~~F~~~g~~~v 379 (552)
.+|-....-++......+.++||.++++..+..+...+ + +..++|+++..++.+.++.++. ++|
T Consensus 82 SGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---~~I 158 (1054)
T 1gku_B 82 VGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---FKI 158 (1054)
T ss_dssp SCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---CSE
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---CCE
Confidence 45543223333333346789999999998877665544 2 3468899999888888888883 899
Q ss_pred EEEe-CccccccC-CCCCCEEEE
Q psy11640 380 IFVS-KVADTSFD-LPEANVLIQ 400 (552)
Q Consensus 380 Lv~T-~v~~~GlD-lp~a~~VI~ 400 (552)
+|+| ..+-.-+. +..+++||+
T Consensus 159 lV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 159 VITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp EEEEHHHHHHCSTTSCCCSEEEE
T ss_pred EEEcHHHHHHHHHHhccCCEEEE
Confidence 9998 22222222 567778876
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=34.44 E-value=32 Score=30.41 Aligned_cols=30 Identities=10% Similarity=-0.067 Sum_probs=20.0
Q ss_pred CeecCCCCchhHHHHHHHHh---cCCcEEEEec
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---VRKRALVLCN 60 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~P 60 (552)
.+++|.|+|||-.+..++.. .+.++-++..
T Consensus 8 ~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 8 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 45689999999877666543 3445555553
No 367
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=34.28 E-value=29 Score=33.82 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=19.1
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
.+++|+|+|||-..-.++. ..++.+++..
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999966544433 2356666664
No 368
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=34.26 E-value=24 Score=32.66 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=18.0
Q ss_pred cCeecCCCCchhHHHHHHHHhcC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
-.+++|+|+|||.++-.+....+
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 34669999999998877766565
No 369
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=34.09 E-value=14 Score=39.13 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=14.9
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-.+++|||+|||-..-+++.
T Consensus 263 i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56789999999966544443
No 370
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=33.95 E-value=49 Score=30.05 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=41.3
Q ss_pred cCCeEEEEeccHHHHHHHHHHc--------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc-----ccccCCCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM--------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA-----DTSFDLPE 394 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L--------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~-----~~GlDlp~ 394 (552)
.+.++||.+++++.+..+...+ .+..++|+.+..++.. .+.. ..+|+|+| ..+ ...+++..
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK--GVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS--CCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC--CCCEEEECHHHHHHHHHcCCcCccc
Confidence 5678999999998877766655 2345677766544433 3332 47899998 222 23567888
Q ss_pred CCEEEE
Q psy11640 395 ANVLIQ 400 (552)
Q Consensus 395 a~~VI~ 400 (552)
+++||+
T Consensus 168 ~~~lVi 173 (228)
T 3iuy_A 168 ITYLVI 173 (228)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 888876
No 371
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=33.65 E-value=78 Score=27.90 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=44.3
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC-cc-----ccccCCCCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK-VA-----DTSFDLPEA 395 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~-v~-----~~GlDlp~a 395 (552)
.+.++||.++++..+..+.+.+ .+..++|+.+..+....+. ...+|+|+|. .+ ...+++...
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL-----RGADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH-----HCCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh-----CCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 4668999999988877766655 3456788877544433332 1468999982 21 124667788
Q ss_pred CEEEE
Q psy11640 396 NVLIQ 400 (552)
Q Consensus 396 ~~VI~ 400 (552)
++||+
T Consensus 146 ~~iVi 150 (207)
T 2gxq_A 146 EVAVL 150 (207)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88877
No 372
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=33.65 E-value=26 Score=32.64 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=18.9
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
.-.|.|||.+++.++. ..+.++|+|=
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 10 GKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999998887654 4567777753
No 373
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=33.13 E-value=13 Score=34.24 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=9.8
Q ss_pred CeecCCCCchhHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTAC 48 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i 48 (552)
.+++|+|+|||-++-.++
T Consensus 31 ~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 31 VLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEECSCC----CHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 457999999997765554
No 374
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=33.09 E-value=19 Score=33.56 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=18.5
Q ss_pred hccCeecCCCCchhHHHHHHHHhcC
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
..-.+++|+|+|||-++-.++...+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456779999999988776665544
No 375
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=32.87 E-value=73 Score=28.96 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=42.1
Q ss_pred cCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc----cc--ccCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA----DT--SFDL 392 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~----~~--GlDl 392 (552)
.+.++||.++++..+..+.+.+ .+..++|+.+..+....+ ...+|+|+| ..+ .. .+++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~iiv~Tp~~l~~~l~~~~~~~~ 169 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI------NNINILVCTPGRLLQHMDETVSFHA 169 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH------TTCSEEEECHHHHHHHHHHCSSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC------CCCCEEEECHHHHHHHHHhcCCccc
Confidence 5678999999988877766554 245578877654443332 257899998 222 12 3677
Q ss_pred CCCCEEEE
Q psy11640 393 PEANVLIQ 400 (552)
Q Consensus 393 p~a~~VI~ 400 (552)
...++||+
T Consensus 170 ~~~~~lVi 177 (236)
T 2pl3_A 170 TDLQMLVL 177 (236)
T ss_dssp TTCCEEEE
T ss_pred ccccEEEE
Confidence 77877776
No 376
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=32.86 E-value=17 Score=36.47 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=16.0
Q ss_pred hccCeecCCCCchhHHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
..-.+++|||+|||-..-+++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4556779999999976555544
No 377
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=32.75 E-value=71 Score=29.03 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=44.8
Q ss_pred cCCeEEEEeccHHHHHHHHHHc----------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc-----ccccCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM----------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA-----DTSFDL 392 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L----------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~-----~~GlDl 392 (552)
.+.++||.+++++.+..+.+.+ .+..++|+.+..++...+ + ..+|+|+| ..+ ...+++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---KCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---SCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---CCCEEEECHHHHHHHHhcCCccc
Confidence 4569999999988877766544 235678888876654433 2 47899998 322 234667
Q ss_pred CCCCEEEE
Q psy11640 393 PEANVLIQ 400 (552)
Q Consensus 393 p~a~~VI~ 400 (552)
..+++||+
T Consensus 165 ~~~~~lVi 172 (230)
T 2oxc_A 165 GSIRLFIL 172 (230)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEe
Confidence 77787776
No 378
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=32.50 E-value=31 Score=33.66 Aligned_cols=31 Identities=10% Similarity=-0.034 Sum_probs=19.3
Q ss_pred ccCeecCCCCchhHHHHHHHH--h-cCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACC--T-VRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~--~-~~~~~LIl~ 59 (552)
--.+++|+|+|||-..-.++. . .++++++..
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 344679999999966544432 2 245666554
No 379
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=32.24 E-value=21 Score=32.82 Aligned_cols=20 Identities=10% Similarity=-0.158 Sum_probs=14.3
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-.+++|+|+|||-..=.++.
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45679999999966544443
No 380
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=32.21 E-value=30 Score=31.71 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=19.6
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
.-.|.|||.+++.++. ..+.+++++=.
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4579999998887654 44667877753
No 381
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=32.15 E-value=32 Score=35.39 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=20.1
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
.++.|.|+|||.++..++. ..+++++++.
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 3568999999987766554 2356676665
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=31.84 E-value=21 Score=32.05 Aligned_cols=20 Identities=15% Similarity=-0.104 Sum_probs=16.1
Q ss_pred CeecCCCCchhHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~ 50 (552)
.+.+++|+|||-++-.+...
T Consensus 14 ~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 45699999999998777654
No 383
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=31.65 E-value=28 Score=33.41 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=16.4
Q ss_pred CeecCCCCchhHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~ 50 (552)
++++|+|+|||-++-.+...
T Consensus 6 ~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 6 LTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 56799999999988777654
No 384
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=31.63 E-value=16 Score=33.08 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=18.6
Q ss_pred HhhhccCeecCCCCchhHHHHHHHH
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
++.-+-++++|+|+|||-..-.++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455677889999999977665554
No 385
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=31.61 E-value=12 Score=33.18 Aligned_cols=20 Identities=10% Similarity=-0.042 Sum_probs=15.0
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-.++.|+|+|||..+-.++.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35789999999977655554
No 386
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=31.55 E-value=26 Score=33.67 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=16.0
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+++|+|+|||-++-.+. ..+
T Consensus 79 ~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 79 GLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEECTTSCHHHHHHHHH-HHT
T ss_pred EEECCCCCCHHHHHHHHH-HCC
Confidence 455899999998887666 444
No 387
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=31.49 E-value=31 Score=32.18 Aligned_cols=31 Identities=6% Similarity=-0.161 Sum_probs=21.7
Q ss_pred ccCeecCCCCchhHHHHHHHHh--cCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT--VRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~--~~~~~LIl~ 59 (552)
-..++.+.|+|||-.+..++.. .+.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3456699999999887766533 356777765
No 388
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=31.25 E-value=28 Score=31.97 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=18.6
Q ss_pred cCCCCchhHHHHHHHH---hc-CCcEEEEe
Q psy11640 34 KRPSAGKSLVGVTACC---TV-RKRALVLC 59 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~-~~~~LIl~ 59 (552)
.--|.|||.+++.++. .. +.++|+|=
T Consensus 12 ~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 12 AKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp SSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 4579999999887664 34 66777663
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.23 E-value=37 Score=33.55 Aligned_cols=30 Identities=7% Similarity=-0.116 Sum_probs=18.8
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
-.+++|+|+|||-..-.++. ..++.+++..
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35679999999965443332 2345666554
No 390
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=31.15 E-value=64 Score=33.03 Aligned_cols=52 Identities=4% Similarity=-0.008 Sum_probs=38.6
Q ss_pred HHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------CCCCcEEEEc
Q psy11640 48 CCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------PMGCGILVTT 103 (552)
Q Consensus 48 i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~~~~~IvItT 103 (552)
+...++++||.||++.-++...+.+... ...+..++|+.++. ....+|+|+|
T Consensus 173 l~~~~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT 230 (440)
T 1yks_A 173 ILADKRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILAT 230 (440)
T ss_dssp HHHCCSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEES
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEEC
Confidence 3345678999999999998888888765 24688888855432 1457899999
No 391
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=31.12 E-value=22 Score=31.55 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=14.5
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-.+++|.|+|||-..-.++.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999976544443
No 392
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=31.07 E-value=22 Score=32.12 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=15.4
Q ss_pred cCCeEEEEeccHHHHHHHHHHc
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM 350 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L 350 (552)
.+.-+|+.+++...+..++..+
T Consensus 177 ~g~tvi~vtHdl~~~~~~~d~i 198 (207)
T 1znw_A 177 GDFDKVVVNRRLESACAELVSL 198 (207)
T ss_dssp GGSSEEEECSSHHHHHHHHHHH
T ss_pred ccCcEEEECCCHHHHHHHHHHH
Confidence 4556777777778887776654
No 393
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=31.02 E-value=31 Score=32.41 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=19.0
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
.-.|.|||.+++.++. ..+.++|+|=
T Consensus 26 ~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 26 GKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5679999998877654 4466777753
No 394
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=30.99 E-value=20 Score=32.96 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=19.0
Q ss_pred ecCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 33 KKRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 33 vlpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
...-|.|||.+++.++. ..+.++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45678999999887765 345677766
No 395
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=30.83 E-value=21 Score=32.16 Aligned_cols=21 Identities=19% Similarity=-0.032 Sum_probs=16.4
Q ss_pred cCeecCCCCchhHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~ 50 (552)
-.+++|+|+|||-++-.+...
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 345699999999988777654
No 396
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=30.45 E-value=1.4e+02 Score=24.11 Aligned_cols=100 Identities=6% Similarity=0.045 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHH--cCCceEeCCCCH-HHHHHHHHhhccCCCeeEEEEeCcccccc--C
Q psy11640 317 RATQYLIAYHERRGDKTIVFSDNVFALKHYAVK--MNKPYIYGPTSQ-SERIQILQNFKLNPKVNTIFVSKVADTSF--D 391 (552)
Q Consensus 317 ~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~--L~~~~i~G~~~~-~eR~~il~~F~~~g~~~vLv~T~v~~~Gl--D 391 (552)
..+..++.. .|..+..+....+.++.+... ..+.+++-.++. ..-.++++..+..+.+.+++.|.-.+... .
T Consensus 19 ~~l~~~L~~---~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~ 95 (140)
T 3h5i_A 19 KTIANILNK---YGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEK 95 (140)
T ss_dssp HHHHHHHHH---TTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGG
T ss_pred HHHHHHHHH---cCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHH
Confidence 344444443 356666555555555555431 234455544432 22334444444335667777764333221 1
Q ss_pred CCCCCEEEEeccCCCChhhHHHHhhhccc
Q psy11640 392 LPEANVLIQISSHGGSRRQEAQRLGRILR 420 (552)
Q Consensus 392 lp~a~~VI~~~~~~~s~~q~~Qr~GRi~R 420 (552)
.-.+...-++. -|.++..+.+++.++.+
T Consensus 96 ~~~~g~~~~l~-KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 96 IRSVTAYGYVM-KSATEQVLITIVEMALR 123 (140)
T ss_dssp GGGSCEEEEEE-TTCCHHHHHHHHHHHHH
T ss_pred HHhCCCcEEEe-CCCCHHHHHHHHHHHHH
Confidence 11222333344 35667777776666655
No 397
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=29.84 E-value=21 Score=32.05 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=17.0
Q ss_pred HhhhccCeecCCCCchhHHHHHHHH
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~ 49 (552)
++.-|-++++++|+|||-..-.++.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456778889999999976555543
No 398
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=29.83 E-value=31 Score=32.40 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=18.2
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
..-|.|||.+++.++. ..+.++|+|
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5679999998877654 346677774
No 399
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=29.81 E-value=29 Score=38.42 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=20.0
Q ss_pred hhhccCeecCCCCchhHHHHHHHHh
Q psy11640 26 KKKKKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 26 ~~~~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
.++.-++++|+|+|||.++-+++..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 4566788999999999988766653
No 400
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=29.75 E-value=17 Score=39.29 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=18.1
Q ss_pred ccCeecCCCCchhHHHHHHHHhc
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.-++++|||+|||..|-++....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 57888999999998877655444
No 401
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=29.68 E-value=32 Score=33.17 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=18.5
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
.--|.|||.+++.++. ..+.++|+|
T Consensus 48 ~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 48 GKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 6778999998877654 456777766
No 402
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=29.59 E-value=35 Score=33.41 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=20.6
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
...|.|||.+|..++. ..++++|+|-.
T Consensus 21 gKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 21 GKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 7899999998877654 45678877654
No 403
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=29.36 E-value=35 Score=32.57 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=17.7
Q ss_pred CCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 35 RPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 35 pTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
-.|.|||.+++.++. ..++++|+|
T Consensus 91 kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 91 APGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 369999998876654 456777776
No 404
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=29.33 E-value=64 Score=32.78 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=21.7
Q ss_pred CeecCCCCchhHHHHHHHHh---------cCCcEEEEecCc
Q psy11640 31 KKKKRPSAGKSLVGVTACCT---------VRKRALVLCNSG 62 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~---------~~~~~LIl~Pt~ 62 (552)
.+++|+|+|||..+..++.. ...+++++....
T Consensus 182 ~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 182 ELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 35799999999888755432 134577776543
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.06 E-value=39 Score=33.84 Aligned_cols=30 Identities=10% Similarity=-0.059 Sum_probs=19.4
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
-.+++|+|+|||-..-.++. ..++.+++..
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 34679999999966544433 2355666654
No 406
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=28.95 E-value=38 Score=32.90 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=13.7
Q ss_pred eecCCCCchhHHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~ 49 (552)
+++|.|+|||-++-.+..
T Consensus 85 I~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 458999999977655544
No 407
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=28.86 E-value=1.2e+02 Score=29.61 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCeEEEEeccHHHHHHHHHHc----------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc-----ccccCCC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM----------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA-----DTSFDLP 393 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L----------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~-----~~GlDlp 393 (552)
+.++||.++++..+..+...+ .+..++|+.+..+....+. . +..+|+|+| ..+ ...+++.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---K-NCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---H-SCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcccc
Confidence 558999999988877665543 3456889888766655443 2 457899998 332 2346778
Q ss_pred CCCEEEE
Q psy11640 394 EANVLIQ 400 (552)
Q Consensus 394 ~a~~VI~ 400 (552)
..++||+
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888877
No 408
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=28.71 E-value=23 Score=35.49 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=11.9
Q ss_pred cCeecCCCCchhHH
Q psy11640 30 KKKKKRPSAGKSLV 43 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ 43 (552)
-++++|||+|||.+
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36789999999976
No 409
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.44 E-value=25 Score=34.04 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=14.2
Q ss_pred CeecCCCCchhHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~ 49 (552)
.+++|+|+|||-.+-.+..
T Consensus 35 ~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 35 FFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3568999999987755543
No 410
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=28.39 E-value=35 Score=32.54 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=18.3
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
...|.|||.+++.++. ..+.++|+|
T Consensus 9 ~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 9 GKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5679999998877654 456677765
No 411
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=28.32 E-value=48 Score=31.62 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=17.8
Q ss_pred CCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 35 RPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 35 pTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
--|.|||.+++.++. ..+.++|+|
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 569999998877654 456777774
No 412
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=28.12 E-value=36 Score=32.96 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=17.9
Q ss_pred CCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 36 PSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 36 TG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
.|.|||.+++.++. ..++++|+|=
T Consensus 114 gG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 69999998876654 4567887773
No 413
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=27.78 E-value=39 Score=33.58 Aligned_cols=27 Identities=7% Similarity=0.212 Sum_probs=20.3
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
...|.|||.+|.+++. ..++++|+|--
T Consensus 33 gKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 33 GKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp CSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 7899999998877654 45677777663
No 414
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=27.62 E-value=41 Score=31.33 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=19.5
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
...|.|||.+++.++. ..+.+++++=
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 10 GKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5679999998887654 4467887775
No 415
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=27.23 E-value=1e+02 Score=31.33 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=46.2
Q ss_pred CCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe--Cc---ccc-ccCCCC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS--KV---ADT-SFDLPE 394 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T--~v---~~~-GlDlp~ 394 (552)
+.++||.+++++.+..+...+ .+..++|+.+..++...+ . ..++|+|+| .+ +.. .+++..
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~--~~~~Ivv~Tp~~l~~~l~~~~~~l~~ 203 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---T--RGCHVVIATPGRLLDFVDRTFITFED 203 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T--TCCSEEEECHHHHHHHHHTTSCCCTT
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h--cCCCEEEEChHHHHHHHHhCCccccc
Confidence 458999999998888776554 356789999876554433 3 258899998 22 222 356778
Q ss_pred CCEEEE
Q psy11640 395 ANVLIQ 400 (552)
Q Consensus 395 a~~VI~ 400 (552)
+++||+
T Consensus 204 ~~~lVl 209 (434)
T 2db3_A 204 TRFVVL 209 (434)
T ss_dssp CCEEEE
T ss_pred CCeEEE
Confidence 888877
No 416
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=27.13 E-value=28 Score=34.84 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.5
Q ss_pred ccCe--ecCCCCchhHHHHHHHHh
Q psy11640 29 KKKK--KKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 29 ~~~~--vlpTG~GKTl~ai~~i~~ 50 (552)
-.++ ++|+|+|||..+-.++..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHH
Confidence 3455 699999999887766643
No 417
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=27.12 E-value=38 Score=36.22 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=21.8
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
+.....|.|||.++..++. ..+.++|+|--
T Consensus 12 ~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 12 FFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3447889999998877654 45778887654
No 418
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=27.06 E-value=30 Score=32.37 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=18.5
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
.-.|.|||.+++.++. ..+.++|+|
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 4568999998887654 456788776
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=26.94 E-value=23 Score=36.18 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=17.1
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
++++|+|+|||-++-.++...+
T Consensus 262 il~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 262 VAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp EEESCTTSSHHHHHHHHTGGGT
T ss_pred EEECCCCCCHHHHHHHHHHhcC
Confidence 4569999999998887765553
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=26.92 E-value=27 Score=31.65 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=15.5
Q ss_pred CeecCCCCchhHHHHHHHHh
Q psy11640 31 KKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~ 50 (552)
.+++++|+|||-++-.+...
T Consensus 29 ~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45699999999887766553
No 421
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=26.86 E-value=1.1e+02 Score=27.98 Aligned_cols=66 Identities=8% Similarity=0.106 Sum_probs=43.9
Q ss_pred CCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc-----ccccCCCC
Q psy11640 330 GDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA-----DTSFDLPE 394 (552)
Q Consensus 330 g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~-----~~GlDlp~ 394 (552)
+.++||.+++++.+..+...+ .+..++|+.+..+... ... ...+|+|+| ..+ ...+++..
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 174 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQ--MGCHLLVATPGRLVDFIEKNKISLEF 174 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHS--SCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhC--CCCCEEEECHHHHHHHHHcCCCChhh
Confidence 458999999998887766554 2345778776554433 233 367899998 222 22467788
Q ss_pred CCEEEE
Q psy11640 395 ANVLIQ 400 (552)
Q Consensus 395 a~~VI~ 400 (552)
+++||+
T Consensus 175 ~~~lVi 180 (253)
T 1wrb_A 175 CKYIVL 180 (253)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888876
No 422
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=26.85 E-value=39 Score=32.25 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=18.1
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
.-.|.|||.+++.++. ..+.++|+|
T Consensus 12 ~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4579999999887654 446677764
No 423
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=26.63 E-value=37 Score=30.76 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=22.8
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE-e-cCchhHHHHHHH
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL-C-NSGVSVEQWKHQ 71 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl-~-Pt~~Lv~Qw~~e 71 (552)
.-.|.|||.+++.++. ..+ +++++ + |.. -..+|...
T Consensus 8 ~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~-~~~~~~~~ 48 (209)
T 3cwq_A 8 FKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR-SATGWGKR 48 (209)
T ss_dssp SSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC-HHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC-CHHHHhcC
Confidence 5679999998887654 345 77774 2 443 33456543
No 424
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.47 E-value=1.3e+02 Score=24.27 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=34.6
Q ss_pred EEEEeccHHHHHHHHHHc---C--CceEeCCCCHHHHHHHHHhhcc
Q psy11640 333 TIVFSDNVFALKHYAVKM---N--KPYIYGPTSQSERIQILQNFKL 373 (552)
Q Consensus 333 vIVF~~~~~~~~~l~~~L---~--~~~i~G~~~~~eR~~il~~F~~ 373 (552)
.+||+...+.+..+.+.+ | +..++++.....|.+-++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 578999999999888877 3 4678999999999999999985
No 425
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=26.37 E-value=22 Score=35.16 Aligned_cols=21 Identities=14% Similarity=-0.034 Sum_probs=15.0
Q ss_pred hccCeecCCCCchhHHHHHHH
Q psy11640 28 KKKKKKKRPSAGKSLVGVTAC 48 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i 48 (552)
.--.+++|||+|||-..-+++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 355678999999996544443
No 426
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=26.27 E-value=48 Score=32.58 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=13.4
Q ss_pred eecCCCCchhHHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~ 49 (552)
+.+|+|+|||-.+-.+..
T Consensus 97 I~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 449999999977655443
No 427
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=26.10 E-value=38 Score=31.74 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=17.7
Q ss_pred cCCCCchhHHHHHHHHh--cCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACCT--VRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~~--~~~~~LIl 58 (552)
.--|.|||.+++.++.. .+.++|+|
T Consensus 35 ~kGGvGKTT~a~~LA~~la~g~~Vlli 61 (267)
T 3k9g_A 35 IKGGVGKSTSAIILATLLSKNNKVLLI 61 (267)
T ss_dssp SSSSSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHCCCCEEEE
Confidence 56789999988766542 45667665
No 428
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=25.97 E-value=30 Score=32.17 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=15.1
Q ss_pred CeecCCCCchhHHHHHHHHhc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~ 51 (552)
-+++|.|+|||-++-.++...
T Consensus 29 gI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 29 GVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 356999999998766555433
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=25.93 E-value=65 Score=33.86 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=27.1
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQF 72 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~ 72 (552)
-.++.|+|+|||..+..++. ..+.+++++++-. ...|....+
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee-~~~~l~~~~ 328 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEE-SRAQLLRNA 328 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS-CHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC-CHHHHHHHH
Confidence 45679999999987666553 2345677777743 344554444
No 430
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=25.89 E-value=98 Score=33.12 Aligned_cols=72 Identities=8% Similarity=0.149 Sum_probs=52.5
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhc-cCCCeeEEEEeC-cc----------ccccC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFK-LNPKVNTIFVSK-VA----------DTSFD 391 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~-~~g~~~vLv~T~-v~----------~~GlD 391 (552)
.+.++||.++++..+......| .+..++|+++..++..++..+. .++..+++++|. .+ ...++
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 4569999999998887766665 3567899999999999988883 236899999983 22 12234
Q ss_pred CCCCCEEEE
Q psy11640 392 LPEANVLIQ 400 (552)
Q Consensus 392 lp~a~~VI~ 400 (552)
+...++||+
T Consensus 163 ~~~i~~iVi 171 (591)
T 2v1x_A 163 ARRFTRIAV 171 (591)
T ss_dssp TTCEEEEEE
T ss_pred ccCCcEEEE
Confidence 556677766
No 431
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=25.73 E-value=40 Score=32.90 Aligned_cols=32 Identities=16% Similarity=-0.040 Sum_probs=22.3
Q ss_pred cCeecCCCCchhHHHHHHHHh-cCCcEEEEecC
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT-VRKRALVLCNS 61 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~-~~~~~LIl~Pt 61 (552)
-++++|.|+|||-..-.++.. .+.++.|+.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 357799999999654444432 35678888885
No 432
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=25.70 E-value=96 Score=32.55 Aligned_cols=71 Identities=7% Similarity=0.184 Sum_probs=52.4
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-----CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe--Cccc----cccCCCCCCE
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-----NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS--KVAD----TSFDLPEANV 397 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-----~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T--~v~~----~GlDlp~a~~ 397 (552)
.+.++||.++.+..+......| .+..++|+.+..++..++..+.. +..+++++| .+.. ..++....++
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~-~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~ 142 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRT-GQIRLLYIAPERLMLDNFLEHLAHWNPVL 142 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH-TCCSEEEECHHHHTSTTHHHHHTTSCEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHhChHHHHHHhhCCCCE
Confidence 3568999999998888776665 34568899999999999999986 789999997 2221 2244455666
Q ss_pred EEE
Q psy11640 398 LIQ 400 (552)
Q Consensus 398 VI~ 400 (552)
||+
T Consensus 143 vVi 145 (523)
T 1oyw_A 143 LAV 145 (523)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 433
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=25.57 E-value=49 Score=32.80 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=21.2
Q ss_pred ccCeecCCCCchhHHHHHHHHh---cCCcEEEEe
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT---VRKRALVLC 59 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~---~~~~~LIl~ 59 (552)
.-.+++++|+|||-.+..++.. .+.+++++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4456799999999877666543 355665554
No 434
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=25.34 E-value=1.5e+02 Score=25.13 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=42.3
Q ss_pred CchhHHHHHHHHh-cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEEEcccc
Q psy11640 38 AGKSLVGVTACCT-VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILVTTYSM 106 (552)
Q Consensus 38 ~GKTl~ai~~i~~-~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvItTy~~ 106 (552)
..|......++.. ...++||.|++..-+....+.+.... ..+..++|+.... .....|+|+| +.
T Consensus 20 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-~~ 94 (163)
T 2hjv_A 20 ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG----YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DV 94 (163)
T ss_dssp GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GG
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-Ch
Confidence 3454443344443 45689999999998888887777542 4678888875321 1446788988 44
Q ss_pred c
Q psy11640 107 I 107 (552)
Q Consensus 107 l 107 (552)
+
T Consensus 95 ~ 95 (163)
T 2hjv_A 95 A 95 (163)
T ss_dssp G
T ss_pred h
Confidence 4
No 435
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=25.22 E-value=71 Score=32.59 Aligned_cols=52 Identities=8% Similarity=0.009 Sum_probs=39.2
Q ss_pred HHhcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC------CCCCcEEEEc
Q psy11640 48 CCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK------PMGCGILVTT 103 (552)
Q Consensus 48 i~~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~------~~~~~IvItT 103 (552)
+....+++||.||++.-++...+.+... ...+..++|..++. ....+|+|+|
T Consensus 167 l~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 167 ITEFDGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp HHSCSSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred HHcCCCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 3445678999999999988888888765 25788899875432 1457899999
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=24.98 E-value=32 Score=30.83 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=17.5
Q ss_pred cCeecCCCCchhHHHHHHHHh
Q psy11640 30 KKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~ 50 (552)
-++.+|.|+|||-.|+.++.+
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 356799999999999988863
No 437
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.97 E-value=40 Score=43.60 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred HhhhccCeecCCCCchhHHHHHHHHhcCCcEEEEecCch
Q psy11640 25 KKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGV 63 (552)
Q Consensus 25 ~~~~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~ 63 (552)
+..+.-++++|||+|||..+..++.......++-++-++
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~ 1340 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSS 1340 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCT
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeC
No 438
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=24.91 E-value=43 Score=32.23 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.4
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
.-.|.|||.+++.++. ..++++|+|
T Consensus 100 ~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 100 VSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp SSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 3569999999887654 446778777
No 439
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=24.91 E-value=1.5e+02 Score=25.49 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=42.5
Q ss_pred CchhHHHHHHHHhc-CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEEEcccc
Q psy11640 38 AGKSLVGVTACCTV-RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILVTTYSM 106 (552)
Q Consensus 38 ~GKTl~ai~~i~~~-~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvItTy~~ 106 (552)
..|......++... ..++||.|++..-+....+.+.... ..+..++|+.... .....|+|+| +.
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-~~ 90 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NL 90 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC----CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-Cc
Confidence 34554444444443 4689999999998888787777642 4677888875321 1456788888 44
Q ss_pred c
Q psy11640 107 I 107 (552)
Q Consensus 107 l 107 (552)
+
T Consensus 91 ~ 91 (172)
T 1t5i_A 91 F 91 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 440
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=24.84 E-value=17 Score=32.75 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=16.3
Q ss_pred CeecCCCCchhHHHHHHHHhc
Q psy11640 31 KKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~ 51 (552)
.+++|+|+|||-++-.++...
T Consensus 4 ~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 357999999998877766544
No 441
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.79 E-value=32 Score=31.13 Aligned_cols=18 Identities=17% Similarity=-0.027 Sum_probs=13.6
Q ss_pred ccCeecCCCCchhHHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGVT 46 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~ 46 (552)
--++++|+|+|||-+.-+
T Consensus 25 ~~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 346789999999966433
No 442
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=24.77 E-value=45 Score=32.79 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=19.9
Q ss_pred ecCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 33 KKRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 33 vlpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
....|.|||.++..++. ..+.++|+|-
T Consensus 25 sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 25 GGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp ECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred eCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 37889999998877654 4567787764
No 443
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=24.62 E-value=82 Score=27.26 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=35.0
Q ss_pred CCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEEEc
Q psy11640 52 RKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILVTT 103 (552)
Q Consensus 52 ~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvItT 103 (552)
.+++||.|+++..+......+... ...+..++|+.... .....|+|+|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 468999999998888777777653 24678888875321 1456889988
No 444
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=24.61 E-value=1.5e+02 Score=25.84 Aligned_cols=67 Identities=7% Similarity=0.044 Sum_probs=43.6
Q ss_pred cCCeEEEEeccHHHHHHHHHHc----------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC-cc----c-cccCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM----------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK-VA----D-TSFDL 392 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L----------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~-v~----~-~GlDl 392 (552)
.+.++||.++++..+..+.+.+ .+..++|+.+..+.. ..+. +..+|+|+|. .+ . ..+++
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~--~~~~i~v~T~~~l~~~~~~~~~~~ 144 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD--DTVHVVIATPGRILDLIKKGVAKV 144 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT--SCCSEEEECHHHHHHHHHTTCSCC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC--CCCCEEEeCHHHHHHHHHcCCcCc
Confidence 3458999999988877765544 234578888765443 2333 3678999983 22 2 23467
Q ss_pred CCCCEEEE
Q psy11640 393 PEANVLIQ 400 (552)
Q Consensus 393 p~a~~VI~ 400 (552)
...++||+
T Consensus 145 ~~~~~lVi 152 (206)
T 1vec_A 145 DHVQMIVL 152 (206)
T ss_dssp TTCCEEEE
T ss_pred ccCCEEEE
Confidence 77888776
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=24.37 E-value=45 Score=31.45 Aligned_cols=22 Identities=14% Similarity=-0.068 Sum_probs=16.2
Q ss_pred hhccCeecCCCCchhHHHHHHH
Q psy11640 27 KKKKKKKKRPSAGKSLVGVTAC 48 (552)
Q Consensus 27 ~~~~~~vlpTG~GKTl~ai~~i 48 (552)
.-+-++++++|+|||-..-.++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4466778999999996655444
No 446
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=24.27 E-value=50 Score=30.56 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=16.4
Q ss_pred CCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 35 RPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 35 pTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
-||.|||.++..++. ..+.++.+.
T Consensus 13 ~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 13 DTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 479999999887765 334455444
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=23.78 E-value=30 Score=37.27 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.4
Q ss_pred hccCeecCCCCchhHHHHHHHHhc
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTV 51 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~ 51 (552)
...++++|+|+|||..+-+++...
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 577888999999999887776543
No 448
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=23.74 E-value=1.7e+02 Score=24.77 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=39.9
Q ss_pred hhHHHHHHHHh-cCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEEEc
Q psy11640 40 KSLVGVTACCT-VRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILVTT 103 (552)
Q Consensus 40 KTl~ai~~i~~-~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvItT 103 (552)
|.-....++.. ...++||.|++..-+......+... ...+..++|+.... .....|+|+|
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 44443344443 3578999999998888777777653 24677888875321 1456788888
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=23.51 E-value=36 Score=31.47 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=16.8
Q ss_pred CeecCCCCchhHHHHHHHHhcC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVR 52 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~ 52 (552)
.+.+|.|+|||-++-.+.....
T Consensus 30 ~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 30 TFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 3459999999998877766543
No 450
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=23.51 E-value=43 Score=41.39 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=29.2
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWK 69 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~ 69 (552)
-+++.|+|+|||..|+.++. ..+.+++++.- .+++++..
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT-TSCCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc-cccHHHHH
Confidence 45679999999999888765 45678888765 45666655
No 451
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.45 E-value=1.3e+02 Score=24.02 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEeccHHHH-HHHHHH-cCCceEeCCCCHHHHHHHHHhhcc---CCCeeEEEEeCccccc--
Q psy11640 317 RATQYLIAYHERRGDKTIVFSDNVFAL-KHYAVK-MNKPYIYGPTSQSERIQILQNFKL---NPKVNTIFVSKVADTS-- 389 (552)
Q Consensus 317 ~~l~~Ll~~~~~~g~kvIVF~~~~~~~-~~l~~~-L~~~~i~G~~~~~eR~~il~~F~~---~g~~~vLv~T~v~~~G-- 389 (552)
..+..++... .|..++..+.+...+ +.+... ..+.+++-.++..+-.++++..+. .+.+.+++.|.-.+..
T Consensus 22 ~~l~~~L~~~--~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~ 99 (143)
T 3cnb_A 22 DMLTQFLENL--FPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNV 99 (143)
T ss_dssp HHHHHHHHHH--CTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHH
T ss_pred HHHHHHHHhc--cCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHH
Confidence 3445555542 466634444444443 433332 244556665554444555666553 2467777776433321
Q ss_pred ---cCCCCCCEEEEeccCCCChhhHHHHhhhccccCC
Q psy11640 390 ---FDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 390 ---lDlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
+..- ++-+ +. .|.++..+.+++.++.+...
T Consensus 100 ~~~~~~g-~~~~--l~-kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 100 SRIVALG-AETC--FG-KPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp HHHHHTT-CSEE--EE-SSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcEE--Ee-CCCCHHHHHHHHHHHHHhhc
Confidence 2222 2222 23 36677778888877766444
No 452
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=23.30 E-value=97 Score=28.29 Aligned_cols=68 Identities=6% Similarity=0.058 Sum_probs=37.6
Q ss_pred cCCeEEEEeccHHHHHHHHHHc-------C--CceEeCCCCHHHHHHHHHhhccCCCeeEEEEeC-----ccc-cccCCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM-------N--KPYIYGPTSQSERIQILQNFKLNPKVNTIFVSK-----VAD-TSFDLP 393 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L-------~--~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T~-----v~~-~GlDlp 393 (552)
.+.++||.++++..+..+.+.+ + +..++|+.+..+ ....+.. +..+++|+|. .+. ..+++.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~-~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQA-EAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-----------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhc-CCCCEEEECHHHHHHHHHhCCcCcc
Confidence 4569999999998887766655 1 234566654332 2334443 5688999982 222 236677
Q ss_pred CCCEEEE
Q psy11640 394 EANVLIQ 400 (552)
Q Consensus 394 ~a~~VI~ 400 (552)
..++||+
T Consensus 173 ~~~~lVi 179 (237)
T 3bor_A 173 WIKMFVL 179 (237)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 7887776
No 453
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=23.12 E-value=52 Score=30.35 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=17.6
Q ss_pred CeecCCCCchhHHHHHHHHhcCC
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRK 53 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~ 53 (552)
.+.++.|+|||-++-.+......
T Consensus 6 ~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 6 SIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEcCCCCCHHHHHHHHHHHcCC
Confidence 34589999999988777766644
No 454
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.99 E-value=38 Score=30.39 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=12.6
Q ss_pred CeecCCCCchhHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTA 47 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~ 47 (552)
.++.|+|+|||-..-.+
T Consensus 5 ~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp EEESCCSSCHHHHHHHH
T ss_pred EEECCCCChHHHHHHHH
Confidence 46799999999654333
No 455
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=22.88 E-value=2.4e+02 Score=25.17 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=42.6
Q ss_pred CCchhHHHHHHHH-hcCCcEEEEecCchhHHHHHHHHHhhhCCCCCcEEEEecCcccC----------CCCCcEEEEc
Q psy11640 37 SAGKSLVGVTACC-TVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK----------PMGCGILVTT 103 (552)
Q Consensus 37 G~GKTl~ai~~i~-~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~~~~~~~I~~~~g~~~~~----------~~~~~IvItT 103 (552)
-..|.-+...++. ...+++||.|++..-++...+.+.... ..+..++|+.... .....|+|+|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG----HPAQALHGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 3456544444444 346799999999988887777776542 4677888875321 2456799998
No 456
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=22.85 E-value=73 Score=28.60 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=37.8
Q ss_pred cCCeEEEEeccHHHHHHHHHHc---------CCceEeCCCCHHHHHHHHHhhccCCCeeEEEEe-Ccc-----ccccCCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVKM---------NKPYIYGPTSQSERIQILQNFKLNPKVNTIFVS-KVA-----DTSFDLP 393 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~L---------~~~~i~G~~~~~eR~~il~~F~~~g~~~vLv~T-~v~-----~~GlDlp 393 (552)
.+.++||.++++..+..+.+.+ .+..++|+.+..+... .+. ..+|+|+| ..+ ...+++.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR---DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT---TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC---CCCEEEECHHHHHHHHHhCCcchh
Confidence 4569999999988877666544 2345777776544332 222 37899998 222 3356677
Q ss_pred CCCEEEE
Q psy11640 394 EANVLIQ 400 (552)
Q Consensus 394 ~a~~VI~ 400 (552)
..++||+
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7787776
No 457
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=22.55 E-value=37 Score=33.18 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=12.6
Q ss_pred eecCCCCchhHHHHHHH
Q psy11640 32 KKKRPSAGKSLVGVTAC 48 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i 48 (552)
+++|+|+|||-.+-.+.
T Consensus 95 I~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCchHHHHHHHHH
Confidence 55899999997654443
No 458
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=22.52 E-value=52 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=20.4
Q ss_pred ccCee-cCCCCchhHHHHHHH---HhcCCcEEEE
Q psy11640 29 KKKKK-KRPSAGKSLVGVTAC---CTVRKRALVL 58 (552)
Q Consensus 29 ~~~~v-lpTG~GKTl~ai~~i---~~~~~~~LIl 58 (552)
|-++| .-=|-|||-+++.++ +..++++|+|
T Consensus 49 KVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 33334 456899999987654 3567788776
No 459
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=22.41 E-value=58 Score=30.54 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=19.2
Q ss_pred ccCeec--CCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 29 KKKKKK--RPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 29 ~~~~vl--pTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
+.+.|. -||.|||.+++.++. ..+.++.+.
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 344443 478999999887765 334455554
No 460
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=22.34 E-value=39 Score=31.07 Aligned_cols=19 Identities=21% Similarity=-0.015 Sum_probs=13.9
Q ss_pred CeecCCCCchhHHHHHHHH
Q psy11640 31 KKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~ 49 (552)
.+++|.|+|||-..=.++.
T Consensus 20 ~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4679999999976544443
No 461
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=22.24 E-value=61 Score=34.03 Aligned_cols=29 Identities=10% Similarity=-0.082 Sum_probs=19.1
Q ss_pred cCeecCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 30 KKKKKRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
-.+++|+|+|||-..-.++. ..++.+++.
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 34679999999966544433 235677776
No 462
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=22.24 E-value=37 Score=33.49 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=13.1
Q ss_pred cCeecCCCCchhHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVT 46 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~ 46 (552)
-.+++|+|+|||-+.=+
T Consensus 26 ~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35789999999976433
No 463
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=22.22 E-value=49 Score=33.30 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=17.8
Q ss_pred cCCCCchhHHHHHHHHh---------cCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACCT---------VRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~~---------~~~~~LIl 58 (552)
.--|.|||.+++.++.. .+.++|+|
T Consensus 116 ~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 116 LKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp SSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 56789999988776542 35677665
No 464
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.03 E-value=1.4e+02 Score=22.62 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHH-cCCceEeCCCCHHHHHHHHHhhccC---CCeeEEEEeCccccccCC
Q psy11640 317 RATQYLIAYHERRGDKTIVFSDNVFALKHYAVK-MNKPYIYGPTSQSERIQILQNFKLN---PKVNTIFVSKVADTSFDL 392 (552)
Q Consensus 317 ~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~-L~~~~i~G~~~~~eR~~il~~F~~~---g~~~vLv~T~v~~~GlDl 392 (552)
..+..++.. .|..+..+....+.++.+... ..+..++-.++...-.++++..+.. +.+.+++.|...... ..
T Consensus 15 ~~l~~~l~~---~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~-~~ 90 (119)
T 2j48_A 15 TVVCEMLTA---AGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD-PL 90 (119)
T ss_dssp HHHHHHHHH---TTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS-HH
T ss_pred HHHHHHHHh---CCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch-hh
Confidence 344444442 466666555444444444443 2445566555443344555555432 467777776433322 11
Q ss_pred CCCCEEEEeccCCCChhhHHHHhhhccc
Q psy11640 393 PEANVLIQISSHGGSRRQEAQRLGRILR 420 (552)
Q Consensus 393 p~a~~VI~~~~~~~s~~q~~Qr~GRi~R 420 (552)
-.+...-++. .|.++.++.+++.++.+
T Consensus 91 ~~~g~~~~l~-kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 91 LTAQASAILS-KPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp HHHHCSEECS-SCSTTHHHHHHHHTTCC
T ss_pred hhcCHHHhcc-CCCCHHHHHHHHHHHhc
Confidence 1111111234 36677777888877655
No 465
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=21.73 E-value=60 Score=29.84 Aligned_cols=28 Identities=7% Similarity=-0.041 Sum_probs=20.1
Q ss_pred ecCCCCchhHHHHHHHHhcCCcEE-EEec
Q psy11640 33 KKRPSAGKSLVGVTACCTVRKRAL-VLCN 60 (552)
Q Consensus 33 vlpTG~GKTl~ai~~i~~~~~~~L-Il~P 60 (552)
.+|.|+|||-++-.+.......+. +--|
T Consensus 11 eG~~g~GKst~~~~l~~~l~~~~~~~~ep 39 (216)
T 3tmk_A 11 EGLDRTGKTTQCNILYKKLQPNCKLLKFP 39 (216)
T ss_dssp EECSSSSHHHHHHHHHHHHCSSEEEEESS
T ss_pred ECCCCCCHHHHHHHHHHHhcccceEEEec
Confidence 399999999998887776665433 3345
No 466
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=21.51 E-value=37 Score=33.99 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=11.7
Q ss_pred cCeecCCCCchhHH
Q psy11640 30 KKKKKRPSAGKSLV 43 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ 43 (552)
-++++|+|+|||-.
T Consensus 26 ~~i~G~NGaGKTTl 39 (365)
T 3qf7_A 26 TVVEGPNGAGKSSL 39 (365)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999955
No 467
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=21.41 E-value=41 Score=33.53 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=18.6
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEE
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVL 58 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl 58 (552)
.--|.|||.+++.++. ..+.++|+|
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 4568999998876653 556788876
No 468
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=21.36 E-value=44 Score=29.59 Aligned_cols=20 Identities=10% Similarity=-0.104 Sum_probs=14.6
Q ss_pred cCeecCCCCchhHHHHHHHH
Q psy11640 30 KKKKKRPSAGKSLVGVTACC 49 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~ 49 (552)
-.+++|.|+|||-..-.++.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 45679999999976555544
No 469
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=21.28 E-value=87 Score=29.73 Aligned_cols=45 Identities=4% Similarity=-0.079 Sum_probs=30.2
Q ss_pred CeecCCCCchhHHHHHHHH---hcCCcEEEEecCchhHHHHHHHHHhhh
Q psy11640 31 KKKKRPSAGKSLVGVTACC---TVRKRALVLCNSGVSVEQWKHQFKLWS 76 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~---~~~~~~LIl~Pt~~Lv~Qw~~e~~~~~ 76 (552)
++...||+|||..++..+. ..+.++++++-. +-..|..+.++.|.
T Consensus 25 li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 25 IHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp EEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred EEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 3445888888876666554 456788887764 45677777777653
No 470
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=21.08 E-value=40 Score=30.73 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=12.9
Q ss_pred ccCeecCCCCchhHHHH
Q psy11640 29 KKKKKKRPSAGKSLVGV 45 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai 45 (552)
.-.+++|.|+|||...-
T Consensus 24 ~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp EEEEECCTTSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44577999999996543
No 471
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=21.00 E-value=58 Score=31.39 Aligned_cols=29 Identities=10% Similarity=-0.091 Sum_probs=21.1
Q ss_pred hccCeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 28 KKKKKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 28 ~~~~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
+-.++++|.|+|||..+-.++...+ ++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~ 60 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILI 60 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEE
Confidence 4566779999999988777766653 4444
No 472
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=20.63 E-value=56 Score=32.63 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=22.8
Q ss_pred hhccCee--cCCCCchhHHHHHHHH---hcCCcEEEEe
Q psy11640 27 KKKKKKK--KRPSAGKSLVGVTACC---TVRKRALVLC 59 (552)
Q Consensus 27 ~~~~~~v--lpTG~GKTl~ai~~i~---~~~~~~LIl~ 59 (552)
+-|.++| .--|.|||.+|+.++. ..+.++|+|=
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3344444 4789999998877654 4577888875
No 473
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=20.62 E-value=59 Score=30.01 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=23.6
Q ss_pred eecCCCCchhHHHHHHHHhcCCcEEEEecCchhHHH
Q psy11640 32 KKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQ 67 (552)
Q Consensus 32 ~vlpTG~GKTl~ai~~i~~~~~~~LIl~Pt~~Lv~Q 67 (552)
+..+.|+|||.+|-.++...+-++ +. ..++.+
T Consensus 19 i~g~~gsGk~~i~~~la~~lg~~~---~d-~~~~~~ 50 (223)
T 3hdt_A 19 IEREYGSGGRIVGKKLAEELGIHF---YD-DDILKL 50 (223)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCEE---EC-HHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHcCCcE---Ec-HHHHHH
Confidence 448999999999998888887653 34 455554
No 474
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=20.45 E-value=45 Score=30.66 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=16.9
Q ss_pred CeecCCCCchhHHHHHHHHhcCCcEEEE
Q psy11640 31 KKKKRPSAGKSLVGVTACCTVRKRALVL 58 (552)
Q Consensus 31 ~~vlpTG~GKTl~ai~~i~~~~~~~LIl 58 (552)
.+++|.|+|||-++-.+... .+.+++.
T Consensus 24 ~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 24 LIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 35599999999765444333 4444443
No 475
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.35 E-value=48 Score=42.32 Aligned_cols=31 Identities=10% Similarity=-0.084 Sum_probs=24.8
Q ss_pred cCeecCCCCchhHHHHHHHHhcCCcEEEEec
Q psy11640 30 KKKKKRPSAGKSLVGVTACCTVRKRALVLCN 60 (552)
Q Consensus 30 ~~~vlpTG~GKTl~ai~~i~~~~~~~LIl~P 60 (552)
....+|+|+|||.++-.++...+.+++++--
T Consensus 648 ~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc 678 (2695)
T 4akg_A 648 GCFFGPAGTGKTETVKAFGQNLGRVVVVFNC 678 (2695)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTCCCEEEET
T ss_pred CcccCCCCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 4567999999999998888888877766643
No 476
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=20.14 E-value=64 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.6
Q ss_pred cCCCCchhHHHHHHHH---hcCCcEEEEec
Q psy11640 34 KRPSAGKSLVGVTACC---TVRKRALVLCN 60 (552)
Q Consensus 34 lpTG~GKTl~ai~~i~---~~~~~~LIl~P 60 (552)
..-|.|||.++..++. ..++++|+|--
T Consensus 23 gkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 23 GKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp CSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 6789999998887664 34567766653
No 477
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.13 E-value=1.4e+02 Score=23.94 Aligned_cols=103 Identities=11% Similarity=0.068 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHH-cCCceEeCCCCHHHHHHHHHhhcc---CCCeeEEEEeCcccccc--
Q psy11640 317 RATQYLIAYHERRGDKTIVFSDNVFALKHYAVK-MNKPYIYGPTSQSERIQILQNFKL---NPKVNTIFVSKVADTSF-- 390 (552)
Q Consensus 317 ~~l~~Ll~~~~~~g~kvIVF~~~~~~~~~l~~~-L~~~~i~G~~~~~eR~~il~~F~~---~g~~~vLv~T~v~~~Gl-- 390 (552)
..+..++.. .|..+..+.+..+.++.+... ..+..++-.++...-.++++.++. .+.+.+++.|.......
T Consensus 20 ~~l~~~l~~---~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~ 96 (140)
T 3grc_A 20 RLLNLMLEK---GGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELE 96 (140)
T ss_dssp HHHHHHHHH---TTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHH
T ss_pred HHHHHHHHH---CCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHH
Confidence 344555543 455654444444444444332 134455555554444555665553 24677777764432211
Q ss_pred -CCCCCCEEEEeccCCCChhhHHHHhhhccccCC
Q psy11640 391 -DLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 423 (552)
Q Consensus 391 -Dlp~a~~VI~~~~~~~s~~q~~Qr~GRi~R~~~ 423 (552)
..-.+...-++. -|.++..+.+++.++.+...
T Consensus 97 ~~~~~~g~~~~l~-kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 97 FNSQPLAVSTWLE-KPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp HCCTTTCCCEEEC-SSCCHHHHHHHHHHHHHHHC
T ss_pred HHhhhcCCCEEEe-CCCCHHHHHHHHHHHHHhcC
Confidence 222222222334 36677777777777766443
No 478
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=20.10 E-value=2.9e+02 Score=20.91 Aligned_cols=90 Identities=8% Similarity=0.050 Sum_probs=39.8
Q ss_pred cCCeEEEEeccHHHHHHHHHH-cCCceEeCCCCHHHHHHHHHhhcc-CCCeeEEEEeCccccccCCCCCCEEEEeccCCC
Q psy11640 329 RGDKTIVFSDNVFALKHYAVK-MNKPYIYGPTSQSERIQILQNFKL-NPKVNTIFVSKVADTSFDLPEANVLIQISSHGG 406 (552)
Q Consensus 329 ~g~kvIVF~~~~~~~~~l~~~-L~~~~i~G~~~~~eR~~il~~F~~-~g~~~vLv~T~v~~~GlDlp~a~~VI~~~~~~~ 406 (552)
.|..+..+.+..+.++.+... ..+..++-.++...-.++++.++. .+.+.+++.|.........-.+...-++. -|.
T Consensus 24 ~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~g~~~~l~-Kp~ 102 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDMSSWAADEYVV-KSF 102 (116)
T ss_dssp TTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGGGCGGGGGSSEEEE-CCS
T ss_pred CCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchHHHHHhccccceEE-CCC
Confidence 355555443333333433332 133445544443333344544432 24667777764333222221111111223 356
Q ss_pred ChhhHHHHhhhcc
Q psy11640 407 SRRQEAQRLGRIL 419 (552)
Q Consensus 407 s~~q~~Qr~GRi~ 419 (552)
++.+..+++.++.
T Consensus 103 ~~~~l~~~i~~~~ 115 (116)
T 3a10_A 103 NFDELKEKVKKLL 115 (116)
T ss_dssp STHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 6777777776654
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=20.01 E-value=44 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.1
Q ss_pred ccCeecCCCCchhHHHHHHHHh
Q psy11640 29 KKKKKKRPSAGKSLVGVTACCT 50 (552)
Q Consensus 29 ~~~~vlpTG~GKTl~ai~~i~~ 50 (552)
.-.+++|+|+|||.++-.++..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999988766543
Done!