RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11640
(552 letters)
>gnl|CDD|233046 TIGR00603, rad25, DNA repair helicase rad25. All proteins in this
family for which functions are known are DNA-DNA
helicases used for the initiation of nucleotide excision
repair and transacription as part of the TFIIH
complex.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 732
Score = 625 bits (1614), Expect = 0.0
Identities = 245/350 (70%), Positives = 283/350 (80%), Gaps = 17/350 (4%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGF 276
EVH +PA MFRRVLTIVQ+HCKLGLTATL+REDDKI DLNFLIGPKLYEANW+ELQK+GF
Sbjct: 383 EVHVVPAAMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGF 442
Query: 277 IARVQCAEVWCPMSPEFYREYLVCKTSKRLLLYVMNPNKYRATQYLIAYHERRGDKTIVF 336
IA VQCAEVWCPM+PEFYREYL + KR+LLYVMNPNK+RA Q+LI +HE+RGDK IVF
Sbjct: 443 IANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVF 502
Query: 337 SDNVFALKHYAVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEAN 396
SDNVFALK YA+K+ KP+IYGPTSQ ER+QILQNF+ NPKVNTIF+SKV DTS DLPEAN
Sbjct: 503 SDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEAN 562
Query: 397 VLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLI 456
VLIQISSH GSRRQEAQRLGRILRAKKG+ AEEYNAFFY+LVS+DT EM YS KRQRFL+
Sbjct: 563 VLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622
Query: 457 NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAASETDADEERVAGEVGGV---- 512
+QGYS+KVIT L GM+ E + YS+++EQ +LLQ+VL A + DA+ E + GE G
Sbjct: 623 DQGYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDLDAELEVLEGEFGSRALGA 682
Query: 513 -------SGGFKRSGGTMASLSGADDAVYHESRFSNVK------HPLFKK 549
SG R GG+++SLSG DD Y E R +K HPLFKK
Sbjct: 683 SRSMSSASGKAVRRGGSLSSLSGGDDMAYMEYRKPAIKKSKKEVHPLFKK 732
Score = 193 bits (491), Expect = 2e-53
Identities = 68/107 (63%), Positives = 87/107 (81%), Gaps = 1/107 (0%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMG- 96
AGKSLVGVTA CTV+K LVLC S VSVEQWK QFK+WST DDS ICRFTS+AK++ G
Sbjct: 284 AGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKERFHGE 343
Query: 97 CGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAK 143
G++V+TYSM++HT KRS+E+++ M+WL N+EWG++LLD+ V A
Sbjct: 344 AGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA 390
Score = 125 bits (316), Expect = 2e-30
Identities = 46/68 (67%), Positives = 53/68 (77%)
Query: 162 DYRAQMVLKPDHKSRPLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTI 221
DY Q+ LKPDH SRPLWVAP+GHIFLESFSP+Y+ A DFL+AIAEPVCRPEHIHE
Sbjct: 1 DYSKQLELKPDHGSRPLWVAPDGHIFLESFSPLYKQAQDFLVAIAEPVCRPEHIHEYKLT 60
Query: 222 PAKMFRRV 229
++ V
Sbjct: 61 AYSLYAAV 68
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair].
Length = 442
Score = 212 bits (541), Expect = 9e-63
Identities = 93/279 (33%), Positives = 141/279 (50%), Gaps = 26/279 (9%)
Query: 217 EVHTIPAKMFRRVLTIVQSHCK-LGLTATLLREDD-KIADLNFLIGPKLYEANWLELQKR 274
EVH +PA +RR+L ++ + LGLTAT RED +I DL LIGP +YE + EL
Sbjct: 154 EVHHLPAPSYRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDE 213
Query: 275 GFIARVQCAEVWCPMSPEFYREYL---------------VCKTSKRLLLYVMNPNKYRAT 319
G++A + E+ ++ + REY + ++ + + + K A
Sbjct: 214 GYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAV 273
Query: 320 QYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKP----YIYGPTSQSERIQILQNFKLNP 375
+ L+ H RGDKT++F+ +V A P I G T + ER IL+ F+
Sbjct: 274 RGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFR-TG 331
Query: 376 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 435
+ + KV D D+P+A+VLI + GSRR QRLGR LR +G E+ A Y
Sbjct: 332 GIKVLVTVKVLDEGVDIPDADVLIILRP-TGSRRLFIQRLGRGLRPAEG--KEDTLALDY 388
Query: 436 TLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEE 474
+LV D E +R+R+ FLI +GY+Y+++T E
Sbjct: 389 SLVPDDLGEEDIARRRRLFLIRKGYTYRLLTADEEGELI 427
Score = 45.5 bits (108), Expect = 5e-05
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 38 AGKSLVGVTACCTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSMICRFTSEAKDKPMGC 97
AGK++V A +++ LVL + ++QW K + +D I + K+
Sbjct: 66 AGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDE-IGIYGGGEKELE-PA 123
Query: 98 GILVTTYSMISHTQ 111
+ V T ++ Q
Sbjct: 124 KVTVATVQTLARRQ 137
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain. The
Prosite family is restricted to DEAD/H helicases,
whereas this domain family is found in a wide variety of
helicases and helicase related proteins. It may be that
this is not an autonomously folding unit, but an
integral part of the helicase.
Length = 78
Score = 64.1 bits (157), Expect = 5e-13
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 354 YIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQ 413
++G SQ ER +IL++F+ N K + + VA DLP+ N++I + Q
Sbjct: 12 RLHGGLSQEEREEILEDFR-NGKSKVLVATDVAGRGIDLPDVNLVINYDLP-WNPASYIQ 69
Query: 414 RLGRILRAK 422
R+GR RA
Sbjct: 70 RIGRAGRAG 78
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain.
Length = 82
Score = 56.8 bits (138), Expect = 2e-10
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 354 YIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQ 413
++G SQ ER +IL F N K+ + + VA+ DLP +++I S Q
Sbjct: 16 RLHGGLSQEEREEILDKFN-NGKIKVLVATDVAERGLDLPGVDLVIIYDLP-WSPASYIQ 73
Query: 414 RLGRILRAK 422
R+GR RA
Sbjct: 74 RIGRAGRAG 82
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 55.3 bits (134), Expect = 2e-09
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 308 LYVMNPNKYRATQYLIAYHERRGDKTIVFSDNVFALKHYAVKMNKP-----YIYGPTSQS 362
+ + K A L+ H ++G K ++F + L A + KP ++G SQ
Sbjct: 6 VLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQE 65
Query: 363 ERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRA 421
ER ++L++F+ ++ + + V DLP +V+I QR+GR RA
Sbjct: 66 EREEVLKDFR-EGEIVVLVATDVIARGIDLPNVSVVINYDLPWSP-SSYLQRIGRAGRA 122
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 44.8 bits (106), Expect = 2e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
KKKK + K++KKKKK+KKKKKKR S VG
Sbjct: 144 HKKKKHEDDKERKKKKKEKKKKKKRHSPEHPGVG 177
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 46.1 bits (110), Expect = 3e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK+K+K+K K KK+ + K K+R +G S
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 44.2 bits (105), Expect = 1e-04
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR--PSA 38
+KK+K+K+K K KK+ + K KR PS
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRKPSG 430
Score = 42.6 bits (101), Expect = 3e-04
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
KK K+ +KK+K+K+K K KK+ R +
Sbjct: 393 KKVLAKRAEKKEKEKEKPKVKKRHRDT 419
Score = 42.2 bits (100), Expect = 5e-04
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K+ +KK+K+K+K K KK+ + K
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKN 421
Score = 41.9 bits (99), Expect = 7e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+G KK K+ +KK+K+K+K K KKR K
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 41.9 bits (99), Expect = 7e-04
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ +KK+K+K+K K KK+ + K
Sbjct: 397 AKRAEKKEKEKEKPKVKKRHRDTKN 421
Score = 41.5 bits (98), Expect = 8e-04
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
S K+ +KK+K+K+K K KK+ + + GK
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 40.7 bits (96), Expect = 0.002
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
+K+K K KK+ + K K++K S
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Score = 39.2 bits (92), Expect = 0.004
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
S K K KK K+ +KK+K+K+K +
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPK 411
Score = 38.0 bits (89), Expect = 0.010
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+KK K KK K+ +KK+K+K++P K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKK 414
Score = 32.6 bits (75), Expect = 0.50
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLV 43
K +KK K KK K+ +KK K V
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKV 412
Score = 32.6 bits (75), Expect = 0.61
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K +KK K KK K+ +KK++
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEK 405
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 45.3 bits (108), Expect = 5e-05
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK+++KK +K+KKKKK+KKK KKR G+
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 42.3 bits (100), Expect = 5e-04
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KKK+++KK +K+KKKKK+KKK K+
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKK 407
Score = 41.5 bits (98), Expect = 9e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K KKK+++KK +K+KKKKK+KKK K
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKK 410
Score = 40.7 bits (96), Expect = 0.002
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KKK+++KK +K+KKKKK+KKK + K
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 37.3 bits (87), Expect = 0.019
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 11 KKK--KKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+K K KKK+++KK +K+KKKKK++ K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKR 408
>gnl|CDD|205803 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain.
This domain family is found in a wide variety of
helicases and helicase-related proteins.
Length = 128
Score = 41.8 bits (99), Expect = 1e-04
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 177 PLWVAPNGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEVHTIPAKMFRRVLTIVQSH 236
PL V P+ I L P A L A AE P H H + + RR L
Sbjct: 1 PLIVQPDLTILL-PGPPTPELAR-ALAAFAEL-ESPGHAH-TYRLTPLSLRRALD----- 51
Query: 237 CKLGLTATLLRE 248
GLTA + E
Sbjct: 52 --AGLTAEEIIE 61
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 39.7 bits (93), Expect = 0.001
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+KK+KKKKK+ KK+KK+KK KK+K S
Sbjct: 153 EKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
KK KK+K + K KKKKKKKKKK
Sbjct: 170 KKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 38.5 bits (90), Expect = 0.004
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
++KK+KKKKK+ KK+KK+KK KK++ K
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 37.8 bits (88), Expect = 0.007
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+KK KK+K + K KKKKKKKK+
Sbjct: 168 KEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 37.8 bits (88), Expect = 0.007
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+KK KK+K + K KKKKKKKKK+
Sbjct: 169 EKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 37.0 bits (86), Expect = 0.010
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KK+KK KK+K + K KKKKKKK+
Sbjct: 167 KKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 37.0 bits (86), Expect = 0.013
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+KKKKK+ KK+KK+KK KK+K + + K
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
Score = 36.2 bits (84), Expect = 0.020
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+++KK+KKKKK+ KK+KK+KK KK
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 36.2 bits (84), Expect = 0.021
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
++++KK+KKKKK+ KK+KK+KK K+
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEK 176
Score = 34.7 bits (80), Expect = 0.058
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 11 KKKKKKKKKKKKKKKKKKKK----KKKKRPSAGKS 41
KKKKK+ KK+KK+KK KK+K K K+ K
Sbjct: 157 KKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 32.0 bits (73), Expect = 0.57
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K +K+ + ++++KK+KKKKK+ KK K
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
Score = 30.8 bits (70), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
S + K +K+ + ++++KK+KKKKK K
Sbjct: 135 SEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKK 168
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+KK+KKKKKKKKKKK KK KK+
Sbjct: 110 KQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 38.5 bits (90), Expect = 0.002
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K+K K+KK+KKKKKKKKKKK KK K
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+K K+KK+KKKKKKKKKKK K+ + K
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 36.2 bits (84), Expect = 0.011
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+ K+K K+KK+KKKKKKKKKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 35.4 bits (82), Expect = 0.021
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+ K+K K+KK+KKKKKKKKKK+ S +
Sbjct: 100 IVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131
Score = 32.0 bits (73), Expect = 0.28
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
K+ K+K K+KK+KKKKKKK+
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K KK KKKKKKKKKK K K++
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEK 40
Score = 36.2 bits (84), Expect = 0.005
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K K KK KKKKKKKKKK K K+
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKE 34
Score = 35.5 bits (82), Expect = 0.010
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
V+ G K K KK KKKKKKKKKK K K
Sbjct: 5 VVGGKLKLKGKKIDVKKKKKKKKKKNKSK 33
Score = 35.1 bits (81), Expect = 0.010
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
G K KKKKKKKKKK K K++ ++ KS
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKS 46
Score = 34.3 bits (79), Expect = 0.022
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
I KKKKKKKKK K K++ +K+++++ SA
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSA 48
Score = 32.4 bits (74), Expect = 0.090
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
K K K KK KKKKKKKKK+ + + +V
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKE 41
Score = 31.6 bits (72), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKKKKKKK K K++ +K++++K +
Sbjct: 22 KKKKKKKKNKSKEEVVTEKEEEEKSSAESDL 52
Score = 27.0 bits (60), Expect = 8.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKKKKK K K++ +K++++K S K
Sbjct: 24 KKKKKKNKSKEEVVTEKEEEEKSSAESDLKE 54
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 37.7 bits (88), Expect = 0.004
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK+ K++KKK+KKKKKKK KK K+ S
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNKKEEKEGS 115
Score = 37.3 bits (87), Expect = 0.005
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGV 45
KK+ K++KKK+KKKKKKK KK + +
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 35.8 bits (83), Expect = 0.015
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K KK+ K++KKK+KKKKKKK KK
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKK 105
Score = 35.4 bits (82), Expect = 0.022
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
+K KK+ K++KKK+KKKKKKK K+ + + G
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEG 114
Score = 34.6 bits (80), Expect = 0.037
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVT 46
+K KK+ K++KKK+KKKKKKK K
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEG 114
Score = 33.5 bits (77), Expect = 0.11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK+KKKKKKK KK KK++K+ K
Sbjct: 93 KKQKKKKKKKAKKGNKKEEKEGSKSSEESSD 123
Score = 32.7 bits (75), Expect = 0.18
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K++KKK+KKKKKKK KK KK+++ + S
Sbjct: 88 AKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 32.7 bits (75), Expect = 0.20
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
KK+K ++K KK+ K++KKK+KKK+ K
Sbjct: 75 KKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNK 108
Score = 31.9 bits (73), Expect = 0.30
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK+KKKKKKK KK KK++K+ S+ +S
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEKEGSKSSEES 121
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 39.3 bits (91), Expect = 0.005
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
DV + KK KK KKK+KK+K+K++ K KKK KSL
Sbjct: 191 DVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSL 228
Score = 33.1 bits (75), Expect = 0.45
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
K KKKK++K+K++KKKKKK R
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHHHRC 303
Score = 32.3 bits (73), Expect = 0.79
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+++ +K K++KKK++K+K+ +++ +S
Sbjct: 91 RQRLEKDKREKKKREKEKRGRRRHHSLGTES 121
Score = 31.2 bits (70), Expect = 1.6
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRP 36
+D + KK K KKKK++K+K++KKKKKK
Sbjct: 267 KDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHH 299
Score = 30.8 bits (69), Expect = 1.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K KKKK++K+K++KKKKKK +
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHHHRCH 304
Score = 30.4 bits (68), Expect = 3.1
Identities = 8/25 (32%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
++ +++ +K K++KKK++K+K+ +R
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRR 112
Score = 30.0 bits (67), Expect = 3.5
Identities = 8/28 (28%), Positives = 22/28 (78%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
+ +++ +K K++KKK++K+K+ ++R +
Sbjct: 89 RHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 29.6 bits (66), Expect = 5.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
KKKK++K+K++KKKKKK + S G +
Sbjct: 281 KKKKQRKEKEEKKKKKKHHHHRCHHSDGGAE 311
Score = 29.3 bits (65), Expect = 6.4
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K K KKKK++K+K++KKKKKK
Sbjct: 276 KSPKHKKKKQRKEKEEKKKKKKHHH 300
Score = 29.3 bits (65), Expect = 7.3
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+++++ +++ +K K++KKK++K++ +
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRR 113
Score = 28.9 bits (64), Expect = 7.7
Identities = 8/25 (32%), Positives = 22/25 (88%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+++++ +++ +K K++KKK++K+KR
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKR 109
Score = 28.9 bits (64), Expect = 8.4
Identities = 8/25 (32%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+++ +++ +K K++KKK++K+K+ R
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGR 111
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.7 bits (86), Expect = 0.008
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
K +KK +K K K +KKK KK++ +P
Sbjct: 73 KAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 36.4 bits (85), Expect = 0.014
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K +K +KK +K K K +KKK K+ L
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 36.0 bits (84), Expect = 0.016
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK+ K +K +KK +K K K +KK+ +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEP 95
Score = 35.6 bits (83), Expect = 0.020
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGV 45
K +K +KK +K K K +KKK + K + V
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLFV 101
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 37.9 bits (89), Expect = 0.010
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K K +KKK+K++ K K K K R
Sbjct: 67 KAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 36.0 bits (84), Expect = 0.045
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
K K +KKK+K++ K K K +P
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 34.8 bits (81), Expect = 0.087
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KK+ K K +KKK+K++ K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAK 87
Score = 34.4 bits (80), Expect = 0.12
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K K +KKK+K++ K K K K
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 33.7 bits (78), Expect = 0.23
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ K K +KKK+K++ K K K
Sbjct: 64 KELKAWHKAQKKKEKQEAKAAKAKS 88
Score = 32.5 bits (75), Expect = 0.48
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGV 45
KK+ K K +KKK+K++ K + K + V
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRLFV 94
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.0 bits (81), Expect = 0.010
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KKKKKKKKKK + K KK
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVS 52
Score = 34.6 bits (80), Expect = 0.012
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKKKKKKKKK + K KK + S
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDVS 52
Score = 31.2 bits (71), Expect = 0.21
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRP 36
D++ KKKKKKK + K KK +
Sbjct: 20 ADLVKKKKKKKKKKAEDTAATAKAKKATAEDVS 52
Score = 29.6 bits (67), Expect = 0.73
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKK 34
G K + KKKKKKKKKK +
Sbjct: 15 GPKTEADLVKKKKKKKKKKAEDTAAT 40
Score = 29.6 bits (67), Expect = 0.91
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
KKKKKKKK + K KK + S G
Sbjct: 26 KKKKKKKKAEDTAATAKAKKATAEDVSEGAMF 57
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGV 45
K + KKKKKKKKKK + A K+
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAED 50
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 36.0 bits (83), Expect = 0.011
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 10 CKKKKKKKKKKKKKKKKKKKK 30
KKKKKK KK KK KK KK
Sbjct: 100 PKKKKKKSKKTKKPKKSSKKD 120
Score = 35.2 bits (81), Expect = 0.021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKK 32
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.2 bits (81), Expect = 0.021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKK 33
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.2 bits (81), Expect = 0.021
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.13
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 15 KKKKKKKKKKKKKKKKKKKKR 35
K KKKKKK KK KK KK K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 29.8 bits (67), Expect = 1.6
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 19 KKKKKKKKKKKKKKKKRPS 37
K KKKKKK KK KK K+ S
Sbjct: 99 KPKKKKKKSKKTKKPKKSS 117
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication,
recombination, and repair].
Length = 542
Score = 37.7 bits (88), Expect = 0.014
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 27/126 (21%)
Query: 360 SQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLI-------QISSHGGSRRQEA 412
SQ E+ +I+ F+ + N + + V + D+PE +++I +I S
Sbjct: 410 SQKEQKEIIDQFR-KGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRS--------I 460
Query: 413 QRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSY---SRKRQRFLINQGYSYKVITKLA 469
QR GR R +KG + LV++ T + +Y SR++++ +I + K+
Sbjct: 461 QRKGRTGRKRKGRV--------VVLVTEGTRDEAYYYSSRRKEQKMIESIRGLSLELKVR 512
Query: 470 GMEEER 475
E+E
Sbjct: 513 LPEKEE 518
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 36.9 bits (86), Expect = 0.021
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ K+K K++ KKKK K+ K K KK + G
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALKKVVAKGM 280
Score = 36.2 bits (84), Expect = 0.035
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K K++ KKKK K+ K K KK K +
Sbjct: 253 KSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 34.2 bits (79), Expect = 0.14
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
KKKK K+ K K KK K KK
Sbjct: 259 KKKKPKESKGVKALKKVVAKGMKK 282
Score = 33.8 bits (78), Expect = 0.19
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKK 34
KK+K K++ KKKK K+ K K K
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 33.5 bits (77), Expect = 0.25
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
+ +KK+K K++ KKKK K+ K + G
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKG 279
Score = 32.7 bits (75), Expect = 0.39
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KKKK K+ K K KK K K+
Sbjct: 258 IKKKKPKESKGVKALKKVVAKGMKK 282
Score = 28.8 bits (65), Expect = 6.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ + +KK+K K++ KKKK + S G
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGV 269
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 34.9 bits (81), Expect = 0.030
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKR 35
+++ K++ +K+K+ +K ++KK K+R
Sbjct: 99 RRERTKERAEKEKRTRKNREKKFKRR 124
Score = 32.6 bits (75), Expect = 0.19
Identities = 8/25 (32%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K++ +K+K+ +K ++KK K+++K++
Sbjct: 104 KERAEKEKRTRKNREKKFKRRQKEK 128
Score = 31.9 bits (73), Expect = 0.32
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+K+K+ +K ++KK K+++K+K+K
Sbjct: 107 AEKEKRTRKNREKKFKRRQKEKEK 130
Score = 31.1 bits (71), Expect = 0.54
Identities = 8/25 (32%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +K+K+ +K ++KK K+++K+K++
Sbjct: 106 RAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 29.9 bits (68), Expect = 1.4
Identities = 6/24 (25%), Positives = 19/24 (79%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+ ++++ K++ +K+K+ +K ++KK
Sbjct: 97 RLRRERTKERAEKEKRTRKNREKK 120
Score = 28.8 bits (65), Expect = 3.3
Identities = 5/24 (20%), Positives = 18/24 (75%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+ ++++ K++ +K+K+ +K ++K
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREK 119
Score = 28.8 bits (65), Expect = 3.7
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KKK+K+ KK++ + ++++ K+R
Sbjct: 82 KKKRKRPGKKRRIALRLRRERTKER 106
Score = 28.8 bits (65), Expect = 3.9
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KK++ + ++++ K++ +K+K+ R
Sbjct: 90 KKRRIALRLRRERTKERAEKEKRTR 114
Score = 28.4 bits (64), Expect = 4.3
Identities = 4/25 (16%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ ++++ K++ +K+K+ +K +++
Sbjct: 95 ALRLRRERTKERAEKEKRTRKNREK 119
Score = 27.6 bits (62), Expect = 8.8
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKKR 35
G K++ + ++++ K++ +K+K+ ++
Sbjct: 89 GKKRRIALRLRRERTKERAEKEKRTRK 115
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 35.1 bits (81), Expect = 0.048
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K K KKKK KKKK K K KK KK + K
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 34.3 bits (79), Expect = 0.084
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
KKKK K K KK KK K +KK A
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 33.9 bits (78), Expect = 0.11
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+K+K K KKKK KKKK K K KK KS
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKS 110
Score = 32.4 bits (74), Expect = 0.33
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK K K KK KK K +KK +K
Sbjct: 93 KKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 32.4 bits (74), Expect = 0.35
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
KK K K KK KK K +KK +K+ + L
Sbjct: 94 KKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDL 125
Score = 32.4 bits (74), Expect = 0.37
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K KKKK K K KK KK K +KK
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKD 114
Score = 32.4 bits (74), Expect = 0.40
Identities = 16/32 (50%), Positives = 16/32 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
KKKK KKKK K K KK KK K K
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 29.7 bits (67), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K KK KK K +KK +K+ + K KS
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Score = 29.7 bits (67), Expect = 2.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+ ++K+K K KKKK KKKK K K K
Sbjct: 76 KEYEEKQKWKWKKKKSKKKKDKDKDKKDDKK 106
Score = 29.7 bits (67), Expect = 3.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRAL 56
KK KK K +KK +K+ + K + + + + RK AL
Sbjct: 101 KKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYAL 146
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 32.6 bits (75), Expect = 0.057
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRP 36
+ K+ KK+ KK +KKK+K KR
Sbjct: 12 LRAKRAKKRAAKKAARKKKRKLIFKRA 38
Score = 30.7 bits (70), Expect = 0.28
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ +K + K+ KK+ KK +KKKR
Sbjct: 7 KRNEKLRAKRAKKRAAKKAARKKKR 31
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
KK+K+ +K + K+ KK+ KK R
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAAR 27
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKK 34
+K + K+ KK+ KK +KKK+K
Sbjct: 8 RNEKLRAKRAKKRAAKKAARKKKRK 32
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLV 43
KK+K+ +K + K+ KK+ KK + L+
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLI 34
Score = 27.6 bits (62), Expect = 3.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKK 34
KK+ KK +KKK+K K+ +K
Sbjct: 16 RAKKRAAKKAARKKKRKLIFKRAEK 40
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 35.0 bits (81), Expect = 0.070
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K K KK K K ++K+K K++K+++
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEK 79
Score = 34.6 bits (80), Expect = 0.091
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K KK K K ++K+K K++K++K
Sbjct: 56 AKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 33.1 bits (76), Expect = 0.27
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+K K +K K KKKK K K + + G +
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGA 220
Score = 32.7 bits (75), Expect = 0.41
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K K KK K K ++K+K K+++ G
Sbjct: 52 VAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 32.7 bits (75), Expect = 0.42
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KK K K ++K+K K++K++K R
Sbjct: 58 AKKALKAKIEEKEKAKREKEEKGLR 82
Score = 31.9 bits (73), Expect = 0.58
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K K K KK K K ++K+K KR K L
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 31.9 bits (73), Expect = 0.67
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 4 RDVISG----CKKKKKKKKKKKKKKKKKKKKKKK 33
+ V S +K K +K K KKKK K K K
Sbjct: 181 KKVSSTLNVLINEKLKAEKAAKGGKKKKGKAKAK 214
Score = 31.6 bits (72), Expect = 0.88
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K K K KK K K ++K+K K+
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAKR 74
Score = 31.2 bits (71), Expect = 1.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KK K K ++K+K K++K++K +
Sbjct: 59 KKALKAKIEEKEKAKREKEEKGLRE 83
Score = 31.2 bits (71), Expect = 1.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 30.8 bits (70), Expect = 1.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+++K K K K KK K K +++
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 30.4 bits (69), Expect = 1.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
++K K K K KK K K ++K++
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEK 71
Score = 30.0 bits (68), Expect = 2.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K K K K KK K K ++K+K
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKA 72
Score = 30.0 bits (68), Expect = 2.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
+K+++K K K K KK K K +
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKE 70
Score = 30.0 bits (68), Expect = 2.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
++K+++K K K K KK K K
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAK 65
Score = 29.6 bits (67), Expect = 4.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K +K K KKKK K K K
Sbjct: 196 KAEKAAKGGKKKKGKAKAKLNVGG 219
Score = 29.2 bits (66), Expect = 5.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K K K ++K+K K++K++K ++
Sbjct: 60 KALKAKIEEKEKAKREKEEKGLREL 84
Score = 28.9 bits (65), Expect = 5.5
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K K KKKK K K K
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGAND 222
Score = 28.9 bits (65), Expect = 5.8
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K KKKK K K K
Sbjct: 201 AKGGKKKKGKAKAKLNVGGANDDD 224
Score = 28.5 bits (64), Expect = 9.3
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
K K KKKK K K K
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGAND 222
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 35.5 bits (83), Expect = 0.078
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K KK K +K K++ GK
Sbjct: 828 PAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 33.6 bits (78), Expect = 0.30
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K KK K +K K++ ++ K
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 33.6 bits (78), Expect = 0.30
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
KK K +K K++ +K + +
Sbjct: 833 AGKKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 33.6 bits (78), Expect = 0.30
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K KK K +K K++ S
Sbjct: 826 DAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 33.2 bits (77), Expect = 0.37
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
KK K +K K++ +K A
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 33.2 bits (77), Expect = 0.43
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K KK K +K K+
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKTKQQYVAS 852
Score = 32.8 bits (76), Expect = 0.52
Identities = 5/39 (12%), Positives = 8/39 (20%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+ K KK K +K +
Sbjct: 813 LLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVA 851
Score = 32.8 bits (76), Expect = 0.59
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+ K KK K +K + S
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTKQQYVAS 852
Score = 32.8 bits (76), Expect = 0.60
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K KK K +K K++ A +
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 32.1 bits (74), Expect = 0.82
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
K +K + K KK + S V +
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVAS 852
Score = 29.4 bits (67), Expect = 6.4
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 7 ISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
++ +K + K KK K + V
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 35.1 bits (81), Expect = 0.089
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKK 33
+ K KK KKKKKKKKK++K
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 35.1 bits (81), Expect = 0.089
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
+ K KK KKKKKKKKK++K
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 35.1 bits (81), Expect = 0.091
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
+ DV K KK KKKKKKKKK++K + + P A
Sbjct: 266 YYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEA 301
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 34.7 bits (80), Expect = 0.092
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
++ KKKK+ K K K+ KKKKKK P+A KS
Sbjct: 82 ERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 33.5 bits (77), Expect = 0.19
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KKKK+ K K K+ KKKKKK + K
Sbjct: 85 KKKKRVKTKAYKEPTKKKKKKDPTAAKSPK 114
Score = 32.7 bits (75), Expect = 0.32
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK+ K K K+ KKKKKK S +
Sbjct: 86 KKKRVKTKAYKEPTKKKKKKDPTAAKSPKAA 116
Score = 32.7 bits (75), Expect = 0.33
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLV 43
KKKK K K + KKK +R S +L+
Sbjct: 102 KKKKDPTAAKSPKAAAPRPKKKSERISWAPTLL 134
Score = 32.0 bits (73), Expect = 0.68
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKKK+ K K K+ KKKKKK +
Sbjct: 84 LKKKKRVKTKAYKEPTKKKKKKDPTAAKSPK 114
Score = 29.7 bits (67), Expect = 3.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
+++++ KKKK+ K K K+ KK+
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKK 103
Score = 28.5 bits (64), Expect = 7.8
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
K+++ ++KK + K +K+K+KKK++
Sbjct: 158 KEREIRRKKIQAKARKRKEKKKEKE 182
Score = 28.1 bits (63), Expect = 10.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K+++ ++KK + K +K+K+KKK+K
Sbjct: 158 KEREIRRKKIQAKARKRKEKKKEKEL 183
>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423). This
family represents a conserved region approximately 500
residues long within a number of Arabidopsis thaliana
proteins of unknown function.
Length = 446
Score = 35.1 bits (81), Expect = 0.093
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 409 RQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRF 454
R+EA+RL RI AK EEY + + L + E ++ F
Sbjct: 377 RREAERLQRIALAKTEKSEEEYASKYLKLRLSEAEE----ERQYLF 418
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 34.4 bits (79), Expect = 0.094
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
KKKK K KK K K KK + KKK R
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 33.7 bits (77), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
KKKK K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.4 bits (66), Expect = 3.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKK 31
V K K KK K K KK + KKK +
Sbjct: 89 VEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 35.2 bits (81), Expect = 0.095
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 309 YVMNPNKYRATQYLIA-YHERRGDKTIVFSDNVFALKHYAVKMNK-----PYIYGPTSQS 362
Y+ ++ + L+ + + IVF ++ A + K ++G Q
Sbjct: 251 YLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQE 310
Query: 363 ERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 422
ER + L+ FK ++ + + VA D+P+ + +I R+GR RA
Sbjct: 311 ERDRALEKFKDG-ELRVLVATDVAARGLDIPDVSHVINYDL-PLDPEDYVHRIGRTGRAG 368
Query: 423 KGAIA 427
+ +A
Sbjct: 369 RKGVA 373
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 32.4 bits (74), Expect = 0.10
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
D+ S KK+KKKKK+ K + K KK +K+
Sbjct: 15 DDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKK 49
Score = 28.6 bits (64), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
I KKKKK+ K + K KK +KK K+
Sbjct: 17 IFSNIKKRKKKKKRTAKTARPKATKKGQKKDKK 49
Score = 27.4 bits (61), Expect = 6.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK+KKKKK+ K + K KK + K
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKK 50
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 34.3 bits (79), Expect = 0.12
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
S +K+K KK KK KK+K+K+ P
Sbjct: 222 SPSRKRKAPKKVAKKVAAAKKRKQKRSPPPP 252
Score = 32.4 bits (74), Expect = 0.46
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
S +K+K KK KK KK+K+KR
Sbjct: 218 PQSSSPSRKRKAPKKVAKKVAAAKKRKQKRSPP 250
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 32.8 bits (75), Expect = 0.14
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK+KK + + KK KK+++ S+ S
Sbjct: 80 KKRKKSRHVSSRSAKKISAKKRRRSSSSSSS 110
Score = 30.9 bits (70), Expect = 0.56
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK+KK + + KK KK++R S+ S
Sbjct: 79 KKKRKKSRHVSSRSAKKISAKKRRRSSSSSS 109
Score = 28.9 bits (65), Expect = 3.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+KK + + KK KK+++ S+ S
Sbjct: 81 KRKKSRHVSSRSAKKISAKKRRRSSSSSSSS 111
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 34.6 bits (80), Expect = 0.16
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
G KK+KKK+K+K++ K + KK+KR
Sbjct: 624 DGIKKRKKKRKRKRRFLTKIEGVKKEKR 651
Score = 29.3 bits (66), Expect = 5.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+KKK+K+K++ K + KK+K++
Sbjct: 628 KRKKKRKRKRRFLTKIEGVKKEKRK 652
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.1 bits (79), Expect = 0.18
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+KK++K +KK +K++ +K KKK +A K
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKK 445
Score = 32.6 bits (75), Expect = 0.56
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K +KK++K +KK +K++ +K K+ + +
Sbjct: 413 KLRKKQRKAEKKAEKEEAEKAAAKKKAEAAA 443
Score = 31.8 bits (73), Expect = 1.0
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
++KK +KK++K +KK +K++ +K
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKA 433
Score = 31.4 bits (72), Expect = 1.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K++K +KK +K++ +K KKK + +
Sbjct: 417 KQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 31.1 bits (71), Expect = 1.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
++KK +KK++K +KK +K++ +A K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKK 437
Score = 30.3 bits (69), Expect = 2.9
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
++KK +KK++K +KK +K++ ++
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEK 432
Score = 29.9 bits (68), Expect = 4.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
++K +KK +K++ +K KKK + K
Sbjct: 418 QRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 29.5 bits (67), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K +K++ +K KKK + KK K P
Sbjct: 424 KAEKEEAEKAAAKKKAEAAAKKAKGP 449
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 34.1 bits (79), Expect = 0.18
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK KK +K +KK++++KK+KKK+ AGK
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKK 439
Score = 33.7 bits (78), Expect = 0.25
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK +K +KK++++KK+KKKK +
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 33.4 bits (77), Expect = 0.36
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K +KK++++KK+KKKK KKK+ +
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 33.4 bits (77), Expect = 0.38
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK KK KK +K +KK++++K+ K
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKK 433
Score = 33.0 bits (76), Expect = 0.46
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
++G KK KK KK +K +KK++++KK++
Sbjct: 401 FLTGSKKATKKIKKIVEKAEKKREEEKKEK 430
Score = 32.6 bits (75), Expect = 0.57
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK++++KK+KKKK KKK++++ K
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 32.2 bits (74), Expect = 0.69
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+KK++++KK+KKKK KKK+++ +
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 32.2 bits (74), Expect = 0.74
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+K +KK++++KK+KKKK KKK +
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEE 447
Score = 32.2 bits (74), Expect = 0.78
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKRPS 37
I +K +KK++++KK+KKKK KK+
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 31.8 bits (73), Expect = 0.98
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+K +KK++++KK+KKKK K+ +
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 31.8 bits (73), Expect = 1.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK KK KK +K +KK++++KK
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKA 434
Score = 31.0 bits (71), Expect = 1.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKK 34
S KK KK +K +KK++++KK+KK
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKK 431
Score = 30.7 bits (70), Expect = 2.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K++++KK+KKKK KKK+++++ K
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 30.7 bits (70), Expect = 2.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K+KKKK KKK+++++++K+KK +
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 29.9 bits (68), Expect = 3.8
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK KKK+++++++K+KK++++ +
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 29.5 bits (67), Expect = 5.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
+KK+KKKK KKK+++++++K++ K A
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 34.4 bits (79), Expect = 0.20
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+KK K KKK K K K KKK + K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
Score = 32.5 bits (74), Expect = 0.72
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK K KKK K K K KKK + + K+
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKT 779
Score = 32.5 bits (74), Expect = 0.72
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K K K KKK K K KK KKR
Sbjct: 756 KSASTKGKAAKTVKKKSKAKSKKTTKKRAGP 786
Score = 31.7 bits (72), Expect = 1.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
K KKK K K K KKK K K K G
Sbjct: 752 KAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAG 785
Score = 31.3 bits (71), Expect = 1.8
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 11 KKK---KKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
KKK K K K KKK K K KK + AG
Sbjct: 754 KKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLY 788
Score = 30.9 bits (70), Expect = 2.2
Identities = 13/49 (26%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRAL 56
+G K +KK K KKK K K K R L
Sbjct: 740 AGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKT-TKKRAGPL 787
Score = 29.4 bits (66), Expect = 6.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K K KKK K K KK KK+
Sbjct: 763 KAAKTVKKKSKAKSKKTTKKRAGPLYT 789
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 33.0 bits (76), Expect = 0.24
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K++ +K+K ++++K K K ++ ++
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKKRKPRA 151
Score = 33.0 bits (76), Expect = 0.25
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRP 36
R+ +K ++++K K K +KK+K + ++P
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 32.2 bits (74), Expect = 0.42
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK++ +K+K ++++K K K R
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKP 149
Score = 32.2 bits (74), Expect = 0.42
Identities = 7/30 (23%), Positives = 20/30 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+++ KK++ +K+K ++++K +P A +
Sbjct: 115 AEQQAKKREAAGEKEKAPRRERKPKPKAPR 144
Score = 32.2 bits (74), Expect = 0.44
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+K+K ++++K K K +KK+K R +
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 31.8 bits (73), Expect = 0.55
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
++ KK++ +K+K ++++K K + K
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPRKKR 147
Score = 31.4 bits (72), Expect = 0.81
Identities = 5/26 (19%), Positives = 19/26 (73%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
++ +++ KK++ +K+K +++++P
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKP 138
Score = 31.4 bits (72), Expect = 0.84
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+++ KK++ +K+K ++++K K + K
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRK 145
Score = 31.0 bits (71), Expect = 1.2
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
+G K+K ++++K K K +KK+K + + +
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Score = 30.7 bits (70), Expect = 1.6
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
++ +++ KK++ +K+K +++R K
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPK 141
Score = 30.3 bits (69), Expect = 2.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK++ +K+K ++++K K K K
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPKAPRKKRKP 149
Score = 29.5 bits (67), Expect = 3.2
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ ++ +++ KK++ +K+K +R K
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKPK 139
Score = 29.5 bits (67), Expect = 3.3
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
K ++++K K K +KK+K + +K + ++
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Score = 29.5 bits (67), Expect = 3.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ +K+K ++++K K K +KKR +
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 33.0 bits (76), Expect = 0.24
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
+KKKKKKK KKKK KK K S+
Sbjct: 181 EKKKKKKKSAKKKKLKKVAAVGMKAISS 208
Score = 30.4 bits (69), Expect = 1.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K +++KKKKKKK KKKK KK + G
Sbjct: 174 KSNNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 30.4 bits (69), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
+ KKK +++KKKKKKK KK+ + VG
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVG 202
Score = 29.6 bits (67), Expect = 3.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKK 34
S +++KKKKKKK KKKK KK
Sbjct: 175 SNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 29.6 bits (67), Expect = 3.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
RD +++KKKKKKK KKKK KK
Sbjct: 170 RDKKKSNNAEEEKKKKKKKSAKKKKLKKVAA 200
Score = 28.4 bits (64), Expect = 7.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
+++KKKKKKK KKKK KK K++
Sbjct: 175 SNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 31.5 bits (72), Expect = 0.25
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+K+ K+K + KKKKK+K K+
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 30.7 bits (70), Expect = 0.50
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
++++K+ K+K + KKKKK++ +
Sbjct: 31 EQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 30.3 bits (69), Expect = 0.54
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
++K+ K+K + KKKKK+K + ++ TA
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTA 69
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRPS 37
+ KKKKK+K KKK+ + S
Sbjct: 40 KADEGNNSGKKKKKRKAKKKRDEAGPAS 67
Score = 28.8 bits (65), Expect = 2.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+++++K+ K+K + KKKKKR
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKR 54
Score = 28.0 bits (63), Expect = 3.9
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 7/35 (20%)
Query: 12 KKKKKKKKKKKK-------KKKKKKKKKKKRPSAG 39
+++++K+ K+K KKKKK+K KKKR AG
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 32.8 bits (75), Expect = 0.27
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
KKKK + K +K+ K+K +KK+ +
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKINI 30
Score = 32.0 bits (73), Expect = 0.42
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
+KKKK + K +K+ K+K +K+
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 31.3 bits (71), Expect = 0.87
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAG 39
KKK + K +K+ K+K +KKK G
Sbjct: 4 KKKNRSSNYKVNRKRLKRKDRKKKINIIG 32
Score = 30.5 bits (69), Expect = 1.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
+KKKK + K +K+ K+K +++G
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINIIG 32
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 32.6 bits (75), Expect = 0.28
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLV 43
KKK KK KK+K+K++K+ +K K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAA 46
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 33.3 bits (76), Expect = 0.28
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKR 54
+ KK KK + K K K KK KK+ S V + K
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKP 189
Score = 30.6 bits (69), Expect = 2.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAG 39
K+ KK KK + K K K KK K+ +
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSV 173
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 31.7 bits (72), Expect = 0.29
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
+++ KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKN 122
Score = 31.4 bits (71), Expect = 0.43
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+++ KK KKK++KKKKKKK K
Sbjct: 100 QRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 31.4 bits (71), Expect = 0.49
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+++ KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKN 122
Score = 30.2 bits (68), Expect = 1.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKK 33
+ + KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 28.7 bits (64), Expect = 3.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 16 KKKKKKKKKKKKKKKKKKKRPSAGK 40
+++ KK KKK++KKKKKK+ +
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNL 123
Score = 27.9 bits (62), Expect = 7.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 18 KKKKKKKKKKKKKKKKKRPSAGKSL 42
+++ KK KKK++KKKK+ K+L
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNL 123
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 33.1 bits (76), Expect = 0.29
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
++ KKKKKKKKKK KK + +
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSA 209
Score = 33.1 bits (76), Expect = 0.33
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K + ++++ KKKKKKKKKK KK + G S
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSA 202
Score = 31.9 bits (73), Expect = 0.63
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTAC 48
+ ++++ KKKKKKKKKK KK S+ ++ V
Sbjct: 174 ARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVP 211
Score = 31.5 bits (72), Expect = 0.83
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
KKKKKKKKKK KK + SA + +
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
Score = 31.5 bits (72), Expect = 0.96
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKK 33
K + ++++ KKKKKKKKKK KK
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKK 194
Score = 31.2 bits (71), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+ K + ++++ KKKKKKKKKK +
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNAT 198
Score = 29.6 bits (67), Expect = 3.6
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
KKKKKK KK + P+ S G
Sbjct: 186 KKKKKKTKKNNATGSSAEATVSSAVPTELSSGAG 219
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 32.9 bits (75), Expect = 0.30
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
DV KK KKKK +KKK KK KKKK+
Sbjct: 42 DVEIPSKKTSKKKKTTPRKKKTTKKTKKKKK 72
Score = 31.7 bits (72), Expect = 0.63
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K KKKK +KKK KK KKKKK L
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 29.8 bits (67), Expect = 2.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
F + + KK KKKK +KKK KK KKK
Sbjct: 39 FPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKK 70
Score = 28.2 bits (63), Expect = 9.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACC 49
KK KKKK +KKK KK K+ K V A
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 32.0 bits (73), Expect = 0.33
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAG 39
K++K+ K+ ++K+ K KK+KK++
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.7 bits (72), Expect = 0.53
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K+ K+ ++K+ K KK+KK+KK++ A K
Sbjct: 100 KEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 31.3 bits (71), Expect = 0.76
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 11 KKKKKKKKKKKKKKKKKK--KKKKKKRPSAGKSLVGVTACCTVRKRALV 57
+K+ K KK+KK+KK+KK +K KK+ + A +
Sbjct: 108 EKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEE 156
Score = 30.9 bits (70), Expect = 0.88
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLV 43
+K+ K+ ++K+ K KK+KK+KK + L
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLA 131
Score = 30.9 bits (70), Expect = 0.96
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+K++K+ K+ ++K+ K KK+KK
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKK 119
Score = 30.5 bits (69), Expect = 1.2
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+K++K+ K+ ++K+ K KK+K+ K
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEK 124
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 33.7 bits (77), Expect = 0.35
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
C +KKKKKKK K+KKKKK ++ K+ A
Sbjct: 681 CGSRKKKKKKKSKEKKKKKNREASKQIHA 709
Score = 32.1 bits (73), Expect = 0.87
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKK 33
G +KKKKKKK K+KKKKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 30.2 bits (68), Expect = 3.2
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKK 32
C +KKKKKKK K+KKKKK ++
Sbjct: 680 CCGSRKKKKKKKSKEKKKKKNRE 702
Score = 29.8 bits (67), Expect = 5.2
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 19 KKKKKKKKKKKKKKKKRPSAGKSL 42
+KKKKKKK K+KKKKK A K +
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQI 707
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 32.0 bits (73), Expect = 0.37
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 7 ISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
K KKK KK K KK K KK+K R
Sbjct: 2 APAKKAKKKAKKAAKAAKKGVKVKKRKVR 30
Score = 31.2 bits (71), Expect = 0.70
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
KKK KK K KK K KK+K +
Sbjct: 8 KKKAKKAAKAAKKGVKVKKRKVRTSV 33
Score = 29.7 bits (67), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KKK KK K KK K KK+K +
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKVRT 31
Score = 28.5 bits (64), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVT 46
K KK KKK KK K KK + K V
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVR 34
Score = 27.7 bits (62), Expect = 9.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K KK KKK KK K KK K +
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVK 25
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 32.3 bits (74), Expect = 0.40
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 11 KKKKK--KKKKKKKKKKKKKKKKKKKR 35
KK+++ KK+K KK KKKKK KKK R
Sbjct: 178 KKREENLKKRKDDKKNKKKKKAKKKGR 204
Score = 32.3 bits (74), Expect = 0.44
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKK 32
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 32.3 bits (74), Expect = 0.44
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKK 33
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 32.3 bits (74), Expect = 0.44
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 31.5 bits (72), Expect = 0.71
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
K+++ KK+K KK KKKKK KKK
Sbjct: 179 KREENLKKRKDDKKNKKKKKAKKKGRI 205
Score = 31.1 bits (71), Expect = 1.0
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
+++KK+++ KK+K KK KKKKK G+ L
Sbjct: 175 ERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 31.1 bits (71), Expect = 1.1
Identities = 9/25 (36%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+++K++++K +KK+K+K+ KKK+
Sbjct: 11 RRRKREQRKARKKQKRKEAKKKEDA 35
Score = 30.4 bits (69), Expect = 1.7
Identities = 9/25 (36%), Positives = 22/25 (88%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
++++K++++K +KK+K+K+ KKK+
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKED 34
Score = 30.4 bits (69), Expect = 2.0
Identities = 11/30 (36%), Positives = 25/30 (83%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+++++K++++K +KK+K+K+ KK+ A KS
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKS 38
Score = 30.0 bits (68), Expect = 2.2
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
++K++++K +KK+K+K+ KKK+ + S +
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEE 42
Score = 29.2 bits (66), Expect = 3.8
Identities = 9/24 (37%), Positives = 22/24 (91%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+++++K++++K +KK+K+K+ KKK
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKK 32
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor
involved in ribosome biogenesis.
Length = 112
Score = 30.9 bits (70), Expect = 0.44
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
G KKK++KKK K+ +K++K++KK A
Sbjct: 44 EGVSKKKQRKKKPKRLTRKQRKRQKKGLERA 74
Score = 30.2 bits (68), Expect = 1.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAG 39
KKK++KKK K+ +K++K++KK
Sbjct: 46 VSKKKQRKKKPKRLTRKQRKRQKKGLERA 74
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 33.2 bits (76), Expect = 0.45
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
IS ++K KKKKKK+KKK+++ K+++K
Sbjct: 736 KISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 32.8 bits (75), Expect = 0.69
Identities = 13/25 (52%), Positives = 22/25 (88%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
++K KKKKKK+KKK+++ K+++K R
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 2.1
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKK 33
K KKKKKK+KKK+++ K+++K +
Sbjct: 743 EKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 2.5
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
F+ S +K KKKKKK+KKK+++ K+++K +
Sbjct: 735 FKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 30.8 bits (70), Expect = 0.49
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK++KK K K KKK+ S GK
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKV 32
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 32.9 bits (75), Expect = 0.51
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPS 37
++ K K +K KKK K KKKKK S
Sbjct: 113 SLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSS 145
Score = 32.5 bits (74), Expect = 0.66
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K K +K KKK K KKKKK S+ L
Sbjct: 118 PKPKTEKLKKKITVNKSTNKKKKKVLSSKDEL 149
Score = 31.0 bits (70), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
IS +K K K +K KKK K KKK+
Sbjct: 111 AISLMRKPKPKTEKLKKKITVNKSTNKKKK 140
Score = 31.0 bits (70), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K K K +K KKK K KKKK+ + K
Sbjct: 117 KPKPKTEKLKKKITVNKSTNKKKKKVLSSK 146
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 31.5 bits (72), Expect = 0.51
Identities = 14/41 (34%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLV 43
+RD SG ++K+++K+++K++K++K++K GK LV
Sbjct: 4 YRDK-SGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLV 43
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 32.9 bits (75), Expect = 0.52
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+++K+K++ K++KKKKK+K K+ P K
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 32.6 bits (74), Expect = 0.67
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K + K+++K+K++ K++KKKKK++P
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKP 124
Score = 32.6 bits (74), Expect = 0.68
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+++K+K++ K++KKKKK+K K +
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Score = 30.6 bits (69), Expect = 2.2
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
++K+K++ K++KKKKK+K K++ K +
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 29.9 bits (67), Expect = 4.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
++KKKKK+K K++ K +K K++ K
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKR 141
Score = 29.9 bits (67), Expect = 4.5
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K+++K+K++ K++KKKKK+K +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 29.9 bits (67), Expect = 4.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+K K++ K+K+ K+K+K+K+KK
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 29.5 bits (66), Expect = 5.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K + K+++K+K++ K++KKKKK
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKK 121
Score = 29.5 bits (66), Expect = 5.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+K++ K++KKKKK+K K++ K +K K
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
Score = 29.5 bits (66), Expect = 5.9
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K K+ K + K+++K+K++ K+++ +
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEK 123
Score = 29.5 bits (66), Expect = 6.1
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
KKKKK+K K++ K +K K++ K+KRP
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRP 142
Score = 29.1 bits (65), Expect = 6.4
Identities = 12/28 (42%), Positives = 24/28 (85%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
SG +++K+K++ K++KKKKK+K K++ +
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 29.1 bits (65), Expect = 7.7
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ K + K+++K+K++ K++KKK+
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKK 120
Score = 29.1 bits (65), Expect = 7.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K++ K+K+ K+K+K+K+KK ++
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDR 160
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 32.4 bits (74), Expect = 0.52
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
+K K K KK KK R
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKMR 213
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 7 ISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
+S +K K K KK KK +K
Sbjct: 187 LSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 30.5 bits (69), Expect = 2.3
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRP 36
+K K K KK K+
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKM 212
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 31.4 bits (72), Expect = 0.54
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K+KKKKKKKKK+ + ++KKKK S
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSE 108
Score = 30.6 bits (70), Expect = 0.96
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K+KKKKKKKKK+ + ++KKKK K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKED 113
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 30.3 bits (69), Expect = 0.57
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1 MGFRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
IS ++KKKKKKK KKK K+ +KK++
Sbjct: 29 ASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63
Score = 29.6 bits (67), Expect = 0.78
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
+ I K ++ ++ ++KKKKKKK KKK K
Sbjct: 25 EQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
Score = 29.2 bits (66), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
D K ++ ++ ++KKKKKKK KKK +
Sbjct: 24 DEQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 32.1 bits (73), Expect = 0.59
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVT 46
K K K K K K K K K + K KK PS +
Sbjct: 96 KPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAA 131
Score = 32.1 bits (73), Expect = 0.64
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
+KK KK K K K K K K K K +P
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPK 116
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K K +KK KK K K K K K K K
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
KK KK K K K K K K K K + +P
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 30.9 bits (70), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
+K K +KK KK K K K K K K +
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 30.5 bits (69), Expect = 1.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
K +KK KK K K K K K K K +P
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKP 113
Score = 30.5 bits (69), Expect = 1.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK K K K K K K K K + K + K
Sbjct: 95 KKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Score = 30.1 bits (68), Expect = 2.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K+K K +KK KK K K K K K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 30.1 bits (68), Expect = 2.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
KK K K K K K K K K + K K+P +
Sbjct: 95 KKPKPKPKPKPKPKPKVKPQPKPKKPPS 122
Score = 30.1 bits (68), Expect = 2.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K K K K K + K KK K K P+A
Sbjct: 104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133
Score = 29.8 bits (67), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPS 37
K+K K +KK KK K K K K K +P
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 29.0 bits (65), Expect = 5.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K K+K K +KK KK K K K K +P
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 28.6 bits (64), Expect = 7.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K K+K K +KK KK K K K K K K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 28.6 bits (64), Expect = 7.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+KK KK K K K K K K K K +
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 32.0 bits (73), Expect = 0.60
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K K K KK +++ K++ K + RP++
Sbjct: 104 KPKPKPVKKVEEQPKREVKPVEPRPAS 130
Score = 30.0 bits (68), Expect = 2.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K K K K K K KK +++ K++ +P
Sbjct: 98 KPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 30.0 bits (68), Expect = 2.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
+ K K K K K K KK +++ KR
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKRE 120
Score = 29.7 bits (67), Expect = 3.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPS 37
K K K K K KK +++ K++ K
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKPVE 125
Score = 29.3 bits (66), Expect = 5.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
VI + K K K K K K KK +++ K+
Sbjct: 91 VIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119
Score = 28.5 bits (64), Expect = 8.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K K K KK +++ K++ K + + S ++
Sbjct: 104 KPKPKPVKKVEEQPKREVKPVEPRPASPFEN 134
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 29.9 bits (68), Expect = 0.65
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
KKKK KK KK +KKKK KKK
Sbjct: 30 KKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 29.5 bits (67), Expect = 0.99
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
KKKK KK KK +KKKK KK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKK 52
Score = 28.0 bits (63), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKK 32
+V++ KK KK KK +KKKK KKK
Sbjct: 25 NNVVAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 27.6 bits (62), Expect = 4.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
KKKK KK KK +KKKK K+
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 31.1 bits (71), Expect = 0.72
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
F ++ CK+ KKKKKK K K KKKK+
Sbjct: 53 FERILLCCKEVKKKKKKSSLKSKSSSSSKKKKKKGP 88
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 30.7 bits (70), Expect = 0.74
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
K+KK+++K++K++ K++KKK K R
Sbjct: 107 KEKKEEEKERKRQLKQQKKKAKHR 130
Score = 29.5 bits (67), Expect = 1.8
Identities = 10/23 (43%), Positives = 21/23 (91%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKR 35
++ K++KKK+ K+KK+++K++KR
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKR 118
Score = 29.1 bits (66), Expect = 2.5
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK+ K+KK+++K++K++ K++KKK G
Sbjct: 103 KKRSKEKKEEEKERKRQLKQQKKKAKHRGH 132
Score = 29.1 bits (66), Expect = 2.7
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKK 32
+ S KK+++K++K++ K++KKK K +
Sbjct: 102 KKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 28.8 bits (65), Expect = 3.5
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K+KK+++K++K++ K++KKK K
Sbjct: 104 KRSKEKKEEEKERKRQLKQQKKKAKH 129
Score = 28.0 bits (63), Expect = 6.4
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K + ++ K++KKK+ K+KK+++K+R
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKER 116
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 32.1 bits (73), Expect = 0.76
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK K KKK KK KKK+ K+ K +S
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESES 177
Score = 31.7 bits (72), Expect = 1.0
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
D I G + K KK K KKK KK KKK+ K+
Sbjct: 137 DKILGIETKAKKGKAKKKTKKSKKKEAKES 166
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 31.3 bits (71), Expect = 0.88
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 20/110 (18%)
Query: 38 AGKSLVGVTAC-----CTVRKRALVLCNSGVSVEQWKHQFKLWSTADDSM-ICRFTSEAK 91
+GK+L + R LVL + EQW + K + + + ++K
Sbjct: 35 SGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK 94
Query: 92 DKPM------GCGILVTTYSMISHTQKRSWEADQTMQWLQNQEWGIMLLD 135
+ + ILVTT + L +++LD
Sbjct: 95 REQLRKLESGKTDILVTTPGRLLD--------LLENDKLSLSNVDLVILD 136
Score = 30.9 bits (70), Expect = 1.1
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 215 IHEVHTIPAKMFRRVLTIVQSHCK-----LGLTATLLREDDKIADLNF 257
+ E H + F L + L L+AT E + + +L
Sbjct: 135 LDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFL 182
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 32.1 bits (73), Expect = 0.90
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 1 MGFRDVISGCKKKKKKKKKKKKKKK-----KKKKKKKKKRPSAGKSLVGVTACCTVRKRA 55
MG +K K KKK+KKKK+ + K+KKK+K P A L VT R R
Sbjct: 1 MGNAQGQGNNQKDKNKKKEKKKKESPPPPHEIKRKKKRKGPDAASKLPKVTPNTKCRLRL 60
Query: 56 LVL 58
L L
Sbjct: 61 LKL 63
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 32.0 bits (73), Expect = 0.90
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 16 KKKKKKKKKKKKKKKKKKKRPSA 38
+ +KK K K KK +K K+PSA
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSA 792
Score = 31.6 bits (72), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK K K KK +K KK K +K +A K+
Sbjct: 773 KKAKPKAAKKDARKAKKPSAKTQKIAAATKA 803
Score = 30.9 bits (70), Expect = 2.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+KK K K KK +K KK K + A +
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAAT 801
Score = 30.1 bits (68), Expect = 4.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKK 34
S + +KK K K KK +K KK K
Sbjct: 767 SAFRGEKKAKPKAAKKDARKAKKPSAK 793
Score = 29.3 bits (66), Expect = 7.0
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKK----KKKRPSAGKS 41
FR K KK +K KK K +K K KR A K
Sbjct: 769 FRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKR--AAKK 809
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 31.6 bits (72), Expect = 0.97
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+KKKKKKK+KK+ K + + K K P K
Sbjct: 71 EKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 31.2 bits (71), Expect = 1.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
KKKK+KK+ K + + K K KK K
Sbjct: 72 KKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 30.5 bits (69), Expect = 2.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK +KKKKKKK+KK+ K + + K+
Sbjct: 66 SKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 30.1 bits (68), Expect = 3.7
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
KKK +KKKKKKK+KK+ K + + K
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKL 91
Score = 29.3 bits (66), Expect = 5.5
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
KK+ K + KKK +KKKKKKK+KK P
Sbjct: 58 KKEDKNNESKKKSEKKKKKKKEKKEPK 84
Score = 28.9 bits (65), Expect = 7.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K +KKKKKKK+KK+ K + + K + KS
Sbjct: 69 KSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 28.6 bits (64), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAG 39
KK KKK ++KKKK KKK+K +
Sbjct: 6 KKIAKKKPGTEQKKKKSAKKKRKPKLPKN 34
Score = 27.8 bits (62), Expect = 2.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K KK KKK ++KKKK KKK++P K+
Sbjct: 4 KPKKIAKKKPGTEQKKKKSAKKKRKPKLPKNF 35
Score = 27.0 bits (60), Expect = 4.0
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKKRP 36
KK KK KKK ++KKKK KKKR
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRK 28
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 29.4 bits (67), Expect = 1.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKK 30
+KKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 31.6 bits (72), Expect = 1.1
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K K ++ KK++ + ++KKK+K+
Sbjct: 361 PTKAKPERDKKERPGRYRRKKKEKKA 386
Score = 31.6 bits (72), Expect = 1.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K ++ KK++ + ++KKK+KK K G
Sbjct: 364 AKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 31.2 bits (71), Expect = 1.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K K ++ KK++ + ++KKK+KK +
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAK 387
Score = 30.8 bits (70), Expect = 1.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K ++ KK++ + ++KKK+KK K ++
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 29.7 bits (67), Expect = 4.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K K ++ KK++ + ++KKK++
Sbjct: 360 PPTKAKPERDKKERPGRYRRKKKEKK 385
Score = 29.3 bits (66), Expect = 5.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K K K ++ KK++ + ++KKK A
Sbjct: 359 KPPTKAKPERDKKERPGRYRRKKKEKKAKS 388
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.9 bits (73), Expect = 1.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVT 46
K K K K K +K K KKK+KKK+ S+ +
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS 1193
Score = 30.4 bits (69), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K+++ K K K K K +K K KKK KS
Sbjct: 1154 KEQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
Score = 29.6 bits (67), Expect = 5.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+++ K K K K K +K K KKK++ S
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSS 1185
Score = 29.6 bits (67), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK KK+ + KKKKK +KK KS
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKS 1337
Score = 29.2 bits (66), Expect = 7.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVT 46
K K K +K K KKK+KKKKK + K+ V
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 31.4 bits (71), Expect = 1.2
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRA 55
KK KK K K K K K + K G A + +A
Sbjct: 268 KKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKA 311
Score = 30.6 bits (69), Expect = 2.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK K KK KK K K K A K
Sbjct: 259 ALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKG 291
Score = 29.1 bits (65), Expect = 7.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K KK KK KK K KK KK +A K+
Sbjct: 251 KAKKTAKKALKKAAKAVKKAAKKAAKAAAKA 281
Score = 28.7 bits (64), Expect = 8.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
+ KK KK KK K KK KK + +A
Sbjct: 249 AKKAKKTAKKALKKAAKAVKKAAKKAAKAAA 279
Score = 28.7 bits (64), Expect = 8.8
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K K KK KK KK KK K A K
Sbjct: 243 KTAAKAAKKAKKTAKKALKKAAKAVKKAAK 272
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 30.3 bits (69), Expect = 1.2
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +K+ K K++K+++ ++K+K+
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEI 146
Score = 29.9 bits (68), Expect = 1.7
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ K K++K+++ ++K+K+ K++
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQ 150
Score = 29.2 bits (66), Expect = 3.6
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K K++K+++ ++K+K+ K++
Sbjct: 127 ELAKLKREKRRENERKQKEILKEQM 151
Score = 28.4 bits (64), Expect = 6.2
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKR 35
K K++K+++ ++K+K+ K++ +
Sbjct: 127 ELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 31.1 bits (71), Expect = 1.2
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 13 KKKKKKKKKKKKK----KKKKKKKKKRPSAGK 40
KK KKKKKK+KK KK K K RP K
Sbjct: 158 KKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVK 189
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 30.7 bits (70), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
+ KK K K+ +K + KKKKKK P A
Sbjct: 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIA 111
Score = 29.6 bits (67), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 6 VISGCKKKKKKKKKKKKKKKKKKKK 30
I KK K K+ +K + KKKKKK
Sbjct: 81 AIYEVSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.6 bits (71), Expect = 1.3
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K + + + + ++K + +KK+ A K
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 31.6 bits (71), Expect = 1.5
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K + + + + ++K + +K+ K
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 31.3 bits (70), Expect = 2.0
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK + K + + + + +++ A +
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
Score = 30.5 bits (68), Expect = 3.2
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK + K + + + + ++K +A K
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Score = 30.5 bits (68), Expect = 3.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ + ++K + +KKK++ KK+ A K
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Score = 30.1 bits (67), Expect = 3.8
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KKK ++ KK + K + + + +A +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Score = 30.1 bits (67), Expect = 4.3
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRA 55
+ + ++K + +KKK++ KKK +A K +K+A
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
Score = 29.7 bits (66), Expect = 5.7
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+ + + + ++K + +KKK + K+
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
Score = 29.0 bits (64), Expect = 8.9
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K + K + + + + ++K + K
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 29.0 bits (64), Expect = 9.3
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK ++ KK + K + + + + K+
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 28.8 bits (65), Expect = 1.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAG 39
KK+KK +K K+ K +++ +++ G
Sbjct: 33 KKRKKYEKAVKRLKSQRRVVREEDGGYGG 61
Score = 26.8 bits (60), Expect = 8.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
+K+KK ++ + KK+KK +K K+ S
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKS 47
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 31.3 bits (71), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+ K KK+K KK+K+ K++ +AGK+
Sbjct: 350 ARVKAKKEKLAKKRKQVSKEEAAAIKAAGKA 380
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.2 bits (71), Expect = 1.5
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+K+ K++K+ +K KK+++KKKK+
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 30.0 bits (68), Expect = 3.5
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K++K+ K++K+ +K KK+++KKK+
Sbjct: 557 KEEKEALKEQKRLRKLKKQEEKKKK 581
Score = 29.6 bits (67), Expect = 5.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K++K+ +K KK+++KKKK+ +K
Sbjct: 562 ALKEQKRLRKLKKQEEKKKKELEKL 586
Score = 29.6 bits (67), Expect = 5.6
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K++K+ +K KK+++KKKK+ ++
Sbjct: 561 EALKEQKRLRKLKKQEEKKKKELEK 585
Score = 28.8 bits (65), Expect = 8.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K++K+ +K KK+++KKKK+ +K
Sbjct: 563 LKEQKRLRKLKKQEEKKKKELEKLE 587
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 31.1 bits (70), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
K ++++KKK+K++ KK K KK GK V
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVD 592
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 29.6 bits (67), Expect = 1.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLV 43
K KKK K +K +KK K++ + +KR + K V
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEKRQALEKGRV 63
Score = 28.1 bits (63), Expect = 6.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
KKK K +K +KK K++ + +K++
Sbjct: 33 AKKKLKSEKLEKKAKRQLRAEKRQAL 58
Score = 28.1 bits (63), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KK K KKK K +K +KK K++
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQL 50
Score = 27.7 bits (62), Expect = 7.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K KKK K +K +KK K++ + +K++
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEKRQ 56
Score = 27.7 bits (62), Expect = 8.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K +KK K++ + +K++ +K + +P + L
Sbjct: 41 KLEKKAKRQLRAEKRQALEKGRVKPVLPEDL 71
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 30.5 bits (69), Expect = 1.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KKK+ +K KK KKK K+K K
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEK 81
Score = 29.0 bits (65), Expect = 5.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
D+ K+ KKK+ +K KK KKK
Sbjct: 42 DIEIPSPKQPKKKRPTTPRKPATTKKSKKKD 72
Score = 28.6 bits (64), Expect = 6.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
K+ KKK+ +K KK KKK +
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKE 74
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 30.8 bits (70), Expect = 1.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKK 29
R + K+K++ KK+KKKK KK K
Sbjct: 349 RPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.9 bits (65), Expect = 7.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKK 31
K+K++ KK+KKKK KK K
Sbjct: 352 ALSPKRKREGDKKQKKKKSKKLK 374
>gnl|CDD|200301 TIGR03621, F420_MSMEG_2516, probable F420-dependent oxidoreductase,
MSMEG_2516 family. Coenzyme F420 is produced by
methanogenic archaea, a number of the Actinomycetes
(including Mycobacterium tuberculosis), and rare members
of other lineages. The resulting information-rich
phylogenetic profile identifies candidate F420-dependent
oxidoreductases within the family of luciferase-like
enzymes (pfam00296), where the species range for the
subfamily encompasses many F420-positive genomes without
straying beyond. This family is uncharacterized, and
named for member MSMEG_2516 from Mycobacterium smegmatis
[Unknown function, Enzymes of unknown specificity].
Length = 295
Score = 30.8 bits (70), Expect = 1.9
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 381 FVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLV-S 439
FV + A FD E N+LIQ R A L G E+ Y L+ S
Sbjct: 201 FVREAAGDRFDDIELNLLIQAVVVTDDREAAAAEL---AATLPGLTPEQILESPYVLIGS 257
Query: 440 QDTMEMSYSRKRQRFLINQGYSY 462
+ + +R+R+ G SY
Sbjct: 258 PEQIAERLRERRERY----GVSY 276
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 31.0 bits (70), Expect = 1.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 347 AVKMNKPYIYGPTSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLI 399
A+K YI+ P S+R+ +L N + +VN V + SF+LP LI
Sbjct: 349 AIKARHGYIHPPPLTSDRVIVLLNTQ--NEVNGYRRWSVNNVSFNLPHTPYLI 399
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 30.9 bits (70), Expect = 1.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
KKKKKKKKK K+ + KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTI 33
Score = 30.5 bits (69), Expect = 2.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 5 DVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
DV + KKKKKKKKK K+ + KK
Sbjct: 3 DVFNIFKKKKKKKKKASKESSNGSQNSKKT 32
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 30.7 bits (70), Expect = 1.9
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK KK K K KKKKKK P + S
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETS 380
Score = 30.7 bits (70), Expect = 2.3
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 17/58 (29%)
Query: 6 VISGCKKKKKKKKKK-----------------KKKKKKKKKKKKKKRPSAGKSLVGVT 46
V ++ KK K KK K K K KKKKKK ++ +
Sbjct: 323 VEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETS 380
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.1 bits (70), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
++K KKKKKK K KKK KK G
Sbjct: 237 DEEKSKKKKKKLAKNKKKLDDDKKGKRGGD 266
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 30.4 bits (69), Expect = 2.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
+ K+ K KKK KKK+K KR
Sbjct: 14 AVQVAKQAKAKKKANKKKRKIYFKRA 39
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 29.7 bits (67), Expect = 2.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ K + K+KKK++ K K +K++P
Sbjct: 114 PPETKTESKEKKKREVPKPKTEKEKPKTEP 143
Score = 29.3 bits (66), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+KKK++ K K +K+K K + KK +PS K
Sbjct: 123 EKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 29.0 bits (65), Expect = 3.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
+ K + K+KKK++ K K +K+K + K
Sbjct: 116 ETKTESKEKKKREVPKPKTEKEKPKTEPKK 145
Score = 29.0 bits (65), Expect = 3.9
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
++ + K + K+KKK++ K K K
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEKEKPK 140
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 30.0 bits (68), Expect = 2.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 8 SGC-----KKKKKKKKKKKKKKKKKKKKKKKKRP 36
S C K+ K + KKK + K++P
Sbjct: 99 SRCREDFLKRVAANDAIKAEAKKKGELPSTKRQP 132
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 29.6 bits (67), Expect = 2.2
Identities = 11/58 (18%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQW 68
+ +++KK++++K+K++ +K +++ P + + KR L + V+ ++W
Sbjct: 73 RMDERRKKRREQKEKEEIEKYREENPKIQQQFADL-------KRNL----ATVTEDEW 119
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 28.7 bits (65), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K++++K KKK KK + ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 30.7 bits (70), Expect = 2.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKK K K K KKK K + S+ K+
Sbjct: 76 KKKTKTAAKAAAAKAPAKKKLKDELDSSKKA 106
Score = 30.3 bits (69), Expect = 2.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K K K KKK K + + + K
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Score = 30.0 bits (68), Expect = 3.8
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K K KKK K + KK
Sbjct: 83 AKAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
Score = 30.0 bits (68), Expect = 4.3
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KKK K K K KKK K
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSS 103
Score = 29.6 bits (67), Expect = 5.6
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K KKK K + KK +K+ + K
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Score = 29.6 bits (67), Expect = 5.7
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
KKK K K K KKK + S
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Score = 29.2 bits (66), Expect = 5.8
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
K KKK K + KK +KK
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Score = 28.8 bits (65), Expect = 8.2
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
K K KKK K + KK
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Score = 28.8 bits (65), Expect = 9.7
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K K KKK K + K+ +L
Sbjct: 81 TAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
KK+KKK K + KK +K+ K KK P
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKKGP 54
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 28.8 bits (65), Expect = 2.4
Identities = 6/24 (25%), Positives = 19/24 (79%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
K++K+++K +++++ K+ K K++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKRE 24
Score = 28.4 bits (64), Expect = 3.5
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKR 35
K++K+++K +++++ K+ K KR
Sbjct: 1 KERKEEEKAQREEELKRLKNLKR 23
Score = 27.6 bits (62), Expect = 5.0
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
K++K+++K +++++ K+ K K+
Sbjct: 1 KERKEEEKAQREEELKRLKNLKRE 24
Score = 27.6 bits (62), Expect = 5.7
Identities = 5/23 (21%), Positives = 18/23 (78%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKK 33
+K+++K +++++ K+ K K+++
Sbjct: 3 RKEEEKAQREEELKRLKNLKREE 25
Score = 27.6 bits (62), Expect = 5.7
Identities = 5/23 (21%), Positives = 18/23 (78%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
+K+++K +++++ K+ K K+++
Sbjct: 3 RKEEEKAQREEELKRLKNLKREE 25
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 29.1 bits (65), Expect = 2.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 7 ISGCKKKKKK-----KKKKKKKKKKKKKKKKKKRPSA 38
I G KK KK +KK +KK+KK RP
Sbjct: 47 IVGLNKKPKKISAEEAEKKLLQKKEKKALTNVLRPEP 83
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 29.6 bits (66), Expect = 2.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
KKKK+K +KK K KKK++K K P
Sbjct: 27 KKKKEKVSEKKGKSKKKEEKPNGKIPEH 54
Score = 29.6 bits (66), Expect = 2.5
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRP 36
K KKKK+K +KK K KKK+++P
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEKP 47
Score = 28.8 bits (64), Expect = 5.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKK 33
K KKKK+K +KK K KKK++K
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEK 46
Score = 28.8 bits (64), Expect = 5.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
K KKKK+K +KK K KKK++K
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEK 46
Score = 28.0 bits (62), Expect = 7.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRPSAGK 40
K KKKK+K +KK K KKK+ GK
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEKPNGK 50
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 30.4 bits (69), Expect = 2.5
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
+K K +K K ++ +KK KK + K+L
Sbjct: 344 EKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIK 380
Score = 29.3 bits (66), Expect = 5.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 7 ISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K +K K ++ +KK KK + K + KS+
Sbjct: 344 EKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSI 379
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 28.4 bits (64), Expect = 2.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK++K K ++ K +K++ K K+R +A
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQRQAAND 68
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 28.0 bits (63), Expect = 3.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 11 KKKKKKKKKKKKKKKKKK---KKKKKKRP 36
+KK + +K +K+ KK K KKKK P
Sbjct: 7 EKKVAEHHRKLRKEAKKNPTWKSKKKKDP 35
Score = 27.6 bits (62), Expect = 4.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRP 36
+ + K +KK + +K +K+ KK P
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNP 25
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 27.5 bits (62), Expect = 3.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
K +K+K+KK +K+++KK +
Sbjct: 40 KPSEKRKRKKAAARKRRRKKLARE 63
Score = 26.8 bits (60), Expect = 5.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
K +K+K+KK +K+++KK ++
Sbjct: 40 KPSEKRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.5 bits (67), Expect = 3.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKR 35
+++K+KKK K++KK K++K+K
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKL 119
>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes the
third step in histidine degradation [Energy metabolism,
Amino acids and amines].
Length = 377
Score = 30.1 bits (68), Expect = 3.4
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 370 NFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEE 429
N +P ++ + +A + L + + A LG ++G +
Sbjct: 292 NPGSSPTLSMQLIMSLACRLMKMTPEEALHAATVNA------AYALGL--GEERGTLEAG 343
Query: 430 YNAFFYTLVSQDTMEMSY 447
+A L + E+ Y
Sbjct: 344 RDADLVILSAPSYAEIPY 361
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 28.8 bits (65), Expect = 3.5
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 20/108 (18%)
Query: 39 GKSLVGVTACCTV-----RKRALVLCNSGVSVEQWKHQFKLWSTADDSMIC--RFTSEAK 91
GK+L + + + LVL + Q + K + TS +
Sbjct: 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ 71
Query: 92 DKPM---GCGILVTTYSM-ISHTQKRSWEADQTMQWLQNQEWGIMLLD 135
+ + I+V T + ++ L ++ +++LD
Sbjct: 72 QEKLLSGKTDIVVGTPGRLLDELERLK---------LSLKKLDLLILD 110
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.2 bits (69), Expect = 3.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAG 39
+K+ K +KK+KKKKK+K+K++ G
Sbjct: 612 ARKRLNKANEKKEKKKKKQKEKQEELKVG 640
Score = 29.0 bits (66), Expect = 8.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
+K +K KKKKKKK K K K + L
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPRTVSLEL 707
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.9 bits (68), Expect = 3.6
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 8/33 (24%)
Query: 11 KKKKKKKKKKKKKK--------KKKKKKKKKKR 35
KK++KKK++++ K +K ++K++KK+
Sbjct: 287 KKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQ 319
Score = 28.8 bits (65), Expect = 7.4
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 9/34 (26%)
Query: 11 KKKKKKKKKKKK---------KKKKKKKKKKKKR 35
K++KKK++++ K +K ++K++KK+ R
Sbjct: 288 KEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 30.2 bits (68), Expect = 3.6
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKH 70
K + + + + K KK KK KKKK G S V V V +S + +W
Sbjct: 235 KPQAEAENEAGKSDKKDKKSKKKKVLGKGTSAVLQLIKDRVTNGGGVSSDSLQVLAEWAT 294
Query: 71 QFKL 74
Q L
Sbjct: 295 QLLL 298
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 29.6 bits (67), Expect = 3.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 4 RDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
R+++ K KKKK K K K K KK++KR
Sbjct: 208 RELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 29.8 bits (67), Expect = 3.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
++ K++ +KK+K KKK +K+K P +
Sbjct: 346 DDEESKEEVEKKQKVKKKPRKRKVNPVS 373
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.1 bits (68), Expect = 3.9
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKH 70
KK K+ KKK KKK+ KK GKS V + + + G+ V+ KH
Sbjct: 601 KKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREIDVSRLDIRV---GLIVKAEKH 656
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 29.7 bits (67), Expect = 4.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTA 47
K+ KKKKKKKKKKKKK + + +V +A
Sbjct: 52 NKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
>gnl|CDD|169983 PRK09579, PRK09579, multidrug efflux protein; Reviewed.
Length = 1017
Score = 29.8 bits (67), Expect = 4.2
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 38/111 (34%)
Query: 387 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMS 446
D +FD PE V++ I R +A ++G ++ G +A TL+ + +
Sbjct: 693 DLAFDKPE--VVVDID------RAKAAQMGVSMQDLGGTLA--------TLLGEGEI--- 733
Query: 447 YSRKRQRFLINQGYSYKVITKLAGMEEERGM--------HYSTRDEQGQLL 489
RF I G SYKVI ++ ER +Y ++EQGQLL
Sbjct: 734 -----NRFTI-DGRSYKVIAQV-----ERPYRDNPGWLNNYYVKNEQGQLL 773
>gnl|CDD|232830 TIGR00113, queA, S-adenosylmethionine:tRNA
ribosyltransferase-isomerase. This model describes the
enzyme for S-adenosylmethionine:tRNA
ribosyltransferase-isomerase (QueA). QueA synthesizes
Queuosine which is usually in the first position of the
anticodon of tRNAs specific for asparagine, aspartate,
histidine, and tyrosine [Protein synthesis, tRNA and
rRNA base modification].
Length = 344
Score = 29.7 bits (67), Expect = 4.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 388 TSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 435
T+F LP++++++ +S+ G + A K A+ E+Y F Y
Sbjct: 298 TNFHLPKSSLIMLVSALAG--------RENTMNAYKHAVEEKYRFFSY 337
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 27.8 bits (62), Expect = 4.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKK 34
GCK KK+ K K K+ K KK
Sbjct: 15 GCKWDKKEDDGKCKPKEGKAKKNGAP 40
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 28.0 bits (63), Expect = 4.7
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Query: 11 KKKKKKKKKKKK----KKKKKKKKKKKKR 35
K++KKKKKKK + +KK+KK+ ++R
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQR 66
Score = 27.6 bits (62), Expect = 6.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K++KKKKKKK + + +KK+KK S
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSE 64
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 29.3 bits (66), Expect = 4.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKK 32
+ + +KKK + KKK K KK +
Sbjct: 145 WCERTEILAEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
protein.
Length = 342
Score = 29.4 bits (66), Expect = 5.0
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+KK KK K K R + S
Sbjct: 269 QKKVPPPVPKKPAKGPIVKPAISREKSLDS 298
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 29.8 bits (68), Expect = 5.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 11 KKKKKKKKKKKKKKKKKKKKK 31
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 5.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 12 KKKKKKKKKKKKKKKKKKKKK 32
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 5.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 13 KKKKKKKKKKKKKKKKKKKKK 33
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 5.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 14 KKKKKKKKKKKKKKKKKKKKK 34
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 5.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRPS 37
+K++ KKKKK+KK KK + ++
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched
DNA substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch
junction and thus generating ligatable nicked products
from 5'-flap or replication fork substrates.
Length = 627
Score = 29.6 bits (66), Expect = 5.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPS 37
SG + KKKK KK K +K+ K+K KK +
Sbjct: 67 SGKRVPKKKKIKKPKLRKRTKRKNKKIKSL 96
>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine
triphosphatases (GTPases). The Ras2 subfamily, found
exclusively in fungi, was first identified in Ustilago
maydis. In U. maydis, Ras2 is regulated by Sql2, a
protein that is homologous to GEFs (guanine nucleotide
exchange factors) of the CDC25 family. Ras2 has been
shown to induce filamentous growth, but the signaling
cascade through which Ras2 and Sql2 regulate cell
morphology is not known. Most Ras proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of most
Ras proteins.
Length = 190
Score = 28.7 bits (64), Expect = 5.8
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKK 34
F ++ +++++ + K KKK+KKK+K
Sbjct: 155 FYTLVRALRQQRQGGQGPKGGPTKKKEKKKRK 186
>gnl|CDD|221161 pfam11661, DUF2986, Protein of unknown function (DUF2986). This
family of proteins has no known function.
Length = 44
Score = 26.1 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRP 36
+KKK +K KKK KK K +P
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSNKP 28
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 29.0 bits (65), Expect = 5.9
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 431 NAFFYTLVSQDTMEMSYSRKRQRFLINQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQ 490
F Y + Q M+ KRQ+ + N+ + + AG E ER R +Q L Q
Sbjct: 23 RRFLYKPIIQ-VMK-----KRQQRIANRWQDAEQRQQEAGQEAER-----YRQKQQSLEQ 71
Query: 491 Q---VLAASETDADEER 504
Q +A ++ ADE+R
Sbjct: 72 QRASFMAQAQEAADEQR 88
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 28.1 bits (63), Expect = 6.0
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVG 44
+ +K+ K ++++ +K +K+ K+ + + G
Sbjct: 96 AEARKEALKAYQQEELRKIQKRSKKSKKAEPVQG 129
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 29.5 bits (66), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 10 CKKKKKKKKKKKKKKKKKKK------KKKKKRPSAGKSLVG 44
C ++ K KK KK KK ++ KK+KK+ G S++G
Sbjct: 603 CGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMG 643
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal
protein S8e and similar proteins. This family contains
the eukaryotic/archaeal ribosomal protein S8, a
component of the small ribosomal subunits, as well as
the NSA2 gene product.
Length = 138
Score = 28.3 bits (64), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K K+K K K +KK+K + R A
Sbjct: 4 KHKRKATGGKFKVVRKKRKYELGRKPA 30
>gnl|CDD|215021 smart01092, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal
domain.
Length = 102
Score = 27.6 bits (62), Expect = 6.0
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 107 ISHTQKRSWEADQTMQWLQNQEWGIMLLDDGVPVAAKKNVEKDDAAVPEDEFGAKDYRAQ 166
++ T KR+ EA+ L + D A D D + +YR Q
Sbjct: 38 VAPTPKRAAEAEAA---LVGKPL-----TDEALARAAAAALAQDFTPLSDMRASAEYRRQ 89
Query: 167 MVL 169
+
Sbjct: 90 LAA 92
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 29.0 bits (65), Expect = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 17 KKKKKKKKKKKKKKKKKKRPS 37
++ K+KKKKK KKKK +
Sbjct: 86 NQENKQKKKKKDKKKKSPKSL 106
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 28.7 bits (64), Expect = 6.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 22 KKKKKKKKKKKKKRPSAGKS 41
K KKKKKK+ K PS S
Sbjct: 32 KSKKKKKKRSKATSPSHNAS 51
>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes IMP dehydrogenase, an enzyme of GMP
biosynthesis. This form contains two CBS domains. This
model describes a rather tightly conserved cluster of
IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 450
Score = 29.2 bits (66), Expect = 6.1
Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 441 DTMEMSYSRKRQRFLI--NQGYSYKVITKLAGMEEERGMHYSTRDEQGQLLQQVLAA-SE 497
+ +++ + + ++ + G +IT + + R ++++DE G+L+ V AA
Sbjct: 165 EALKVLHEHRIEKLPVVDKNGELVGLITM-KDIVKRRKFPHASKDENGRLI--VGAAVGT 221
Query: 498 TDADEERVA 506
+ D+ER
Sbjct: 222 REFDKERAE 230
>gnl|CDD|235377 PRK05255, PRK05255, hypothetical protein; Provisional.
Length = 171
Score = 28.7 bits (65), Expect = 6.2
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 401 ISSHGGSRRQEAQRLGRILRA 421
I+SH RRQ Q +G+++R
Sbjct: 63 ITSHEARRRQ-LQYIGKLMRN 82
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 28.8 bits (65), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 10 CKKKKKKKKKKKKKKKKKKKKKKKKR 35
C+++KKK +K KKK K+KK K +
Sbjct: 198 CRERKKKLEKLKKKCKEKKCNKYCSK 223
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 28.9 bits (65), Expect = 6.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK KK K KK KK K+ + K
Sbjct: 263 KKPAKKATAAKAKKTTAKKAAAKKAAKTK 291
Score = 28.5 bits (64), Expect = 8.4
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
G KK KK K KK KK + +A
Sbjct: 258 KGGPGKKPAKKATAAKAKKTTAKKAAAKKAA 288
Score = 28.5 bits (64), Expect = 9.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KK KK K KK KK KK K+
Sbjct: 263 KKPAKKATAAKAKKTTAKKAAAKKAAKTKKA 293
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated
C-terminal domain. This domain is found in a number of
different types of plant proteins including NAM-like
proteins.
Length = 147
Score = 28.1 bits (63), Expect = 6.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 9 GCKKKKKKKKKKKKKKKKKKKKKKKKR 35
G KK K+K ++ K K KK++ +K+K++
Sbjct: 64 GRKKAKEKLRRDKLKAKKEEAEKEKEK 90
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 28.0 bits (63), Expect = 6.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKK 33
+ K ++++K K+KKKKKKK+ +
Sbjct: 68 RNKAAEERRKLKEKKKKKKKELE 90
Score = 28.0 bits (63), Expect = 6.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
+ K ++++K K+KKKKKKK+ +
Sbjct: 68 RNKAAEERRKLKEKKKKKKKELE 90
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 28.7 bits (64), Expect = 6.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRPSA 38
K K KKK K KK KKK+ + A
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKREA 231
Score = 28.7 bits (64), Expect = 7.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRPS 37
K K KKK K KK KKK+ KR +
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKREA 231
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal
domain. The N-terminal domain appears to be specific
to the eukaryotic ribosomal proteins L25, L23, and
L23a.
Length = 52
Score = 26.1 bits (58), Expect = 7.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
K K K KK K KKK+K R S
Sbjct: 1 PKAKALKAKKAVLKGVHGKKKRKIRTS 27
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 29.2 bits (66), Expect = 7.0
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCTVRKRALVLCNSGVSV 65
+KK+K+ K + + K K +K AG VT A+ GVS
Sbjct: 768 QKKEKESKSELEALKGVGAKTAEKLKDAGVE--TVTDLTAADPDAVAAKVDGVSA 820
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 29.4 bits (66), Expect = 7.1
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
+K ++ + + KK ++ K+P+ K+
Sbjct: 1180 EKLQRAAARGESGAAKKVSRQAPKKPAPKKT 1210
Score = 29.1 bits (65), Expect = 9.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 8 SGCKKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
SG KK ++ KK KK KK + +
Sbjct: 1191 SGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 29.2 bits (66), Expect = 7.2
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPS 37
K K K + K KK K K K P
Sbjct: 189 KHKILIPSLKTRPKGKKYVKIKIKPPK 215
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 28.9 bits (65), Expect = 7.2
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKS 41
KKKKKKKKK KK K KK K+R + K+
Sbjct: 256 KKKKKKKKKVVHKKYKTKKLTGKQRKARVKA 286
Score = 28.9 bits (65), Expect = 7.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRPSAGK 40
K KKKKKKKKK KK K K+ + +
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQ 279
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
Members of this protein family have a novel N-terminal
domain, a single predicted membrane-spanning helix, and
a predicted cystosolic histidine kinase domain. We
designate this protein PrsK, and its companion
DNA-binding response regulator protein (TIGR02915) PrsR.
These predicted signal-transducing proteins appear to
enable enhancer-dependent transcriptional activation.
The prsK gene is often associated with exopolysaccharide
biosynthesis genes [Protein fate, Protein and peptide
secretion and trafficking, Signal transduction,
Two-component systems].
Length = 679
Score = 29.3 bits (66), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 268 WLELQKRGFIARVQCAEVWCPMSPEFYREYL 298
+ +++ AR++ + C MSP F RE L
Sbjct: 602 AIRVERECGAARIEIEDSGCGMSPAFIRERL 632
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.0 bits (65), Expect = 7.3
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+ +KK+K++ + K+K++K ++KK
Sbjct: 411 ENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 28.3 bits (64), Expect = 7.4
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 12/37 (32%)
Query: 11 KKKKKKKKKKKKKKKKKKK------------KKKKKR 35
KKKK K+ K K KKK K+KKK
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKH 37
>gnl|CDD|234468 TIGR04095, dnd_restrict_1, DNA phosphorothioation system
restriction enzyme. The DNA phosphorothioate
modification system dnd (DNA instability during
electrophoresis) recently has been shown to provide a
modification essential to a restriction system. This
protein family was detected by Partial Phylogenetic
Profiling as linked to dnd, and its members usually are
clustered with the dndABCDE genes.
Length = 451
Score = 28.8 bits (65), Expect = 7.4
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 359 TSQSERIQILQNFKLNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRI 418
S+ ER ++L+ F+ + + + + D D+P ++S + RQ QR GR+
Sbjct: 323 ESKEEREELLRQFE-SGLLQGLVAIRCLDEGVDIPATRTAYILAS-SSNPRQFIQRRGRV 380
Query: 419 LRAKKG 424
LR G
Sbjct: 381 LRPHPG 386
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 28.5 bits (64), Expect = 8.0
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K++K ++KK+K + + ++++ K R K+
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTR 65
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 28.5 bits (64), Expect = 8.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
F + + K +K++KK K++KK K +K+K
Sbjct: 87 FTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKL 119
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 28.9 bits (65), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSL 42
K K ++ +K + K+KKK+KKK K +
Sbjct: 314 KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQI 345
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 28.6 bits (64), Expect = 8.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 7 ISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGK-SLVGVTA 47
I G + K + K +K K+ KK+KK+++K + V A
Sbjct: 18 IYGPRPVKDEAKPRKIKRVKKRKKREEKDELDDEVEFVRSFA 59
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 27.7 bits (62), Expect = 8.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ K ++KK + K+K K KKK
Sbjct: 109 RKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed.
Length = 592
Score = 28.9 bits (64), Expect = 8.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVTACCT 50
+K +K++ + +++KK KK K+ G ++ GVTA T
Sbjct: 2 QKTRKERILEALQEEKKNKKSKKFKTGATIAGVTAIAT 39
>gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 100
Score = 27.2 bits (61), Expect = 8.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 217 EVHTIPAKM-FRRVLTIVQSHCKLGLTAT 244
E H AK +R++L + LGLTAT
Sbjct: 69 EAHHSSAKTKYRKILEKFKPAFLLGLTAT 97
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 27.1 bits (60), Expect = 9.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSAGK 40
KK KKKK K KK K KK+ + K
Sbjct: 39 KKAAAKKKKPAVKGKKGAKGKKETKQEEAK 68
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 28.3 bits (64), Expect = 9.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 3 FRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKR 35
F + + +K+KKK K++KK K++K K
Sbjct: 88 FTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKL 120
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 27.2 bits (60), Expect = 9.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKKKRPSA 38
K+KK +K K K KKK KKKK+ A
Sbjct: 9 KEKKAEKAKAGTAKDKKKWSKKKKKEEA 36
>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 752
Score = 28.7 bits (65), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 2 GFRDVISGCKKKKKKKKKKKKKKKKKKKKKKKKRPSAGKSLVGVT 46
G RD KK+KK+++ + KK + + RP K G T
Sbjct: 564 GSRDEQVLSTGKKEKKEEEPAAAVEPKKLEPRPRP---KVTKGFT 605
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 26.9 bits (60), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKKK 33
K +KK+K +KK++ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
Score = 26.9 bits (60), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
K +KK+K +KK++ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,284,918
Number of extensions: 2788969
Number of successful extensions: 14708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11544
Number of HSP's successfully gapped: 887
Length of query: 552
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 450
Effective length of database: 6,413,494
Effective search space: 2886072300
Effective search space used: 2886072300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)