Your job contains 1 sequence.
>psy11640
MGFRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCN
SGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGCGILVTTYSMISHTQKRSWEADQT
MQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWV
APNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSHCKLG
LTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLVC
KTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTS
QSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILR
AKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYS
TRDEQGQLLQQVLAASETDADEERVAGEVGGVSGGFKRSGGTMASLSGADDAVYHESRFS
NVKHPLFKKFRG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11640
(552 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0001179 - symbol:hay "haywire" species:7227 "Droso... 1400 1.4e-194 2
RGD|1307139 - symbol:Ercc3 "excision repair cross-complem... 1339 8.1e-179 2
UNIPROTKB|P19447 - symbol:ERCC3 "TFIIH basal transcriptio... 1337 1.7e-178 2
UNIPROTKB|Q60HG1 - symbol:ERCC3 "TFIIH basal transcriptio... 1337 1.7e-178 2
UNIPROTKB|Q5RA62 - symbol:ERCC3 "TFIIH basal transcriptio... 1337 1.7e-178 2
UNIPROTKB|G3V1S1 - symbol:ERCC3 "Excision repair cross-co... 1337 1.7e-178 2
UNIPROTKB|Q1RMT1 - symbol:ERCC3 "TFIIH basal transcriptio... 1336 1.7e-178 2
UNIPROTKB|E2RN68 - symbol:ERCC3 "Uncharacterized protein"... 1335 2.1e-178 2
UNIPROTKB|F1RXZ5 - symbol:ERCC3 "Uncharacterized protein"... 1333 3.5e-178 2
MGI|MGI:95414 - symbol:Ercc3 "excision repair cross-compl... 1335 5.7e-178 2
UNIPROTKB|F1NDN0 - symbol:ERCC3 "TFIIH basal transcriptio... 1325 2.8e-176 2
UNIPROTKB|F1NZ23 - symbol:ERCC3 "TFIIH basal transcriptio... 1301 9.6e-174 2
UNIPROTKB|Q5ZKK7 - symbol:ERCC3 "TFIIH basal transcriptio... 1293 6.7e-173 2
ZFIN|ZDB-GENE-030131-3043 - symbol:ercc3 "excision repair... 1262 4.8e-170 2
WB|WBGene00013441 - symbol:Y66D12A.15 species:6239 "Caeno... 1186 2.8e-150 2
CGD|CAL0005155 - symbol:orf19.2857 species:5476 "Candida ... 992 1.0e-124 2
DICTYBASE|DDB_G0278729 - symbol:repB "transcription facto... 960 4.5e-124 2
SGD|S000001405 - symbol:SSL2 "Component of RNA polymerase... 992 7.2e-124 2
TAIR|locus:2177891 - symbol:XPB2 "homolog of Xeroderma pi... 957 1.2e-123 2
POMBASE|SPAC17A5.06 - symbol:ptr8 "transcription factor T... 972 1.1e-122 2
TAIR|locus:2177901 - symbol:XPB1 "homolog of xeroderma pi... 940 5.1e-121 2
ASPGD|ASPL0000009371 - symbol:AN8201 species:162425 "Emer... 990 1.4e-116 2
GENEDB_PFALCIPARUM|PF10_0369 - symbol:PF10_0369 "helicase... 744 3.8e-91 2
UNIPROTKB|Q8IJ31 - symbol:PF10_0369 "DNA repair helicase ... 744 3.8e-91 2
UNIPROTKB|O53873 - symbol:ercc3 "PROBABLE DNA HELICASE ER... 416 3.3e-49 2
>FB|FBgn0001179 [details] [associations]
symbol:hay "haywire" species:7227 "Drosophila melanogaster"
[GO:0008344 "adult locomotory behavior" evidence=IMP] [GO:0004386
"helicase activity" evidence=ISS] [GO:0009411 "response to UV"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=ISS] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS;IDA] [GO:0001111
"promoter clearance from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC;NAS;IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009411 EMBL:AE014296 GO:GO:0003677 GO:GO:0008344
GO:GO:0004003 GO:GO:0004386 GO:GO:0006367 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0005675
GO:GO:0000381 eggNOG:COG1061 GeneTree:ENSGT00390000002204 KO:K10843
TIGRFAMs:TIGR00603 EMBL:S50517 EMBL:X68309 EMBL:L02965
EMBL:AY051975 EMBL:BT025199 PIR:A44223 RefSeq:NP_001137931.1
RefSeq:NP_524020.2 UniGene:Dm.5750 ProteinModelPortal:Q02870
SMR:Q02870 IntAct:Q02870 STRING:Q02870 PaxDb:Q02870 PRIDE:Q02870
EnsemblMetazoa:FBtr0076253 EnsemblMetazoa:FBtr0114599 GeneID:39202
KEGG:dme:Dmel_CG8019 UCSC:CG8019-RA CTD:39202 FlyBase:FBgn0001179
InParanoid:Q02870 OMA:SKINVIC OrthoDB:EOG4KKWHX PhylomeDB:Q02870
GenomeRNAi:39202 NextBio:812457 Bgee:Q02870 GermOnline:CG8019
Uniprot:Q02870
Length = 798
Score = 1400 (497.9 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 270/343 (78%), Positives = 301/343 (87%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQK+
Sbjct: 456 LDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKK 515
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IARVQCAEVWCPMSPEFYREYL KTSK++LLYVMNP+K+R+ Q+LI YHE+RGDKTI
Sbjct: 516 GYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEQRGDKTI 575
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALKHYA+KMNKP+IYGPTSQ+ERIQILQNFK N KVNTIFVSKVADTSFDLPE
Sbjct: 576 VFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPE 635
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF
Sbjct: 636 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 695
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L+NQGYSYKVIT L GM+ + + Y T++EQGQLLQ VL+AS+ D ++E++ GE
Sbjct: 696 LVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPS 755
Query: 515 XXXXXXXT---MASLSGADDAVYHESRFSNVK--HPLFKKFRG 552
++S+SG DDA+Y+E R N+ HPLFKKFRG
Sbjct: 756 GSGGAVRRVGGLSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRG 798
Score = 507 (183.5 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 93/106 (87%), Positives = 100/106 (94%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTACCTVRKRALVLCNSGVSVEQWK QFK+WSTADDSMICRFTSEAKDKPMGC
Sbjct: 360 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGC 419
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
GILVTTYSMI+HTQKRSWEA+QTM+WLQ QEWGIM+LD+ + AK
Sbjct: 420 GILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAK 465
Score = 364 (133.2 bits), Expect = 1.9e-179, Sum P(2) = 1.9e-179
Identities = 64/101 (63%), Positives = 79/101 (78%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+G+P AA KN E +D + DE+GAKDYR+QM L+PDH +RPLWVAPNGH+FLESFSPVY
Sbjct: 44 EGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSPVY 103
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
+HAHDFLIAI+EPVCRPEHIHE ++ V +Q+H
Sbjct: 104 KHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTH 144
>RGD|1307139 [details] [associations]
symbol:Ercc3 "excision repair cross-complementing rodent repair
deficiency, complementation group 3" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0000441
"SSL2-core TFIIH complex" evidence=IDA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding"
evidence=IEA;ISO] [GO:0001666 "response to hypoxia" evidence=IEP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IDA] [GO:0004672 "protein kinase
activity" evidence=ISO;ISS] [GO:0005524 "ATP binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IDA] [GO:0005675 "holo TFIIH
complex" evidence=ISO;ISS] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0006917 "induction of apoptosis"
evidence=IEA;ISO] [GO:0006979 "response to oxidative stress"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008104 "protein localization"
evidence=IEA;ISO] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISO;ISS;IDA] [GO:0009411 "response
to UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
[GO:0016887 "ATPase activity" evidence=ISO;IDA] [GO:0032564 "dATP
binding" evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IEA;ISO] [GO:0035315 "hair cell differentiation"
evidence=IEA;ISO] [GO:0042277 "peptide binding" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0047485 "protein
N-terminus binding" evidence=IEA;ISO] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 RGD:1307139
GO:GO:0005525 GO:GO:0005524 GO:GO:0008104 GO:GO:0006979
GO:GO:0006917 GO:GO:0003677 GO:GO:0001666 GO:GO:0045944
GO:GO:0006366 GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353
GO:GO:0009650 GO:GO:0005675 GO:GO:0006283 GO:GO:0032564
GO:GO:0035315 GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
HSSP:O29889 EMBL:BC098856 IPI:IPI00363457 RefSeq:NP_001026814.1
UniGene:Rn.44012 ProteinModelPortal:Q4G005 STRING:Q4G005
PhosphoSite:Q4G005 PRIDE:Q4G005 Ensembl:ENSRNOT00000018422
GeneID:291703 KEGG:rno:291703 UCSC:RGD:1307139 InParanoid:Q4G005
NextBio:633050 Genevestigator:Q4G005 Uniprot:Q4G005
Length = 782
Score = 1339 (476.4 bits), Expect = 8.1e-179, Sum P(2) = 8.1e-179
Identities = 258/343 (75%), Positives = 295/343 (86%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 738
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF-SNVKH--PLFKKFR 551
TM+SLSGADD VY H SR ++ KH PLFK+FR
Sbjct: 739 QASRRFGTMSSLSGADDTVYMEYHSSRNKASTKHVHPLFKRFR 781
Score = 419 (152.6 bits), Expect = 8.1e-179, Sum P(2) = 8.1e-179
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 305 (112.4 bits), Expect = 9.1e-167, Sum P(2) = 9.1e-167
Identities = 58/100 (58%), Positives = 73/100 (73%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>UNIPROTKB|P19447 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9606 "Homo sapiens" [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0032564
"dATP binding" evidence=IEA] [GO:0042277 "peptide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0047485 "protein
N-terminus binding" evidence=IPI] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA;IMP;TAS] [GO:0006265 "DNA
topological change" evidence=IMP] [GO:0005675 "holo TFIIH complex"
evidence=IDA;TAS] [GO:0006917 "induction of apoptosis"
evidence=IDA;IMP] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=TAS] [GO:0003677
"DNA binding" evidence=TAS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA;IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IDA;TAS] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0006289 "nucleotide-excision repair"
evidence=IMP;TAS] [GO:0008104 "protein localization" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP;TAS] [GO:0035315 "hair cell
differentiation" evidence=IMP] [GO:0000717 "nucleotide-excision
repair, DNA duplex unwinding" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=IMP] [GO:0009411 "response to UV" evidence=IMP]
[GO:0006979 "response to oxidative stress" evidence=IMP]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=IDA] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] Reactome:REACT_216
Reactome:REACT_71 InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
Reactome:REACT_116125 GO:GO:0009411 GO:GO:0019048 GO:GO:0008104
GO:GO:0016032 GO:GO:0006979 GO:GO:0006917 GO:GO:0003684
GO:GO:0001666 Reactome:REACT_1675 GO:GO:0045944 GO:GO:0016887
EMBL:CH471103 GO:GO:0042277 GO:GO:0004003 GO:GO:0006368
GO:GO:0008134 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000075 Reactome:REACT_1788 GO:GO:0008353
EMBL:AC110926 GO:GO:0009650 GO:GO:0005675 GO:GO:0006370
GO:GO:0000718 GO:GO:0050434 GO:GO:0006363 GO:GO:0006362
GO:GO:0006361 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
GO:GO:0033683 MIM:601675 Orphanet:453 Orphanet:670 Orphanet:220295
GO:GO:0000441 CTD:2071 eggNOG:COG1061 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:M31899 EMBL:AY163769 EMBL:BC008820 IPI:IPI00747053 PIR:A35661
RefSeq:NP_000113.1 UniGene:Hs.469872 ProteinModelPortal:P19447
SMR:P19447 DIP:DIP-83N IntAct:P19447 STRING:P19447
PhosphoSite:P19447 DMDM:119541 PaxDb:P19447 PRIDE:P19447 DNASU:2071
Ensembl:ENST00000285398 GeneID:2071 KEGG:hsa:2071 UCSC:uc002toe.1
GeneCards:GC02M128014 HGNC:HGNC:3435 HPA:CAB037153 MIM:133510
MIM:610651 neXtProt:NX_P19447 Orphanet:276252 PharmGKB:PA27849
InParanoid:P19447 PhylomeDB:P19447 ChiTaRS:ERCC3 GenomeRNAi:2071
NextBio:8425 ArrayExpress:P19447 Bgee:P19447 CleanEx:HS_ERCC3
Genevestigator:P19447 GermOnline:ENSG00000163161 Uniprot:P19447
Length = 782
Score = 1337 (475.7 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 257/343 (74%), Positives = 293/343 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF---SNVKHPLFKKFR 551
TM+S+SGADD VY H SR S HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 418 (152.2 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 305 (112.4 bits), Expect = 1.5e-166, Sum P(2) = 1.5e-166
Identities = 58/100 (58%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>UNIPROTKB|Q60HG1 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9541 "Macaca fascicularis"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006265 "DNA topological
change" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006468 "protein phosphorylation"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0006979 "response to oxidative stress" evidence=ISS]
[GO:0008022 "protein C-terminus binding" evidence=ISS] [GO:0008104
"protein localization" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 HOVERGEN:HBG051499
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:AB125166 ProteinModelPortal:Q60HG1 Uniprot:Q60HG1
Length = 782
Score = 1337 (475.7 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 257/343 (74%), Positives = 293/343 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF---SNVKHPLFKKFR 551
TM+S+SGADD VY H SR S HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 418 (152.2 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 305 (112.4 bits), Expect = 1.5e-166, Sum P(2) = 1.5e-166
Identities = 58/100 (58%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>UNIPROTKB|Q5RA62 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9601 "Pongo abelii" [GO:0000075 "cell
cycle checkpoint" evidence=ISS] [GO:0000717 "nucleotide-excision
repair, DNA duplex unwinding" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006468 "protein phosphorylation" evidence=ISS] [GO:0006917
"induction of apoptosis" evidence=ISS] [GO:0006979 "response to
oxidative stress" evidence=ISS] [GO:0008022 "protein C-terminus
binding" evidence=ISS] [GO:0008104 "protein localization"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=ISS]
[GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0043138
"3'-5' DNA helicase activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0016887 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0005675
GO:GO:0006283 GO:GO:0035315 GO:GO:0033683 CTD:2071
HOVERGEN:HBG051499 KO:K10843 GO:GO:0043138 GO:GO:0006265
GO:GO:0000717 TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:CR859159
RefSeq:NP_001125797.1 UniGene:Pab.19064 ProteinModelPortal:Q5RA62
GeneID:100172725 KEGG:pon:100172725 Uniprot:Q5RA62
Length = 782
Score = 1337 (475.7 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 257/343 (74%), Positives = 293/343 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF---SNVKHPLFKKFR 551
TM+S+SGADD VY H SR S HPLFK+FR
Sbjct: 739 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
Score = 418 (152.2 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 297 (109.6 bits), Expect = 1.0e-165, Sum P(2) = 1.0e-165
Identities = 57/100 (57%), Positives = 71/100 (71%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAE VCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAESVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>UNIPROTKB|G3V1S1 [details] [associations]
symbol:ERCC3 "Excision repair cross-complementing rodent
repair deficiency, complementation group 3 (Xeroderma pigmentosum
group B complementing), isoform CRA_b" species:9606 "Homo sapiens"
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0032564 "dATP
binding" evidence=IEA] [GO:0042277 "peptide binding" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005525 GO:GO:0005524 GO:GO:0003677
GO:GO:0001666 EMBL:CH471103 GO:GO:0042277 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008353 EMBL:AC110926 GO:GO:0009650 GO:GO:0032564
GO:GO:0000441 TIGRFAMs:TIGR00603 UniGene:Hs.469872 HGNC:HGNC:3435
ChiTaRS:ERCC3 ProteinModelPortal:G3V1S1 SMR:G3V1S1
Ensembl:ENST00000493187 ArrayExpress:G3V1S1 Bgee:G3V1S1
Uniprot:G3V1S1
Length = 718
Score = 1337 (475.7 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 257/343 (74%), Positives = 293/343 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 376 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 435
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 436 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 495
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 496 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 555
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 556 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 615
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 616 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 674
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF---SNVKHPLFKKFR 551
TM+S+SGADD VY H SR S HPLFK+FR
Sbjct: 675 QASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 717
Score = 418 (152.2 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 280 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 339
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 340 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 385
Score = 233 (87.1 bits), Expect = 6.0e-159, Sum P(2) = 6.0e-159
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 167 MVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMF 226
M LK DH SRPLWVAP+GHIFLE+FSPVY++A DFL+AIAEPVCRP H+HE ++
Sbjct: 1 MPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 60
Query: 227 RRVLTIVQS 235
V +Q+
Sbjct: 61 AAVSVGLQT 69
>UNIPROTKB|Q1RMT1 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9913 "Bos taurus" [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISS] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISS] [GO:0035315 "hair cell differentiation" evidence=ISS]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0009411 "response to UV" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0047485 "protein
N-terminus binding" evidence=ISS] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009411
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0016887 GO:GO:0004672 GO:GO:0006366
GO:GO:0004003 GO:GO:0008022 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0047485 GO:GO:0000075 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
EMBL:BC114729 IPI:IPI00704863 RefSeq:NP_001039453.1
UniGene:Bt.19954 ProteinModelPortal:Q1RMT1 STRING:Q1RMT1
PRIDE:Q1RMT1 Ensembl:ENSBTAT00000027687 GeneID:507984
KEGG:bta:507984 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 InParanoid:Q1RMT1 KO:K10843 OMA:SRVTDPQ
OrthoDB:EOG4KD6KG NextBio:20868296 GO:GO:0043138 GO:GO:0006265
GO:GO:0000717 TIGRFAMs:TIGR00603 Uniprot:Q1RMT1
Length = 782
Score = 1336 (475.4 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 257/343 (74%), Positives = 295/343 (86%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 680 LVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 738
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF-SNVKH--PLFKKFR 551
TM+S+SGADD VY H SR ++ KH PLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSSRSKTSTKHVHPLFKRFR 781
Score = 419 (152.6 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 305 (112.4 bits), Expect = 1.9e-166, Sum P(2) = 1.9e-166
Identities = 58/100 (58%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>UNIPROTKB|E2RN68 [details] [associations]
symbol:ERCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5'
DNA helicase activity" evidence=IEA] [GO:0035315 "hair cell
differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:AAEX03011839
Ensembl:ENSCAFT00000007273 Uniprot:E2RN68
Length = 779
Score = 1335 (475.0 bits), Expect = 2.1e-178, Sum P(2) = 2.1e-178
Identities = 256/343 (74%), Positives = 295/343 (86%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 437 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 496
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 497 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 556
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 557 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 616
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 617 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 676
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGME+E + +STR+EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 677 LVDQGYSFKVITKLAGMEDEE-LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSKSS 735
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF-SNVKH--PLFKKFR 551
TM+S+SGADD VY H +R ++ KH PLFK+FR
Sbjct: 736 QVSRRFGTMSSMSGADDTVYMEYHSARSKASTKHVHPLFKRFR 778
Score = 419 (152.6 bits), Expect = 2.1e-178, Sum P(2) = 2.1e-178
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 341 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 400
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 401 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 446
Score = 304 (112.1 bits), Expect = 3.1e-166, Sum P(2) = 3.1e-166
Identities = 58/100 (58%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 33 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHGSRPLWVAPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 91 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 130
>UNIPROTKB|F1RXZ5 [details] [associations]
symbol:ERCC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IEA] [GO:0035315 "hair cell
differentiation" evidence=IEA] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0035315 GO:GO:0033683
GeneTree:ENSGT00390000002204 KO:K10843 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 EMBL:FP102347
EMBL:FP340363 RefSeq:XP_003133336.2 Ensembl:ENSSSCT00000017121
GeneID:100517918 KEGG:ssc:100517918 Uniprot:F1RXZ5
Length = 782
Score = 1333 (474.3 bits), Expect = 3.5e-178, Sum P(2) = 3.5e-178
Identities = 255/343 (74%), Positives = 292/343 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 440 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 499
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 500 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 559
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 560 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 619
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 620 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 679
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 680 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSS 738
Query: 515 XXXXXXXTMASLSGADDAVYHESRFSNVK------HPLFKKFR 551
TM+S+SGADD VY E + K HPLFK+FR
Sbjct: 739 QVSRRFGTMSSMSGADDTVYMEYHSARSKAATKHVHPLFKRFR 781
Score = 419 (152.6 bits), Expect = 3.5e-178, Sum P(2) = 3.5e-178
Identities = 75/106 (70%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 344 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 403
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + AK
Sbjct: 404 SIAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAK 449
Score = 305 (112.4 bits), Expect = 3.9e-166, Sum P(2) = 3.9e-166
Identities = 58/100 (58%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESGTKVDEYGAKDYRLQMPLKDDHASRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>MGI|MGI:95414 [details] [associations]
symbol:Ercc3 "excision repair cross-complementing rodent
repair deficiency, complementation group 3" species:10090 "Mus
musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000441 "SSL2-core TFIIH complex"
evidence=ISO] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005525 "GTP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006265 "DNA topological change" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008104 "protein
localization" evidence=ISO] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISO] [GO:0009411
"response to UV" evidence=ISO] [GO:0009650 "UV protection"
evidence=IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0032564 "dATP
binding" evidence=ISO] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=ISO] [GO:0035315 "hair cell differentiation"
evidence=ISO] [GO:0042277 "peptide binding" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95414 GO:GO:0005525
GO:GO:0005524 GO:GO:0008104 GO:GO:0006979 GO:GO:0006917
GO:GO:0003677 GO:GO:0001666 GO:GO:0045944 GO:GO:0006366
GO:GO:0042277 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000075 GO:GO:0008353 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 GO:GO:0032564 GO:GO:0035315
GO:GO:0033683 GO:GO:0000441 CTD:2071 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172
HOVERGEN:HBG051499 KO:K10843 OMA:SRVTDPQ OrthoDB:EOG4KD6KG
GO:GO:0043138 GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603
EMBL:S71186 EMBL:BC016595 EMBL:BC026575 IPI:IPI00113070 PIR:A48994
RefSeq:NP_598419.1 UniGene:Mm.282335 ProteinModelPortal:P49135
SMR:P49135 STRING:P49135 PhosphoSite:P49135 PaxDb:P49135
PRIDE:P49135 DNASU:13872 Ensembl:ENSMUST00000025241 GeneID:13872
KEGG:mmu:13872 UCSC:uc008eje.1 InParanoid:P49135 NextBio:284792
Bgee:P49135 Genevestigator:P49135 GermOnline:ENSMUSG00000024382
Uniprot:P49135
Length = 783
Score = 1335 (475.0 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
Identities = 257/343 (74%), Positives = 293/343 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPA+MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 441 LDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 500
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 501 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 560
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 561 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 620
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 621 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 680
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +ST++EQ QLLQ+VLAA++ DA+EE VAGE
Sbjct: 681 LVDQGYSFKVITKLAGMEEEE-LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSG 739
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF---SNVKHPLFKKFR 551
TM+SLSGADD VY H SR S HPLFK+FR
Sbjct: 740 QASRRCGTMSSLSGADDTVYMEYHSSRSKASSKHVHPLFKRFR 782
Score = 415 (151.1 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 345 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 404
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+WL+ QEWG+M+LD+ + A+
Sbjct: 405 SVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAR 450
Score = 305 (112.4 bits), Expect = 2.4e-166, Sum P(2) = 2.4e-166
Identities = 58/100 (58%), Positives = 73/100 (73%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 36 EAVPSAAGKQV--DESSTKVDEYGAKDYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVY 93
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP H+HE ++ V +Q+
Sbjct: 94 KYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQT 133
>UNIPROTKB|F1NDN0 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 GeneTree:ENSGT00390000002204
TIGRFAMs:TIGR00603 EMBL:AADN02016819 EMBL:AADN02016820
IPI:IPI00819385 Ensembl:ENSGALT00000038117 ArrayExpress:F1NDN0
Uniprot:F1NDN0
Length = 782
Score = 1325 (471.5 bits), Expect = 2.8e-176, Sum P(2) = 2.8e-176
Identities = 256/344 (74%), Positives = 293/344 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 439 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 499 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 559 VFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 619 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 678
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VL AS+ DA+EE VAGE
Sbjct: 679 LVDQGYSFKVITKLAGMEEEE-LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSV 737
Query: 515 XXXXXXXTMASLSGADDAVY---HESRF---SNVK-HPLFKKFR 551
TM+S+SGADDAVY H SR SN HPLFK+FR
Sbjct: 738 QMSRRTGTMSSMSGADDAVYMEYHSSRSKASSNKHIHPLFKRFR 781
Score = 409 (149.0 bits), Expect = 2.8e-176, Sum P(2) = 2.8e-176
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+ C
Sbjct: 343 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDC 402
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+++EWG+M+LD+ + AK
Sbjct: 403 SIAISTYSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAK 448
Score = 301 (111.0 bits), Expect = 7.3e-165, Sum P(2) = 7.3e-165
Identities = 59/100 (59%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPLWVAP+GHIFLE+FSPVY
Sbjct: 35 EAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFLEAFSPVY 92
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 93 KYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 132
>UNIPROTKB|F1NZ23 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006979 "response to oxidative stress" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008104
"protein localization" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] [GO:0009650 "UV protection"
evidence=IEA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IEA] [GO:0035315 "hair cell differentiation"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008104 GO:GO:0006979 GO:GO:0006917 GO:GO:0003677
GO:GO:0045944 GO:GO:0004672 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000075
GO:GO:0009650 GO:GO:0006283 GO:GO:0033683
GeneTree:ENSGT00390000002204 OMA:SRVTDPQ GO:GO:0043138
GO:GO:0006265 GO:GO:0000717 TIGRFAMs:TIGR00603 IPI:IPI00585393
EMBL:AADN02016819 EMBL:AADN02016820 Ensembl:ENSGALT00000018775
ArrayExpress:F1NZ23 Uniprot:F1NZ23
Length = 787
Score = 1301 (463.0 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
Identities = 247/329 (75%), Positives = 283/329 (86%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 437 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 496
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 497 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 556
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 557 VFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 616
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 617 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 676
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VL AS+ DA+EE VAGE
Sbjct: 677 LVDQGYSFKVITKLAGMEEEE-LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSV 735
Query: 515 XXXXXXXTMASLSGADDAVYHESRFSNVK 543
TM+S+SGADDAVY E S K
Sbjct: 736 QMSRRTGTMSSMSGADDAVYMEYHSSRSK 764
Score = 409 (149.0 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+ C
Sbjct: 341 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDC 400
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+++EWG+M+LD+ + AK
Sbjct: 401 SIAISTYSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAK 446
Score = 301 (111.0 bits), Expect = 2.5e-162, Sum P(2) = 2.5e-162
Identities = 59/100 (59%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPLWVAP+GHIFLE+FSPVY
Sbjct: 33 EAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 91 KYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 130
>UNIPROTKB|Q5ZKK7 [details] [associations]
symbol:ERCC3 "TFIIH basal transcription factor complex
helicase XPB subunit" species:9031 "Gallus gallus" [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0005675
"holo TFIIH complex" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006468 GO:GO:0006366 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0005675 Reactome:REACT_115612 CTD:2071 eggNOG:COG1061
HOGENOM:HOG000160172 HOVERGEN:HBG051499 KO:K10843 OrthoDB:EOG4KD6KG
TIGRFAMs:TIGR00603 EMBL:AJ720077 IPI:IPI00585393
RefSeq:NP_001006523.1 UniGene:Gga.4898 HSSP:O29889
ProteinModelPortal:Q5ZKK7 STRING:Q5ZKK7 GeneID:424226
KEGG:gga:424226 InParanoid:Q5ZKK7 NextBio:20826586 Uniprot:Q5ZKK7
Length = 788
Score = 1293 (460.2 bits), Expect = 6.7e-173, Sum P(2) = 6.7e-173
Identities = 246/329 (74%), Positives = 282/329 (85%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKL LTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 437 LDEVHTIPAKMFRRVLTIVQAHCKLELTATLVREDDKIVDLNFLIGPKLYEANWMELQNS 496
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 497 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKII 556
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++ KPYIYGPT+Q ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 557 VFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 616
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY+LVSQDT EM+YS KRQRF
Sbjct: 617 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRF 676
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L++QGYS+KVITKLAGMEEE + +S+++EQ QLLQ+VL AS+ DA+EE VAGE
Sbjct: 677 LVDQGYSFKVITKLAGMEEEE-LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSV 735
Query: 515 XXXXXXXTMASLSGADDAVYHESRFSNVK 543
TM+S+SGADDAVY E S K
Sbjct: 736 QMSRRTGTMSSMSGADDAVYMEYHSSRSK 764
Score = 409 (149.0 bits), Expect = 6.7e-173, Sum P(2) = 6.7e-173
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+ C
Sbjct: 341 AGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDC 400
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
I ++TYSM+ HT KRSWEA++ M+WL+++EWG+M+LD+ + AK
Sbjct: 401 SIAISTYSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAK 446
Score = 301 (111.0 bits), Expect = 1.8e-161, Sum P(2) = 1.8e-161
Identities = 59/100 (59%), Positives = 72/100 (72%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K VE D+ DE+GAKDYR QM LK D+ SRPLWVAP+GHIFLE+FSPVY
Sbjct: 33 EAVPSAAGKQVE--DSGAKLDEYGAKDYRLQMPLKADNASRPLWVAPDGHIFLEAFSPVY 90
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AIAEPVCRP HIHE ++ V +Q+
Sbjct: 91 KYAQDFLVAIAEPVCRPTHIHEYKLTAYSLYAAVSVGLQT 130
>ZFIN|ZDB-GENE-030131-3043 [details] [associations]
symbol:ercc3 "excision repair cross-complementing
rodent repair deficiency, complementation group 3" species:7955
"Danio rerio" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005506 "iron ion
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016705 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen"
evidence=IEA] [GO:0020037 "heme binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0043138 "3'-5' DNA helicase
activity" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006917 "induction of apoptosis" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001128 InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR017972
Pfam:PF00067 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS00086 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3043 GO:GO:0005524 GO:GO:0005506 GO:GO:0009055
GO:GO:0003677 GO:GO:0020037 Gene3D:1.10.630.10 SUPFAM:SSF48264
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0016705 GeneTree:ENSGT00390000002204
TIGRFAMs:TIGR00603 EMBL:BX927387 IPI:IPI00994241
Ensembl:ENSDART00000124565 ArrayExpress:E7FFE5 Bgee:E7FFE5
Uniprot:E7FFE5
Length = 843
Score = 1262 (449.3 bits), Expect = 4.8e-170, Sum P(2) = 4.8e-170
Identities = 238/294 (80%), Positives = 268/294 (91%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQ
Sbjct: 439 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNN 498
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G+IA+VQCAEVWCPMSPEFYREY+ KT KR+LLY MNPNK+RA Q+LI +HERR DK I
Sbjct: 499 GYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIRFHERRNDKII 558
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DNVFALK YA+++NKPYIYGPTSQ ER+QILQNFK NPK+NTIF+SKV DTSFDLPE
Sbjct: 559 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 618
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNA+FY+LVSQDT EM+YS KRQRF
Sbjct: 619 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRF 678
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE 508
L++QGYS+KVITKLAGMEEE M +STRDEQ QLLQ+VLAAS+ DA+EE V GE
Sbjct: 679 LVDQGYSFKVITKLAGMEEEDLM-FSTRDEQQQLLQKVLAASDLDAEEEVVMGE 731
Score = 413 (150.4 bits), Expect = 4.8e-170, Sum P(2) = 4.8e-170
Identities = 72/106 (67%), Positives = 90/106 (84%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGKSLVGVTA CTVRKR LVL NS VSVEQWK QFK+WST DDS ICRFTS+AKDKP+GC
Sbjct: 343 AGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGC 402
Query: 98 GILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM+ HT KRSWEA++ M+W+++QEWG+++LD+ + AK
Sbjct: 403 SVAISTYSMLGHTTKRSWEAERVMEWMKSQEWGLIILDEVHTIPAK 448
Score = 303 (111.7 bits), Expect = 2.0e-158, Sum P(2) = 2.0e-158
Identities = 57/100 (57%), Positives = 73/100 (73%)
Query: 136 DGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVY 195
+ VP AA K V D+++ DE+GAKDYR QM+LK DH SRPLWVAP+GHIFLE+FSPVY
Sbjct: 34 EAVPAAAGKQV--DESSTKLDEYGAKDYRLQMLLKNDHSSRPLWVAPDGHIFLEAFSPVY 91
Query: 196 RHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
++A DFL+AI+EPVCRP H HE ++ V +Q+
Sbjct: 92 KYAQDFLVAISEPVCRPTHAHEYKLTAYSLYAAVSVGLQT 131
>WB|WBGene00013441 [details] [associations]
symbol:Y66D12A.15 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 OMA:SKINVIC EMBL:AL161712 RefSeq:NP_499487.1
ProteinModelPortal:Q95PZ4 SMR:Q95PZ4 STRING:Q95PZ4 PaxDb:Q95PZ4
EnsemblMetazoa:Y66D12A.15 GeneID:176584 KEGG:cel:CELE_Y66D12A.15
UCSC:Y66D12A.15 CTD:176584 WormBase:Y66D12A.15 InParanoid:Q95PZ4
NextBio:893182 Uniprot:Q95PZ4
Length = 789
Score = 1186 (422.6 bits), Expect = 2.8e-150, Sum P(2) = 2.8e-150
Identities = 230/338 (68%), Positives = 276/338 (81%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVHTIPAKMFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPK+YEANW+ELQK
Sbjct: 453 LDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKIYEANWMELQKA 512
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ FY YL + +++LLL VMNPNK+R Q+LI +HERR DK I
Sbjct: 513 GHIAKVQCAEVWCPMTSAFYSYYLRSQIARKLLLAVMNPNKFRICQFLIKFHERRNDKII 572
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNVFALK YA++M KP++YG TSQ+ER++ILQNF+ NP+VNTIFVSKVADTSFDLPE
Sbjct: 573 VFSDNVFALKRYAIEMQKPFLYGETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPE 632
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
ANVLIQIS+HGGSRRQEAQRLGRILRAKK + +++NAFFY+LVSQDT+EM YSRKRQRF
Sbjct: 633 ANVLIQISAHGGSRRQEAQRLGRILRAKKHS-TDQFNAFFYSLVSQDTVEMGYSRKRQRF 691
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEXXXXXX 514
L+NQGY+YKV+ L GME E + ++++ Q QLLQQVLA S+ DA+EE V E
Sbjct: 692 LVNQGYAYKVVNNLPGMELE-DLKLASKESQLQLLQQVLATSDADAEEEDVKEELADGTI 750
Query: 515 XXXXXXXTMASLSGADDAVYH-ESRFSNVKHPLFKKFR 551
TMAS+SG A YH +++ +HPLFK+FR
Sbjct: 751 RISRREATMASMSGGQGAQYHSKAKAIAERHPLFKRFR 788
Score = 302 (111.4 bits), Expect = 2.8e-150, Sum P(2) = 2.8e-150
Identities = 59/99 (59%), Positives = 72/99 (72%)
Query: 138 VPVAAKKNVEKDDAA-VPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYR 196
VP AA N+ ++A+ V DEFGAKDYR M LK D +RPLWVAP+GHIFLESFSPVY+
Sbjct: 35 VPKAASHNLNGENASSVMTDEFGAKDYRKDMPLKGDFTARPLWVAPDGHIFLESFSPVYK 94
Query: 197 HAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQS 235
HA DFLIAI+EPVCRP+HIHE ++ V +Q+
Sbjct: 95 HARDFLIAISEPVCRPQHIHEYQLTAYSLYAAVSVGLQT 133
Score = 290 (107.1 bits), Expect = 5.2e-149, Sum P(2) = 5.2e-149
Identities = 57/112 (50%), Positives = 80/112 (71%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVGVTA TV KR LVL NS VSVEQW+ QFKLWST D + RFT EAKD P G
Sbjct: 351 AGKTLVGVTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSG 410
Query: 97 CG-----ILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
+ ++TYSM++++ +R+ +A++ M++++ QEWG++LLD+ + AK
Sbjct: 411 ADATKPVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAK 462
>CGD|CAL0005155 [details] [associations]
symbol:orf19.2857 species:5476 "Candida albicans" [GO:0005675
"holo TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0010525 "regulation of transposition,
RNA-mediated" evidence=IEA] [GO:0070816 "phosphorylation of RNA
polymerase II C-terminal domain" evidence=IEA] [GO:0001111
"promoter clearance from RNA polymerase II promoter" evidence=IEA]
[GO:0034644 "cellular response to UV" evidence=IEA] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0000019
"regulation of mitotic recombination" evidence=IEA] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IEA]
[GO:0001113 "transcriptional open complex formation at RNA
polymerase II promoter" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005155
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000080 EMBL:AACQ01000079
GO:GO:0006289 eggNOG:COG1061 KO:K10843 TIGRFAMs:TIGR00603
RefSeq:XP_715788.1 RefSeq:XP_715839.1 ProteinModelPortal:Q5A1Y8
STRING:Q5A1Y8 GeneID:3642537 GeneID:3642603 KEGG:cal:CaO19.10376
KEGG:cal:CaO19.2857 Uniprot:Q5A1Y8
Length = 843
Score = 992 (354.3 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
Identities = 199/336 (59%), Positives = 251/336 (74%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA+MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW++L ++
Sbjct: 480 LDEVHVVPAQMFRRVVTTIAAHAKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAQK 539
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 540 GHIANVQCAEVWCPMTAEFYQEYLRENARKRMLLYIMNPTKFQACQFLIHYHEKRGDKII 599
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+++ KP+IYG T Q ER++ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 600 VFSDNVYALQEYALRLGKPFIYGSTPQQERMKILQNFQHNDQINTIFLSKVGDTSIDLPE 659
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 660 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 718
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET--------DAD----- 501
L++QGY++KVIT L+GME+ + YS+ E+ +LLQQVL +E DAD
Sbjct: 719 LVDQGYAFKVITHLSGMEQLPDLAYSSARERRELLQQVLLKNEDAAGLEIGDDADTNFIS 778
Query: 502 -EERVAGEXXXXXXXXXXXXXTMASLSGADDAVYHE 536
E+R+ E ++A L+G +D Y E
Sbjct: 779 KEKRMRLEQERNGGGATYSSGSLAGLAGGEDMAYIE 814
Score = 254 (94.5 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
Identities = 46/100 (46%), Positives = 70/100 (70%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT+RK +VLC S VSV QW+ QF W T + FTSE K+
Sbjct: 383 AGKTLVGITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASE 442
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++V+TYSM+++T+ RS ++ + M +L+++EWG ++LD+
Sbjct: 443 SGLVVSTYSMVANTRNRSHDSQKVMDFLRSREWGFIILDE 482
Score = 195 (73.7 bits), Expect = 1.8e-118, Sum P(2) = 1.8e-118
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + + LKPDH SRP+W++PN G I LESFSP+ A DFLI IAEP+ RP HIH
Sbjct: 101 FGKGDF-SYLKLKPDHFSRPIWISPNDGRIILESFSPLAEQAQDFLITIAEPISRPSHIH 159
Query: 217 E 217
E
Sbjct: 160 E 160
>DICTYBASE|DDB_G0278729 [details] [associations]
symbol:repB "transcription factor IIH subunit"
species:44689 "Dictyostelium discoideum" [GO:0009650 "UV
protection" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IEP] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;ISS] [GO:0005675 "holo
TFIIH complex" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex
portion of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core
TFIIH complex portion of NEF3 complex" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0278729 GO:GO:0005524 GO:GO:0006355
GenomeReviews:CM000152_GR GO:GO:0003684 GO:GO:0006366
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0006289 GO:GO:0009650 GO:GO:0000443
GO:GO:0000442 eggNOG:COG1061 KO:K10843 OMA:SRVTDPQ
TIGRFAMs:TIGR00603 HSSP:O29889 EMBL:U77065 RefSeq:XP_647819.1
ProteinModelPortal:O00835 STRING:O00835 EnsemblProtists:DDB0214830
GeneID:8621779 KEGG:ddi:DDB_G0278729 InParanoid:O00835
ProtClustDB:CLSZ2729383 Uniprot:O00835
Length = 800
Score = 960 (343.0 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 183/290 (63%), Positives = 229/290 (78%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+VLT+ ++HCKLGLTATLLRED+KI DLNFLIGPKLYEANWL+LQK
Sbjct: 443 LDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDEKIQDLNFLIGPKLYEANWLDLQKA 502
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTS-KRLLLYVMNPNKYRATQYLIAYHERRGDKT 333
GF+A V C+EVWCPM+ EFY+EYL+ + K+ LLY MNPNK+RA +YLI +HE+RGDK
Sbjct: 503 GFLANVSCSEVWCPMTAEFYKEYLINDSQGKKKLLYTMNPNKFRACEYLIRFHEQRGDKI 562
Query: 334 IVFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLP 393
IVFSDNV+AL+ YA + + +IYGPTS ER+ IL F+ +P V TIF+SKV DTS D+P
Sbjct: 563 IVFSDNVYALQKYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIP 622
Query: 394 EANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQR 453
EA V+IQ+SSH GSRRQEAQRLGRILR K + YNAFFY+LVS+DT EM YS KRQ+
Sbjct: 623 EATVIIQVSSHYGSRRQEAQRLGRILRPKPKSDGL-YNAFFYSLVSKDTQEMYYSTKRQQ 681
Query: 454 FLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEE 503
FLI+QGYS+KVI++L G+++E + YS++ +Q LL QVL E E
Sbjct: 682 FLIDQGYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGEDSGKNE 731
Score = 280 (103.6 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSL G+TA CTV+K LVLC S VSVEQWK+QFKLWS ++ I +FTS+ K+K
Sbjct: 346 AGKSLSGITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNV 405
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDG--VPVAAKKNV 146
G+ +TTY+M++ +RS E+ + M + N+EWG++LLD+ VP A + V
Sbjct: 406 AGVTITTYTMVAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKV 457
Score = 234 (87.4 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 44/89 (49%), Positives = 60/89 (67%)
Query: 143 KKNVEKDDAAVPE-DEFGAK-DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHD 200
KK A + +E G+ DY + +LK D+KSRP+WV P+GHIFLE+FS +Y+ A D
Sbjct: 44 KKTTNTSSATLTSSEEKGSLLDYSKRCILKQDNKSRPIWVCPDGHIFLETFSAIYKQASD 103
Query: 201 FLIAIAEPVCRPEHIHEVHTIPAKMFRRV 229
FL+AIAEPVCRP++IHE P ++ V
Sbjct: 104 FLVAIAEPVCRPQNIHEYQLTPYSLYAAV 132
>SGD|S000001405 [details] [associations]
symbol:SSL2 "Component of RNA polymerase transcription factor
TFIIH holoenzyme" species:4932 "Saccharomyces cerevisiae"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0010525
"regulation of transposition, RNA-mediated" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA;IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000019
"regulation of mitotic recombination" evidence=IMP] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IDA]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000990 "core
RNA polymerase binding transcription factor activity" evidence=IC]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0001113 "transcriptional
open complex formation at RNA polymerase II promoter" evidence=IMP]
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA;IDA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=IDA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 SGD:S000001405 GO:GO:0005524
GO:GO:0003677 EMBL:BK006942 GO:GO:0004003 EMBL:Z38059
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0070816
GO:GO:0005675 GO:GO:0016973 GO:GO:0033683 eggNOG:COG1061
GeneTree:ENSGT00390000002204 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 OrthoDB:EOG4QJVWB GO:GO:0000439
GO:GO:0000112 GO:GO:0010525 GO:GO:0001113 GO:GO:0000019 EMBL:M94176
EMBL:L01414 EMBL:AY692883 PIR:S31272 RefSeq:NP_012123.1
ProteinModelPortal:Q00578 SMR:Q00578 DIP:DIP-731N IntAct:Q00578
MINT:MINT-573804 STRING:Q00578 PaxDb:Q00578 PeptideAtlas:Q00578
EnsemblFungi:YIL143C GeneID:854663 KEGG:sce:YIL143C CYGD:YIL143c
NextBio:977238 Genevestigator:Q00578 GermOnline:YIL143C
GO:GO:0001111 Uniprot:Q00578
Length = 843
Score = 992 (354.3 bits), Expect = 7.2e-124, Sum P(2) = 7.2e-124
Identities = 202/350 (57%), Positives = 253/350 (72%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV++ + +H KLGLTATL+REDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 487 LDEVHVVPAAMFRRVVSTIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMELSQK 546
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA VQCAEVWCPM+ EFY+EYL KR+LLY+MNP K++A Q+LI YHERRGDK I
Sbjct: 547 GHIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIMNPTKFQACQFLIQYHERRGDKII 606
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+KM KP+IYG T Q ER+ ILQNF+ N ++NTIF+SKV DTS DLPE
Sbjct: 607 VFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDLPE 666
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 667 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSTKRQAF 725
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET--------DADEE--R 504
L++QGY++KVIT L GME + Y++ E+ +LLQ+VL +E DAD R
Sbjct: 726 LVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIEVGDDADNSVGR 785
Query: 505 VAGEXXXXXXXXXXXXXTMASLSGADDAVYHE---SRFSNVK--HPLFKK 549
+ +++ L+G +D Y E ++ +K HPL +K
Sbjct: 786 GSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEYSTNKNKELKEHHPLIRK 835
Score = 246 (91.7 bits), Expect = 7.2e-124, Sum P(2) = 7.2e-124
Identities = 50/118 (42%), Positives = 74/118 (62%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF W T FTS+ K+
Sbjct: 390 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTE 449
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDG--VPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS ++ + M +L +EWG ++LD+ VP A + V AA
Sbjct: 450 SGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAA 507
Score = 185 (70.2 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 39/104 (37%), Positives = 61/104 (58%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAPN-GHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
F + D+ + + L+PDH SRPLW++P+ G I LESFSP+ A DFL+ IAEP+ RP HIH
Sbjct: 113 FRSHDF-SYLRLRPDHASRPLWISPSDGRIILESFSPLAEQAQDFLVTIAEPISRPSHIH 171
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIG 260
E ++ V +++ + + L + + +NF+ G
Sbjct: 172 EYKITAYSLYAAVSVGLETDDIISVLDRLSKVPVAESIINFIKG 215
>TAIR|locus:2177891 [details] [associations]
symbol:XPB2 "homolog of Xeroderma pigmentosum
complementation group B 2" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEP] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0006289
EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AY550923 PIR:S71206
ProtClustDB:CLSN2689906 EMBL:AF308595 IPI:IPI00545479
RefSeq:NP_568591.1 UniGene:At.24438 ProteinModelPortal:Q9FUG4
SMR:Q9FUG4 STRING:Q9FUG4 PaxDb:Q9FUG4 PRIDE:Q9FUG4
EnsemblPlants:AT5G41360.1 GeneID:834138 KEGG:ath:AT5G41360
GeneFarm:4454 TAIR:At5g41360 InParanoid:Q9FUG4 PhylomeDB:Q9FUG4
Genevestigator:Q9FUG4 GermOnline:AT5G41360 Uniprot:Q9FUG4
Length = 766
Score = 957 (341.9 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 194/328 (59%), Positives = 243/328 (74%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA MFR+V++I +SHCKLGLTATL+RED+KI DLNFLIGPKLYEANWL+L K GF
Sbjct: 409 EVHVVPAHMFRKVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKGGF 468
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRL-LLYVMNPNKYRATQYLIAYHER-RGDKTI 334
IA VQCAEVWCPM+ EF+ EYL + SK+ LYVMNPNK+RA ++LI +HE+ RGDK I
Sbjct: 469 IANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKII 528
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+PE
Sbjct: 529 VFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDIPE 588
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAK---KGAIA---EEYNAFFYTLVSQDTMEMSYS 448
ANV+IQISSH GSRRQEAQRLGRILRAK + +A EEYNAFFY+LVS DT EM YS
Sbjct: 589 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYS 648
Query: 449 RKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE 508
KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +VL A + E++ +
Sbjct: 649 TKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVGLEQLEED 708
Query: 509 XXXXXXXXXXXXXTMASLSGADDAVYHE 536
+M+++SGA+ VY E
Sbjct: 709 TDGKALKTRRSMGSMSAMSGANGRVYME 736
Score = 279 (103.3 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 51/100 (51%), Positives = 76/100 (76%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW +QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+MI+ KRS EA++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDE 409
Score = 219 (82.2 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
Identities = 41/81 (50%), Positives = 56/81 (69%)
Query: 149 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 208
+D+ E E +D+ + LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEP
Sbjct: 38 EDSRDGEGEEKRRDF-TDLELKPDHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEP 96
Query: 209 VCRPEHIHEVHTIPAKMFRRV 229
VCRPE +HE + P ++ V
Sbjct: 97 VCRPESMHEYNLTPHSLYAAV 117
>POMBASE|SPAC17A5.06 [details] [associations]
symbol:ptr8 "transcription factor TFIIH complex ERCC-3
subunit" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=ISO]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000991 "core
RNA polymerase II binding transcription factor activity"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IMP] [GO:0034644 "cellular response to UV"
evidence=IMP] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17A5.06 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0034644 GO:GO:0006367 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000991 GO:GO:0005675 GO:GO:0006283
GO:GO:0016973 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
OMA:SRVTDPQ TIGRFAMs:TIGR00603 EMBL:AB027988 PIR:T37821
RefSeq:NP_593474.1 ProteinModelPortal:O13768 IntAct:O13768
STRING:O13768 EnsemblFungi:SPAC17A5.06.1 GeneID:2542174
KEGG:spo:SPAC17A5.06 OrthoDB:EOG4QJVWB NextBio:20803245
GO:GO:0000439 GO:GO:0000112 Uniprot:O13768
Length = 804
Score = 972 (347.2 bits), Expect = 1.1e-122, Sum P(2) = 1.1e-122
Identities = 194/328 (59%), Positives = 246/328 (75%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFRRV+T + +H KLGLTATL+REDDKI DLNFLIGPK+YEANW++L ++
Sbjct: 449 LDEVHVVPAAMFRRVVTTIAAHTKLGLTATLVREDDKIDDLNFLIGPKMYEANWMDLAQK 508
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWC M+ EFY EYL + KR+LLY+MNP K++A Q+LI YHE+RGDK I
Sbjct: 509 GHIAKVQCAEVWCAMTTEFYNEYLRENSRKRMLLYIMNPKKFQACQFLIDYHEKRGDKII 568
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K +IYG T Q ER++IL+NF+ N VNTIF+SKV DTS DLPE
Sbjct: 569 VFSDNVYALRAYAIKLGKYFIYGGTPQQERMRILENFQYNELVNTIFLSKVGDTSIDLPE 628
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 629 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTQEMYYSSKRQAF 687
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD----EERVAGEXX 510
LI+QGY++KVIT L GME + Y+++ E+ +LLQ+VL +E AD E+ G
Sbjct: 688 LIDQGYAFKVITNLKGMENLPNLAYASKAERLELLQEVLLQNEEAADLDDGEDTSFGSRS 747
Query: 511 XXXXXXXX--XXXTMASLSGADDAVYHE 536
++++L+GAD+ Y E
Sbjct: 748 LSRAPAKAKRSSGSLSTLAGADNMAYVE 775
Score = 255 (94.8 bits), Expect = 1.1e-122, Sum P(2) = 1.1e-122
Identities = 51/118 (43%), Positives = 77/118 (65%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K +VLC S VSV QW+ QF WS I FT++ K++
Sbjct: 352 AGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKPDHIAVFTADHKERFHSE 411
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDG--VPVAAKKNVEKDDAA 152
G++V+TYSM+++T+ RS+++ + M +L +EWG +LLD+ VP A + V AA
Sbjct: 412 AGVVVSTYSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAA 469
Score = 165 (63.1 bits), Expect = 3.4e-113, Sum P(2) = 3.4e-113
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 158 FGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIH 216
FG D+ + LK DH +RPLW+ P +G I LE+FSP+ A DFL+ I+EPV RP IH
Sbjct: 71 FGQNDFSNLLGLKLDHTARPLWINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIH 130
Query: 217 EVHTIPAKMFRRV 229
E ++ V
Sbjct: 131 EYRITAYSLYAAV 143
>TAIR|locus:2177901 [details] [associations]
symbol:XPB1 "homolog of xeroderma pigmentosum
complementation group B 1" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0009636 "response to toxic substance"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009411 "response to UV"
evidence=IEP] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009411
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
EMBL:AB006707 eggNOG:COG1061 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 EMBL:U29168 EMBL:AY550923 EMBL:AY039547
EMBL:AY113008 IPI:IPI00536770 PIR:S71206 RefSeq:NP_568592.1
UniGene:At.6482 ProteinModelPortal:Q38861 SMR:Q38861 IntAct:Q38861
STRING:Q38861 PaxDb:Q38861 PRIDE:Q38861 EnsemblPlants:AT5G41370.1
GeneID:834139 KEGG:ath:AT5G41370 GeneFarm:4453 TAIR:At5g41370
InParanoid:Q38861 OMA:YAYTIVD PhylomeDB:Q38861
ProtClustDB:CLSN2689906 Genevestigator:Q38861 GermOnline:AT5G41370
Uniprot:Q38861
Length = 767
Score = 940 (336.0 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 193/344 (56%), Positives = 250/344 (72%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA MFR+V++I +SHCKLGLTATL+RED++I DLNFLIGPKLYEANWL+L K GF
Sbjct: 409 EVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGF 468
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRL-LLYVMNPNKYRATQYLIAYHER-RGDKTI 334
IA VQCAEVWCPM+ EF+ EYL + SK+ LYVMNPNK+RA ++LI +HE+ RGDK I
Sbjct: 469 IANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKII 528
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VF+DN+FAL YA+K+ KP IYG TS ER +IL+ FK + VNT+F+SKV D S D+PE
Sbjct: 529 VFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPE 588
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAK---KGAIA---EEYNAFFYTLVSQDTMEMSYS 448
ANV+IQISSH GSRRQEAQRLGRILRAK + +A EEYNAFFY+LVS DT EM YS
Sbjct: 589 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYS 648
Query: 449 RKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGE 508
KRQ+FLI+QGYS+KVIT L + + Y +++EQ LL +V+ A + E++ +
Sbjct: 649 TKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLEED 708
Query: 509 XXXXXXXXXXXXX-TMASLSGADDAVYHESRFSNVKHPLFKKFR 551
+M+ +SG+ VY E +++ +H ++F+
Sbjct: 709 TDGMALQKARRSMGSMSVMSGSKGMVYME--YNSGRHKSGQQFK 750
Score = 271 (100.5 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 49/100 (49%), Positives = 75/100 (75%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGV+A ++K L L + VSV+QW QFKLWST D ICRFTS++K++ G
Sbjct: 310 AGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGN 369
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G++VTTY+M++ KRS E+++ ++ ++N+EWG++L+D+
Sbjct: 370 AGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDE 409
Score = 221 (82.9 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 41/81 (50%), Positives = 57/81 (70%)
Query: 149 DDAAVPEDEFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEP 208
+D+ E E +D+ ++ LKPDH +RPLW +G IFLE+FSP+Y+ A+DFLIAIAEP
Sbjct: 38 EDSRDGEGEEKKRDF-TKLELKPDHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEP 96
Query: 209 VCRPEHIHEVHTIPAKMFRRV 229
VCRPE +HE + P ++ V
Sbjct: 97 VCRPESMHEYNLTPHSLYAAV 117
>ASPGD|ASPL0000009371 [details] [associations]
symbol:AN8201 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 OMA:SRVTDPQ TIGRFAMs:TIGR00603
EnsemblFungi:CADANIAT00004248 Uniprot:C8V766
Length = 818
Score = 990 (353.6 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 202/351 (57%), Positives = 255/351 (72%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKR 274
+ EVH +PA MFR+V + + + KLGLTATLLREDDKI DLNFLIGPKLYEANW+EL ++
Sbjct: 452 LDEVHVVPAIMFRKVTSAIATQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAEQ 511
Query: 275 GFIARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTI 334
G IA+VQCAEVWCPM+ EFY EY+ K+ K LLY MNP K++A Q+LI YHE+RGDK I
Sbjct: 512 GHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYTMNPRKFQACQFLIDYHEKRGDKVI 571
Query: 335 VFSDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPE 394
VFSDNV+AL+ YA+K+ K YIYG T Q+ER++IL+NF+ N +VNTIF+SK+ DTS DLPE
Sbjct: 572 VFSDNVYALEKYALKLKKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSLDLPE 631
Query: 395 ANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
A LIQISSH GSRRQEAQRLGRILRAK+ E +NAFFY+LVS+DT EM YS KRQ F
Sbjct: 632 ATCLIQISSHYGSRRQEAQRLGRILRAKRRN-DEGFNAFFYSLVSKDTDEMFYSSKRQAF 690
Query: 455 LINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDAD---------EERV 505
L++QGY++KVIT L G+E G+ Y+T E+ +LLQ+V+ +E+ AD ER
Sbjct: 691 LVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNESSADVENVTDDLFSERS 750
Query: 506 AGEXXXXXXXXXXXXXTMASLSGADDAVYHE---SRFSNVK----HPLFKK 549
+G T++ L+G +D Y E SR +K HPLF+K
Sbjct: 751 SGNRARAKPGVKRSAATLSGLAGGEDMAYIEYNKSRNKQLKEKQHHPLFRK 801
Score = 280 (103.6 bits), Expect = 2.8e-21, P = 2.8e-21
Identities = 61/174 (35%), Positives = 97/174 (55%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDK-PMG 96
AGK+LVG+TA CT++K ++LC S +SV QW+++F WS D I FTS+ K+K
Sbjct: 355 AGKTLVGITAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRS 414
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPED 156
GI+V+TYSM+S T+ RS +A + M W+Q++EWG+M+LD+ V A + A +
Sbjct: 415 TGIIVSTYSMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPAIMFRKVTSAIATQS 474
Query: 157 EFGAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVC 210
+ G +L+ D K + L ++ ++ + H + AE C
Sbjct: 475 KLGL----TATLLREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWC 524
Score = 179 (68.1 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 35/64 (54%), Positives = 44/64 (68%)
Query: 155 EDEFGAKDYRAQMVLKPDHKSRPLWVAP-NGHIFLESFSPVYRHAHDFLIAIAEPVCRPE 213
+ FG KD+ + + LKPDH +RPLW+ P G I LESFSP+ A DFL IAEP+ RP
Sbjct: 67 DPNFGYKDF-SSLPLKPDHANRPLWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPT 125
Query: 214 HIHE 217
H+HE
Sbjct: 126 HLHE 129
>GENEDB_PFALCIPARUM|PF10_0369 [details] [associations]
symbol:PF10_0369 "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR001161 InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
EMBL:AE014185 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843 TIGRFAMs:TIGR00603
RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
Uniprot:Q8IJ31
Length = 886
Score = 744 (267.0 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 152/292 (52%), Positives = 200/292 (68%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL+++IGPKLYEANW+ELQ +GF
Sbjct: 516 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLHWIIGPKLYEANWVELQNKGF 575
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 576 LAKALCKEIWCSMPCSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 635
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 636 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKHDSSINTILLSKVGDNAIDIPIAN 695
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEY----NAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A ++ ++FFY+LVS+DT+EM YS KRQ
Sbjct: 696 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 755
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET-DADEE 503
RFLINQGY+Y V++ + + Y + Q LL+ +LA+++ + DE+
Sbjct: 756 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQENLLKCILASTDDGNMDED 807
Score = 184 (69.8 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 39/101 (38%), Positives = 67/101 (66%)
Query: 39 GKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-DK-PMG 96
GK+L G+TA T++K AL L S V+VEQWK QF+ ++ I TS+ K D P+
Sbjct: 416 GKTLTGITAASTIKKSALFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKLDLWPIN 475
Query: 97 -CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M+S++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 476 EAGVLISTYTMLSYSGKRSEQSLRIVNDIRRREWGLLVFDE 516
Score = 172 (65.6 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 92 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHE 150
>UNIPROTKB|Q8IJ31 [details] [associations]
symbol:PF10_0369 "DNA repair helicase rad25, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR001161 InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PRINTS:PR00851
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 EMBL:AE014185 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 HOGENOM:HOG000160172 KO:K10843
TIGRFAMs:TIGR00603 RefSeq:XP_001347653.1 ProteinModelPortal:Q8IJ31
EnsemblProtists:PF10_0369:mRNA GeneID:810526 KEGG:pfa:PF10_0369
EuPathDB:PlasmoDB:PF3D7_1037600 OMA:GDEDEFG ProtClustDB:CLSZ2432546
Uniprot:Q8IJ31
Length = 886
Score = 744 (267.0 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 152/292 (52%), Positives = 200/292 (68%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EV PA FRR+ IV+SHCKLGLTATL+RED I DL+++IGPKLYEANW+ELQ +GF
Sbjct: 516 EVQFAPAPSFRRINDIVKSHCKLGLTATLVREDLLIRDLHWIIGPKLYEANWVELQNKGF 575
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
+A+ C E+WC M FY+ YL + + LY NP K +YLI YHE+ DK IVF
Sbjct: 576 LAKALCKEIWCSMPCSFYKYYLKSNSFIKRRLYTCNPRKLMMCEYLIKYHEQNNDKIIVF 635
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDN+FAL H A +NKP+IYG S ERI I+ FK + +NTI +SKV D + D+P AN
Sbjct: 636 SDNIFALLHIAKTLNKPFIYGKLSPIERIAIINKFKHDSSINTILLSKVGDNAIDIPIAN 695
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEY----NAFFYTLVSQDTMEMSYSRKRQ 452
V+IQIS + SRRQEAQRLGRI+R K A ++ ++FFY+LVS+DT+EM YS KRQ
Sbjct: 696 VVIQISFNFASRRQEAQRLGRIIRPKNKANEKKNINDPDSFFYSLVSKDTIEMCYSDKRQ 755
Query: 453 RFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASET-DADEE 503
RFLINQGY+Y V++ + + Y + Q LL+ +LA+++ + DE+
Sbjct: 756 RFLINQGYAYNVLSDNIVDFNKLNLVYKNKKIQENLLKCILASTDDGNMDED 807
Score = 184 (69.8 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 39/101 (38%), Positives = 67/101 (66%)
Query: 39 GKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAK-DK-PMG 96
GK+L G+TA T++K AL L S V+VEQWK QF+ ++ I TS+ K D P+
Sbjct: 416 GKTLTGITAASTIKKSALFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKLDLWPIN 475
Query: 97 -CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
G+L++TY+M+S++ KRS ++ + + ++ +EWG+++ D+
Sbjct: 476 EAGVLISTYTMLSYSGKRSEQSLRIVNDIRRREWGLLVFDE 516
Score = 172 (65.6 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 159 GAKDYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHE 217
G DY M LK +H ++PLW+ +G I+LE F+ + A DFLI IAEP+CRPE IHE
Sbjct: 92 GFHDYSKDMKLKKNHMNKPLWICSDGFIYLEMFNSCSKQASDFLITIAEPICRPELIHE 150
>UNIPROTKB|O53873 [details] [associations]
symbol:ercc3 "PROBABLE DNA HELICASE ERCC3" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR001161
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PRINTS:PR00851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677
EMBL:BX842574 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K10843 OMA:YAYTIVD EMBL:AL123456
PIR:E70815 RefSeq:NP_215376.2 RefSeq:YP_006514212.1
ProteinModelPortal:O53873 SMR:O53873 PRIDE:O53873
EnsemblBacteria:EBMYCT00000003571 GeneID:13318763 GeneID:885425
KEGG:mtu:Rv0861c KEGG:mtv:RVBD_0861c PATRIC:18150439
TubercuList:Rv0861c HOGENOM:HOG000239540 ProtClustDB:CLSK871863
Uniprot:O53873
Length = 542
Score = 416 (151.5 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 97/246 (39%), Positives = 142/246 (57%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA +FR + QS +LGLTATL+RED + D+ LIGPK Y+A W +++ +G+
Sbjct: 292 EVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGW 350
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA +C EV M+ Y + +R + K + ++A H ++T+V
Sbjct: 351 IAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVHTKIAVVKSILAKHP--DEQTLVI 408
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
+ L ++ P I G T SER + F+ +V T+ VSKVA+ S DLPEA
Sbjct: 409 GAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAA 467
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
V +Q+S GSR++EAQRLGRILR K A+ A FY++V++D+++ Y+ RQRFL
Sbjct: 468 VAVQVSGTFGSRQEEAQRLGRILRPK----ADGGGAIFYSVVARDSLDAEYAAHRQRFLA 523
Query: 457 NQGYSY 462
QGY Y
Sbjct: 524 EQGYGY 529
Score = 114 (45.2 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 26/100 (26%), Positives = 53/100 (53%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKD-KPMG 96
AGK+LVG A L+L + V+ QWK + ++ ++ I F+ E K+ +P
Sbjct: 200 AGKTLVGAAAMAKAGATTLILVTNIVAARQWKRELVARTSLTENEIGEFSGERKEIRP-- 257
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDD 136
+ ++TY MI+ K + + ++ +++WG+++ D+
Sbjct: 258 --VTISTYQMITRRTKGEY---RHLELFDSRDWGLIIYDE 292
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 552 515 0.00088 119 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 623 (66 KB)
Total size of DFA: 325 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:03
No. of threads or processors used: 24
Search cpu time: 40.11u 0.09s 40.20t Elapsed: 00:00:38
Total cpu time: 40.12u 0.09s 40.21t Elapsed: 00:00:41
Start: Thu Aug 15 10:52:17 2013 End: Thu Aug 15 10:52:58 2013